Multiple sequence alignment - TraesCS7D01G117700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G117700 chr7D 100.000 2367 0 0 1 2367 72784778 72787144 0.000000e+00 4372.0
1 TraesCS7D01G117700 chr4B 91.866 2004 152 11 371 2367 213964963 213966962 0.000000e+00 2787.0
2 TraesCS7D01G117700 chr4B 85.263 95 14 0 215 309 609668697 609668791 5.380000e-17 99.0
3 TraesCS7D01G117700 chr5D 94.098 1508 88 1 860 2367 489744315 489742809 0.000000e+00 2290.0
4 TraesCS7D01G117700 chr5D 93.850 439 20 6 371 805 489744750 489744315 0.000000e+00 654.0
5 TraesCS7D01G117700 chr6D 92.510 1562 116 1 806 2367 219292398 219290838 0.000000e+00 2235.0
6 TraesCS7D01G117700 chr6D 94.118 442 23 3 371 809 219292801 219292360 0.000000e+00 669.0
7 TraesCS7D01G117700 chr2D 92.507 1508 97 9 860 2367 232179607 232178116 0.000000e+00 2145.0
8 TraesCS7D01G117700 chr2D 95.216 439 17 4 371 805 232180045 232179607 0.000000e+00 691.0
9 TraesCS7D01G117700 chr4D 92.308 1508 112 4 860 2367 200714917 200713414 0.000000e+00 2139.0
10 TraesCS7D01G117700 chr4D 94.977 438 19 3 371 805 200715354 200714917 0.000000e+00 684.0
11 TraesCS7D01G117700 chr2A 91.976 1508 120 1 860 2367 460472824 460471318 0.000000e+00 2113.0
12 TraesCS7D01G117700 chr2A 91.633 1506 124 2 862 2367 299510065 299508562 0.000000e+00 2082.0
13 TraesCS7D01G117700 chr2A 94.064 438 23 3 371 805 299510504 299510067 0.000000e+00 662.0
14 TraesCS7D01G117700 chr3D 91.733 1512 103 7 860 2367 497289268 497290761 0.000000e+00 2080.0
15 TraesCS7D01G117700 chr3D 92.704 1398 101 1 970 2367 172531322 172529926 0.000000e+00 2015.0
16 TraesCS7D01G117700 chr3D 93.805 452 23 4 364 810 71520946 71520495 0.000000e+00 675.0
17 TraesCS7D01G117700 chr7B 91.313 1508 124 3 860 2367 193201432 193202932 0.000000e+00 2052.0
18 TraesCS7D01G117700 chr7B 94.533 439 20 4 371 805 193200994 193201432 0.000000e+00 675.0
19 TraesCS7D01G117700 chr7A 94.582 443 20 4 371 809 540916368 540916810 0.000000e+00 682.0
20 TraesCS7D01G117700 chr1B 93.478 92 6 0 218 309 592169599 592169508 1.140000e-28 137.0
21 TraesCS7D01G117700 chr1B 89.130 92 10 0 218 309 10917252 10917161 5.350000e-22 115.0
22 TraesCS7D01G117700 chr1B 94.545 55 3 0 1 55 627618484 627618430 4.190000e-13 86.1
23 TraesCS7D01G117700 chr1D 91.304 92 8 0 218 309 436986286 436986195 2.470000e-25 126.0
24 TraesCS7D01G117700 chr3B 90.217 92 9 0 218 309 49419179 49419270 1.150000e-23 121.0
25 TraesCS7D01G117700 chr3B 94.545 55 2 1 1 55 11081770 11081823 1.510000e-12 84.2
26 TraesCS7D01G117700 chr5B 88.043 92 11 0 218 309 261348963 261349054 2.490000e-20 110.0
27 TraesCS7D01G117700 chr5B 96.078 51 2 0 1 51 598986365 598986415 1.510000e-12 84.2
28 TraesCS7D01G117700 chr2B 94.545 55 3 0 1 55 865670 865616 4.190000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G117700 chr7D 72784778 72787144 2366 False 4372.0 4372 100.0000 1 2367 1 chr7D.!!$F1 2366
1 TraesCS7D01G117700 chr4B 213964963 213966962 1999 False 2787.0 2787 91.8660 371 2367 1 chr4B.!!$F1 1996
2 TraesCS7D01G117700 chr5D 489742809 489744750 1941 True 1472.0 2290 93.9740 371 2367 2 chr5D.!!$R1 1996
3 TraesCS7D01G117700 chr6D 219290838 219292801 1963 True 1452.0 2235 93.3140 371 2367 2 chr6D.!!$R1 1996
4 TraesCS7D01G117700 chr2D 232178116 232180045 1929 True 1418.0 2145 93.8615 371 2367 2 chr2D.!!$R1 1996
5 TraesCS7D01G117700 chr4D 200713414 200715354 1940 True 1411.5 2139 93.6425 371 2367 2 chr4D.!!$R1 1996
6 TraesCS7D01G117700 chr2A 460471318 460472824 1506 True 2113.0 2113 91.9760 860 2367 1 chr2A.!!$R1 1507
7 TraesCS7D01G117700 chr2A 299508562 299510504 1942 True 1372.0 2082 92.8485 371 2367 2 chr2A.!!$R2 1996
8 TraesCS7D01G117700 chr3D 497289268 497290761 1493 False 2080.0 2080 91.7330 860 2367 1 chr3D.!!$F1 1507
9 TraesCS7D01G117700 chr3D 172529926 172531322 1396 True 2015.0 2015 92.7040 970 2367 1 chr3D.!!$R2 1397
10 TraesCS7D01G117700 chr7B 193200994 193202932 1938 False 1363.5 2052 92.9230 371 2367 2 chr7B.!!$F1 1996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.034089 ATCTGCCTAGGGTGTTTGCC 60.034 55.0 11.72 0.0 0.00 4.52 F
1230 1295 0.033920 TAGATGGCTGCGATGCGATT 59.966 50.0 0.66 0.0 31.72 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1394 0.106149 CACCCGTACCTTGCCTATCC 59.894 60.000 0.0 0.0 0.0 2.59 R
2059 2124 1.595109 GATGATGGACGCCGCATGA 60.595 57.895 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.286170 TGATTACTATCTGTACATCAGGTCTAC 57.714 37.037 0.00 0.00 43.76 2.59
27 28 9.509956 GATTACTATCTGTACATCAGGTCTACT 57.490 37.037 0.00 0.00 43.76 2.57
28 29 9.869667 ATTACTATCTGTACATCAGGTCTACTT 57.130 33.333 0.00 0.00 43.76 2.24
29 30 7.575414 ACTATCTGTACATCAGGTCTACTTG 57.425 40.000 0.00 0.00 43.76 3.16
30 31 7.347252 ACTATCTGTACATCAGGTCTACTTGA 58.653 38.462 0.00 0.00 43.76 3.02
31 32 8.001875 ACTATCTGTACATCAGGTCTACTTGAT 58.998 37.037 0.00 2.15 42.43 2.57
67 68 5.705609 TTTTGCCTGTGACCTTCTATTTC 57.294 39.130 0.00 0.00 0.00 2.17
68 69 4.365514 TTGCCTGTGACCTTCTATTTCA 57.634 40.909 0.00 0.00 0.00 2.69
69 70 4.574674 TGCCTGTGACCTTCTATTTCAT 57.425 40.909 0.00 0.00 0.00 2.57
70 71 4.922206 TGCCTGTGACCTTCTATTTCATT 58.078 39.130 0.00 0.00 0.00 2.57
71 72 4.701651 TGCCTGTGACCTTCTATTTCATTG 59.298 41.667 0.00 0.00 0.00 2.82
72 73 4.439289 GCCTGTGACCTTCTATTTCATTGC 60.439 45.833 0.00 0.00 0.00 3.56
73 74 4.701651 CCTGTGACCTTCTATTTCATTGCA 59.298 41.667 0.00 0.00 0.00 4.08
74 75 5.183713 CCTGTGACCTTCTATTTCATTGCAA 59.816 40.000 0.00 0.00 0.00 4.08
75 76 6.127535 CCTGTGACCTTCTATTTCATTGCAAT 60.128 38.462 5.99 5.99 0.00 3.56
76 77 6.855836 TGTGACCTTCTATTTCATTGCAATC 58.144 36.000 9.53 0.00 0.00 2.67
77 78 5.967674 GTGACCTTCTATTTCATTGCAATCG 59.032 40.000 9.53 5.77 0.00 3.34
78 79 5.879777 TGACCTTCTATTTCATTGCAATCGA 59.120 36.000 9.53 8.14 0.00 3.59
79 80 6.037500 TGACCTTCTATTTCATTGCAATCGAG 59.962 38.462 9.53 0.00 0.00 4.04
80 81 5.210715 CCTTCTATTTCATTGCAATCGAGC 58.789 41.667 9.53 0.00 0.00 5.03
81 82 5.008415 CCTTCTATTTCATTGCAATCGAGCT 59.992 40.000 9.53 0.00 34.99 4.09
82 83 6.203530 CCTTCTATTTCATTGCAATCGAGCTA 59.796 38.462 9.53 5.87 34.99 3.32
83 84 6.775939 TCTATTTCATTGCAATCGAGCTAG 57.224 37.500 9.53 13.34 34.99 3.42
84 85 6.515832 TCTATTTCATTGCAATCGAGCTAGA 58.484 36.000 9.53 14.94 34.99 2.43
85 86 4.864916 TTTCATTGCAATCGAGCTAGAC 57.135 40.909 9.53 0.00 34.99 2.59
86 87 3.525268 TCATTGCAATCGAGCTAGACA 57.475 42.857 9.53 0.00 34.99 3.41
87 88 4.063998 TCATTGCAATCGAGCTAGACAT 57.936 40.909 9.53 0.00 34.99 3.06
88 89 3.805971 TCATTGCAATCGAGCTAGACATG 59.194 43.478 9.53 2.95 34.99 3.21
89 90 2.229675 TGCAATCGAGCTAGACATGG 57.770 50.000 0.00 0.00 34.99 3.66
90 91 1.756538 TGCAATCGAGCTAGACATGGA 59.243 47.619 0.00 0.01 34.99 3.41
91 92 2.366590 TGCAATCGAGCTAGACATGGAT 59.633 45.455 0.00 0.00 34.99 3.41
