Multiple sequence alignment - TraesCS7D01G117900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G117900 chr7D 100.000 3864 0 0 1 3864 72949115 72952978 0.000000e+00 7136.0
1 TraesCS7D01G117900 chr7D 92.308 104 8 0 3157 3260 105290304 105290201 8.650000e-32 148.0
2 TraesCS7D01G117900 chr7D 91.111 90 8 0 3073 3162 479076961 479076872 5.240000e-24 122.0
3 TraesCS7D01G117900 chr7B 94.786 1400 66 4 1553 2950 15588631 15587237 0.000000e+00 2174.0
4 TraesCS7D01G117900 chr7B 91.191 613 42 9 1 606 15590169 15589562 0.000000e+00 822.0
5 TraesCS7D01G117900 chr7B 91.063 414 29 4 606 1018 15589526 15589120 1.570000e-153 553.0
6 TraesCS7D01G117900 chr7B 90.441 408 20 8 1038 1427 15589067 15588661 1.590000e-143 520.0
7 TraesCS7D01G117900 chr7B 87.264 424 54 0 3402 3825 15559053 15558630 5.800000e-133 484.0
8 TraesCS7D01G117900 chr7B 100.000 28 0 0 578 605 281351271 281351244 7.000000e-03 52.8
9 TraesCS7D01G117900 chr7A 97.225 1117 31 0 1553 2669 77430893 77429777 0.000000e+00 1892.0
10 TraesCS7D01G117900 chr7A 94.481 616 24 4 848 1460 77431562 77430954 0.000000e+00 941.0
11 TraesCS7D01G117900 chr7A 93.894 606 33 4 1 604 77432549 77431946 0.000000e+00 911.0
12 TraesCS7D01G117900 chr7A 92.105 266 12 5 606 862 77431849 77431584 2.190000e-97 366.0
13 TraesCS7D01G117900 chr7A 81.784 269 29 8 2731 2988 77429750 77429491 1.410000e-49 207.0
14 TraesCS7D01G117900 chr3D 82.877 584 82 8 3264 3832 273382744 273383324 3.440000e-140 508.0
15 TraesCS7D01G117900 chr3D 92.308 104 8 0 3157 3260 306314567 306314464 8.650000e-32 148.0
16 TraesCS7D01G117900 chr2A 79.387 587 98 10 3265 3839 433356641 433356066 3.620000e-105 392.0
17 TraesCS7D01G117900 chr2A 88.889 90 10 0 3073 3162 423175072 423174983 1.130000e-20 111.0
18 TraesCS7D01G117900 chr6D 78.957 537 93 10 3273 3795 249958361 249957831 7.950000e-92 348.0
19 TraesCS7D01G117900 chr6D 77.835 582 77 20 3265 3833 22141848 22141306 2.900000e-81 313.0
20 TraesCS7D01G117900 chr6D 75.050 505 92 25 3357 3834 445058806 445059303 1.820000e-48 204.0
21 TraesCS7D01G117900 chr6D 92.157 102 8 0 3159 3260 125088448 125088347 1.120000e-30 145.0
22 TraesCS7D01G117900 chr6D 93.976 83 5 0 3073 3155 395990367 395990285 4.050000e-25 126.0
23 TraesCS7D01G117900 chr6A 77.860 542 103 8 3267 3795 346593262 346593799 1.730000e-83 320.0
24 TraesCS7D01G117900 chr1A 77.189 491 77 26 3368 3834 13849710 13849231 1.780000e-63 254.0
25 TraesCS7D01G117900 chr1A 75.102 490 91 19 3368 3834 492055401 492055882 2.350000e-47 200.0
26 TraesCS7D01G117900 chr1A 92.308 104 8 0 3155 3258 350162573 350162470 8.650000e-32 148.0
27 TraesCS7D01G117900 chr1A 90.000 90 8 1 3073 3162 477197795 477197707 8.770000e-22 115.0
28 TraesCS7D01G117900 chr5D 75.385 585 92 24 3266 3834 126576620 126577168 6.450000e-58 235.0
29 TraesCS7D01G117900 chr5D 91.346 104 9 0 3157 3260 253937044 253937147 4.020000e-30 143.0
30 TraesCS7D01G117900 chr5D 92.045 88 7 0 3074 3161 505178997 505178910 1.460000e-24 124.0
31 TraesCS7D01G117900 chr5D 83.908 87 11 2 1460 1544 551082799 551082714 3.200000e-11 80.5
32 TraesCS7D01G117900 chr5A 82.008 239 37 3 3264 3499 141885059 141885294 8.470000e-47 198.0
33 TraesCS7D01G117900 chr3B 96.154 104 4 0 3157 3260 370152228 370152125 1.850000e-38 171.0
34 TraesCS7D01G117900 chr2D 93.805 113 5 2 3149 3260 518263450 518263561 6.640000e-38 169.0
35 TraesCS7D01G117900 chr2D 91.139 79 7 0 3072 3150 154409308 154409386 1.470000e-19 108.0
36 TraesCS7D01G117900 chr2B 92.593 108 8 0 3153 3260 418952432 418952325 5.170000e-34 156.0
37 TraesCS7D01G117900 chr4D 90.654 107 10 0 3157 3263 198459243 198459137 4.020000e-30 143.0
38 TraesCS7D01G117900 chr4B 91.667 84 7 0 3073 3156 4690191 4690108 2.440000e-22 117.0
39 TraesCS7D01G117900 chr1B 90.805 87 6 1 3073 3157 668437414 668437328 8.770000e-22 115.0
40 TraesCS7D01G117900 chr6B 88.506 87 10 0 3070 3156 170346725 170346811 5.280000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G117900 chr7D 72949115 72952978 3863 False 7136.00 7136 100.00000 1 3864 1 chr7D.!!$F1 3863
1 TraesCS7D01G117900 chr7B 15587237 15590169 2932 True 1017.25 2174 91.87025 1 2950 4 chr7B.!!$R3 2949
2 TraesCS7D01G117900 chr7A 77429491 77432549 3058 True 863.40 1892 91.89780 1 2988 5 chr7A.!!$R1 2987
3 TraesCS7D01G117900 chr3D 273382744 273383324 580 False 508.00 508 82.87700 3264 3832 1 chr3D.!!$F1 568
4 TraesCS7D01G117900 chr2A 433356066 433356641 575 True 392.00 392 79.38700 3265 3839 1 chr2A.!!$R2 574
5 TraesCS7D01G117900 chr6D 249957831 249958361 530 True 348.00 348 78.95700 3273 3795 1 chr6D.!!$R3 522
6 TraesCS7D01G117900 chr6D 22141306 22141848 542 True 313.00 313 77.83500 3265 3833 1 chr6D.!!$R1 568
7 TraesCS7D01G117900 chr6A 346593262 346593799 537 False 320.00 320 77.86000 3267 3795 1 chr6A.!!$F1 528
8 TraesCS7D01G117900 chr5D 126576620 126577168 548 False 235.00 235 75.38500 3266 3834 1 chr5D.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 749 0.525761 CGAATGGACCAATGGCGTTT 59.474 50.0 0.00 0.00 0.00 3.60 F
891 1039 0.881600 GTACGTCGTGGCCAACCTTT 60.882 55.0 7.24 0.00 36.63 3.11 F
1575 1797 0.179132 TTGGCGTTGATCATGCATGC 60.179 50.0 22.25 11.82 39.48 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1784 0.041224 CAGAGCGTGCATGCATGATC 60.041 55.0 38.5 38.50 45.51 2.92 R
2493 2715 0.179020 CCATGGCCATGTACACCGAT 60.179 55.0 37.3 3.42 37.11 4.18 R
3018 3264 0.034863 GGGAGGGGTATGCGTTGAAA 60.035 55.0 0.0 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 5.003160 TCACATCATTTACCTTGACACCTG 58.997 41.667 0.00 0.00 0.00 4.00
124 125 2.941064 CTCCAACCATAGTGTGCATCAG 59.059 50.000 0.00 0.00 0.00 2.90
254 259 4.808364 TGCACTTTGCTTTTTATGGTGAAC 59.192 37.500 0.00 0.00 45.31 3.18
272 277 5.163237 GGTGAACAGTATTTAGGGCCTCATA 60.163 44.000 10.74 5.14 0.00 2.15
319 325 8.912614 ATATATCTCCCCTTAATAAAGACGGT 57.087 34.615 0.00 0.00 34.37 4.83
361 367 3.081804 GGTTTGATCACCCGAATCAACT 58.918 45.455 0.00 0.00 34.47 3.16
385 391 9.120538 ACTTGTTCATCAACACTTTAGTAATGT 57.879 29.630 0.00 0.00 42.46 2.71
388 394 9.944663 TGTTCATCAACACTTTAGTAATGTTTC 57.055 29.630 0.10 0.00 37.61 2.78
416 422 9.586435 AAAACTAACATTAAGAAGGCATATTGC 57.414 29.630 0.00 0.00 44.08 3.56
418 424 8.525290 ACTAACATTAAGAAGGCATATTGCTT 57.475 30.769 0.00 0.00 44.28 3.91
466 472 1.818674 GCACTTTTGGTATCAGGGTGG 59.181 52.381 7.02 0.00 0.00 4.61
537 544 6.744175 TCATCCAATAGCTTCTTGAGATCT 57.256 37.500 0.00 0.00 0.00 2.75
547 554 6.416415 AGCTTCTTGAGATCTCATTTCACAT 58.584 36.000 25.64 7.47 39.64 3.21
553 560 6.496144 TGAGATCTCATTTCACATGATCCT 57.504 37.500 21.67 0.00 35.46 3.24
619 722 2.663602 CGTTGTCAATCTTCCGAGACAG 59.336 50.000 0.00 0.00 41.46 3.51
645 748 1.933115 GCGAATGGACCAATGGCGTT 61.933 55.000 0.00 0.00 0.00 4.84
