Multiple sequence alignment - TraesCS7D01G117400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G117400 chr7D 100.000 3801 0 0 1 3801 72433671 72437471 0.000000e+00 7020.0
1 TraesCS7D01G117400 chr7D 98.726 314 3 1 3488 3801 607926111 607926423 1.190000e-154 556.0
2 TraesCS7D01G117400 chr7D 98.089 314 5 1 3488 3801 72442685 72442997 2.580000e-151 545.0
3 TraesCS7D01G117400 chr7D 98.377 308 5 0 3492 3799 575775061 575775368 3.340000e-150 542.0
4 TraesCS7D01G117400 chr7D 97.419 310 8 0 3492 3801 607920566 607920875 2.600000e-146 529.0
5 TraesCS7D01G117400 chr7D 97.115 312 7 2 3488 3799 575781203 575781512 3.360000e-145 525.0
6 TraesCS7D01G117400 chr7D 84.286 70 2 6 537 599 219640114 219640181 4.100000e-05 60.2
7 TraesCS7D01G117400 chr7A 94.404 2341 85 14 1 2306 77529292 77531621 0.000000e+00 3555.0
8 TraesCS7D01G117400 chr7A 93.640 566 24 9 2499 3059 77532109 77532667 0.000000e+00 835.0
9 TraesCS7D01G117400 chr7A 96.859 191 6 0 3134 3324 77590631 77590821 1.700000e-83 320.0
10 TraesCS7D01G117400 chr7A 89.412 255 21 4 3071 3324 77532739 77532988 2.200000e-82 316.0
11 TraesCS7D01G117400 chr7A 94.203 138 5 3 2336 2470 77531622 77531759 1.380000e-49 207.0
12 TraesCS7D01G117400 chr7B 93.624 596 27 8 1883 2470 15827728 15827136 0.000000e+00 880.0
13 TraesCS7D01G117400 chr7B 92.883 562 35 2 1299 1860 15828372 15827816 0.000000e+00 811.0
14 TraesCS7D01G117400 chr7B 86.847 593 40 12 2479 3060 15827086 15826521 2.490000e-176 628.0
15 TraesCS7D01G117400 chr7B 85.314 606 64 14 698 1298 15828998 15828413 1.510000e-168 603.0
16 TraesCS7D01G117400 chr7B 88.306 248 25 2 3077 3324 15826452 15826209 1.030000e-75 294.0
17 TraesCS7D01G117400 chr7B 89.831 59 3 2 544 599 715364818 715364760 5.270000e-09 73.1
18 TraesCS7D01G117400 chr7B 89.362 47 2 3 537 582 228388073 228388117 5.300000e-04 56.5
19 TraesCS7D01G117400 chr7B 100.000 28 0 0 34 61 552568561 552568534 7.000000e-03 52.8
20 TraesCS7D01G117400 chr5D 96.190 315 7 4 3488 3799 520742492 520742804 9.420000e-141 510.0
21 TraesCS7D01G117400 chr5D 96.117 309 10 2 3492 3799 15360322 15360629 1.580000e-138 503.0
22 TraesCS7D01G117400 chr5D 95.820 311 10 2 3492 3799 520728363 520728673 2.040000e-137 499.0
23 TraesCS7D01G117400 chr2D 95.847 313 11 2 3488 3799 18144098 18144409 4.380000e-139 505.0
24 TraesCS7D01G117400 chr2D 91.935 62 5 0 1 62 421145679 421145618 1.880000e-13 87.9
25 TraesCS7D01G117400 chr2D 89.474 57 3 1 3323 3376 55912403 55912347 6.810000e-08 69.4
26 TraesCS7D01G117400 chr2D 85.714 63 2 4 3323 3385 38506865 38506920 4.100000e-05 60.2
27 TraesCS7D01G117400 chr2D 100.000 28 0 0 34 61 243664295 243664322 7.000000e-03 52.8
28 TraesCS7D01G117400 chr3D 86.697 436 40 7 852 1287 611541596 611542013 5.750000e-128 468.0