92 93 2.735663 GCAATCGAGCTAGACATGGATG 59.264 50.000 0.00 0.00 0.00 3.51
93 94 3.324117 CAATCGAGCTAGACATGGATGG 58.676 50.000 0.00 0.00 0.00 3.51
94 95 2.073252 TCGAGCTAGACATGGATGGT 57.927 50.000 0.00 0.00 0.00 3.55
95 96 2.388735 TCGAGCTAGACATGGATGGTT 58.611 47.619 0.00 0.00 0.00 3.67
96 97 2.101415 TCGAGCTAGACATGGATGGTTG 59.899 50.000 0.00 0.00 0.00 3.77
97 98 2.159043 CGAGCTAGACATGGATGGTTGT 60.159 50.000 0.00 0.00 0.00 3.32
98 99 3.679917 CGAGCTAGACATGGATGGTTGTT 60.680 47.826 0.00 0.00 0.00 2.83
99 100 3.873952 GAGCTAGACATGGATGGTTGTTC 59.126 47.826 0.00 0.00 0.00 3.18
100 101 3.521126 AGCTAGACATGGATGGTTGTTCT 59.479 43.478 0.00 0.00 0.00 3.01
101 102 3.873952 GCTAGACATGGATGGTTGTTCTC 59.126 47.826 0.00 0.00 0.00 2.87
102 103 4.623886 GCTAGACATGGATGGTTGTTCTCA 60.624 45.833 0.00 0.00 0.00 3.27
103 104 3.947868 AGACATGGATGGTTGTTCTCAG 58.052 45.455 0.00 0.00 0.00 3.35
104 105 3.328931 AGACATGGATGGTTGTTCTCAGT 59.671 43.478 0.00 0.00 0.00 3.41
105 106 3.679389 ACATGGATGGTTGTTCTCAGTC 58.321 45.455 0.00 0.00 0.00 3.51
106 107 2.859165 TGGATGGTTGTTCTCAGTCC 57.141 50.000 0.00 0.00 0.00 3.85
107 108 2.054021 TGGATGGTTGTTCTCAGTCCA 58.946 47.619 0.00 0.00 35.35 4.02
108 109 2.038952 TGGATGGTTGTTCTCAGTCCAG 59.961 50.000 0.00 0.00 34.77 3.86
109 110 2.079925 GATGGTTGTTCTCAGTCCAGC 58.920 52.381 0.00 0.00 34.77 4.85
110 111 1.131638 TGGTTGTTCTCAGTCCAGCT 58.868 50.000 0.00 0.00 0.00 4.24
111 112 2.325484 TGGTTGTTCTCAGTCCAGCTA 58.675 47.619 0.00 0.00 0.00 3.32
112 113 2.703536 TGGTTGTTCTCAGTCCAGCTAA 59.296 45.455 0.00 0.00 0.00 3.09
113 114 3.244215 TGGTTGTTCTCAGTCCAGCTAAG 60.244 47.826 0.00 0.00 0.00 2.18
114 115 3.006967 GGTTGTTCTCAGTCCAGCTAAGA 59.993 47.826 0.00 0.00 0.00 2.10
115 116 4.241681 GTTGTTCTCAGTCCAGCTAAGAG 58.758 47.826 0.00 0.00 0.00 2.85
116 117 3.767711 TGTTCTCAGTCCAGCTAAGAGA 58.232 45.455 0.00 0.00 33.84 3.10
117 118 4.348486 TGTTCTCAGTCCAGCTAAGAGAT 58.652 43.478 0.00 0.00 35.50 2.75
118 119 4.774726 TGTTCTCAGTCCAGCTAAGAGATT 59.225 41.667 0.00 0.00 35.50 2.40
119 120 5.247110 TGTTCTCAGTCCAGCTAAGAGATTT 59.753 40.000 0.00 0.00 35.50 2.17
120 121 6.437477 TGTTCTCAGTCCAGCTAAGAGATTTA 59.563 38.462 0.00 0.00 35.50 1.40
121 122 6.458232 TCTCAGTCCAGCTAAGAGATTTAC 57.542 41.667 0.00 0.00 30.94 2.01
122 123 5.952347 TCTCAGTCCAGCTAAGAGATTTACA 59.048 40.000 0.00 0.00 30.94 2.41
123 124 6.437477 TCTCAGTCCAGCTAAGAGATTTACAA 59.563 38.462 0.00 0.00 30.94 2.41
124 125 6.398918 TCAGTCCAGCTAAGAGATTTACAAC 58.601 40.000 0.00 0.00 0.00 3.32
125 126 6.014584 TCAGTCCAGCTAAGAGATTTACAACA 60.015 38.462 0.00 0.00 0.00 3.33
126 127 6.091441 CAGTCCAGCTAAGAGATTTACAACAC 59.909 42.308 0.00 0.00 0.00 3.32
127 128 5.932303 GTCCAGCTAAGAGATTTACAACACA 59.068 40.000 0.00 0.00 0.00 3.72
128 129 5.932303 TCCAGCTAAGAGATTTACAACACAC 59.068 40.000 0.00 0.00 0.00 3.82
129 130 5.700832 CCAGCTAAGAGATTTACAACACACA 59.299 40.000 0.00 0.00 0.00 3.72
130 131 6.204688 CCAGCTAAGAGATTTACAACACACAA 59.795 38.462 0.00 0.00 0.00 3.33
131 132 7.072030 CAGCTAAGAGATTTACAACACACAAC 58.928 38.462 0.00 0.00 0.00 3.32
132 133 6.992715 AGCTAAGAGATTTACAACACACAACT 59.007 34.615 0.00 0.00 0.00 3.16
133 134 7.171678 AGCTAAGAGATTTACAACACACAACTC 59.828 37.037 0.00 0.00 0.00 3.01
134 135 7.042051 GCTAAGAGATTTACAACACACAACTCA 60.042 37.037 0.00 0.00 0.00 3.41
135 136 7.624360 AAGAGATTTACAACACACAACTCAA 57.376 32.000 0.00 0.00 0.00 3.02
136 137 7.016361 AGAGATTTACAACACACAACTCAAC 57.984 36.000 0.00 0.00 0.00 3.18
137 138 6.597672 AGAGATTTACAACACACAACTCAACA 59.402 34.615 0.00 0.00 0.00 3.33
138 139 6.551736 AGATTTACAACACACAACTCAACAC 58.448 36.000 0.00 0.00 0.00 3.32
139 140 5.690997 TTTACAACACACAACTCAACACA 57.309 34.783 0.00 0.00 0.00 3.72
140 141 5.888691 TTACAACACACAACTCAACACAT 57.111 34.783 0.00 0.00 0.00 3.21
141 142 4.355543 ACAACACACAACTCAACACATC 57.644 40.909 0.00 0.00 0.00 3.06
142 143 4.009675 ACAACACACAACTCAACACATCT 58.990 39.130 0.00 0.00 0.00 2.90
143 144 5.182487 ACAACACACAACTCAACACATCTA 58.818 37.500 0.00 0.00 0.00 1.98
144 145 5.294306 ACAACACACAACTCAACACATCTAG 59.706 40.000 0.00 0.00 0.00 2.43
145 146 3.809832 ACACACAACTCAACACATCTAGC 59.190 43.478 0.00 0.00 0.00 3.42
146 147 3.809279 CACACAACTCAACACATCTAGCA 59.191 43.478 0.00 0.00 0.00 3.49
147 148 4.060900 ACACAACTCAACACATCTAGCAG 58.939 43.478 0.00 0.00 0.00 4.24
148 149 3.070018 ACAACTCAACACATCTAGCAGC 58.930 45.455 0.00 0.00 0.00 5.25
149 150 2.393271 ACTCAACACATCTAGCAGCC 57.607 50.000 0.00 0.00 0.00 4.85
150 151 1.905215 ACTCAACACATCTAGCAGCCT 59.095 47.619 0.00 0.00 0.00 4.58
151 152 3.099905 ACTCAACACATCTAGCAGCCTA 58.900 45.455 0.00 0.00 0.00 3.93
152 153 3.131933 ACTCAACACATCTAGCAGCCTAG 59.868 47.826 0.00 0.00 42.01 3.02
153 154 2.159043 TCAACACATCTAGCAGCCTAGC 60.159 50.000 0.00 0.00 40.73 3.42
154 155 1.489481 ACACATCTAGCAGCCTAGCA 58.511 50.000 0.00 0.00 40.73 3.49
155 156 1.411977 ACACATCTAGCAGCCTAGCAG 59.588 52.381 0.00 0.00 40.73 4.24
156 157 1.411977 CACATCTAGCAGCCTAGCAGT 59.588 52.381 0.00 0.00 40.73 4.40
157 158 2.625314 CACATCTAGCAGCCTAGCAGTA 59.375 50.000 0.00 0.00 40.73 2.74
158 159 2.625790 ACATCTAGCAGCCTAGCAGTAC 59.374 50.000 0.00 0.00 40.73 2.73
159 160 2.738587 TCTAGCAGCCTAGCAGTACT 57.261 50.000 0.00 0.00 40.73 2.73
160 161 3.859061 TCTAGCAGCCTAGCAGTACTA 57.141 47.619 0.00 0.00 40.73 1.82
161 162 3.745799 TCTAGCAGCCTAGCAGTACTAG 58.254 50.000 0.00 0.00 46.95 2.57
162 163 1.036707 AGCAGCCTAGCAGTACTAGC 58.963 55.000 0.00 1.88 46.17 3.42
163 164 0.747255 GCAGCCTAGCAGTACTAGCA 59.253 55.000 16.27 5.28 46.17 3.49
164 165 1.137086 GCAGCCTAGCAGTACTAGCAA 59.863 52.381 16.27 0.00 46.17 3.91
165 166 2.815478 CAGCCTAGCAGTACTAGCAAC 58.185 52.381 16.27 0.00 46.17 4.17
166 167 2.166459 CAGCCTAGCAGTACTAGCAACA 59.834 50.000 16.27 4.16 46.17 3.33
167 168 2.832129 AGCCTAGCAGTACTAGCAACAA 59.168 45.455 16.27 2.59 46.17 2.83
168 169 2.930682 GCCTAGCAGTACTAGCAACAAC 59.069 50.000 16.27 2.57 46.17 3.32
169 170 3.616560 GCCTAGCAGTACTAGCAACAACA 60.617 47.826 16.27 0.00 46.17 3.33
170 171 4.566004 CCTAGCAGTACTAGCAACAACAA 58.434 43.478 16.27 0.00 46.17 2.83
171 172 4.994852 CCTAGCAGTACTAGCAACAACAAA 59.005 41.667 16.27 0.00 46.17 2.83
172 173 5.468746 CCTAGCAGTACTAGCAACAACAAAA 59.531 40.000 16.27 0.00 46.17 2.44
173 174 5.828299 AGCAGTACTAGCAACAACAAAAA 57.172 34.783 16.27 0.00 0.00 1.94
194 195 6.899393 AAAAACACATCTAGCATCCAAGAA 57.101 33.333 0.00 0.00 0.00 2.52
195 196 6.899393 AAAACACATCTAGCATCCAAGAAA 57.101 33.333 0.00 0.00 0.00 2.52
196 197 7.472334 AAAACACATCTAGCATCCAAGAAAT 57.528 32.000 0.00 0.00 0.00 2.17
197 198 7.472334 AAACACATCTAGCATCCAAGAAATT 57.528 32.000 0.00 0.00 0.00 1.82
198 199 6.446781 ACACATCTAGCATCCAAGAAATTG 57.553 37.500 0.00 0.00 0.00 2.32