646 749 0.525761 CGAATGGACCAATGGCGTTT 59.474 50.000 0.00 0.00 0.00 3.60
680 783 2.764128 GACAGGAGGGGGCGATGA 60.764 66.667 0.00 0.00 0.00 2.92
843 955 2.167398 AACCAGGACGGGTCATGTCG 62.167 60.000 11.88 1.33 41.32 4.35
862 1010 4.620589 TCGACTAGGTATCGATCCTTCT 57.379 45.455 17.79 7.92 43.38 2.85
890 1038 1.301165 GTACGTCGTGGCCAACCTT 60.301 57.895 7.24 0.00 36.63 3.50
891 1039 0.881600 GTACGTCGTGGCCAACCTTT 60.882 55.000 7.24 0.00 36.63 3.11
900 1049 2.029020 GTGGCCAACCTTTGATTCCTTC 60.029 50.000 7.24 0.00 36.63 3.46
942 1091 3.036084 CGTGTGCGTCACCAGGTC 61.036 66.667 7.38 0.00 43.51 3.85
943 1092 2.665185 GTGTGCGTCACCAGGTCC 60.665 66.667 7.38 0.00 40.84 4.46
944 1093 3.936203 TGTGCGTCACCAGGTCCC 61.936 66.667 7.38 0.00 32.73 4.46
945 1094 3.626924 GTGCGTCACCAGGTCCCT 61.627 66.667 0.00 0.00 0.00 4.20
946 1095 3.311110 TGCGTCACCAGGTCCCTC 61.311 66.667 0.00 0.00 0.00 4.30
1411 1610 1.856597 CTACGCCTATTGGTACGCAAC 59.143 52.381 0.00 0.00 35.27 4.17
1432 1631 3.589881 GCACGCATGGCATCCTCC 61.590 66.667 0.00 0.00 0.00 4.30
1444 1643 4.556697 TGGCATCCTCCTTAGATCTTACA 58.443 43.478 0.00 0.00 0.00 2.41
1447 1646 6.787458 TGGCATCCTCCTTAGATCTTACATTA 59.213 38.462 0.00 0.00 0.00 1.90
1462 1661 7.624360 TCTTACATTAAGATCCGTGCAATTT 57.376 32.000 0.00 0.00 39.73 1.82
1463 1662 8.050778 TCTTACATTAAGATCCGTGCAATTTT 57.949 30.769 0.00 0.00 39.73 1.82
1464 1663 8.519526 TCTTACATTAAGATCCGTGCAATTTTT 58.480 29.630 0.00 0.00 39.73 1.94
1510 1709 8.350722 ACTACATGTTACTATATCACTTGACCG 58.649 37.037 2.30 0.00 0.00 4.79
1511 1710 7.342769 ACATGTTACTATATCACTTGACCGA 57.657 36.000 0.00 0.00 0.00 4.69
1512 1711 7.426410 ACATGTTACTATATCACTTGACCGAG 58.574 38.462 0.00 0.00 0.00 4.63
1513 1712 7.284716 ACATGTTACTATATCACTTGACCGAGA 59.715 37.037 0.00 0.00 0.00 4.04
1514 1713 7.024340 TGTTACTATATCACTTGACCGAGAC 57.976 40.000 0.00 0.00 0.00 3.36
1515 1714 6.827251 TGTTACTATATCACTTGACCGAGACT 59.173 38.462 0.00 0.00 0.00 3.24
1516 1715 7.338703 TGTTACTATATCACTTGACCGAGACTT 59.661 37.037 0.00 0.00 0.00 3.01
1517 1716 6.777213 ACTATATCACTTGACCGAGACTTT 57.223 37.500 0.00 0.00 0.00 2.66
1518 1717 6.565234 ACTATATCACTTGACCGAGACTTTG 58.435 40.000 0.00 0.00 0.00 2.77
1519 1718 3.753294 ATCACTTGACCGAGACTTTGT 57.247 42.857 0.00 0.00 0.00 2.83
1520 1719 3.536956 TCACTTGACCGAGACTTTGTT 57.463 42.857 0.00 0.00 0.00 2.83
1521 1720 4.659111 TCACTTGACCGAGACTTTGTTA 57.341 40.909 0.00 0.00 0.00 2.41
1522 1721 4.617959 TCACTTGACCGAGACTTTGTTAG 58.382 43.478 0.00 0.00 0.00 2.34
1523 1722 3.741344 CACTTGACCGAGACTTTGTTAGG 59.259 47.826 0.00 0.00 0.00 2.69
1524 1723 3.387050 ACTTGACCGAGACTTTGTTAGGT 59.613 43.478 0.00 0.00 34.27 3.08
1525 1724 3.380479 TGACCGAGACTTTGTTAGGTG 57.620 47.619 0.00 0.00 31.35 4.00
1526 1725 2.696707 TGACCGAGACTTTGTTAGGTGT 59.303 45.455 0.00 0.00 31.35 4.16
1527 1726 3.243636 TGACCGAGACTTTGTTAGGTGTC 60.244 47.826 0.00 0.00 31.35 3.67
1528 1727 2.696707 ACCGAGACTTTGTTAGGTGTCA 59.303 45.455 0.00 0.00 32.41 3.58
1529 1728 3.243771 ACCGAGACTTTGTTAGGTGTCAG 60.244 47.826 0.00 0.00 32.41 3.51
1564 1784 3.915437 ACCATAGTTTTCTTGGCGTTG 57.085 42.857 0.00 0.00 34.09 4.10
1575 1797 0.179132 TTGGCGTTGATCATGCATGC 60.179 50.000 22.25 11.82 39.48 4.06
1742 1964 4.704833 GCTGGTCAAGGCAGCCGA 62.705 66.667 5.55 0.00 36.06 5.54
1806 2028 0.321346 ACATGCAGGACATCGTCACA 59.679 50.000 4.84 0.00 36.64 3.58
1977 2199 0.318445 CCACCTTCTTCGACGACGTT 60.318 55.000 0.13 0.00 40.69 3.99
2478 2700 2.582498 GTCAAGCGGATCGACGGG 60.582 66.667 0.00 0.00 0.00 5.28
2683 2918 2.534019 CCGCCCGTGCATGTCATAC 61.534 63.158 4.96 0.00 37.32 2.39
2684 2919 2.870341 CGCCCGTGCATGTCATACG 61.870 63.158 4.96 1.80 37.32 3.06
2685 2920 1.813753 GCCCGTGCATGTCATACGT 60.814 57.895 4.96 0.00 36.17 3.57
2686 2921 0.528901 GCCCGTGCATGTCATACGTA 60.529 55.000 4.96 0.00 36.17 3.57
2687 2922 1.205657 CCCGTGCATGTCATACGTAC 58.794 55.000 4.96 0.00 36.17 3.67
2691 2926 2.256174 GTGCATGTCATACGTACGTGT 58.744 47.619 30.25 21.74 36.45 4.49
2693 2928 4.039703 GTGCATGTCATACGTACGTGTAT 58.960 43.478 30.25 14.41 36.45 2.29
2699 2934 7.490868 CATGTCATACGTACGTGTATTCATTC 58.509 38.462 30.25 10.41 32.81 2.67
2715 2950 8.688151 TGTATTCATTCATTCATTGCTGATTGA 58.312 29.630 8.39 8.39 39.04 2.57
2718 2953 7.165460 TCATTCATTCATTGCTGATTGAAGT 57.835 32.000 14.66 5.37 46.62 3.01
2721 2956 7.878477 TTCATTCATTGCTGATTGAAGTTTC 57.122 32.000 8.42 0.00 42.48 2.78
2729 2964 8.671921 CATTGCTGATTGAAGTTTCTACATAGT 58.328 33.333 0.00 0.00 0.00 2.12
2807 3042 3.631686 TGTGTAAGTGCAAGCAAAGATGT 59.368 39.130 0.00 0.00 0.00 3.06
2819 3054 5.929058 AGCAAAGATGTCTAGATGAGTCA 57.071 39.130 0.00 0.00 0.00 3.41
2821 3056 6.705302 AGCAAAGATGTCTAGATGAGTCAAA 58.295 36.000 0.00 0.00 0.00 2.69
2822 3057 6.817641 AGCAAAGATGTCTAGATGAGTCAAAG 59.182 38.462 0.00 0.00 0.00 2.77
2864 3109 8.701908 ATCATAATTAATTGCATGACAGTCCT 57.298 30.769 13.42 0.00 30.64 3.85
2919 3164 7.685481 TGTAATTGTAATGTCCCGGATCATAT 58.315 34.615 0.73 1.57 0.00 1.78
2927 3172 4.898320 TGTCCCGGATCATATCTTCATTG 58.102 43.478 0.73 0.00 0.00 2.82
2954 3200 3.206150 CAAGATACGGGTGAGATTTGGG 58.794 50.000 0.00 0.00 0.00 4.12
2959 3205 0.466189 CGGGTGAGATTTGGGGATGG 60.466 60.000 0.00 0.00 0.00 3.51
2960 3206 0.106015 GGGTGAGATTTGGGGATGGG 60.106 60.000 0.00 0.00 0.00 4.00
2973 3219 2.158608 GGGGATGGGAAATGGAGTACAG 60.159 54.545 0.00 0.00 0.00 2.74
2983 3229 2.801077 TGGAGTACAGATGAGGACGA 57.199 50.000 0.00 0.00 0.00 4.20
2988 3234 4.193090 GAGTACAGATGAGGACGAGAGAA 58.807 47.826 0.00 0.00 0.00 2.87
2989 3235 3.942748 AGTACAGATGAGGACGAGAGAAC 59.057 47.826 0.00 0.00 0.00 3.01
2990 3236 2.796557 ACAGATGAGGACGAGAGAACA 58.203 47.619 0.00 0.00 0.00 3.18
2991 3237 2.752354 ACAGATGAGGACGAGAGAACAG 59.248 50.000 0.00 0.00 0.00 3.16
2992 3238 3.013219 CAGATGAGGACGAGAGAACAGA 58.987 50.000 0.00 0.00 0.00 3.41
2993 3239 3.065233 CAGATGAGGACGAGAGAACAGAG 59.935 52.174 0.00 0.00 0.00 3.35
2994 3240 2.861147 TGAGGACGAGAGAACAGAGA 57.139 50.000 0.00 0.00 0.00 3.10
2995 3241 3.141767 TGAGGACGAGAGAACAGAGAA 57.858 47.619 0.00 0.00 0.00 2.87
2996 3242 3.487372 TGAGGACGAGAGAACAGAGAAA 58.513 45.455 0.00 0.00 0.00 2.52
2997 3243 3.253677 TGAGGACGAGAGAACAGAGAAAC 59.746 47.826 0.00 0.00 0.00 2.78
2998 3244 3.223435 AGGACGAGAGAACAGAGAAACA 58.777 45.455 0.00 0.00 0.00 2.83
2999 3245 3.004944 AGGACGAGAGAACAGAGAAACAC 59.995 47.826 0.00 0.00 0.00 3.32
3000 3246 3.243434 GGACGAGAGAACAGAGAAACACA 60.243 47.826 0.00 0.00 0.00 3.72
3001 3247 3.971150 ACGAGAGAACAGAGAAACACAG 58.029 45.455 0.00 0.00 0.00 3.66
3002 3248 3.632604 ACGAGAGAACAGAGAAACACAGA 59.367 43.478 0.00 0.00 0.00 3.41
3003 3249 4.225984 CGAGAGAACAGAGAAACACAGAG 58.774 47.826 0.00 0.00 0.00 3.35
3004 3250 4.023622 CGAGAGAACAGAGAAACACAGAGA 60.024 45.833 0.00 0.00 0.00 3.10
3005 3251 5.452078 AGAGAACAGAGAAACACAGAGAG 57.548 43.478 0.00 0.00 0.00 3.20