29 TraesCS7D01G117400 chr1A 83.333 120 16 3 3324 3441 581166700 581166583 1.440000e-19 108.0
30 TraesCS7D01G117400 chr4D 85.567 97 14 0 3323 3419 481440495 481440591 6.720000e-18 102.0
31 TraesCS7D01G117400 chr4D 100.000 43 0 0 358 400 85599696 85599654 3.150000e-11 80.5
32 TraesCS7D01G117400 chr4B 82.500 120 17 4 3324 3441 175899497 175899380 6.720000e-18 102.0
33 TraesCS7D01G117400 chr4B 75.728 206 35 12 230 422 75527619 75527822 5.230000e-14 89.8
34 TraesCS7D01G117400 chr5B 92.063 63 5 0 3323 3385 682892609 682892671 5.230000e-14 89.8
35 TraesCS7D01G117400 chr5B 75.419 179 34 8 226 396 667842572 667842396 1.130000e-10 78.7
36 TraesCS7D01G117400 chr2B 77.703 148 27 4 280 421 746713409 746713262 6.770000e-13 86.1
37 TraesCS7D01G117400 chr2B 94.118 51 2 1 3323 3373 649206361 649206312 4.070000e-10 76.8
38 TraesCS7D01G117400 chr2B 100.000 28 0 0 34 61 337073770 337073743 7.000000e-03 52.8
39 TraesCS7D01G117400 chr1D 91.803 61 5 0 3324 3384 408898772 408898712 6.770000e-13 86.1
40 TraesCS7D01G117400 chr5A 87.838 74 6 2 3312 3385 666922347 666922417 2.430000e-12 84.2
41 TraesCS7D01G117400 chr5A 97.297 37 1 0 317 353 692364439 692364475 3.170000e-06 63.9
42 TraesCS7D01G117400 chr1B 80.000 115 20 3 241 353 420562378 420562265 8.750000e-12 82.4
43 TraesCS7D01G117400 chr1B 85.294 68 3 4 537 599 27347650 27347715 3.170000e-06 63.9
44 TraesCS7D01G117400 chr3A 86.765 68 6 3 358 424 579069950 579069885 5.270000e-09 73.1
45 TraesCS7D01G117400 chr6B 86.364 66 6 3 360 422 277138871 277138936 6.810000e-08 69.4
46 TraesCS7D01G117400 chr6B 94.444 36 0 2 537 572 36446458 36446491 2.000000e-03 54.7
47 TraesCS7D01G117400 chr3B 83.117 77 6 5 537 608 409536772 409536846 3.170000e-06 63.9
48 TraesCS7D01G117400 chr2A 100.000 28 0 0 34 61 283949389 283949416 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G117400 chr7D 72433671 72437471 3800 False 7020.00 7020 100.00000 1 3801 1 chr7D.!!$F1 3800
1 TraesCS7D01G117400 chr7A 77529292 77532988 3696 False 1228.25 3555 92.91475 1 3324 4 chr7A.!!$F2 3323
2 TraesCS7D01G117400 chr7B 15826209 15828998 2789 True 643.20 880 89.39480 698 3324 5 chr7B.!!$R3 2626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 960 0.179184 GTCGAGCTTCTCACGGTCTC 60.179 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2895 3381 0.165295 CACGCAGAGTGCATCAGTTG 59.835 55.0 0.0 0.0 45.36 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 3.835378 TTTTCCGGCGACCTAAAATTC 57.165 42.857 9.30 0.00 0.00 2.17
88 89 2.476126 TTCCGGCGACCTAAAATTCA 57.524 45.000 9.30 0.00 0.00 2.57
110 111 3.119708 ACGTTCTAGTAGCCTAAACCACG 60.120 47.826 0.00 0.00 0.00 4.94
117 118 4.062991 AGTAGCCTAAACCACGTTTTCAG 58.937 43.478 0.00 0.00 37.01 3.02
166 167 5.918011 GGAGATGCTCTTCTATGTAAGTTCG 59.082 44.000 0.00 0.00 0.00 3.95