199 200 5.163581 ACACATCTAGCATCCAAGAAATTGC 60.164 40.000 0.00 0.00 35.34 3.56
200 201 4.340381 ACATCTAGCATCCAAGAAATTGCC 59.660 41.667 0.00 0.00 35.71 4.52
201 202 4.240881 TCTAGCATCCAAGAAATTGCCT 57.759 40.909 0.00 0.00 35.71 4.75
202 203 4.603131 TCTAGCATCCAAGAAATTGCCTT 58.397 39.130 0.00 0.00 35.71 4.35
203 204 5.754782 TCTAGCATCCAAGAAATTGCCTTA 58.245 37.500 0.00 0.00 35.71 2.69
204 205 6.367983 TCTAGCATCCAAGAAATTGCCTTAT 58.632 36.000 0.00 0.00 35.71 1.73
205 206 5.945144 AGCATCCAAGAAATTGCCTTATT 57.055 34.783 0.00 0.00 35.71 1.40
206 207 6.303903 AGCATCCAAGAAATTGCCTTATTT 57.696 33.333 0.00 0.00 35.71 1.40
207 208 7.422465 AGCATCCAAGAAATTGCCTTATTTA 57.578 32.000 0.00 0.00 35.71 1.40
208 209 7.850193 AGCATCCAAGAAATTGCCTTATTTAA 58.150 30.769 0.00 0.00 35.71 1.52
209 210 7.765819 AGCATCCAAGAAATTGCCTTATTTAAC 59.234 33.333 0.00 0.00 35.71 2.01
210 211 7.765819 GCATCCAAGAAATTGCCTTATTTAACT 59.234 33.333 0.00 0.00 0.00 2.24
211 212 9.305925 CATCCAAGAAATTGCCTTATTTAACTC 57.694 33.333 0.00 0.00 0.00 3.01
212 213 7.836842 TCCAAGAAATTGCCTTATTTAACTCC 58.163 34.615 0.00 0.00 0.00 3.85
213 214 7.041721 CCAAGAAATTGCCTTATTTAACTCCC 58.958 38.462 0.00 0.00 0.00 4.30
214 215 7.093333 CCAAGAAATTGCCTTATTTAACTCCCT 60.093 37.037 0.00 0.00 0.00 4.20
215 216 8.966868 CAAGAAATTGCCTTATTTAACTCCCTA 58.033 33.333 0.00 0.00 0.00 3.53
216 217 9.715119 AAGAAATTGCCTTATTTAACTCCCTAT 57.285 29.630 0.00 0.00 0.00 2.57
220 221 9.588096 AATTGCCTTATTTAACTCCCTATAAGG 57.412 33.333 13.62 13.62 46.43 2.69
224 225 8.990163 CCTTATTTAACTCCCTATAAGGCAAA 57.010 34.615 7.95 0.00 41.34 3.68
225 226 8.847196 CCTTATTTAACTCCCTATAAGGCAAAC 58.153 37.037 7.95 0.00 41.34 2.93
226 227 9.403583 CTTATTTAACTCCCTATAAGGCAAACA 57.596 33.333 0.00 0.00 32.73 2.83
227 228 9.930158 TTATTTAACTCCCTATAAGGCAAACAT 57.070 29.630 0.00 0.00 32.73 2.71
232 233 7.873699 ACTCCCTATAAGGCAAACATATAGT 57.126 36.000 0.00 0.00 32.73 2.12
233 234 7.680730 ACTCCCTATAAGGCAAACATATAGTG 58.319 38.462 0.00 0.00 32.73 2.74
234 235 6.472887 TCCCTATAAGGCAAACATATAGTGC 58.527 40.000 0.00 0.00 37.55 4.40
235 236 6.043822 TCCCTATAAGGCAAACATATAGTGCA 59.956 38.462 6.74 0.00 40.12 4.57
236 237 6.886459 CCCTATAAGGCAAACATATAGTGCAT 59.114 38.462 0.00 0.00 40.12 3.96
237 238 8.046708 CCCTATAAGGCAAACATATAGTGCATA 58.953 37.037 0.00 0.00 40.12 3.14
238 239 9.448438 CCTATAAGGCAAACATATAGTGCATAA 57.552 33.333 0.00 0.00 40.12 1.90
259 260 8.452989 CATAAATGCTTTCTTGTGTTAGAACC 57.547 34.615 0.00 0.00 34.04 3.62
260 261 6.715347 AAATGCTTTCTTGTGTTAGAACCT 57.285 33.333 0.00 0.00 34.04 3.50
261 262 6.715347 AATGCTTTCTTGTGTTAGAACCTT 57.285 33.333 0.00 0.00 34.04 3.50
262 263 5.499139 TGCTTTCTTGTGTTAGAACCTTG 57.501 39.130 0.00 0.00 34.04 3.61
263 264 5.189928 TGCTTTCTTGTGTTAGAACCTTGA 58.810 37.500 0.00 0.00 34.04 3.02
264 265 5.296780 TGCTTTCTTGTGTTAGAACCTTGAG 59.703 40.000 0.00 0.00 34.04 3.02
265 266 5.297029 GCTTTCTTGTGTTAGAACCTTGAGT 59.703 40.000 0.00 0.00 34.04 3.41
266 267 6.677781 TTTCTTGTGTTAGAACCTTGAGTG 57.322 37.500 0.00 0.00 34.04 3.51
267 268 5.607939 TCTTGTGTTAGAACCTTGAGTGA 57.392 39.130 0.00 0.00 0.00 3.41
268 269 5.357257 TCTTGTGTTAGAACCTTGAGTGAC 58.643 41.667 0.00 0.00 0.00 3.67
269 270 5.128827 TCTTGTGTTAGAACCTTGAGTGACT 59.871 40.000 0.00 0.00 0.00 3.41
270 271 6.322969 TCTTGTGTTAGAACCTTGAGTGACTA 59.677 38.462 0.00 0.00 0.00 2.59
271 272 6.665992 TGTGTTAGAACCTTGAGTGACTAT 57.334 37.500 0.00 0.00 0.00 2.12
272 273 7.062749 TGTGTTAGAACCTTGAGTGACTATT 57.937 36.000 0.00 0.00 0.00 1.73
273 274 8.185506 TGTGTTAGAACCTTGAGTGACTATTA 57.814 34.615 0.00 0.00 0.00 0.98
274 275 8.644216 TGTGTTAGAACCTTGAGTGACTATTAA 58.356 33.333 0.00 0.00 0.00 1.40
275 276 9.654663 GTGTTAGAACCTTGAGTGACTATTAAT 57.345 33.333 0.00 0.00 0.00 1.40
276 277 9.871238 TGTTAGAACCTTGAGTGACTATTAATC 57.129 33.333 0.00 0.00 0.00 1.75
279 280 7.044798 AGAACCTTGAGTGACTATTAATCTGC 58.955 38.462 0.00 0.00 0.00 4.26
280 281 5.675538 ACCTTGAGTGACTATTAATCTGCC 58.324 41.667 0.00 0.00 0.00 4.85
281 282 5.426833 ACCTTGAGTGACTATTAATCTGCCT 59.573 40.000 0.00 0.00 0.00 4.75
282 283 6.611642 ACCTTGAGTGACTATTAATCTGCCTA 59.388 38.462 0.00 0.00 0.00 3.93
283 284 7.151308 CCTTGAGTGACTATTAATCTGCCTAG 58.849 42.308 0.00 0.00 0.00 3.02
284 285 6.656632 TGAGTGACTATTAATCTGCCTAGG 57.343 41.667 3.67 3.67 0.00 3.02
285 286 5.540337 TGAGTGACTATTAATCTGCCTAGGG 59.460 44.000 11.72 0.00 0.00 3.53
286 287 5.468658 AGTGACTATTAATCTGCCTAGGGT 58.531 41.667 11.72 0.00 0.00 4.34
287 288 5.305644 AGTGACTATTAATCTGCCTAGGGTG 59.694 44.000 11.72 0.00 0.00 4.61
288 289 5.070580 GTGACTATTAATCTGCCTAGGGTGT 59.929 44.000 11.72 0.00 0.00 4.16
289 290 5.665812 TGACTATTAATCTGCCTAGGGTGTT 59.334 40.000 11.72 0.00 0.00 3.32
290 291 6.157994 TGACTATTAATCTGCCTAGGGTGTTT 59.842 38.462 11.72 0.00 0.00 2.83
291 292 6.357367 ACTATTAATCTGCCTAGGGTGTTTG 58.643 40.000 11.72 0.00 0.00 2.93
292 293 1.839424 AATCTGCCTAGGGTGTTTGC 58.161 50.000 11.72 0.00 0.00 3.68
293 294 0.034089 ATCTGCCTAGGGTGTTTGCC 60.034 55.000 11.72 0.00 0.00 4.52
294 295 2.033448 TGCCTAGGGTGTTTGCCG 59.967 61.111 11.72 0.00 0.00 5.69
295 296 3.440415 GCCTAGGGTGTTTGCCGC 61.440 66.667 11.72 0.00 0.00 6.53
296 297 3.124921 CCTAGGGTGTTTGCCGCG 61.125 66.667 0.00 0.00 0.00 6.46
297 298 3.799755 CTAGGGTGTTTGCCGCGC 61.800 66.667 0.00 0.00 36.81 6.86
301 302 4.683334 GGTGTTTGCCGCGCTGAC 62.683 66.667 5.56 0.00 0.00 3.51
302 303 3.947841 GTGTTTGCCGCGCTGACA 61.948 61.111 5.56 0.00 0.00 3.58
303 304 3.648982 TGTTTGCCGCGCTGACAG 61.649 61.111 5.56 0.00 0.00 3.51
304 305 3.345808 GTTTGCCGCGCTGACAGA 61.346 61.111 6.65 0.00 0.00 3.41
305 306 2.590291 TTTGCCGCGCTGACAGAA 60.590 55.556 6.65 0.00 0.00 3.02
306 307 2.183504 TTTGCCGCGCTGACAGAAA 61.184 52.632 6.65 0.00 0.00 2.52
307 308 1.719725 TTTGCCGCGCTGACAGAAAA 61.720 50.000 6.65 0.00 0.00 2.29
308 309 1.514678 TTGCCGCGCTGACAGAAAAT 61.515 50.000 6.65 0.00 0.00 1.82
309 310 0.672091 TGCCGCGCTGACAGAAAATA 60.672 50.000 6.65 0.00 0.00 1.40
310 311 0.657840 GCCGCGCTGACAGAAAATAT 59.342 50.000 6.65 0.00 0.00 1.28
311 312 1.595489 GCCGCGCTGACAGAAAATATG 60.595 52.381 6.65 0.00 0.00 1.78
312 313 1.003545 CCGCGCTGACAGAAAATATGG 60.004 52.381 6.65 0.00 0.00 2.74
313 314 1.595489 CGCGCTGACAGAAAATATGGC 60.595 52.381 6.65 0.00 0.00 4.40
314 315 1.401552 GCGCTGACAGAAAATATGGCA 59.598 47.619 6.65 0.00 33.68 4.92
315 316 2.159393 GCGCTGACAGAAAATATGGCAA 60.159 45.455 6.65 0.00 34.61 4.52
316 317 3.429085 CGCTGACAGAAAATATGGCAAC 58.571 45.455 6.65 0.00 34.61 4.17
317 318 3.429085 GCTGACAGAAAATATGGCAACG 58.571 45.455 6.65 0.00 34.61 4.10
318 319 3.119849 GCTGACAGAAAATATGGCAACGT 60.120 43.478 6.65 0.00 34.61 3.99
319 320 4.406069 CTGACAGAAAATATGGCAACGTG 58.594 43.478 0.00 0.00 34.61 4.49