3006 3252 5.136828 AGAGAACAGAGAAACACAGAGAGA 58.863 41.667 0.00 0.00 0.00 3.10
3007 3253 5.241506 AGAGAACAGAGAAACACAGAGAGAG 59.758 44.000 0.00 0.00 0.00 3.20
3008 3254 4.892934 AGAACAGAGAAACACAGAGAGAGT 59.107 41.667 0.00 0.00 0.00 3.24
3009 3255 5.362430 AGAACAGAGAAACACAGAGAGAGTT 59.638 40.000 0.00 0.00 32.10 3.01
3010 3256 5.606348 ACAGAGAAACACAGAGAGAGTTT 57.394 39.130 0.00 0.00 42.52 2.66
3011 3257 5.983540 ACAGAGAAACACAGAGAGAGTTTT 58.016 37.500 0.00 0.00 40.41 2.43
3012 3258 7.113658 ACAGAGAAACACAGAGAGAGTTTTA 57.886 36.000 0.00 0.00 40.41 1.52
3013 3259 7.206687 ACAGAGAAACACAGAGAGAGTTTTAG 58.793 38.462 0.00 0.00 40.41 1.85
3014 3260 7.068839 ACAGAGAAACACAGAGAGAGTTTTAGA 59.931 37.037 0.00 0.00 40.41 2.10
3015 3261 7.594758 CAGAGAAACACAGAGAGAGTTTTAGAG 59.405 40.741 0.00 0.00 40.41 2.43
3016 3262 7.504238 AGAGAAACACAGAGAGAGTTTTAGAGA 59.496 37.037 0.00 0.00 40.41 3.10
3017 3263 7.430441 AGAAACACAGAGAGAGTTTTAGAGAC 58.570 38.462 0.00 0.00 40.41 3.36
3018 3264 6.969993 AACACAGAGAGAGTTTTAGAGACT 57.030 37.500 0.00 0.00 0.00 3.24
3019 3265 6.969993 ACACAGAGAGAGTTTTAGAGACTT 57.030 37.500 0.00 0.00 0.00 3.01
3020 3266 7.354751 ACACAGAGAGAGTTTTAGAGACTTT 57.645 36.000 0.00 0.00 0.00 2.66
3021 3267 7.430441 ACACAGAGAGAGTTTTAGAGACTTTC 58.570 38.462 0.00 0.00 0.00 2.62
3022 3268 7.068839 ACACAGAGAGAGTTTTAGAGACTTTCA 59.931 37.037 0.00 0.00 32.37 2.69
3023 3269 7.923344 CACAGAGAGAGTTTTAGAGACTTTCAA 59.077 37.037 0.00 0.00 32.37 2.69
3024 3270 7.923878 ACAGAGAGAGTTTTAGAGACTTTCAAC 59.076 37.037 0.00 0.00 32.37 3.18
3025 3271 7.114247 CAGAGAGAGTTTTAGAGACTTTCAACG 59.886 40.741 0.00 0.00 32.37 4.10
3026 3272 5.692654 AGAGAGTTTTAGAGACTTTCAACGC 59.307 40.000 0.00 0.00 32.37 4.84
3027 3273 5.357257 AGAGTTTTAGAGACTTTCAACGCA 58.643 37.500 0.00 0.00 0.00 5.24
3028 3274 5.992217 AGAGTTTTAGAGACTTTCAACGCAT 59.008 36.000 0.00 0.00 0.00 4.73
3029 3275 7.152645 AGAGTTTTAGAGACTTTCAACGCATA 58.847 34.615 0.00 0.00 0.00 3.14
3030 3276 7.116519 AGAGTTTTAGAGACTTTCAACGCATAC 59.883 37.037 0.00 0.00 0.00 2.39
3031 3277 6.147328 AGTTTTAGAGACTTTCAACGCATACC 59.853 38.462 0.00 0.00 0.00 2.73
3032 3278 2.973945 AGAGACTTTCAACGCATACCC 58.026 47.619 0.00 0.00 0.00 3.69
3033 3279 2.007608 GAGACTTTCAACGCATACCCC 58.992 52.381 0.00 0.00 0.00 4.95
3034 3280 1.628846 AGACTTTCAACGCATACCCCT 59.371 47.619 0.00 0.00 0.00 4.79
3035 3281 2.007608 GACTTTCAACGCATACCCCTC 58.992 52.381 0.00 0.00 0.00 4.30
3036 3282 1.339727 ACTTTCAACGCATACCCCTCC 60.340 52.381 0.00 0.00 0.00 4.30
3037 3283 0.034863 TTTCAACGCATACCCCTCCC 60.035 55.000 0.00 0.00 0.00 4.30
3038 3284 1.202099 TTCAACGCATACCCCTCCCA 61.202 55.000 0.00 0.00 0.00 4.37
3039 3285 1.451387 CAACGCATACCCCTCCCAC 60.451 63.158 0.00 0.00 0.00 4.61
3040 3286 1.921346 AACGCATACCCCTCCCACA 60.921 57.895 0.00 0.00 0.00 4.17
3041 3287 1.279025 AACGCATACCCCTCCCACAT 61.279 55.000 0.00 0.00 0.00 3.21
3042 3288 1.227943 CGCATACCCCTCCCACATG 60.228 63.158 0.00 0.00 0.00 3.21
3043 3289 1.151450 GCATACCCCTCCCACATGG 59.849 63.158 0.00 0.00 0.00 3.66
3044 3290 1.151450 CATACCCCTCCCACATGGC 59.849 63.158 0.00 0.00 0.00 4.40
3045 3291 1.308657 ATACCCCTCCCACATGGCA 60.309 57.895 0.00 0.00 0.00 4.92
3046 3292 1.645402 ATACCCCTCCCACATGGCAC 61.645 60.000 0.00 0.00 0.00 5.01
3047 3293 4.802051 CCCCTCCCACATGGCACG 62.802 72.222 0.00 0.00 0.00 5.34
3048 3294 4.033776 CCCTCCCACATGGCACGT 62.034 66.667 0.00 0.00 0.00 4.49
3049 3295 2.034066 CCTCCCACATGGCACGTT 59.966 61.111 0.00 0.00 0.00 3.99
3050 3296 2.040544 CCTCCCACATGGCACGTTC 61.041 63.158 0.00 0.00 0.00 3.95
3051 3297 1.302431 CTCCCACATGGCACGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
3052 3298 1.300971 CTCCCACATGGCACGTTCAG 61.301 60.000 0.00 0.00 0.00 3.02
3053 3299 2.562912 CCACATGGCACGTTCAGC 59.437 61.111 0.00 0.00 0.00 4.26
3054 3300 1.968017 CCACATGGCACGTTCAGCT 60.968 57.895 0.00 0.00 0.00 4.24
3055 3301 1.499056 CACATGGCACGTTCAGCTC 59.501 57.895 0.00 0.00 0.00 4.09
3056 3302 0.952497 CACATGGCACGTTCAGCTCT 60.952 55.000 0.00 0.00 0.00 4.09
3057 3303 0.250467 ACATGGCACGTTCAGCTCTT 60.250 50.000 0.00 0.00 0.00 2.85
3058 3304 1.001974 ACATGGCACGTTCAGCTCTTA 59.998 47.619 0.00 0.00 0.00 2.10
3059 3305 2.283298 CATGGCACGTTCAGCTCTTAT 58.717 47.619 0.00 0.00 0.00 1.73
3060 3306 3.118775 ACATGGCACGTTCAGCTCTTATA 60.119 43.478 0.00 0.00 0.00 0.98
3061 3307 2.888594 TGGCACGTTCAGCTCTTATAC 58.111 47.619 0.00 0.00 0.00 1.47
3062 3308 2.232696 TGGCACGTTCAGCTCTTATACA 59.767 45.455 0.00 0.00 0.00 2.29
3063 3309 2.860735 GGCACGTTCAGCTCTTATACAG 59.139 50.000 0.00 0.00 0.00 2.74
3064 3310 3.428999 GGCACGTTCAGCTCTTATACAGA 60.429 47.826 0.00 0.00 0.00 3.41
3065 3311 4.174009 GCACGTTCAGCTCTTATACAGAA 58.826 43.478 0.00 0.00 0.00 3.02
3066 3312 4.266502 GCACGTTCAGCTCTTATACAGAAG 59.733 45.833 0.00 0.00 0.00 2.85
3067 3313 5.641709 CACGTTCAGCTCTTATACAGAAGA 58.358 41.667 0.00 0.00 34.30 2.87
3076 3322 5.269505 TCTTATACAGAAGAGGCAAGAGC 57.730 43.478 0.00 0.00 33.39 4.09
3077 3323 4.711846 TCTTATACAGAAGAGGCAAGAGCA 59.288 41.667 0.00 0.00 34.83 4.26
3078 3324 5.365025 TCTTATACAGAAGAGGCAAGAGCAT 59.635 40.000 0.00 0.00 34.83 3.79
3079 3325 2.110901 ACAGAAGAGGCAAGAGCATG 57.889 50.000 0.00 0.00 44.61 4.06
3080 3326 1.339824 ACAGAAGAGGCAAGAGCATGG 60.340 52.381 0.00 0.00 44.61 3.66
3081 3327 0.990374 AGAAGAGGCAAGAGCATGGT 59.010 50.000 0.00 0.00 44.61 3.55
3082 3328 1.353694 AGAAGAGGCAAGAGCATGGTT 59.646 47.619 0.00 0.00 44.61 3.67
3083 3329 2.573462 AGAAGAGGCAAGAGCATGGTTA 59.427 45.455 0.00 0.00 44.61 2.85
3084 3330 3.009473 AGAAGAGGCAAGAGCATGGTTAA 59.991 43.478 0.00 0.00 44.61 2.01
3085 3331 3.659183 AGAGGCAAGAGCATGGTTAAT 57.341 42.857 0.00 0.00 44.61 1.40
3086 3332 4.778213 AGAGGCAAGAGCATGGTTAATA 57.222 40.909 0.00 0.00 44.61 0.98
3087 3333 4.712476 AGAGGCAAGAGCATGGTTAATAG 58.288 43.478 0.00 0.00 44.61 1.73
3088 3334 4.164988 AGAGGCAAGAGCATGGTTAATAGT 59.835 41.667 0.00 0.00 44.61 2.12
3089 3335 5.366768 AGAGGCAAGAGCATGGTTAATAGTA 59.633 40.000 0.00 0.00 44.61 1.82
3090 3336 6.043706 AGAGGCAAGAGCATGGTTAATAGTAT 59.956 38.462 0.00 0.00 44.61 2.12
3091 3337 7.235606 AGAGGCAAGAGCATGGTTAATAGTATA 59.764 37.037 0.00 0.00 44.61 1.47
3092 3338 7.390027 AGGCAAGAGCATGGTTAATAGTATAG 58.610 38.462 0.00 0.00 44.61 1.31
3093 3339 6.092807 GGCAAGAGCATGGTTAATAGTATAGC 59.907 42.308 0.00 0.00 44.61 2.97
3094 3340 6.650807 GCAAGAGCATGGTTAATAGTATAGCA 59.349 38.462 0.00 0.00 41.58 3.49
3095 3341 7.173218 GCAAGAGCATGGTTAATAGTATAGCAA 59.827 37.037 0.00 0.00 41.58 3.91
3096 3342 9.056005 CAAGAGCATGGTTAATAGTATAGCAAA 57.944 33.333 0.00 0.00 0.00 3.68
3097 3343 8.608844 AGAGCATGGTTAATAGTATAGCAAAC 57.391 34.615 0.00 0.00 0.00 2.93
3098 3344 8.210946 AGAGCATGGTTAATAGTATAGCAAACA 58.789 33.333 0.00 0.00 0.00 2.83