215 216 8.780846 ATGTTGAACGTTGGTTAATGTATCTA 57.219 30.769 5.00 0.00 36.24 1.98
228 229 7.171678 GGTTAATGTATCTAGTGACTTGGCATC 59.828 40.741 0.00 0.00 0.00 3.91
296 297 5.022122 TCATTCAGTGAGAGGAGATGTTCT 58.978 41.667 0.00 0.00 31.80 3.01
328 329 0.985549 GCGTCTGTGATGACTTCGTC 59.014 55.000 0.00 0.00 35.00 4.20
333 334 2.628178 TCTGTGATGACTTCGTCAACCT 59.372 45.455 2.65 0.00 45.96 3.50
373 374 2.511452 CGGGAGGTGCTCATAGGGG 61.511 68.421 0.00 0.00 31.08 4.79
378 379 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
381 382 1.002544 GTGCTCATAGGGGTAGGATGC 59.997 57.143 0.00 0.00 0.00 3.91
386 387 1.816863 ATAGGGGTAGGATGCGCGTG 61.817 60.000 6.97 0.00 33.59 5.34
401 402 1.368641 GCGTGTGTGCATTCATAGGA 58.631 50.000 0.00 0.00 34.15 2.94
410 411 7.442364 GTGTGTGCATTCATAGGATAAGTGTAT 59.558 37.037 0.00 0.00 0.00 2.29
441 442 7.955918 TGTATGTGAGTATCTATGATTGTGCT 58.044 34.615 0.00 0.00 34.92 4.40
471 472 0.250989 AAACCGGATGGCCTTTTCGA 60.251 50.000 9.46 0.00 39.70 3.71
472 473 0.676782 AACCGGATGGCCTTTTCGAG 60.677 55.000 9.46 0.00 39.70 4.04
483 484 4.058124 GGCCTTTTCGAGCAAAGAAAAAT 58.942 39.130 10.51 0.00 44.02 1.82
487 488 6.200097 GCCTTTTCGAGCAAAGAAAAATAACA 59.800 34.615 10.51 0.00 44.02 2.41
503 504 2.486472 AACAGAATGCACCAGAGAGG 57.514 50.000 0.00 0.00 42.53 3.69
544 545 4.260334 GCATTTTTGCCAGTTTGACTCAAC 60.260 41.667 0.00 0.00 0.00 3.18
565 566 9.203421 CTCAACATGTGTACTCTTTGTAATACA 57.797 33.333 0.00 0.00 36.01 2.29
634 635 2.093106 GACCACAGAGACATACGACCT 58.907 52.381 0.00 0.00 0.00 3.85
738 769 4.817517 CCGCCTAATTACTACCTACATGG 58.182 47.826 0.00 0.00 42.93 3.66
864 895 1.452651 CGCCCATCAGTGATTGCCT 60.453 57.895 15.41 0.00 0.00 4.75
867 898 1.408683 GCCCATCAGTGATTGCCTGTA 60.409 52.381 1.86 0.00 0.00 2.74
870 901 3.434024 CCCATCAGTGATTGCCTGTATCA 60.434 47.826 1.86 0.00 0.00 2.15
872 903 4.825634 CCATCAGTGATTGCCTGTATCAAT 59.174 41.667 1.86 0.00 36.91 2.57
902 933 6.153510 GGCTTATTTCTTTCCCAGTTGATTCT 59.846 38.462 0.00 0.00 0.00 2.40
929 960 0.179184 GTCGAGCTTCTCACGGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
939 970 5.665459 CTTCTCACGGTCTCCTTCATTATT 58.335 41.667 0.00 0.00 0.00 1.40
945 976 6.984474 TCACGGTCTCCTTCATTATTTATCAC 59.016 38.462 0.00 0.00 0.00 3.06
954 985 8.224025 TCCTTCATTATTTATCACCATTAGCCA 58.776 33.333 0.00 0.00 0.00 4.75
989 1020 9.132923 TCATCTGTTTAGACTAATAGGTACAGG 57.867 37.037 17.79 8.16 35.34 4.00
995 1027 8.462016 GTTTAGACTAATAGGTACAGGACGAAA 58.538 37.037 0.00 0.00 0.00 3.46
1064 1096 5.730296 AGTGTTGTAGCACTCTTCATAGT 57.270 39.130 0.00 0.00 45.63 2.12
1128 1160 2.288729 GGTGGTTAAAAGCGTCTTCGTT 59.711 45.455 0.00 0.00 39.49 3.85
1134 1166 1.878953 AAAGCGTCTTCGTTGACCAT 58.121 45.000 5.33 0.00 39.49 3.55
1182 1214 2.125512 GCAGCCATCGACTCCGTT 60.126 61.111 0.00 0.00 37.05 4.44