320 321 3.818210 TGACAGAAAATATGGCAACGTGT 59.182 39.130 0.00 0.00 42.51 4.49
321 322 4.158384 GACAGAAAATATGGCAACGTGTG 58.842 43.478 0.00 0.00 42.51 3.82
322 323 3.818210 ACAGAAAATATGGCAACGTGTGA 59.182 39.130 0.00 0.00 42.51 3.58
323 324 4.158384 CAGAAAATATGGCAACGTGTGAC 58.842 43.478 0.00 0.00 42.51 3.67
324 325 3.190535 AGAAAATATGGCAACGTGTGACC 59.809 43.478 0.00 0.00 42.51 4.02
325 326 2.489938 AATATGGCAACGTGTGACCT 57.510 45.000 0.00 0.00 42.51 3.85
326 327 2.489938 ATATGGCAACGTGTGACCTT 57.510 45.000 0.00 0.00 42.51 3.50
327 328 1.803334 TATGGCAACGTGTGACCTTC 58.197 50.000 0.00 0.00 42.51 3.46
328 329 0.108585 ATGGCAACGTGTGACCTTCT 59.891 50.000 0.00 0.00 42.51 2.85
329 330 0.813610 TGGCAACGTGTGACCTTCTG 60.814 55.000 0.00 0.00 42.51 3.02
330 331 0.814010 GGCAACGTGTGACCTTCTGT 60.814 55.000 0.00 0.00 0.00 3.41
331 332 1.014352 GCAACGTGTGACCTTCTGTT 58.986 50.000 0.00 0.00 0.00 3.16
332 333 2.206750 GCAACGTGTGACCTTCTGTTA 58.793 47.619 0.00 0.00 0.00 2.41
333 334 2.221055 GCAACGTGTGACCTTCTGTTAG 59.779 50.000 0.00 0.00 0.00 2.34
334 335 3.454375 CAACGTGTGACCTTCTGTTAGT 58.546 45.455 0.00 0.00 0.00 2.24
335 336 3.093717 ACGTGTGACCTTCTGTTAGTG 57.906 47.619 0.00 0.00 0.00 2.74
336 337 2.691526 ACGTGTGACCTTCTGTTAGTGA 59.308 45.455 0.00 0.00 0.00 3.41
337 338 3.050619 CGTGTGACCTTCTGTTAGTGAC 58.949 50.000 0.00 0.00 0.00 3.67
338 339 3.391049 GTGTGACCTTCTGTTAGTGACC 58.609 50.000 0.00 0.00 0.00 4.02
339 340 3.035363 TGTGACCTTCTGTTAGTGACCA 58.965 45.455 0.00 0.00 0.00 4.02
340 341 3.646162 TGTGACCTTCTGTTAGTGACCAT 59.354 43.478 0.00 0.00 0.00 3.55
341 342 3.997021 GTGACCTTCTGTTAGTGACCATG 59.003 47.826 0.00 0.00 0.00 3.66
342 343 3.003480 GACCTTCTGTTAGTGACCATGC 58.997 50.000 0.00 0.00 0.00 4.06
343 344 2.371841 ACCTTCTGTTAGTGACCATGCA 59.628 45.455 0.00 0.00 0.00 3.96
344 345 3.009473 ACCTTCTGTTAGTGACCATGCAT 59.991 43.478 0.00 0.00 0.00 3.96
345 346 3.376234 CCTTCTGTTAGTGACCATGCATG 59.624 47.826 20.19 20.19 0.00 4.06
346 347 2.358957 TCTGTTAGTGACCATGCATGC 58.641 47.619 21.69 11.82 0.00 4.06
347 348 2.086094 CTGTTAGTGACCATGCATGCA 58.914 47.619 25.04 25.04 0.00 3.96
348 349 2.686405 CTGTTAGTGACCATGCATGCAT 59.314 45.455 27.46 27.46 37.08 3.96
349 350 3.090790 TGTTAGTGACCATGCATGCATT 58.909 40.909 30.32 17.61 33.90 3.56
350 351 3.129113 TGTTAGTGACCATGCATGCATTC 59.871 43.478 30.32 24.85 33.90 2.67
351 352 2.139323 AGTGACCATGCATGCATTCT 57.861 45.000 30.32 17.77 33.90 2.40
352 353 2.453521 AGTGACCATGCATGCATTCTT 58.546 42.857 30.32 16.96 33.90 2.52
353 354 2.165641 AGTGACCATGCATGCATTCTTG 59.834 45.455 30.32 20.15 33.90 3.02
354 355 2.164827 GTGACCATGCATGCATTCTTGA 59.835 45.455 30.32 9.10 33.90 3.02
355 356 2.826725 TGACCATGCATGCATTCTTGAA 59.173 40.909 30.32 11.42 33.90 2.69
356 357 3.449377 TGACCATGCATGCATTCTTGAAT 59.551 39.130 30.32 12.22 33.90 2.57
357 358 4.645588 TGACCATGCATGCATTCTTGAATA 59.354 37.500 30.32 7.04 33.90 1.75
358 359 5.303333 TGACCATGCATGCATTCTTGAATAT 59.697 36.000 30.32 3.61 33.90 1.28
359 360 5.538118 ACCATGCATGCATTCTTGAATATG 58.462 37.500 30.32 16.12 33.90 1.78
360 361 5.069914 ACCATGCATGCATTCTTGAATATGT 59.930 36.000 30.32 10.66 33.90 2.29
361 362 6.265876 ACCATGCATGCATTCTTGAATATGTA 59.734 34.615 30.32 0.00 33.90 2.29
362 363 7.039293 ACCATGCATGCATTCTTGAATATGTAT 60.039 33.333 30.32 1.56 33.90 2.29
363 364 7.275560 CCATGCATGCATTCTTGAATATGTATG 59.724 37.037 30.32 14.33 43.42 2.39
364 365 7.279750 TGCATGCATTCTTGAATATGTATGT 57.720 32.000 18.46 0.00 42.89 2.29
365 366 7.718525 TGCATGCATTCTTGAATATGTATGTT 58.281 30.769 18.46 0.00 42.89 2.71
366 367 7.650104 TGCATGCATTCTTGAATATGTATGTTG 59.350 33.333 18.46 0.00 42.89 3.33
367 368 7.650504 GCATGCATTCTTGAATATGTATGTTGT 59.349 33.333 14.21 0.00 42.89 3.32
368 369 9.177304 CATGCATTCTTGAATATGTATGTTGTC 57.823 33.333 0.00 0.00 38.93 3.18
369 370 8.278729 TGCATTCTTGAATATGTATGTTGTCA 57.721 30.769 0.00 0.00 0.00 3.58
397 398 9.249053 TCAGTTGGCCTTGTATTTATATTTTCA 57.751 29.630 3.32 0.00 0.00 2.69
490 491 1.279271 GGCCTGTCCTATGTTGTGTCT 59.721 52.381 0.00 0.00 0.00 3.41
681 687 5.306114 TCAATACCGATCTAGAGGACTGA 57.694 43.478 5.07 2.37 0.00 3.41
688 694 6.489603 ACCGATCTAGAGGACTGATCAATAT 58.510 40.000 5.07 0.00 37.14 1.28
690 696 6.376864 CCGATCTAGAGGACTGATCAATATGT 59.623 42.308 0.00 0.00 37.14 2.29
809 815 8.967664 AAAATGGTAATGCATTTTGCTCATAT 57.032 26.923 18.75 5.31 45.31 1.78
810 816 8.967664 AAATGGTAATGCATTTTGCTCATATT 57.032 26.923 18.75 5.16 45.31 1.28
811 817 8.967664 AATGGTAATGCATTTTGCTCATATTT 57.032 26.923 18.75 0.00 45.31 1.40
838 844 9.623350 ATTAACAAAAATGGTAATGCATTTTGC 57.377 25.926 18.75 8.38 45.29 3.68
839 845 6.880942 ACAAAAATGGTAATGCATTTTGCT 57.119 29.167 18.75 0.00 45.31 3.91
840 846 6.901265 ACAAAAATGGTAATGCATTTTGCTC 58.099 32.000 18.75 4.01 45.31 4.26
841 847 6.485984 ACAAAAATGGTAATGCATTTTGCTCA 59.514 30.769 18.75 9.37 45.31 4.26
842 848 7.175293 ACAAAAATGGTAATGCATTTTGCTCAT 59.825 29.630 18.75 11.11 45.31 2.90
843 849 8.666573 CAAAAATGGTAATGCATTTTGCTCATA 58.333 29.630 18.75 0.00 45.31 2.15
844 850 7.775397 AAATGGTAATGCATTTTGCTCATAC 57.225 32.000 18.75 6.70 45.31 2.39
845 851 5.261209 TGGTAATGCATTTTGCTCATACC 57.739 39.130 18.75 16.02 45.31 2.73
846 852 4.708909 TGGTAATGCATTTTGCTCATACCA 59.291 37.500 18.75 18.41 45.13 3.25
847 853 5.163530 TGGTAATGCATTTTGCTCATACCAG 60.164 40.000 18.75 0.00 43.91 4.00
848 854 4.395959 AATGCATTTTGCTCATACCAGG 57.604 40.909 5.99 0.00 45.31 4.45
849 855 2.101783 TGCATTTTGCTCATACCAGGG 58.898 47.619 0.75 0.00 45.31 4.45
850 856 2.102578 GCATTTTGCTCATACCAGGGT 58.897 47.619 0.00 0.00 40.96 4.34
851 857 2.159198 GCATTTTGCTCATACCAGGGTG 60.159 50.000 0.06 0.00 40.96 4.61
852 858 2.969821 TTTTGCTCATACCAGGGTGT 57.030 45.000 0.06 0.00 0.00 4.16
855 861 1.357137 TGCTCATACCAGGGTGTTCA 58.643 50.000 0.06 0.00 0.00 3.18
874 935 7.865385 GGTGTTCAATTTAGTCTGTTGCAAATA 59.135 33.333 0.00 0.00 0.00 1.40
921 986 1.621377 GACCTGCCCCCTCTCTCTA 59.379 63.158 0.00 0.00 0.00 2.43
1047 1112 1.695893 CCACATGGATCACGACGTGC 61.696 60.000 22.99 9.96 37.39 5.34
1049 1114 0.037326 ACATGGATCACGACGTGCTT 60.037 50.000 22.99 12.66 32.98 3.91
1129 1194 0.618458 GCTGGACATGGTTCACCCTA 59.382 55.000 0.00 0.00 34.29 3.53
1194 1259 0.035317 ATCTGTTCTGGAGCGTTGCA 59.965 50.000 0.00 0.00 0.00 4.08
1230 1295 0.033920 TAGATGGCTGCGATGCGATT 59.966 50.000 0.66 0.00 31.72 3.34
1270 1335 2.159198 GCAGGTGAATTTCGATGCCAAT 60.159 45.455 8.36 0.00 0.00 3.16
1294 1359 4.386867 GGAGTACGACATGATCCAGAAA 57.613 45.455 0.00 0.00 0.00 2.52
1329 1394 1.664016 GGATGTGTTCAACAAGCTGCG 60.664 52.381 0.00 0.00 43.61 5.18
1375 1440 5.375283 TTCTCCTAGCTTAGCTCTCTACA 57.625 43.478 11.09 0.00 40.44 2.74
1433 1498 4.018506 TCATCTGGGAAAGCAAAGGTGATA 60.019 41.667 0.00 0.00 0.00 2.15