3099 3345 8.746052 AGCATGGTTAATAGTATAGCAAACAA 57.254 30.769 0.00 0.00 0.00 2.83
3100 3346 8.621286 AGCATGGTTAATAGTATAGCAAACAAC 58.379 33.333 0.00 0.00 0.00 3.32
3101 3347 8.402472 GCATGGTTAATAGTATAGCAAACAACA 58.598 33.333 0.00 0.00 0.00 3.33
3102 3348 9.935682 CATGGTTAATAGTATAGCAAACAACAG 57.064 33.333 0.00 0.00 0.00 3.16
3103 3349 8.500753 TGGTTAATAGTATAGCAAACAACAGG 57.499 34.615 0.00 0.00 0.00 4.00
3104 3350 8.104566 TGGTTAATAGTATAGCAAACAACAGGT 58.895 33.333 0.00 0.00 0.00 4.00
3105 3351 8.953313 GGTTAATAGTATAGCAAACAACAGGTT 58.047 33.333 0.00 0.00 42.98 3.50
3112 3358 9.899661 AGTATAGCAAACAACAGGTTATATGAA 57.100 29.630 0.00 0.00 39.29 2.57
3114 3360 8.807948 ATAGCAAACAACAGGTTATATGAAGT 57.192 30.769 0.00 0.00 39.29 3.01
3115 3361 7.524717 AGCAAACAACAGGTTATATGAAGTT 57.475 32.000 0.00 0.00 39.29 2.66
3116 3362 7.370383 AGCAAACAACAGGTTATATGAAGTTG 58.630 34.615 0.00 0.00 39.29 3.16
3117 3363 6.089417 GCAAACAACAGGTTATATGAAGTTGC 59.911 38.462 0.00 0.00 39.29 4.17
3118 3364 5.897377 ACAACAGGTTATATGAAGTTGCC 57.103 39.130 0.00 0.00 39.78 4.52
3119 3365 5.321102 ACAACAGGTTATATGAAGTTGCCA 58.679 37.500 0.00 0.00 39.78 4.92
3120 3366 5.951747 ACAACAGGTTATATGAAGTTGCCAT 59.048 36.000 0.00 0.00 39.78 4.40
3121 3367 6.127647 ACAACAGGTTATATGAAGTTGCCATG 60.128 38.462 0.00 0.00 39.78 3.66
3122 3368 5.509498 ACAGGTTATATGAAGTTGCCATGT 58.491 37.500 0.00 0.00 0.00 3.21
3123 3369 5.590259 ACAGGTTATATGAAGTTGCCATGTC 59.410 40.000 0.00 0.00 0.00 3.06
3124 3370 5.589855 CAGGTTATATGAAGTTGCCATGTCA 59.410 40.000 0.00 0.00 0.00 3.58
3125 3371 5.590259 AGGTTATATGAAGTTGCCATGTCAC 59.410 40.000 0.00 0.00 0.00 3.67
3126 3372 5.356751 GGTTATATGAAGTTGCCATGTCACA 59.643 40.000 0.00 0.00 0.00 3.58
3127 3373 6.039717 GGTTATATGAAGTTGCCATGTCACAT 59.960 38.462 0.00 0.00 0.00 3.21
3128 3374 7.228507 GGTTATATGAAGTTGCCATGTCACATA 59.771 37.037 0.00 0.00 0.00 2.29
3129 3375 8.786898 GTTATATGAAGTTGCCATGTCACATAT 58.213 33.333 0.00 0.00 35.13 1.78
3131 3377 6.872628 ATGAAGTTGCCATGTCACATATAG 57.127 37.500 0.00 0.00 0.00 1.31
3132 3378 5.744171 TGAAGTTGCCATGTCACATATAGT 58.256 37.500 0.00 0.00 0.00 2.12
3133 3379 6.179756 TGAAGTTGCCATGTCACATATAGTT 58.820 36.000 0.00 0.00 0.00 2.24
3134 3380 7.334858 TGAAGTTGCCATGTCACATATAGTTA 58.665 34.615 0.00 0.00 0.00 2.24
3135 3381 7.826744 TGAAGTTGCCATGTCACATATAGTTAA 59.173 33.333 0.00 0.00 0.00 2.01
3136 3382 7.553881 AGTTGCCATGTCACATATAGTTAAC 57.446 36.000 0.00 0.00 0.00 2.01
3137 3383 6.542370 AGTTGCCATGTCACATATAGTTAACC 59.458 38.462 0.88 0.00 0.00 2.85
3138 3384 6.247229 TGCCATGTCACATATAGTTAACCT 57.753 37.500 0.88 0.00 0.00 3.50
3139 3385 7.368198 TGCCATGTCACATATAGTTAACCTA 57.632 36.000 0.88 0.00 0.00 3.08
3140 3386 7.797062 TGCCATGTCACATATAGTTAACCTAA 58.203 34.615 0.88 0.00 0.00 2.69
3141 3387 8.436778 TGCCATGTCACATATAGTTAACCTAAT 58.563 33.333 0.88 0.00 0.00 1.73
3142 3388 9.938280 GCCATGTCACATATAGTTAACCTAATA 57.062 33.333 0.88 0.00 0.00 0.98
3146 3392 9.150028 TGTCACATATAGTTAACCTAATAGCCA 57.850 33.333 0.88 0.00 0.00 4.75
3147 3393 9.991906 GTCACATATAGTTAACCTAATAGCCAA 57.008 33.333 0.88 0.00 0.00 4.52
3148 3394 9.991906 TCACATATAGTTAACCTAATAGCCAAC 57.008 33.333 0.88 0.00 0.00 3.77
3149 3395 9.772973 CACATATAGTTAACCTAATAGCCAACA 57.227 33.333 0.88 0.00 0.00 3.33
3160 3406 7.162082 ACCTAATAGCCAACATGTATAAGAGC 58.838 38.462 0.00 0.00 0.00 4.09
3161 3407 7.161404 CCTAATAGCCAACATGTATAAGAGCA 58.839 38.462 0.00 0.00 0.00 4.26
3162 3408 7.826252 CCTAATAGCCAACATGTATAAGAGCAT 59.174 37.037 0.00 0.00 0.00 3.79
3163 3409 7.444629 AATAGCCAACATGTATAAGAGCATG 57.555 36.000 0.00 0.00 45.61 4.06
3164 3410 4.139786 AGCCAACATGTATAAGAGCATGG 58.860 43.478 0.00 0.31 44.74 3.66
3165 3411 3.885297 GCCAACATGTATAAGAGCATGGT 59.115 43.478 0.00 0.00 44.74 3.55
3166 3412 4.339247 GCCAACATGTATAAGAGCATGGTT 59.661 41.667 0.00 0.00 44.74 3.67
3167 3413 5.530915 GCCAACATGTATAAGAGCATGGTTA 59.469 40.000 0.00 0.00 44.74 2.85
3168 3414 6.039270 GCCAACATGTATAAGAGCATGGTTAA 59.961 38.462 0.00 0.00 44.74 2.01
3169 3415 7.255590 GCCAACATGTATAAGAGCATGGTTAAT 60.256 37.037 0.00 0.00 44.74 1.40
3170 3416 9.283768 CCAACATGTATAAGAGCATGGTTAATA 57.716 33.333 0.00 0.00 44.74 0.98
3172 3418 8.553459 ACATGTATAAGAGCATGGTTAATAGC 57.447 34.615 0.00 0.00 44.74 2.97
3173 3419 8.156820 ACATGTATAAGAGCATGGTTAATAGCA 58.843 33.333 0.00 0.00 44.74 3.49
3174 3420 9.170734 CATGTATAAGAGCATGGTTAATAGCAT 57.829 33.333 0.00 0.00 42.99 3.79
3176 3422 9.875691 TGTATAAGAGCATGGTTAATAGCATAG 57.124 33.333 0.00 0.00 40.37 2.23
3177 3423 7.856145 ATAAGAGCATGGTTAATAGCATAGC 57.144 36.000 0.00 0.00 40.37 2.97
3178 3424 4.583871 AGAGCATGGTTAATAGCATAGCC 58.416 43.478 0.00 0.00 40.37 3.93
3179 3425 4.042062 AGAGCATGGTTAATAGCATAGCCA 59.958 41.667 0.00 3.04 40.37 4.75
3180 3426 4.728772 AGCATGGTTAATAGCATAGCCAA 58.271 39.130 0.00 0.00 40.37 4.52
3181 3427 4.520492 AGCATGGTTAATAGCATAGCCAAC 59.480 41.667 0.00 1.55 40.37 3.77
3182 3428 4.520492 GCATGGTTAATAGCATAGCCAACT 59.480 41.667 0.00 0.00 40.37 3.16
3183 3429 5.563475 GCATGGTTAATAGCATAGCCAACTG 60.563 44.000 0.00 1.85 40.37 3.16
3184 3430 3.882888 TGGTTAATAGCATAGCCAACTGC 59.117 43.478 0.00 0.00 33.79 4.40
3198 3444 3.748083 CCAACTGCTGGCTATATGATGT 58.252 45.455 0.00 0.00 38.76 3.06
3199 3445 4.139786 CCAACTGCTGGCTATATGATGTT 58.860 43.478 0.00 0.00 38.76 2.71
3200 3446 4.023450 CCAACTGCTGGCTATATGATGTTG 60.023 45.833 0.00 0.00 38.76 3.33
3201 3447 3.144506 ACTGCTGGCTATATGATGTTGC 58.855 45.455 0.00 0.00 0.00 4.17
3202 3448 2.486982 CTGCTGGCTATATGATGTTGCC 59.513 50.000 7.62 7.62 43.49 4.52
3207 3453 4.691860 GGCTATATGATGTTGCCATGTC 57.308 45.455 9.49 0.00 42.79 3.06
3208 3454 4.074259 GGCTATATGATGTTGCCATGTCA 58.926 43.478 9.49 0.00 42.79 3.58
3209 3455 4.703575 GGCTATATGATGTTGCCATGTCAT 59.296 41.667 9.49 0.00 42.79 3.06
3210 3456 5.882000 GGCTATATGATGTTGCCATGTCATA 59.118 40.000 9.49 4.48 42.79 2.15
3211 3457 6.544931 GGCTATATGATGTTGCCATGTCATAT 59.455 38.462 9.49 14.90 42.79 1.78
3212 3458 7.716560 GGCTATATGATGTTGCCATGTCATATA 59.283 37.037 9.49 15.35 42.79 0.86
3213 3459 9.281371 GCTATATGATGTTGCCATGTCATATAT 57.719 33.333 16.04 3.54 34.05 0.86
3217 3463 8.728337 ATGATGTTGCCATGTCATATATAGTC 57.272 34.615 0.00 0.00 0.00 2.59
3218 3464 7.678837 TGATGTTGCCATGTCATATATAGTCA 58.321 34.615 0.00 0.00 0.00 3.41
3219 3465 7.603784 TGATGTTGCCATGTCATATATAGTCAC 59.396 37.037 0.00 0.00 0.00 3.67
3220 3466 6.230472 TGTTGCCATGTCATATATAGTCACC 58.770 40.000 0.00 0.00 0.00 4.02
3221 3467 6.183361 TGTTGCCATGTCATATATAGTCACCA 60.183 38.462 0.00 0.00 0.00 4.17
3222 3468 6.625532 TGCCATGTCATATATAGTCACCAT 57.374 37.500 0.00 0.00 0.00 3.55
3223 3469 7.019656 TGCCATGTCATATATAGTCACCATT 57.980 36.000 0.00 0.00 0.00 3.16
3224 3470 7.460910 TGCCATGTCATATATAGTCACCATTT 58.539 34.615 0.00 0.00 0.00 2.32