1466 1531 6.204108 ACAGTAGTTTGGTTTATATATGCGGC 59.796 38.462 0.00 0.00 0.00 6.53
1542 1607 4.156455 AGCCACAAGGTGATTCGATAAT 57.844 40.909 0.00 0.00 35.23 1.28
1543 1608 3.879295 AGCCACAAGGTGATTCGATAATG 59.121 43.478 0.00 0.00 35.23 1.90
1592 1657 6.851222 AGTTATGCTCATTGCTGTGTATAC 57.149 37.500 0.00 0.00 43.37 1.47
1607 1672 9.017509 TGCTGTGTATACTACTAAACTTGTACT 57.982 33.333 4.17 0.00 0.00 2.73
1624 1689 8.928270 ACTTGTACTATTCTTGTCCTATTTCG 57.072 34.615 0.00 0.00 0.00 3.46
1646 1711 8.827177 TTCGACACAACATTAAGATTAGAGTT 57.173 30.769 0.00 0.00 0.00 3.01
1787 1852 2.089980 CTCCCTGCTCTGATTGGTTTG 58.910 52.381 0.00 0.00 0.00 2.93
1854 1919 6.169800 TGTTTTAATCCTGATGATGACGTGA 58.830 36.000 0.00 0.00 32.68 4.35
1885 1950 7.881775 AAAGTGGACACCATATTCCTATTTC 57.118 36.000 0.00 0.00 35.28 2.17
1897 1962 8.472413 CCATATTCCTATTTCAATGCATAAGGG 58.528 37.037 0.00 0.00 0.00 3.95
1902 1967 8.635765 TCCTATTTCAATGCATAAGGGATAAC 57.364 34.615 0.00 0.00 0.00 1.89
1943 2008 6.307776 TGGTTTACCCATGTCAGATTTGTTA 58.692 36.000 0.00 0.00 38.72 2.41
1983 2048 9.832445 TGGTCCTTCATATCTAAAGTTTACATC 57.168 33.333 0.00 0.00 0.00 3.06
2018 2083 6.042093 AGCTCTACTTTATGCTAATACCTGCA 59.958 38.462 0.00 0.00 43.67 4.41
2059 2124 9.396022 CATGGTATACTTCTAAATGGACAAGTT 57.604 33.333 2.25 0.00 31.52 2.66
2188 2255 0.179009 GCCTGATGCTTGATGGCCTA 60.179 55.000 3.32 0.00 37.81 3.93
2265 2334 9.499585 CTTTGACATAGTTGCTTATTGATTGAG 57.500 33.333 0.00 0.00 0.00 3.02
2267 2336 7.977904 TGACATAGTTGCTTATTGATTGAGTG 58.022 34.615 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.046529 GCATCAAGTAGACCTGATGTACAG 58.953 45.833 18.12 0.00 45.36 2.74
11 12 4.466015 TGCATCAAGTAGACCTGATGTACA 59.534 41.667 18.12 0.00 39.99 2.90
12 13 5.011090 TGCATCAAGTAGACCTGATGTAC 57.989 43.478 18.12 7.25 39.99 2.90
13 14 5.664457 CTTGCATCAAGTAGACCTGATGTA 58.336 41.667 18.12 13.21 39.99 2.29
14 15 4.511527 CTTGCATCAAGTAGACCTGATGT 58.488 43.478 18.12 0.00 39.99 3.06
44 45 5.596361 TGAAATAGAAGGTCACAGGCAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
45 46 5.136828 TGAAATAGAAGGTCACAGGCAAAA 58.863 37.500 0.00 0.00 0.00 2.44
46 47 4.724399 TGAAATAGAAGGTCACAGGCAAA 58.276 39.130 0.00 0.00 0.00 3.68
47 48 4.365514 TGAAATAGAAGGTCACAGGCAA 57.634 40.909 0.00 0.00 0.00 4.52
48 49 4.574674 ATGAAATAGAAGGTCACAGGCA 57.425 40.909 0.00 0.00 0.00 4.75
49 50 4.439289 GCAATGAAATAGAAGGTCACAGGC 60.439 45.833 0.00 0.00 0.00 4.85
50 51 4.701651 TGCAATGAAATAGAAGGTCACAGG 59.298 41.667 0.00 0.00 0.00 4.00
51 52 5.885230 TGCAATGAAATAGAAGGTCACAG 57.115 39.130 0.00 0.00 0.00 3.66
52 53 6.403527 CGATTGCAATGAAATAGAAGGTCACA 60.404 38.462 18.59 0.00 0.00 3.58
53 54 5.967674 CGATTGCAATGAAATAGAAGGTCAC 59.032 40.000 18.59 0.00 0.00 3.67
54 55 5.879777 TCGATTGCAATGAAATAGAAGGTCA 59.120 36.000 18.59 0.00 0.00 4.02
55 56 6.363577 TCGATTGCAATGAAATAGAAGGTC 57.636 37.500 18.59 0.00 0.00 3.85
56 57 5.220931 GCTCGATTGCAATGAAATAGAAGGT 60.221 40.000 18.59 0.00 0.00 3.50
57 58 5.008415 AGCTCGATTGCAATGAAATAGAAGG 59.992 40.000 18.59 2.20 34.99 3.46
58 59 6.057627 AGCTCGATTGCAATGAAATAGAAG 57.942 37.500 18.59 3.54 34.99 2.85
59 60 6.986231 TCTAGCTCGATTGCAATGAAATAGAA 59.014 34.615 18.59 7.11 34.99 2.10
60 61 6.422100 GTCTAGCTCGATTGCAATGAAATAGA 59.578 38.462 18.59 17.72 34.99 1.98
61 62 6.201615 TGTCTAGCTCGATTGCAATGAAATAG 59.798 38.462 18.59 16.15 34.99 1.73
62 63 6.048509 TGTCTAGCTCGATTGCAATGAAATA 58.951 36.000 18.59 8.89 34.99 1.40
63 64 4.877823 TGTCTAGCTCGATTGCAATGAAAT 59.122 37.500 18.59 8.28 34.99 2.17
64 65 4.252878 TGTCTAGCTCGATTGCAATGAAA 58.747 39.130 18.59 0.00 34.99 2.69
65 66 3.860641 TGTCTAGCTCGATTGCAATGAA 58.139 40.909 18.59 3.30 34.99 2.57
66 67 3.525268 TGTCTAGCTCGATTGCAATGA 57.475 42.857 18.59 13.22 34.99 2.57
67 68 3.059120 CCATGTCTAGCTCGATTGCAATG 60.059 47.826 18.59 9.47 34.99 2.82
68 69 3.136763 CCATGTCTAGCTCGATTGCAAT 58.863 45.455 12.83 12.83 34.99 3.56
69 70 2.168313 TCCATGTCTAGCTCGATTGCAA 59.832 45.455 0.00 0.00 34.99 4.08
70 71 1.756538 TCCATGTCTAGCTCGATTGCA 59.243 47.619 0.00 0.00 34.99 4.08
71 72 2.515926 TCCATGTCTAGCTCGATTGC 57.484 50.000 0.00 0.00 0.00 3.56
72 73 3.244009 ACCATCCATGTCTAGCTCGATTG 60.244 47.826 0.00 0.00 0.00 2.67
73 74 2.968574 ACCATCCATGTCTAGCTCGATT 59.031 45.455 0.00 0.00 0.00 3.34
74 75 2.603021 ACCATCCATGTCTAGCTCGAT 58.397 47.619 0.00 0.00 0.00 3.59
75 76 2.073252 ACCATCCATGTCTAGCTCGA 57.927 50.000 0.00 0.00 0.00 4.04
76 77 2.159043 ACAACCATCCATGTCTAGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
77 78 3.550437 ACAACCATCCATGTCTAGCTC 57.450 47.619 0.00 0.00 0.00 4.09
78 79 3.521126 AGAACAACCATCCATGTCTAGCT 59.479 43.478 0.00 0.00 0.00 3.32
79 80 3.873952 GAGAACAACCATCCATGTCTAGC 59.126 47.826 0.00 0.00 0.00 3.42
80 81 5.089970 TGAGAACAACCATCCATGTCTAG 57.910 43.478 0.00 0.00 0.00 2.43
81 82 4.532126 ACTGAGAACAACCATCCATGTCTA 59.468 41.667 0.00 0.00 0.00 2.59
82 83 3.328931 ACTGAGAACAACCATCCATGTCT 59.671 43.478 0.00 0.00 0.00 3.41
83 84 3.679389 ACTGAGAACAACCATCCATGTC 58.321 45.455 0.00 0.00 0.00 3.06
84 85 3.560025 GGACTGAGAACAACCATCCATGT 60.560 47.826 0.00 0.00 0.00 3.21
85 86 3.012518 GGACTGAGAACAACCATCCATG 58.987 50.000 0.00 0.00 0.00 3.66
86 87 2.644299 TGGACTGAGAACAACCATCCAT 59.356 45.455 0.00 0.00 31.48 3.41
87 88 2.038952 CTGGACTGAGAACAACCATCCA 59.961 50.000 0.00 0.00 34.22 3.41
88 89 2.704572 CTGGACTGAGAACAACCATCC 58.295 52.381 0.00 0.00 34.22 3.51
89 90 2.079925 GCTGGACTGAGAACAACCATC 58.920 52.381 0.00 0.00 34.22 3.51
90 91 1.701847 AGCTGGACTGAGAACAACCAT 59.298 47.619 0.00 0.00 34.22 3.55
91 92 1.131638 AGCTGGACTGAGAACAACCA 58.868 50.000 0.00 0.00 33.84 3.67
92 93 3.006967 TCTTAGCTGGACTGAGAACAACC 59.993 47.826 0.00 0.00 38.03 3.77
93 94 4.021894 TCTCTTAGCTGGACTGAGAACAAC 60.022 45.833 0.00 0.00 40.26 3.32
94 95 4.152647 TCTCTTAGCTGGACTGAGAACAA 58.847 43.478 0.00 0.00 40.26 2.83
95 96 3.767711 TCTCTTAGCTGGACTGAGAACA 58.232 45.455 0.00 0.00 40.26 3.18
96 97 5.337578 AATCTCTTAGCTGGACTGAGAAC 57.662 43.478 0.00 0.00 40.26 3.01
97 98 6.437477 TGTAAATCTCTTAGCTGGACTGAGAA 59.563 38.462 0.00 0.00 40.26 2.87
98 99 5.952347 TGTAAATCTCTTAGCTGGACTGAGA 59.048 40.000 0.00 2.54 38.62 3.27
99 100 6.214191 TGTAAATCTCTTAGCTGGACTGAG 57.786 41.667 0.00 0.00 33.29 3.35
100 101 6.014584 TGTTGTAAATCTCTTAGCTGGACTGA 60.015 38.462 0.00 0.00 0.00 3.41
101 102 6.091441 GTGTTGTAAATCTCTTAGCTGGACTG 59.909 42.308 0.00 0.00 0.00 3.51
102 103 6.166982 GTGTTGTAAATCTCTTAGCTGGACT 58.833 40.000 0.00 0.00 0.00 3.85
103 104 5.932303 TGTGTTGTAAATCTCTTAGCTGGAC 59.068 40.000 0.00 0.00 0.00 4.02
104 105 5.932303 GTGTGTTGTAAATCTCTTAGCTGGA 59.068 40.000 0.00 0.00 0.00 3.86
105 106 5.700832 TGTGTGTTGTAAATCTCTTAGCTGG 59.299 40.000 0.00 0.00 0.00 4.85
106 107 6.785488 TGTGTGTTGTAAATCTCTTAGCTG 57.215 37.500 0.00 0.00 0.00 4.24