3225 3471 8.601546 TGCCATGTCATATATAGTCACCATTTA 58.398 33.333 0.00 0.00 0.00 1.40
3226 3472 9.618890 GCCATGTCATATATAGTCACCATTTAT 57.381 33.333 0.00 0.00 0.00 1.40
3239 3485 8.306313 AGTCACCATTTATAGTCACTCATACA 57.694 34.615 0.00 0.00 0.00 2.29
3240 3486 8.758829 AGTCACCATTTATAGTCACTCATACAA 58.241 33.333 0.00 0.00 0.00 2.41
3241 3487 8.818057 GTCACCATTTATAGTCACTCATACAAC 58.182 37.037 0.00 0.00 0.00 3.32
3242 3488 8.536175 TCACCATTTATAGTCACTCATACAACA 58.464 33.333 0.00 0.00 0.00 3.33
3243 3489 9.161629 CACCATTTATAGTCACTCATACAACAA 57.838 33.333 0.00 0.00 0.00 2.83
3244 3490 9.733556 ACCATTTATAGTCACTCATACAACAAA 57.266 29.630 0.00 0.00 0.00 2.83
3250 3496 6.787085 AGTCACTCATACAACAAAGTTAGC 57.213 37.500 0.00 0.00 0.00 3.09
3251 3497 6.525629 AGTCACTCATACAACAAAGTTAGCT 58.474 36.000 0.00 0.00 0.00 3.32
3252 3498 7.667557 AGTCACTCATACAACAAAGTTAGCTA 58.332 34.615 0.00 0.00 0.00 3.32
3253 3499 8.314751 AGTCACTCATACAACAAAGTTAGCTAT 58.685 33.333 0.00 0.00 0.00 2.97
3254 3500 9.582431 GTCACTCATACAACAAAGTTAGCTATA 57.418 33.333 0.00 0.00 0.00 1.31
3257 3503 9.601217 ACTCATACAACAAAGTTAGCTATAAGG 57.399 33.333 0.00 0.00 0.00 2.69
3258 3504 9.601217 CTCATACAACAAAGTTAGCTATAAGGT 57.399 33.333 0.00 0.00 0.00 3.50
3259 3505 9.953565 TCATACAACAAAGTTAGCTATAAGGTT 57.046 29.630 0.00 0.00 0.00 3.50
3282 3528 4.927782 TGTGTCTGGTGGCGCCAC 62.928 66.667 44.64 44.64 43.61 5.01
3305 3551 1.215647 CACCTTCGAGCGGCTAACT 59.784 57.895 0.60 0.00 0.00 2.24
3396 3645 2.836981 GGATAGCTCAGTATCAGGCCAT 59.163 50.000 5.01 0.00 31.87 4.40
3397 3646 4.026744 GGATAGCTCAGTATCAGGCCATA 58.973 47.826 5.01 0.00 31.87 2.74
3398 3647 4.653341 GGATAGCTCAGTATCAGGCCATAT 59.347 45.833 5.01 0.00 31.87 1.78
3400 3649 3.514539 AGCTCAGTATCAGGCCATATGA 58.485 45.455 5.01 0.00 0.00 2.15
3409 3658 7.664731 CAGTATCAGGCCATATGAAGAAATCTT 59.335 37.037 5.01 0.00 39.23 2.40
3411 3660 9.507329 GTATCAGGCCATATGAAGAAATCTTTA 57.493 33.333 5.01 0.00 36.11 1.85
3414 3663 8.713971 TCAGGCCATATGAAGAAATCTTTACTA 58.286 33.333 5.01 0.00 36.11 1.82
3493 3745 0.622136 TGCCATGACCTTCATCTGCT 59.378 50.000 0.00 0.00 34.28 4.24
3518 3770 2.039613 CTCTTTGAGCTCAGGGGAAACT 59.960 50.000 17.43 0.00 0.00 2.66
3535 3787 0.702902 ACTCTAGGTCCGGTTCTCCA 59.297 55.000 0.00 0.00 0.00 3.86
3579 3831 2.814336 GGCGTCACTTTCCTTCTTGAAT 59.186 45.455 0.00 0.00 0.00 2.57
3593 3847 3.860641 TCTTGAATGCGCTATCTTGTGA 58.139 40.909 9.73 2.09 0.00 3.58
3603 3857 3.262420 GCTATCTTGTGATCGTGGTGTT 58.738 45.455 0.00 0.00 34.32 3.32
3652 3918 4.214332 GGTTCGATTTGCTTCTCTTGTTCT 59.786 41.667 0.00 0.00 0.00 3.01
3662 3928 4.498177 GCTTCTCTTGTTCTGGGTTTTGTC 60.498 45.833 0.00 0.00 0.00 3.18
3682 3948 3.120782 GTCGGTTTAGCTGTGTAGTTTCG 59.879 47.826 0.00 0.00 0.00 3.46
3715 3981 2.842496 TGAGCATCCCATTTCTCTCTGT 59.158 45.455 0.00 0.00 0.00 3.41
3721 3987 2.903784 TCCCATTTCTCTCTGTTTCGGA 59.096 45.455 0.00 0.00 0.00 4.55
3735 4001 0.248012 TTCGGATGCCATGTACACGT 59.752 50.000 0.00 0.00 0.00 4.49
3783 4049 1.749634 CCCCTACCTGTACTCGTTCTG 59.250 57.143 0.00 0.00 0.00 3.02
3784 4050 1.134560 CCCTACCTGTACTCGTTCTGC 59.865 57.143 0.00 0.00 0.00 4.26
3799 4065 4.162320 TCGTTCTGCCTCCTTCTATCAATT 59.838 41.667 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 0.106519 ACTATGGTTGGAGGGCATGC 60.107 55.000 9.90 9.90 0.00 4.06
124 125 2.163010 CCTGATCAATGGTGTGACTTGC 59.837 50.000 0.00 0.00 0.00 4.01
213 216 1.604278 GCACTCTTGTTCAAGGTGGAC 59.396 52.381 22.45 11.89 0.00 4.02
254 259 7.387948 GTGTGTTATATGAGGCCCTAAATACTG 59.612 40.741 0.00 0.00 0.00 2.74
272 277 2.038863 TGGAGGGAGTGGTGTGTTAT 57.961 50.000 0.00 0.00 0.00 1.89
315 321 0.253610 TCTCCCACACACAAAACCGT 59.746 50.000 0.00 0.00 0.00 4.83
316 322 1.266718 CATCTCCCACACACAAAACCG 59.733 52.381 0.00 0.00 0.00 4.44
319 325 3.156293 CCATCATCTCCCACACACAAAA 58.844 45.455 0.00 0.00 0.00 2.44
353 359 7.992180 AAAGTGTTGATGAACAAGTTGATTC 57.008 32.000 10.54 10.05 43.77 2.52
355 361 8.225603 ACTAAAGTGTTGATGAACAAGTTGAT 57.774 30.769 10.54 0.00 43.77 2.57
553 560 7.552687 ACGGCAAGATTTCTATCAACATTTCTA 59.447 33.333 0.00 0.00 32.95 2.10
575 582 0.179184 ACGACAACAACAACAACGGC 60.179 50.000 0.00 0.00 0.00 5.68
619 722 1.910580 TTGGTCCATTCGCTCCCTCC 61.911 60.000 0.00 0.00 0.00 4.30
645 748 4.424626 CTGTCTCGGAAGATTCATCGAAA 58.575 43.478 0.00 0.00 40.84 3.46
646 749 3.181486 CCTGTCTCGGAAGATTCATCGAA 60.181 47.826 0.00 0.00 40.84 3.71
680 783 3.958860 GCACACCTGACCTGGGCT 61.959 66.667 0.00 0.00 34.99 5.19
754 857 0.035439 TAGTAGGTTTGCAGGGCAGC 60.035 55.000 0.00 0.00 40.61 5.25
843 955 3.685756 CGGAGAAGGATCGATACCTAGTC 59.314 52.174 14.33 13.19 36.67 2.59
890 1038 0.253044 CTGCGGGGAGAAGGAATCAA 59.747 55.000 0.00 0.00 0.00 2.57
891 1039 0.909610 ACTGCGGGGAGAAGGAATCA 60.910 55.000 0.00 0.00 0.00 2.57
900 1049 2.124983 CCATGTGACTGCGGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
941 1090 2.185387 CCGGTTTTTCTAGGAGAGGGA 58.815 52.381 0.00 0.00 0.00 4.20
942 1091 1.407025 GCCGGTTTTTCTAGGAGAGGG 60.407 57.143 1.90 0.00 0.00 4.30
943 1092 1.407025 GGCCGGTTTTTCTAGGAGAGG 60.407 57.143 1.90 0.00 0.00 3.69
944 1093 1.555533 AGGCCGGTTTTTCTAGGAGAG 59.444 52.381 1.90 0.00 0.00 3.20
945 1094 1.652947 AGGCCGGTTTTTCTAGGAGA 58.347 50.000 1.90 0.00 0.00 3.71
946 1095 3.840124 ATAGGCCGGTTTTTCTAGGAG 57.160 47.619 1.90 0.00 0.00 3.69
1484 1683 8.350722 CGGTCAAGTGATATAGTAACATGTAGT 58.649 37.037 0.00 0.00 0.00 2.73
1485 1684 8.565416 TCGGTCAAGTGATATAGTAACATGTAG 58.435 37.037 0.00 0.00 0.00 2.74
1486 1685 8.454570 TCGGTCAAGTGATATAGTAACATGTA 57.545 34.615 0.00 0.00 0.00 2.29
1487 1686 7.284716 TCTCGGTCAAGTGATATAGTAACATGT 59.715 37.037 0.00 0.00 0.00 3.21
1488 1687 7.591795 GTCTCGGTCAAGTGATATAGTAACATG 59.408 40.741 0.00 0.00 0.00 3.21
1489 1688 7.502895 AGTCTCGGTCAAGTGATATAGTAACAT 59.497 37.037 0.00 0.00 0.00 2.71
1490 1689 6.827251 AGTCTCGGTCAAGTGATATAGTAACA 59.173 38.462 0.00 0.00 0.00 2.41
1491 1690 7.261829 AGTCTCGGTCAAGTGATATAGTAAC 57.738 40.000 0.00 0.00 0.00 2.50
1492 1691 7.876936 AAGTCTCGGTCAAGTGATATAGTAA 57.123 36.000 0.00 0.00 0.00 2.24
1493 1692 7.338703 ACAAAGTCTCGGTCAAGTGATATAGTA 59.661 37.037 0.00 0.00 0.00 1.82
1494 1693 6.153000 ACAAAGTCTCGGTCAAGTGATATAGT 59.847 38.462 0.00 0.00 0.00 2.12
1495 1694 6.565234 ACAAAGTCTCGGTCAAGTGATATAG 58.435 40.000 0.00 0.00 0.00 1.31
1496 1695 6.525578 ACAAAGTCTCGGTCAAGTGATATA 57.474 37.500 0.00 0.00 0.00 0.86
1497 1696 5.407407 ACAAAGTCTCGGTCAAGTGATAT 57.593 39.130 0.00 0.00 0.00 1.63
1498 1697 4.866508 ACAAAGTCTCGGTCAAGTGATA 57.133 40.909 0.00 0.00 0.00 2.15
1499 1698 3.753294 ACAAAGTCTCGGTCAAGTGAT 57.247 42.857 0.00 0.00 0.00 3.06
1500 1699 3.536956 AACAAAGTCTCGGTCAAGTGA 57.463 42.857 0.00 0.00 0.00 3.41
1501 1700 3.741344 CCTAACAAAGTCTCGGTCAAGTG 59.259 47.826 0.00 0.00 0.00 3.16