107 108 6.992715 AGTTGTGTGTTGTAAATCTCTTAGCT 59.007 34.615 0.00 0.00 0.00 3.32
108 109 7.042051 TGAGTTGTGTGTTGTAAATCTCTTAGC 60.042 37.037 0.00 0.00 0.00 3.09
109 110 8.365399 TGAGTTGTGTGTTGTAAATCTCTTAG 57.635 34.615 0.00 0.00 0.00 2.18
110 111 8.609176 GTTGAGTTGTGTGTTGTAAATCTCTTA 58.391 33.333 0.00 0.00 0.00 2.10
111 112 7.120579 TGTTGAGTTGTGTGTTGTAAATCTCTT 59.879 33.333 0.00 0.00 0.00 2.85
112 113 6.597672 TGTTGAGTTGTGTGTTGTAAATCTCT 59.402 34.615 0.00 0.00 0.00 3.10
113 114 6.687105 GTGTTGAGTTGTGTGTTGTAAATCTC 59.313 38.462 0.00 0.00 0.00 2.75
114 115 6.150307 TGTGTTGAGTTGTGTGTTGTAAATCT 59.850 34.615 0.00 0.00 0.00 2.40
115 116 6.318628 TGTGTTGAGTTGTGTGTTGTAAATC 58.681 36.000 0.00 0.00 0.00 2.17
116 117 6.260870 TGTGTTGAGTTGTGTGTTGTAAAT 57.739 33.333 0.00 0.00 0.00 1.40
117 118 5.690997 TGTGTTGAGTTGTGTGTTGTAAA 57.309 34.783 0.00 0.00 0.00 2.01
118 119 5.645929 AGATGTGTTGAGTTGTGTGTTGTAA 59.354 36.000 0.00 0.00 0.00 2.41
119 120 5.182487 AGATGTGTTGAGTTGTGTGTTGTA 58.818 37.500 0.00 0.00 0.00 2.41
120 121 4.009675 AGATGTGTTGAGTTGTGTGTTGT 58.990 39.130 0.00 0.00 0.00 3.32
121 122 4.621068 AGATGTGTTGAGTTGTGTGTTG 57.379 40.909 0.00 0.00 0.00 3.33
122 123 4.273480 GCTAGATGTGTTGAGTTGTGTGTT 59.727 41.667 0.00 0.00 0.00 3.32
123 124 3.809832 GCTAGATGTGTTGAGTTGTGTGT 59.190 43.478 0.00 0.00 0.00 3.72
124 125 3.809279 TGCTAGATGTGTTGAGTTGTGTG 59.191 43.478 0.00 0.00 0.00 3.82
125 126 4.060900 CTGCTAGATGTGTTGAGTTGTGT 58.939 43.478 0.00 0.00 0.00 3.72
126 127 3.120408 GCTGCTAGATGTGTTGAGTTGTG 60.120 47.826 0.00 0.00 0.00 3.33
127 128 3.070018 GCTGCTAGATGTGTTGAGTTGT 58.930 45.455 0.00 0.00 0.00 3.32
128 129 2.417933 GGCTGCTAGATGTGTTGAGTTG 59.582 50.000 0.00 0.00 0.00 3.16
129 130 2.304180 AGGCTGCTAGATGTGTTGAGTT 59.696 45.455 0.00 0.00 0.00 3.01
130 131 1.905215 AGGCTGCTAGATGTGTTGAGT 59.095 47.619 0.00 0.00 0.00 3.41
131 132 2.687700 AGGCTGCTAGATGTGTTGAG 57.312 50.000 0.00 0.00 0.00 3.02
132 133 2.159043 GCTAGGCTGCTAGATGTGTTGA 60.159 50.000 0.00 0.00 0.00 3.18
133 134 2.208431 GCTAGGCTGCTAGATGTGTTG 58.792 52.381 0.00 0.00 0.00 3.33
134 135 1.833630 TGCTAGGCTGCTAGATGTGTT 59.166 47.619 0.00 0.00 0.00 3.32
135 136 1.411977 CTGCTAGGCTGCTAGATGTGT 59.588 52.381 0.00 0.00 0.00 3.72
136 137 1.411977 ACTGCTAGGCTGCTAGATGTG 59.588 52.381 0.00 0.00 0.00 3.21
137 138 1.786937 ACTGCTAGGCTGCTAGATGT 58.213 50.000 0.00 0.40 0.00 3.06
138 139 2.890311 AGTACTGCTAGGCTGCTAGATG 59.110 50.000 0.00 0.00 0.00 2.90
139 140 3.237268 AGTACTGCTAGGCTGCTAGAT 57.763 47.619 0.00 0.00 0.00 1.98
140 141 2.738587 AGTACTGCTAGGCTGCTAGA 57.261 50.000 0.00 0.00 0.00 2.43
141 142 2.227865 GCTAGTACTGCTAGGCTGCTAG 59.772 54.545 5.39 0.84 45.61 3.42
142 143 2.231529 GCTAGTACTGCTAGGCTGCTA 58.768 52.381 5.39 0.00 45.61 3.49
143 144 1.036707 GCTAGTACTGCTAGGCTGCT 58.963 55.000 5.39 0.00 45.61 4.24
144 145 0.747255 TGCTAGTACTGCTAGGCTGC 59.253 55.000 5.39 0.00 45.61 5.25
145 146 2.166459 TGTTGCTAGTACTGCTAGGCTG 59.834 50.000 5.39 0.00 45.61 4.85
146 147 2.457598 TGTTGCTAGTACTGCTAGGCT 58.542 47.619 5.39 0.00 45.61 4.58
147 148 2.930682 GTTGTTGCTAGTACTGCTAGGC 59.069 50.000 5.39 2.97 45.61 3.93
148 149 4.188247 TGTTGTTGCTAGTACTGCTAGG 57.812 45.455 5.39 0.00 45.61 3.02
150 151 6.928979 TTTTTGTTGTTGCTAGTACTGCTA 57.071 33.333 5.39 1.63 0.00 3.49
151 152 5.828299 TTTTTGTTGTTGCTAGTACTGCT 57.172 34.783 5.39 0.00 0.00 4.24
171 172 6.899393 TTCTTGGATGCTAGATGTGTTTTT 57.101 33.333 0.00 0.00 0.00 1.94
172 173 6.899393 TTTCTTGGATGCTAGATGTGTTTT 57.101 33.333 0.00 0.00 0.00 2.43
173 174 7.318141 CAATTTCTTGGATGCTAGATGTGTTT 58.682 34.615 0.00 0.00 0.00 2.83
174 175 6.626623 GCAATTTCTTGGATGCTAGATGTGTT 60.627 38.462 0.00 0.00 35.93 3.32
175 176 5.163581 GCAATTTCTTGGATGCTAGATGTGT 60.164 40.000 0.00 0.00 35.93 3.72
176 177 5.279384 GCAATTTCTTGGATGCTAGATGTG 58.721 41.667 0.00 0.36 35.93 3.21
177 178 4.340381 GGCAATTTCTTGGATGCTAGATGT 59.660 41.667 0.00 0.00 38.79 3.06
178 179 4.583489 AGGCAATTTCTTGGATGCTAGATG 59.417 41.667 0.00 0.00 38.79 2.90
179 180 4.801164 AGGCAATTTCTTGGATGCTAGAT 58.199 39.130 0.00 0.00 38.79 1.98
180 181 4.240881 AGGCAATTTCTTGGATGCTAGA 57.759 40.909 0.00 0.00 38.79 2.43
181 182 4.996788 AAGGCAATTTCTTGGATGCTAG 57.003 40.909 0.00 0.00 38.79 3.42
182 183 7.422465 AAATAAGGCAATTTCTTGGATGCTA 57.578 32.000 0.00 0.00 38.79 3.49
183 184 5.945144 AATAAGGCAATTTCTTGGATGCT 57.055 34.783 0.00 0.00 38.79 3.79
184 185 7.765819 AGTTAAATAAGGCAATTTCTTGGATGC 59.234 33.333 1.65 0.00 38.06 3.91
185 186 9.305925 GAGTTAAATAAGGCAATTTCTTGGATG 57.694 33.333 1.65 0.00 32.72 3.51
186 187 8.478066 GGAGTTAAATAAGGCAATTTCTTGGAT 58.522 33.333 1.65 0.00 32.72 3.41
187 188 7.093509 GGGAGTTAAATAAGGCAATTTCTTGGA 60.094 37.037 1.65 0.00 32.72 3.53
188 189 7.041721 GGGAGTTAAATAAGGCAATTTCTTGG 58.958 38.462 1.65 0.00 32.72 3.61
189 190 7.840931 AGGGAGTTAAATAAGGCAATTTCTTG 58.159 34.615 1.65 0.00 35.36 3.02
190 191 9.715119 ATAGGGAGTTAAATAAGGCAATTTCTT 57.285 29.630 1.65 0.00 31.63 2.52
194 195 9.588096 CCTTATAGGGAGTTAAATAAGGCAATT 57.412 33.333 7.95 0.00 42.25 2.32
200 201 9.403583 TGTTTGCCTTATAGGGAGTTAAATAAG 57.596 33.333 4.79 0.00 36.92 1.73
201 202 9.930158 ATGTTTGCCTTATAGGGAGTTAAATAA 57.070 29.630 4.79 0.00 36.92 1.40
206 207 9.388672 ACTATATGTTTGCCTTATAGGGAGTTA 57.611 33.333 4.79 0.00 36.92 2.24
207 208 8.157476 CACTATATGTTTGCCTTATAGGGAGTT 58.843 37.037 4.79 0.00 38.54 3.01
208 209 7.680730 CACTATATGTTTGCCTTATAGGGAGT 58.319 38.462 4.79 0.00 38.54 3.85
209 210 6.595716 GCACTATATGTTTGCCTTATAGGGAG 59.404 42.308 4.79 0.00 38.54 4.30
210 211 6.043822 TGCACTATATGTTTGCCTTATAGGGA 59.956 38.462 4.79 0.00 38.54 4.20
211 212 6.237901 TGCACTATATGTTTGCCTTATAGGG 58.762 40.000 0.00 0.00 38.95 3.53
212 213 7.928307 ATGCACTATATGTTTGCCTTATAGG 57.072 36.000 0.00 0.00 37.77 2.57
231 232 7.594758 TTCTAACACAAGAAAGCATTTATGCAC 59.405 33.333 16.33 7.70 42.00 4.57
232 233 7.594758 GTTCTAACACAAGAAAGCATTTATGCA 59.405 33.333 16.33 0.00 43.64 3.96
233 234 7.062255 GGTTCTAACACAAGAAAGCATTTATGC 59.938 37.037 6.60 6.60 39.27 3.14
234 235 8.299570 AGGTTCTAACACAAGAAAGCATTTATG 58.700 33.333 0.00 0.00 39.27 1.90
235 236 8.409358 AGGTTCTAACACAAGAAAGCATTTAT 57.591 30.769 0.00 0.00 39.27 1.40
236 237 7.817418 AGGTTCTAACACAAGAAAGCATTTA 57.183 32.000 0.00 0.00 39.27 1.40
237 238 6.715347 AGGTTCTAACACAAGAAAGCATTT 57.285 33.333 0.00 0.00 43.98 2.32
238 239 6.321181 TCAAGGTTCTAACACAAGAAAGCATT 59.679 34.615 0.00 0.00 37.24 3.56
239 240 5.827797 TCAAGGTTCTAACACAAGAAAGCAT 59.172 36.000 0.00 0.00 37.24 3.79
240 241 5.189928 TCAAGGTTCTAACACAAGAAAGCA 58.810 37.500 0.00 0.00 37.24 3.91
241 242 5.297029 ACTCAAGGTTCTAACACAAGAAAGC 59.703 40.000 0.00 0.00 37.24 3.51
242 243 6.538742 TCACTCAAGGTTCTAACACAAGAAAG 59.461 38.462 0.00 0.00 37.24 2.62