1502 1701 3.387050 ACCTAACAAAGTCTCGGTCAAGT 59.613 43.478 0.00 0.00 0.00 3.16
1503 1702 3.741344 CACCTAACAAAGTCTCGGTCAAG 59.259 47.826 0.00 0.00 0.00 3.02
1504 1703 3.133362 ACACCTAACAAAGTCTCGGTCAA 59.867 43.478 0.00 0.00 0.00 3.18
1505 1704 2.696707 ACACCTAACAAAGTCTCGGTCA 59.303 45.455 0.00 0.00 0.00 4.02
1506 1705 3.243636 TGACACCTAACAAAGTCTCGGTC 60.244 47.826 0.00 0.00 32.41 4.79
1507 1706 2.696707 TGACACCTAACAAAGTCTCGGT 59.303 45.455 0.00 0.00 32.41 4.69
1508 1707 3.243771 ACTGACACCTAACAAAGTCTCGG 60.244 47.826 0.00 0.00 32.41 4.63
1509 1708 3.978687 ACTGACACCTAACAAAGTCTCG 58.021 45.455 0.00 0.00 32.41 4.04
1510 1709 5.234543 GTCAACTGACACCTAACAAAGTCTC 59.765 44.000 4.96 0.00 44.18 3.36
1511 1710 5.116882 GTCAACTGACACCTAACAAAGTCT 58.883 41.667 4.96 0.00 44.18 3.24
1512 1711 5.006746 CAGTCAACTGACACCTAACAAAGTC 59.993 44.000 12.20 0.00 46.59 3.01
1513 1712 4.876107 CAGTCAACTGACACCTAACAAAGT 59.124 41.667 12.20 0.00 46.59 2.66
1514 1713 5.409643 CAGTCAACTGACACCTAACAAAG 57.590 43.478 12.20 0.00 46.59 2.77
1526 1725 7.419750 AACTATGGTTAGGTTTCAGTCAACTGA 60.420 37.037 8.75 8.75 41.30 3.41
1527 1726 6.231211 ACTATGGTTAGGTTTCAGTCAACTG 58.769 40.000 3.69 3.69 45.08 3.16
1528 1727 6.435292 ACTATGGTTAGGTTTCAGTCAACT 57.565 37.500 0.00 0.00 0.00 3.16
1529 1728 7.506328 AAACTATGGTTAGGTTTCAGTCAAC 57.494 36.000 0.00 0.00 31.00 3.18
1538 1737 4.457949 CGCCAAGAAAACTATGGTTAGGTT 59.542 41.667 0.00 0.00 36.92 3.50
1544 1743 3.482436 TCAACGCCAAGAAAACTATGGT 58.518 40.909 0.00 0.00 36.57 3.55
1564 1784 0.041224 CAGAGCGTGCATGCATGATC 60.041 55.000 38.50 38.50 45.51 2.92
1575 1797 0.647410 CGGCTACAAATCAGAGCGTG 59.353 55.000 0.00 0.00 37.07 5.34
1806 2028 3.370315 GGTTCTCCAGCTTGATCATGTCT 60.370 47.826 10.05 5.37 0.00 3.41
1899 2121 1.376037 GAGCCCCTCGAACTTGGTG 60.376 63.158 0.00 0.00 0.00 4.17
1900 2122 2.593956 GGAGCCCCTCGAACTTGGT 61.594 63.158 0.00 0.00 0.00 3.67
1977 2199 2.752358 CAGCAGAAGGGCCTGACA 59.248 61.111 6.92 0.00 36.29 3.58
2458 2680 1.445410 CGTCGATCCGCTTGACCAA 60.445 57.895 0.00 0.00 35.13 3.67
2493 2715 0.179020 CCATGGCCATGTACACCGAT 60.179 55.000 37.30 3.42 37.11 4.18
2610 2832 2.659610 GCGACCAAGGAGACAGCT 59.340 61.111 0.00 0.00 0.00 4.24
2613 2835 0.321564 CAATGGCGACCAAGGAGACA 60.322 55.000 2.68 0.00 36.95 3.41
2666 2888 2.870341 CGTATGACATGCACGGGCG 61.870 63.158 4.58 0.00 45.35 6.13
2678 2913 7.916450 TGAATGAATGAATACACGTACGTATGA 59.084 33.333 22.34 9.55 32.39 2.15
2683 2918 6.354362 GCAATGAATGAATGAATACACGTACG 59.646 38.462 15.01 15.01 0.00 3.67
2684 2919 7.374228 CAGCAATGAATGAATGAATACACGTAC 59.626 37.037 0.00 0.00 0.00 3.67
2685 2920 7.279758 TCAGCAATGAATGAATGAATACACGTA 59.720 33.333 0.00 0.00 0.00 3.57
2686 2921 6.093909 TCAGCAATGAATGAATGAATACACGT 59.906 34.615 0.00 0.00 0.00 4.49
2687 2922 6.488817 TCAGCAATGAATGAATGAATACACG 58.511 36.000 0.00 0.00 0.00 4.49
2691 2926 9.744468 CTTCAATCAGCAATGAATGAATGAATA 57.256 29.630 15.10 1.45 41.83 1.75
2693 2928 7.608153 ACTTCAATCAGCAATGAATGAATGAA 58.392 30.769 14.41 14.41 40.98 2.57
2699 2934 8.024865 TGTAGAAACTTCAATCAGCAATGAATG 58.975 33.333 0.00 0.00 35.20 2.67
2721 2956 9.042008 ACACTTCAAGTTGTACAAACTATGTAG 57.958 33.333 10.51 11.67 45.00 2.74
2729 2964 8.516234 ACAACATTACACTTCAAGTTGTACAAA 58.484 29.630 10.51 0.00 45.20 2.83
2858 3103 1.787012 GCACCAAATTGCAAGGACTG 58.213 50.000 10.01 2.14 42.49 3.51
2919 3164 5.359756 CCGTATCTTGGTGATCAATGAAGA 58.640 41.667 12.37 12.37 36.65 2.87
2954 3200 4.103153 TCATCTGTACTCCATTTCCCATCC 59.897 45.833 0.00 0.00 0.00 3.51
2959 3205 4.698575 GTCCTCATCTGTACTCCATTTCC 58.301 47.826 0.00 0.00 0.00 3.13
2960 3206 4.098044 TCGTCCTCATCTGTACTCCATTTC 59.902 45.833 0.00 0.00 0.00 2.17
2973 3219 3.275143 TCTCTGTTCTCTCGTCCTCATC 58.725 50.000 0.00 0.00 0.00 2.92
2983 3229 5.136828 TCTCTCTGTGTTTCTCTGTTCTCT 58.863 41.667 0.00 0.00 0.00 3.10
2988 3234 5.606348 AAACTCTCTCTGTGTTTCTCTGT 57.394 39.130 0.00 0.00 37.71 3.41
2989 3235 7.429633 TCTAAAACTCTCTCTGTGTTTCTCTG 58.570 38.462 0.00 0.00 40.24 3.35
2990 3236 7.504238 TCTCTAAAACTCTCTCTGTGTTTCTCT 59.496 37.037 0.00 0.00 40.24 3.10
2991 3237 7.593644 GTCTCTAAAACTCTCTCTGTGTTTCTC 59.406 40.741 0.00 0.00 40.24 2.87
2992 3238 7.286775 AGTCTCTAAAACTCTCTCTGTGTTTCT 59.713 37.037 0.00 0.00 40.24 2.52
2993 3239 7.430441 AGTCTCTAAAACTCTCTCTGTGTTTC 58.570 38.462 0.00 0.00 40.24 2.78
2994 3240 7.354751 AGTCTCTAAAACTCTCTCTGTGTTT 57.645 36.000 0.00 0.00 42.11 2.83
2995 3241 6.969993 AGTCTCTAAAACTCTCTCTGTGTT 57.030 37.500 0.00 0.00 34.29 3.32
2996 3242 6.969993 AAGTCTCTAAAACTCTCTCTGTGT 57.030 37.500 0.00 0.00 0.00 3.72
2997 3243 7.429633 TGAAAGTCTCTAAAACTCTCTCTGTG 58.570 38.462 0.00 0.00 0.00 3.66
2998 3244 7.589958 TGAAAGTCTCTAAAACTCTCTCTGT 57.410 36.000 0.00 0.00 0.00 3.41
2999 3245 7.114247 CGTTGAAAGTCTCTAAAACTCTCTCTG 59.886 40.741 0.00 0.00 0.00 3.35
3000 3246 7.142680 CGTTGAAAGTCTCTAAAACTCTCTCT 58.857 38.462 0.00 0.00 0.00 3.10
3001 3247 6.129035 GCGTTGAAAGTCTCTAAAACTCTCTC 60.129 42.308 0.00 0.00 0.00 3.20
3002 3248 5.692654 GCGTTGAAAGTCTCTAAAACTCTCT 59.307 40.000 0.00 0.00 0.00 3.10
3003 3249 5.462398 TGCGTTGAAAGTCTCTAAAACTCTC 59.538 40.000 0.00 0.00 0.00 3.20
3004 3250 5.357257 TGCGTTGAAAGTCTCTAAAACTCT 58.643 37.500 0.00 0.00 0.00 3.24
3005 3251 5.652744 TGCGTTGAAAGTCTCTAAAACTC 57.347 39.130 0.00 0.00 0.00 3.01
3006 3252 6.147328 GGTATGCGTTGAAAGTCTCTAAAACT 59.853 38.462 0.00 0.00 0.00 2.66
3007 3253 6.304882 GGTATGCGTTGAAAGTCTCTAAAAC 58.695 40.000 0.00 0.00 0.00 2.43
3008 3254 5.410439 GGGTATGCGTTGAAAGTCTCTAAAA 59.590 40.000 0.00 0.00 0.00 1.52
3009 3255 4.933400 GGGTATGCGTTGAAAGTCTCTAAA 59.067 41.667 0.00 0.00 0.00 1.85
3010 3256 4.501071 GGGTATGCGTTGAAAGTCTCTAA 58.499 43.478 0.00 0.00 0.00 2.10
3011 3257 3.118884 GGGGTATGCGTTGAAAGTCTCTA 60.119 47.826 0.00 0.00 0.00 2.43
3012 3258 2.354805 GGGGTATGCGTTGAAAGTCTCT 60.355 50.000 0.00 0.00 0.00 3.10
3013 3259 2.007608 GGGGTATGCGTTGAAAGTCTC 58.992 52.381 0.00 0.00 0.00 3.36
3014 3260 1.628846 AGGGGTATGCGTTGAAAGTCT 59.371 47.619 0.00 0.00 0.00 3.24
3015 3261 2.007608 GAGGGGTATGCGTTGAAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
3016 3262 1.339727 GGAGGGGTATGCGTTGAAAGT 60.340 52.381 0.00 0.00 0.00 2.66
3017 3263 1.379527 GGAGGGGTATGCGTTGAAAG 58.620 55.000 0.00 0.00 0.00 2.62
3018 3264 0.034863 GGGAGGGGTATGCGTTGAAA 60.035 55.000 0.00 0.00 0.00 2.69
3019 3265 1.202099 TGGGAGGGGTATGCGTTGAA 61.202 55.000 0.00 0.00 0.00 2.69
3020 3266 1.613928 TGGGAGGGGTATGCGTTGA 60.614 57.895 0.00 0.00 0.00 3.18
3021 3267 1.451387 GTGGGAGGGGTATGCGTTG 60.451 63.158 0.00 0.00 0.00 4.10
3022 3268 1.279025 ATGTGGGAGGGGTATGCGTT 61.279 55.000 0.00 0.00 0.00 4.84
3023 3269 1.692749 ATGTGGGAGGGGTATGCGT 60.693 57.895 0.00 0.00 0.00 5.24
3024 3270 1.227943 CATGTGGGAGGGGTATGCG 60.228 63.158 0.00 0.00 0.00 4.73
3025 3271 1.151450 CCATGTGGGAGGGGTATGC 59.849 63.158 0.00 0.00 40.01 3.14
3026 3272 1.151450 GCCATGTGGGAGGGGTATG 59.849 63.158 0.54 0.00 40.01 2.39
3027 3273 1.308657 TGCCATGTGGGAGGGGTAT 60.309 57.895 0.54 0.00 40.01 2.73
3028 3274 2.126142 TGCCATGTGGGAGGGGTA 59.874 61.111 0.54 0.00 40.01 3.69
3029 3275 3.661648 GTGCCATGTGGGAGGGGT 61.662 66.667 0.54 0.00 40.01 4.95
3030 3276 4.802051 CGTGCCATGTGGGAGGGG 62.802 72.222 5.47 0.00 40.01 4.79
3031 3277 3.567579 AACGTGCCATGTGGGAGGG 62.568 63.158 15.91 4.50 44.22 4.30
3032 3278 2.034066 AACGTGCCATGTGGGAGG 59.966 61.111 11.04 11.04 45.22 4.30
3033 3279 1.300971 CTGAACGTGCCATGTGGGAG 61.301 60.000 0.54 0.00 40.01 4.30
3034 3280 1.302431 CTGAACGTGCCATGTGGGA 60.302 57.895 0.54 0.00 40.01 4.37
3035 3281 2.981560 GCTGAACGTGCCATGTGGG 61.982 63.158 0.54 0.00 40.85 4.61
3036 3282 1.915614 GAGCTGAACGTGCCATGTGG 61.916 60.000 0.00 0.00 38.53 4.17
3037 3283 0.952497 AGAGCTGAACGTGCCATGTG 60.952 55.000 0.00 0.00 0.00 3.21
3038 3284 0.250467 AAGAGCTGAACGTGCCATGT 60.250 50.000 0.00 0.00 0.00 3.21
3039 3285 1.725641 TAAGAGCTGAACGTGCCATG 58.274 50.000 0.00 0.00 0.00 3.66
3040 3286 2.698855 ATAAGAGCTGAACGTGCCAT 57.301 45.000 0.00 0.00 0.00 4.40
3041 3287 2.232696 TGTATAAGAGCTGAACGTGCCA 59.767 45.455 0.00 0.00 0.00 4.92
3042 3288 2.860735 CTGTATAAGAGCTGAACGTGCC 59.139 50.000 0.00 0.00 0.00 5.01
3043 3289 3.770666 TCTGTATAAGAGCTGAACGTGC 58.229 45.455 0.00 0.00 0.00 5.34
3044 3290 5.641709 TCTTCTGTATAAGAGCTGAACGTG 58.358 41.667 0.00 0.00 35.91 4.49
3045 3291 5.885881 CTCTTCTGTATAAGAGCTGAACGT 58.114 41.667 0.00 0.00 44.33 3.99
3054 3300 4.711846 TGCTCTTGCCTCTTCTGTATAAGA 59.288 41.667 0.00 0.00 38.71 2.10
3055 3301 5.016051 TGCTCTTGCCTCTTCTGTATAAG 57.984 43.478 0.00 0.00 38.71 1.73
3056 3302 5.363101 CATGCTCTTGCCTCTTCTGTATAA 58.637 41.667 0.00 0.00 38.71 0.98
3057 3303 4.202295 CCATGCTCTTGCCTCTTCTGTATA 60.202 45.833 0.00 0.00 38.71 1.47
3058 3304 3.433314 CCATGCTCTTGCCTCTTCTGTAT 60.433 47.826 0.00 0.00 38.71 2.29
3059 3305 2.093288 CCATGCTCTTGCCTCTTCTGTA 60.093 50.000 0.00 0.00 38.71 2.74
3060 3306 1.339824 CCATGCTCTTGCCTCTTCTGT 60.340 52.381 0.00 0.00 38.71 3.41
3061 3307 1.339824 ACCATGCTCTTGCCTCTTCTG 60.340 52.381 0.00 0.00 38.71 3.02
3062 3308 0.990374 ACCATGCTCTTGCCTCTTCT 59.010 50.000 0.00 0.00 38.71 2.85
3063 3309 1.831580 AACCATGCTCTTGCCTCTTC 58.168 50.000 0.00 0.00 38.71 2.87
3064 3310 3.439857 TTAACCATGCTCTTGCCTCTT 57.560 42.857 0.00 0.00 38.71 2.85
3065 3311 3.659183 ATTAACCATGCTCTTGCCTCT 57.341 42.857 0.00 0.00 38.71 3.69
3066 3312 4.455606 ACTATTAACCATGCTCTTGCCTC 58.544 43.478 0.00 0.00 38.71 4.70
3067 3313 4.510167 ACTATTAACCATGCTCTTGCCT 57.490 40.909 0.00 0.00 38.71 4.75
3068 3314 6.092807 GCTATACTATTAACCATGCTCTTGCC 59.907 42.308 0.00 0.00 38.71 4.52
3069 3315 6.650807 TGCTATACTATTAACCATGCTCTTGC 59.349 38.462 0.00 0.00 40.20 4.01
3070 3316 8.607441 TTGCTATACTATTAACCATGCTCTTG 57.393 34.615 0.00 0.00 0.00 3.02
3071 3317 9.057089 GTTTGCTATACTATTAACCATGCTCTT 57.943 33.333 0.00 0.00 0.00 2.85
3072 3318 8.210946 TGTTTGCTATACTATTAACCATGCTCT 58.789 33.333 0.00 0.00 0.00 4.09
3073 3319 8.378172 TGTTTGCTATACTATTAACCATGCTC 57.622 34.615 0.00 0.00 0.00 4.26
3074 3320 8.621286 GTTGTTTGCTATACTATTAACCATGCT 58.379 33.333 0.00 0.00 0.00 3.79
3075 3321 8.402472 TGTTGTTTGCTATACTATTAACCATGC 58.598 33.333 0.00 0.00 0.00 4.06
3076 3322 9.935682 CTGTTGTTTGCTATACTATTAACCATG 57.064 33.333 0.00 0.00 0.00 3.66
3077 3323 9.120538 CCTGTTGTTTGCTATACTATTAACCAT 57.879 33.333 0.00 0.00 0.00 3.55
3078 3324 8.104566 ACCTGTTGTTTGCTATACTATTAACCA 58.895 33.333 0.00 0.00 0.00 3.67
3079 3325 8.502105 ACCTGTTGTTTGCTATACTATTAACC 57.498 34.615 0.00 0.00 0.00 2.85
3086 3332 9.899661 TTCATATAACCTGTTGTTTGCTATACT 57.100 29.630 0.00 0.00 38.42 2.12
3088 3334 9.899661 ACTTCATATAACCTGTTGTTTGCTATA 57.100 29.630 0.00 0.00 38.42 1.31
3089 3335 8.807948 ACTTCATATAACCTGTTGTTTGCTAT 57.192 30.769 0.00 0.00 38.42 2.97
3090 3336 8.511321 CAACTTCATATAACCTGTTGTTTGCTA 58.489 33.333 0.00 0.00 38.42 3.49
3091 3337 7.370383 CAACTTCATATAACCTGTTGTTTGCT 58.630 34.615 0.00 0.00 38.42 3.91
3092 3338 6.089417 GCAACTTCATATAACCTGTTGTTTGC 59.911 38.462 0.00 0.00 38.42 3.68
3093 3339 6.586082 GGCAACTTCATATAACCTGTTGTTTG 59.414 38.462 0.00 0.00 38.42 2.93
3094 3340 6.266558 TGGCAACTTCATATAACCTGTTGTTT 59.733 34.615 0.00 0.00 37.62 2.83
3095 3341 5.772672 TGGCAACTTCATATAACCTGTTGTT 59.227 36.000 0.00 0.00 37.62 2.83
3096 3342 5.321102 TGGCAACTTCATATAACCTGTTGT 58.679 37.500 0.00 0.00 37.62 3.32
3097 3343 5.895636 TGGCAACTTCATATAACCTGTTG 57.104 39.130 0.00 0.00 38.13 3.33
3098 3344 5.951747 ACATGGCAACTTCATATAACCTGTT 59.048 36.000 0.00 0.00 37.61 3.16
3099 3345 5.509498 ACATGGCAACTTCATATAACCTGT 58.491 37.500 0.00 0.00 37.61 4.00
3100 3346 5.589855 TGACATGGCAACTTCATATAACCTG 59.410 40.000 0.00 0.00 37.61 4.00
3101 3347 5.590259 GTGACATGGCAACTTCATATAACCT 59.410 40.000 0.58 0.00 37.61 3.50
3102 3348 5.356751 TGTGACATGGCAACTTCATATAACC 59.643 40.000 0.58 0.00 37.61 2.85
3103 3349 6.435430 TGTGACATGGCAACTTCATATAAC 57.565 37.500 0.58 0.00 37.61 1.89
3104 3350 8.922931 ATATGTGACATGGCAACTTCATATAA 57.077 30.769 16.80 0.00 32.66 0.98
3105 3351 9.657419 CTATATGTGACATGGCAACTTCATATA 57.343 33.333 20.33 20.33 33.07 0.86
3106 3352 8.159447 ACTATATGTGACATGGCAACTTCATAT 58.841 33.333 20.29 20.29 33.68 1.78
3107 3353 7.508687 ACTATATGTGACATGGCAACTTCATA 58.491 34.615 0.58 7.49 37.61 2.15
3108 3354 6.359804 ACTATATGTGACATGGCAACTTCAT 58.640 36.000 0.58 5.06 37.61 2.57
3109 3355 5.744171 ACTATATGTGACATGGCAACTTCA 58.256 37.500 0.58 0.00 37.61 3.02
3110 3356 6.683974 AACTATATGTGACATGGCAACTTC 57.316 37.500 0.58 0.00 37.61 3.01
3111 3357 7.067008 GGTTAACTATATGTGACATGGCAACTT 59.933 37.037 0.58 0.00 37.61 2.66
3112 3358 6.542370 GGTTAACTATATGTGACATGGCAACT 59.458 38.462 0.58 0.00 37.61 3.16
3113 3359 6.542370 AGGTTAACTATATGTGACATGGCAAC 59.458 38.462 0.58 0.00 0.00 4.17
3114 3360 6.658849 AGGTTAACTATATGTGACATGGCAA 58.341 36.000 0.58 0.00 0.00 4.52
3115 3361 6.247229 AGGTTAACTATATGTGACATGGCA 57.753 37.500 8.61 0.00 0.00 4.92
3116 3362 8.848474 ATTAGGTTAACTATATGTGACATGGC 57.152 34.615 8.61 0.00 0.00 4.40
3120 3366 9.150028 TGGCTATTAGGTTAACTATATGTGACA 57.850 33.333 5.42 0.00 0.00 3.58
3121 3367 9.991906 TTGGCTATTAGGTTAACTATATGTGAC 57.008 33.333 5.42 0.00 0.00 3.67
3122 3368 9.991906 GTTGGCTATTAGGTTAACTATATGTGA 57.008 33.333 5.42 0.00 0.00 3.58
3123 3369 9.772973 TGTTGGCTATTAGGTTAACTATATGTG 57.227 33.333 5.42 0.00 0.00 3.21
3134 3380 7.661847 GCTCTTATACATGTTGGCTATTAGGTT 59.338 37.037 2.30 0.00 0.00 3.50
3135 3381 7.162082 GCTCTTATACATGTTGGCTATTAGGT 58.838 38.462 2.30 0.00 0.00 3.08
3136 3382 7.161404 TGCTCTTATACATGTTGGCTATTAGG 58.839 38.462 2.30 0.00 0.00 2.69