243 244 6.315393 GTCACTCAAGGTTCTAACACAAGAAA 59.685 38.462 0.00 0.00 37.24 2.52
244 245 5.815740 GTCACTCAAGGTTCTAACACAAGAA 59.184 40.000 0.00 0.00 33.10 2.52
245 246 5.128827 AGTCACTCAAGGTTCTAACACAAGA 59.871 40.000 0.00 0.00 0.00 3.02
246 247 5.360591 AGTCACTCAAGGTTCTAACACAAG 58.639 41.667 0.00 0.00 0.00 3.16
247 248 5.353394 AGTCACTCAAGGTTCTAACACAA 57.647 39.130 0.00 0.00 0.00 3.33
248 249 6.665992 ATAGTCACTCAAGGTTCTAACACA 57.334 37.500 0.00 0.00 0.00 3.72
249 250 9.654663 ATTAATAGTCACTCAAGGTTCTAACAC 57.345 33.333 0.00 0.00 0.00 3.32
250 251 9.871238 GATTAATAGTCACTCAAGGTTCTAACA 57.129 33.333 0.00 0.00 0.00 2.41
253 254 8.198109 GCAGATTAATAGTCACTCAAGGTTCTA 58.802 37.037 0.00 0.00 0.00 2.10
254 255 7.044798 GCAGATTAATAGTCACTCAAGGTTCT 58.955 38.462 0.00 0.00 0.00 3.01
255 256 6.258947 GGCAGATTAATAGTCACTCAAGGTTC 59.741 42.308 0.00 0.00 0.00 3.62
256 257 6.069963 AGGCAGATTAATAGTCACTCAAGGTT 60.070 38.462 0.00 0.00 0.00 3.50
257 258 5.426833 AGGCAGATTAATAGTCACTCAAGGT 59.573 40.000 0.00 0.00 0.00 3.50
258 259 5.923204 AGGCAGATTAATAGTCACTCAAGG 58.077 41.667 0.00 0.00 0.00 3.61
259 260 7.151308 CCTAGGCAGATTAATAGTCACTCAAG 58.849 42.308 0.00 0.00 0.00 3.02
260 261 6.042093 CCCTAGGCAGATTAATAGTCACTCAA 59.958 42.308 2.05 0.00 0.00 3.02
261 262 5.540337 CCCTAGGCAGATTAATAGTCACTCA 59.460 44.000 2.05 0.00 0.00 3.41
262 263 5.540719 ACCCTAGGCAGATTAATAGTCACTC 59.459 44.000 2.05 0.00 0.00 3.51
263 264 5.305644 CACCCTAGGCAGATTAATAGTCACT 59.694 44.000 2.05 0.00 0.00 3.41
264 265 5.070580 ACACCCTAGGCAGATTAATAGTCAC 59.929 44.000 2.05 0.00 0.00 3.67
265 266 5.216622 ACACCCTAGGCAGATTAATAGTCA 58.783 41.667 2.05 0.00 0.00 3.41
266 267 5.810080 ACACCCTAGGCAGATTAATAGTC 57.190 43.478 2.05 0.00 0.00 2.59
267 268 6.357367 CAAACACCCTAGGCAGATTAATAGT 58.643 40.000 2.05 0.00 0.00 2.12
268 269 5.239525 GCAAACACCCTAGGCAGATTAATAG 59.760 44.000 2.05 0.00 0.00 1.73
269 270 5.130350 GCAAACACCCTAGGCAGATTAATA 58.870 41.667 2.05 0.00 0.00 0.98
270 271 3.954258 GCAAACACCCTAGGCAGATTAAT 59.046 43.478 2.05 0.00 0.00 1.40
271 272 3.352648 GCAAACACCCTAGGCAGATTAA 58.647 45.455 2.05 0.00 0.00 1.40
272 273 2.356741 GGCAAACACCCTAGGCAGATTA 60.357 50.000 2.05 0.00 0.00 1.75
273 274 1.616994 GGCAAACACCCTAGGCAGATT 60.617 52.381 2.05 0.00 0.00 2.40
274 275 0.034089 GGCAAACACCCTAGGCAGAT 60.034 55.000 2.05 0.00 0.00 2.90
275 276 1.378762 GGCAAACACCCTAGGCAGA 59.621 57.895 2.05 0.00 0.00 4.26
276 277 2.040544 CGGCAAACACCCTAGGCAG 61.041 63.158 2.05 0.00 0.00 4.85
277 278 2.033448 CGGCAAACACCCTAGGCA 59.967 61.111 2.05 0.00 0.00 4.75
278 279 3.440415 GCGGCAAACACCCTAGGC 61.440 66.667 2.05 0.00 0.00 3.93
279 280 3.124921 CGCGGCAAACACCCTAGG 61.125 66.667 0.06 0.06 0.00 3.02
280 281 3.799755 GCGCGGCAAACACCCTAG 61.800 66.667 8.83 0.00 0.00 3.02
281 282 4.323477 AGCGCGGCAAACACCCTA 62.323 61.111 8.83 0.00 0.00 3.53
284 285 4.683334 GTCAGCGCGGCAAACACC 62.683 66.667 8.83 0.00 0.00 4.16
285 286 3.862063 CTGTCAGCGCGGCAAACAC 62.862 63.158 8.83 0.00 0.00 3.32
286 287 3.648982 CTGTCAGCGCGGCAAACA 61.649 61.111 8.83 1.20 0.00 2.83
287 288 2.387125 TTTCTGTCAGCGCGGCAAAC 62.387 55.000 8.83 0.00 0.00 2.93
288 289 1.719725 TTTTCTGTCAGCGCGGCAAA 61.720 50.000 8.83 0.80 0.00 3.68
289 290 1.514678 ATTTTCTGTCAGCGCGGCAA 61.515 50.000 8.83 0.00 0.00 4.52
290 291 0.672091 TATTTTCTGTCAGCGCGGCA 60.672 50.000 8.83 4.39 0.00 5.69
291 292 0.657840 ATATTTTCTGTCAGCGCGGC 59.342 50.000 8.83 0.00 0.00 6.53
292 293 1.003545 CCATATTTTCTGTCAGCGCGG 60.004 52.381 8.83 0.00 0.00 6.46
293 294 1.595489 GCCATATTTTCTGTCAGCGCG 60.595 52.381 0.00 0.00 0.00 6.86
294 295 1.401552 TGCCATATTTTCTGTCAGCGC 59.598 47.619 0.00 0.00 0.00 5.92
295 296 3.429085 GTTGCCATATTTTCTGTCAGCG 58.571 45.455 0.00 0.00 0.00 5.18
296 297 3.119849 ACGTTGCCATATTTTCTGTCAGC 60.120 43.478 0.00 0.00 0.00 4.26
297 298 4.083324 ACACGTTGCCATATTTTCTGTCAG 60.083 41.667 0.00 0.00 0.00 3.51
298 299 3.818210 ACACGTTGCCATATTTTCTGTCA 59.182 39.130 0.00 0.00 0.00 3.58
299 300 4.083537 TCACACGTTGCCATATTTTCTGTC 60.084 41.667 0.00 0.00 0.00 3.51
300 301 3.818210 TCACACGTTGCCATATTTTCTGT 59.182 39.130 0.00 0.00 0.00 3.41
301 302 4.158384 GTCACACGTTGCCATATTTTCTG 58.842 43.478 0.00 0.00 0.00 3.02
302 303 3.190535 GGTCACACGTTGCCATATTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
303 304 3.190535 AGGTCACACGTTGCCATATTTTC 59.809 43.478 0.00 0.00 0.00 2.29
304 305 3.153919 AGGTCACACGTTGCCATATTTT 58.846 40.909 0.00 0.00 0.00 1.82
305 306 2.790433 AGGTCACACGTTGCCATATTT 58.210 42.857 0.00 0.00 0.00 1.40
306 307 2.489938 AGGTCACACGTTGCCATATT 57.510 45.000 0.00 0.00 0.00 1.28
307 308 2.027192 AGAAGGTCACACGTTGCCATAT 60.027 45.455 0.00 0.00 0.00 1.78
308 309 1.346395 AGAAGGTCACACGTTGCCATA 59.654 47.619 0.00 0.00 0.00 2.74
309 310 0.108585 AGAAGGTCACACGTTGCCAT 59.891 50.000 0.00 0.00 0.00 4.40
310 311 0.813610 CAGAAGGTCACACGTTGCCA 60.814 55.000 0.00 0.00 0.00 4.92
311 312 0.814010 ACAGAAGGTCACACGTTGCC 60.814 55.000 0.00 0.00 0.00 4.52
312 313 1.014352 AACAGAAGGTCACACGTTGC 58.986 50.000 0.00 0.00 0.00 4.17
313 314 3.245284 CACTAACAGAAGGTCACACGTTG 59.755 47.826 0.00 0.00 0.00 4.10
314 315 3.131577 TCACTAACAGAAGGTCACACGTT 59.868 43.478 0.00 0.00 0.00 3.99
315 316 2.691526 TCACTAACAGAAGGTCACACGT 59.308 45.455 0.00 0.00 0.00 4.49
316 317 3.050619 GTCACTAACAGAAGGTCACACG 58.949 50.000 0.00 0.00 0.00 4.49
317 318 3.181469 TGGTCACTAACAGAAGGTCACAC 60.181 47.826 0.00 0.00 0.00 3.82
318 319 3.035363 TGGTCACTAACAGAAGGTCACA 58.965 45.455 0.00 0.00 0.00 3.58
319 320 3.746045 TGGTCACTAACAGAAGGTCAC 57.254 47.619 0.00 0.00 0.00 3.67
320 321 3.557054 GCATGGTCACTAACAGAAGGTCA 60.557 47.826 0.00 0.00 0.00 4.02
321 322 3.003480 GCATGGTCACTAACAGAAGGTC 58.997 50.000 0.00 0.00 0.00 3.85
322 323 2.371841 TGCATGGTCACTAACAGAAGGT 59.628 45.455 0.00 0.00 0.00 3.50
323 324 3.057969 TGCATGGTCACTAACAGAAGG 57.942 47.619 0.00 0.00 0.00 3.46
324 325 3.181503 GCATGCATGGTCACTAACAGAAG 60.182 47.826 27.34 0.00 0.00 2.85
325 326 2.749076 GCATGCATGGTCACTAACAGAA 59.251 45.455 27.34 0.00 0.00 3.02
326 327 2.290197 TGCATGCATGGTCACTAACAGA 60.290 45.455 27.34 0.00 0.00 3.41
327 328 2.086094 TGCATGCATGGTCACTAACAG 58.914 47.619 27.34 0.00 0.00 3.16
328 329 2.197283 TGCATGCATGGTCACTAACA 57.803 45.000 27.34 11.60 0.00 2.41
329 330 3.379372 AGAATGCATGCATGGTCACTAAC 59.621 43.478 32.79 14.87 36.68 2.34
330 331 3.623703 AGAATGCATGCATGGTCACTAA 58.376 40.909 32.79 1.15 36.68 2.24
331 332 3.286329 AGAATGCATGCATGGTCACTA 57.714 42.857 32.79 2.00 36.68 2.74
332 333 2.139323 AGAATGCATGCATGGTCACT 57.861 45.000 32.79 21.68 36.68 3.41
333 334 2.164827 TCAAGAATGCATGCATGGTCAC 59.835 45.455 32.79 20.05 36.68 3.67
334 335 2.448453 TCAAGAATGCATGCATGGTCA 58.552 42.857 32.79 17.91 36.68 4.02
335 336 3.513680 TTCAAGAATGCATGCATGGTC 57.486 42.857 32.79 25.80 36.68 4.02
336 337 5.069914 ACATATTCAAGAATGCATGCATGGT 59.930 36.000 32.79 19.13 36.68 3.55
337 338 5.538118 ACATATTCAAGAATGCATGCATGG 58.462 37.500 32.79 21.36 36.68 3.66
338 339 7.812669 ACATACATATTCAAGAATGCATGCATG 59.187 33.333 32.79 21.89 36.68 4.06
339 340 7.892609 ACATACATATTCAAGAATGCATGCAT 58.107 30.769 27.46 27.46 38.46 3.96
340 341 7.279750 ACATACATATTCAAGAATGCATGCA 57.720 32.000 25.04 25.04 32.50 3.96
341 342 7.650504 ACAACATACATATTCAAGAATGCATGC 59.349 33.333 11.82 11.82 32.50 4.06
342 343 9.177304 GACAACATACATATTCAAGAATGCATG 57.823 33.333 0.00 5.09 32.50 4.06
343 344 8.905850 TGACAACATACATATTCAAGAATGCAT 58.094 29.630 5.59 0.00 32.50 3.96
344 345 8.278729 TGACAACATACATATTCAAGAATGCA 57.721 30.769 5.59 0.00 32.50 3.96
345 346 9.740239 AATGACAACATACATATTCAAGAATGC 57.260 29.630 5.59 0.00 35.50 3.56
349 350 9.671279 ACTGAATGACAACATACATATTCAAGA 57.329 29.630 0.00 0.00 35.06 3.02
352 353 8.676401 CCAACTGAATGACAACATACATATTCA 58.324 33.333 0.00 0.00 35.50 2.57
353 354 7.645340 GCCAACTGAATGACAACATACATATTC 59.355 37.037 0.00 0.00 35.50 1.75
354 355 7.416664 GGCCAACTGAATGACAACATACATATT 60.417 37.037 0.00 0.00 35.50 1.28
355 356 6.039717 GGCCAACTGAATGACAACATACATAT 59.960 38.462 0.00 0.00 35.50 1.78
356 357 5.356751 GGCCAACTGAATGACAACATACATA 59.643 40.000 0.00 0.00 35.50 2.29
357 358 4.158394 GGCCAACTGAATGACAACATACAT 59.842 41.667 0.00 0.00 35.50 2.29
358 359 3.505680 GGCCAACTGAATGACAACATACA 59.494 43.478 0.00 0.00 35.50 2.29
359 360 3.758554 AGGCCAACTGAATGACAACATAC 59.241 43.478 5.01 0.00 35.50 2.39
360 361 4.032960 AGGCCAACTGAATGACAACATA 57.967 40.909 5.01 0.00 35.50 2.29
361 362 2.880443 AGGCCAACTGAATGACAACAT 58.120 42.857 5.01 0.00 38.50 2.71
362 363 2.361757 CAAGGCCAACTGAATGACAACA 59.638 45.455 5.01 0.00 0.00 3.33
363 364 2.362077 ACAAGGCCAACTGAATGACAAC 59.638 45.455 5.01 0.00 0.00 3.32
364 365 2.665165 ACAAGGCCAACTGAATGACAA 58.335 42.857 5.01 0.00 0.00 3.18
365 366 2.363306 ACAAGGCCAACTGAATGACA 57.637 45.000 5.01 0.00 0.00 3.58
366 367 5.391312 AAATACAAGGCCAACTGAATGAC 57.609 39.130 5.01 0.00 0.00 3.06
367 368 8.995027 ATATAAATACAAGGCCAACTGAATGA 57.005 30.769 5.01 0.00 0.00 2.57
397 398 5.046014 AGACTAGCAGAATGACAAACAGGAT 60.046 40.000 0.00 0.00 39.69 3.24
409 410 6.183360 GCTAACTGTAGTGAGACTAGCAGAAT 60.183 42.308 14.73 9.00 35.43 2.40
539 541 7.480760 AGAAGCAAATTTGGGCTATTCTTTA 57.519 32.000 19.47 0.00 40.01 1.85
674 680 8.874156 TCTAGCAAATACATATTGATCAGTCCT 58.126 33.333 0.00 0.00 0.00 3.85
675 681 9.494271 TTCTAGCAAATACATATTGATCAGTCC 57.506 33.333 0.00 0.00 0.00 3.85
681 687 8.446273 GCACGATTCTAGCAAATACATATTGAT 58.554 33.333 0.00 0.00 0.00 2.57
688 694 3.621268 GGTGCACGATTCTAGCAAATACA 59.379 43.478 11.45 0.00 40.35 2.29
830 836 2.102578 ACCCTGGTATGAGCAAAATGC 58.897 47.619 0.00 0.00 45.46 3.56
831 837 3.091545 ACACCCTGGTATGAGCAAAATG 58.908 45.455 2.46 0.00 0.00 2.32
832 838 3.456380 ACACCCTGGTATGAGCAAAAT 57.544 42.857 2.46 0.00 0.00 1.82
833 839 2.969821 ACACCCTGGTATGAGCAAAA 57.030 45.000 2.46 0.00 0.00 2.44
834 840 2.107378 TGAACACCCTGGTATGAGCAAA 59.893 45.455 2.46 0.00 0.00 3.68
835 841 1.702401 TGAACACCCTGGTATGAGCAA 59.298 47.619 2.46 0.00 0.00 3.91
836 842 1.357137 TGAACACCCTGGTATGAGCA 58.643 50.000 2.46 0.00 0.00 4.26
837 843 2.489938 TTGAACACCCTGGTATGAGC 57.510 50.000 2.46 0.00 0.00 4.26
838 844 6.180472 ACTAAATTGAACACCCTGGTATGAG 58.820 40.000 2.46 0.00 0.00 2.90
839 845 6.012858 AGACTAAATTGAACACCCTGGTATGA 60.013 38.462 2.46 0.00 0.00 2.15
840 846 6.094048 CAGACTAAATTGAACACCCTGGTATG 59.906 42.308 0.00 0.00 0.00 2.39
841 847 6.180472 CAGACTAAATTGAACACCCTGGTAT 58.820 40.000 0.00 0.00 0.00 2.73
842 848 5.072600 ACAGACTAAATTGAACACCCTGGTA 59.927 40.000 0.00 0.00 0.00 3.25
843 849 4.141251 ACAGACTAAATTGAACACCCTGGT 60.141 41.667 0.00 0.00 0.00 4.00
844 850 4.398319 ACAGACTAAATTGAACACCCTGG 58.602 43.478 0.00 0.00 0.00 4.45
845 851 5.762045 CAACAGACTAAATTGAACACCCTG 58.238 41.667 0.00 0.00 0.00 4.45
846 852 4.278419 GCAACAGACTAAATTGAACACCCT 59.722 41.667 0.00 0.00 0.00 4.34
847 853 4.037446 TGCAACAGACTAAATTGAACACCC 59.963 41.667 0.00 0.00 0.00 4.61
848 854 5.181690 TGCAACAGACTAAATTGAACACC 57.818 39.130 0.00 0.00 0.00 4.16
849 855 7.698836 ATTTGCAACAGACTAAATTGAACAC 57.301 32.000 0.00 0.00 0.00 3.32
850 856 8.629158 AGTATTTGCAACAGACTAAATTGAACA 58.371 29.630 0.00 0.00 0.00 3.18
1047 1112 4.722700 CCAGGCCCCCACGACAAG 62.723 72.222 0.00 0.00 0.00 3.16
1146 1211 1.405661 CCAGAACGCCTCCTAACCTTC 60.406 57.143 0.00 0.00 0.00 3.46
1194 1259 0.107654 CTAAGCCAAGCCGCCTAAGT 60.108 55.000 0.00 0.00 0.00 2.24
1230 1295 2.768527 TGCAAAACACCCCAAAATGAGA 59.231 40.909 0.00 0.00 0.00 3.27
1270 1335 2.876550 CTGGATCATGTCGTACTCCGTA 59.123 50.000 0.00 0.00 37.94 4.02
1294 1359 5.965033 ACACATCCAGGAGAATCTTGTAT 57.035 39.130 0.00 0.00 41.16 2.29
1329 1394 0.106149 CACCCGTACCTTGCCTATCC 59.894 60.000 0.00 0.00 0.00 2.59
1402 1467 3.896888 TGCTTTCCCAGATGACAAAATGT 59.103 39.130 0.00 0.00 0.00 2.71
1466 1531 1.065491 TCCAGATTGAATCCCCACACG 60.065 52.381 0.75 0.00 0.00 4.49
1491 1556 3.414269 TGCTGACATCAATCACACACAT 58.586 40.909 0.00 0.00 0.00 3.21
1542 1607 5.825679 AGTACTGCACAACAAATTTAGTCCA 59.174 36.000 0.00 0.00 0.00 4.02
1543 1608 6.017440 TCAGTACTGCACAACAAATTTAGTCC 60.017 38.462 18.45 0.00 0.00 3.85
1607 1672 7.156000 TGTTGTGTCGAAATAGGACAAGAATA 58.844 34.615 0.00 0.00 45.20 1.75
1619 1684 9.436957 ACTCTAATCTTAATGTTGTGTCGAAAT 57.563 29.630 0.00 0.00 0.00 2.17
1646 1711 3.456280 GGCAAAACATTCAGAAAGCACA 58.544 40.909 0.00 0.00 0.00 4.57
1688 1753 1.808945 CACCCTTAGCTCAGTTTGCTG 59.191 52.381 0.00 0.00 41.32 4.41
1792 1857 4.469227 AGAGTGCTGGATGAGACAAGTATT 59.531 41.667 0.00 0.00 0.00 1.89
1796 1861 2.233186 TCAGAGTGCTGGATGAGACAAG 59.767 50.000 0.00 0.00 42.53 3.16
1828 1893 7.336679 TCACGTCATCATCAGGATTAAAACAAT 59.663 33.333 0.00 0.00 32.57 2.71
1854 1919 9.393786 AGGAATATGGTGTCCACTTTATACTAT 57.606 33.333 0.00 0.00 35.80 2.12
1885 1950 7.546358 TGAAACAAGTTATCCCTTATGCATTG 58.454 34.615 3.54 0.00 0.00 2.82
1897 1962 6.375455 ACCAGGACATGATGAAACAAGTTATC 59.625 38.462 0.00 0.00 0.00 1.75
1902 1967 5.458041 AAACCAGGACATGATGAAACAAG 57.542 39.130 0.00 0.00 0.00 3.16
1943 2008 0.685660 GGACCAAGAGTTCCGGAAGT 59.314 55.000 24.62 24.62 0.00 3.01
2018 2083 6.884295 AGTATACCATGCAAAGTGTTACACAT 59.116 34.615 18.19 2.31 36.74 3.21
2028 2093 8.345565 GTCCATTTAGAAGTATACCATGCAAAG 58.654 37.037 0.00 0.00 0.00 2.77
2059 2124 1.595109 GATGATGGACGCCGCATGA 60.595 57.895 0.00 0.00 0.00 3.07
2089 2154 4.871933 TCTGCAGTTGAACATCTAGTCA 57.128 40.909 14.67 0.00 0.00 3.41
2239 2308 9.499585 CTCAATCAATAAGCAACTATGTCAAAG 57.500 33.333 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.