3137 3383 8.663025 CATGCTCTTATACATGTTGGCTATTAG 58.337 37.037 2.30 0.00 39.05 1.73
3138 3384 7.607607 CCATGCTCTTATACATGTTGGCTATTA 59.392 37.037 2.30 0.00 41.69 0.98
3139 3385 6.432162 CCATGCTCTTATACATGTTGGCTATT 59.568 38.462 2.30 0.00 41.69 1.73
3140 3386 5.942236 CCATGCTCTTATACATGTTGGCTAT 59.058 40.000 2.30 0.00 41.69 2.97
3141 3387 5.163205 ACCATGCTCTTATACATGTTGGCTA 60.163 40.000 2.30 0.00 41.69 3.93
3142 3388 4.139786 CCATGCTCTTATACATGTTGGCT 58.860 43.478 2.30 0.00 41.69 4.75
3143 3389 3.885297 ACCATGCTCTTATACATGTTGGC 59.115 43.478 2.30 0.77 41.69 4.52
3144 3390 7.566760 TTAACCATGCTCTTATACATGTTGG 57.433 36.000 2.30 4.63 41.69 3.77
3146 3392 9.003658 GCTATTAACCATGCTCTTATACATGTT 57.996 33.333 2.30 0.00 41.69 2.71
3147 3393 8.156820 TGCTATTAACCATGCTCTTATACATGT 58.843 33.333 2.69 2.69 41.69 3.21
3148 3394 8.552083 TGCTATTAACCATGCTCTTATACATG 57.448 34.615 0.00 0.00 42.67 3.21
3150 3396 9.875691 CTATGCTATTAACCATGCTCTTATACA 57.124 33.333 0.00 0.00 0.00 2.29
3151 3397 8.821894 GCTATGCTATTAACCATGCTCTTATAC 58.178 37.037 0.00 0.00 0.00 1.47
3152 3398 7.987458 GGCTATGCTATTAACCATGCTCTTATA 59.013 37.037 0.00 0.00 0.00 0.98
3153 3399 6.825721 GGCTATGCTATTAACCATGCTCTTAT 59.174 38.462 0.00 0.00 0.00 1.73
3154 3400 6.173339 GGCTATGCTATTAACCATGCTCTTA 58.827 40.000 0.00 0.00 0.00 2.10
3155 3401 5.006386 GGCTATGCTATTAACCATGCTCTT 58.994 41.667 0.00 0.00 0.00 2.85
3156 3402 4.042062 TGGCTATGCTATTAACCATGCTCT 59.958 41.667 0.00 0.00 0.00 4.09
3157 3403 4.326826 TGGCTATGCTATTAACCATGCTC 58.673 43.478 0.00 0.00 0.00 4.26
3158 3404 4.371624 TGGCTATGCTATTAACCATGCT 57.628 40.909 0.00 0.00 0.00 3.79
3159 3405 4.520492 AGTTGGCTATGCTATTAACCATGC 59.480 41.667 0.00 0.00 0.00 4.06
3160 3406 5.563475 GCAGTTGGCTATGCTATTAACCATG 60.563 44.000 2.58 0.00 39.38 3.66
3161 3407 4.520492 GCAGTTGGCTATGCTATTAACCAT 59.480 41.667 2.58 0.00 39.38 3.55
3162 3408 3.882888 GCAGTTGGCTATGCTATTAACCA 59.117 43.478 2.58 0.00 39.38 3.67
3163 3409 4.489679 GCAGTTGGCTATGCTATTAACC 57.510 45.455 2.58 0.00 39.38 2.85
3178 3424 4.556104 GCAACATCATATAGCCAGCAGTTG 60.556 45.833 0.00 0.00 37.47 3.16
3179 3425 3.567164 GCAACATCATATAGCCAGCAGTT 59.433 43.478 0.00 0.00 0.00 3.16
3180 3426 3.144506 GCAACATCATATAGCCAGCAGT 58.855 45.455 0.00 0.00 0.00 4.40
3181 3427 2.486982 GGCAACATCATATAGCCAGCAG 59.513 50.000 0.00 0.00 44.59 4.24
3182 3428 2.507484 GGCAACATCATATAGCCAGCA 58.493 47.619 0.00 0.00 44.59 4.41
3197 3443 6.230472 TGGTGACTATATATGACATGGCAAC 58.770 40.000 4.70 0.00 0.00 4.17
3198 3444 6.432403 TGGTGACTATATATGACATGGCAA 57.568 37.500 4.70 0.00 0.00 4.52
3199 3445 6.625532 ATGGTGACTATATATGACATGGCA 57.374 37.500 2.18 2.18 0.00 4.92
3200 3446 7.928307 AAATGGTGACTATATATGACATGGC 57.072 36.000 0.00 0.00 0.00 4.40
3213 3459 9.416284 TGTATGAGTGACTATAAATGGTGACTA 57.584 33.333 0.00 0.00 36.03 2.59
3214 3460 8.306313 TGTATGAGTGACTATAAATGGTGACT 57.694 34.615 0.00 0.00 38.31 3.41
3215 3461 8.818057 GTTGTATGAGTGACTATAAATGGTGAC 58.182 37.037 0.00 0.00 0.00 3.67
3216 3462 8.536175 TGTTGTATGAGTGACTATAAATGGTGA 58.464 33.333 0.00 0.00 0.00 4.02
3217 3463 8.716646 TGTTGTATGAGTGACTATAAATGGTG 57.283 34.615 0.00 0.00 0.00 4.17
3218 3464 9.733556 TTTGTTGTATGAGTGACTATAAATGGT 57.266 29.630 0.00 0.00 0.00 3.55
3224 3470 9.582431 GCTAACTTTGTTGTATGAGTGACTATA 57.418 33.333 0.00 0.00 0.00 1.31
3225 3471 8.314751 AGCTAACTTTGTTGTATGAGTGACTAT 58.685 33.333 0.00 0.00 0.00 2.12
3226 3472 7.667557 AGCTAACTTTGTTGTATGAGTGACTA 58.332 34.615 0.00 0.00 0.00 2.59
3227 3473 6.525629 AGCTAACTTTGTTGTATGAGTGACT 58.474 36.000 0.00 0.00 0.00 3.41
3228 3474 6.787085 AGCTAACTTTGTTGTATGAGTGAC 57.213 37.500 0.00 0.00 0.00 3.67
3231 3477 9.601217 CCTTATAGCTAACTTTGTTGTATGAGT 57.399 33.333 0.00 0.00 0.00 3.41
3232 3478 9.601217 ACCTTATAGCTAACTTTGTTGTATGAG 57.399 33.333 0.00 0.00 0.00 2.90
3233 3479 9.953565 AACCTTATAGCTAACTTTGTTGTATGA 57.046 29.630 0.00 0.00 0.00 2.15
3237 3483 9.433153 GTCTAACCTTATAGCTAACTTTGTTGT 57.567 33.333 0.00 0.00 0.00 3.32
3238 3484 8.592998 CGTCTAACCTTATAGCTAACTTTGTTG 58.407 37.037 0.00 0.00 0.00 3.33
3239 3485 8.309656 ACGTCTAACCTTATAGCTAACTTTGTT 58.690 33.333 0.00 1.18 0.00 2.83
3240 3486 7.758528 CACGTCTAACCTTATAGCTAACTTTGT 59.241 37.037 0.00 0.00 0.00 2.83
3241 3487 7.758528 ACACGTCTAACCTTATAGCTAACTTTG 59.241 37.037 0.00 0.00 0.00 2.77
3242 3488 7.758528 CACACGTCTAACCTTATAGCTAACTTT 59.241 37.037 0.00 0.00 0.00 2.66
3243 3489 7.094032 ACACACGTCTAACCTTATAGCTAACTT 60.094 37.037 0.00 0.00 0.00 2.66
3244 3490 6.376581 ACACACGTCTAACCTTATAGCTAACT 59.623 38.462 0.00 0.00 0.00 2.24
3245 3491 6.558909 ACACACGTCTAACCTTATAGCTAAC 58.441 40.000 0.00 0.00 0.00 2.34
3246 3492 6.764308 ACACACGTCTAACCTTATAGCTAA 57.236 37.500 0.00 0.00 0.00 3.09
3247 3493 6.369059 GACACACGTCTAACCTTATAGCTA 57.631 41.667 0.00 0.00 39.22 3.32
3248 3494 5.246145 GACACACGTCTAACCTTATAGCT 57.754 43.478 0.00 0.00 39.22 3.32
3261 3507 3.036084 CGCCACCAGACACACGTC 61.036 66.667 0.00 0.00 42.95 4.34
3305 3551 1.987855 CCGCCAAGTCTGTAGGGGA 60.988 63.158 0.00 0.00 37.54 4.81
3340 3589 3.501349 TCCGAAATTTGTGATGGGGAAA 58.499 40.909 0.00 0.00 0.00 3.13
3366 3615 0.179000 CTGAGCTATCCCAAAGCCGT 59.821 55.000 0.00 0.00 41.02 5.68
3396 3645 7.499232 GGCAAGCCTAGTAAAGATTTCTTCATA 59.501 37.037 3.29 0.00 34.61 2.15
3397 3646 6.319911 GGCAAGCCTAGTAAAGATTTCTTCAT 59.680 38.462 3.29 0.00 34.61 2.57
3398 3647 5.648092 GGCAAGCCTAGTAAAGATTTCTTCA 59.352 40.000 3.29 0.00 34.61 3.02
3400 3649 4.636206 CGGCAAGCCTAGTAAAGATTTCTT 59.364 41.667 9.73 0.00 37.91 2.52
3409 3658 0.830648 AGCATCGGCAAGCCTAGTAA 59.169 50.000 9.73 0.00 44.61 2.24
3411 3660 1.153289 CAGCATCGGCAAGCCTAGT 60.153 57.895 9.73 0.00 44.61 2.57
3481 3733 0.043940 AGAGGGGAGCAGATGAAGGT 59.956 55.000 0.00 0.00 0.00 3.50
3493 3745 0.911525 CCCTGAGCTCAAAGAGGGGA 60.912 60.000 26.59 0.00 41.51 4.81
3518 3770 0.997363 TCTGGAGAACCGGACCTAGA 59.003 55.000 9.46 3.75 45.56 2.43
3564 3816 2.508526 AGCGCATTCAAGAAGGAAAGT 58.491 42.857 11.47 0.00 0.00 2.66
3579 3831 1.559831 CACGATCACAAGATAGCGCA 58.440 50.000 11.47 0.00 33.72 6.09
3593 3847 1.079819 CGCTCAGGAACACCACGAT 60.080 57.895 0.00 0.00 0.00 3.73
3603 3857 0.904649 ACATCCAACATCGCTCAGGA 59.095 50.000 0.00 0.00 0.00 3.86
3652 3918 1.950909 CAGCTAAACCGACAAAACCCA 59.049 47.619 0.00 0.00 0.00 4.51
3662 3928 3.054878 ACGAAACTACACAGCTAAACCG 58.945 45.455 0.00 0.00 0.00 4.44
3682 3948 2.033141 TGCTCAGCCCAAGCAGAC 59.967 61.111 0.00 0.00 44.51 3.51
3715 3981 1.338294 ACGTGTACATGGCATCCGAAA 60.338 47.619 19.05 0.00 0.00 3.46
3721 3987 1.195115 AGGAGACGTGTACATGGCAT 58.805 50.000 22.87 8.05 0.00 4.40
3735 4001 7.176515 ACATTACATAACACAAATGCAAGGAGA 59.823 33.333 0.00 0.00 33.57 3.71
3783 4049 8.940952 GTGTATCATTAATTGATAGAAGGAGGC 58.059 37.037 7.45 0.00 45.74 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.