1240 1272 2.380410 GCCGGCACTTACACGTGAG 61.380 63.158 24.80 12.92 37.06 3.51
1241 1273 1.287815 CCGGCACTTACACGTGAGA 59.712 57.895 25.01 6.70 37.06 3.27
1365 1440 5.400066 TGGATACACGATGAAGTGAGAAA 57.600 39.130 4.00 0.00 46.17 2.52
1370 1445 4.693283 ACACGATGAAGTGAGAAAGTGAA 58.307 39.130 4.00 0.00 44.43 3.18
1398 1473 6.210385 TGCCATTTAACAAAAGCTTCATCCTA 59.790 34.615 0.00 0.00 0.00 2.94
1535 1610 2.477375 GCGACATCACGTTCAAGGTTAA 59.523 45.455 0.00 0.00 35.59 2.01
1548 1623 6.094881 CGTTCAAGGTTAATATGTCACCCAAT 59.905 38.462 0.00 0.00 0.00 3.16
1630 1705 6.586463 AGTTGTCATTGTAGAACACATACGAG 59.414 38.462 0.00 0.00 36.90 4.18
1878 2026 3.303725 CGTTGTCAATGACGGAATTGTGT 60.304 43.478 9.00 0.00 38.46 3.72
2191 2339 2.294233 TGGATTTTGTGCTTCTGAGTGC 59.706 45.455 0.00 0.00 0.00 4.40
2192 2340 2.555757 GGATTTTGTGCTTCTGAGTGCT 59.444 45.455 6.36 0.00 0.00 4.40
2465 2621 0.109086 CTACACGTGCTCCCTCTGTG 60.109 60.000 17.22 0.00 36.64 3.66
2470 2626 0.668706 CGTGCTCCCTCTGTGAACTG 60.669 60.000 0.00 0.00 0.00 3.16
2471 2627 0.394565 GTGCTCCCTCTGTGAACTGT 59.605 55.000 0.00 0.00 0.00 3.55
2472 2628 1.618837 GTGCTCCCTCTGTGAACTGTA 59.381 52.381 0.00 0.00 0.00 2.74
2473 2629 2.234908 GTGCTCCCTCTGTGAACTGTAT 59.765 50.000 0.00 0.00 0.00 2.29
2474 2630 2.906389 TGCTCCCTCTGTGAACTGTATT 59.094 45.455 0.00 0.00 0.00 1.89
2475 2631 4.081642 GTGCTCCCTCTGTGAACTGTATTA 60.082 45.833 0.00 0.00 0.00 0.98
2476 2632 4.160439 TGCTCCCTCTGTGAACTGTATTAG 59.840 45.833 0.00 0.00 0.00 1.73
2575 3055 6.457528 GCTTCTGTGCTCACATAATAGTTTCC 60.458 42.308 2.90 0.00 41.01 3.13
2584 3064 7.107639 TCACATAATAGTTTCCTGTCGATCA 57.892 36.000 0.00 0.00 0.00 2.92
2587 3067 7.439356 CACATAATAGTTTCCTGTCGATCATGT 59.561 37.037 0.00 0.00 0.00 3.21
2596 3076 6.525578 TCCTGTCGATCATGTAGTTAAACT 57.474 37.500 0.00 0.00 0.00 2.66
2751 3231 3.925688 GCAAATCGCTAGATTCGTCAA 57.074 42.857 0.00 0.00 45.66 3.18
2813 3299 0.745845 ACGCTAGCAAATCCAGCAGG 60.746 55.000 16.45 0.00 34.94 4.85
2871 3357 0.601311 GATCATGTGCCGGGACTAGC 60.601 60.000 27.28 11.56 0.00 3.42
2872 3358 1.050988 ATCATGTGCCGGGACTAGCT 61.051 55.000 27.28 8.20 0.00 3.32
2873 3359 0.396556 TCATGTGCCGGGACTAGCTA 60.397 55.000 27.28 6.59 0.00 3.32
2874 3360 0.249489 CATGTGCCGGGACTAGCTAC 60.249 60.000 27.28 0.00 0.00 3.58
2895 3381 2.481568 CGATGCATGTATCACCCATGAC 59.518 50.000 21.58 0.00 41.78 3.06
2936 3422 7.087639 CGTGAATGGGAGCTGTTTAATAAAAA 58.912 34.615 0.00 0.00 0.00 1.94
2937 3423 7.759433 CGTGAATGGGAGCTGTTTAATAAAAAT 59.241 33.333 0.00 0.00 0.00 1.82
2968 3454 7.006509 AGGGGTGTTTAATTATCTCATCATGG 58.993 38.462 0.00 0.00 0.00 3.66
3023 3509 1.640149 TCCTCATTTTCCATGCCAGGA 59.360 47.619 0.00 0.00 35.41 3.86
3059 3546 8.027189 GGAACAACCTGAAAATGGTAATAGAAC 58.973 37.037 0.00 0.00 36.69 3.01
3061 3548 8.472007 ACAACCTGAAAATGGTAATAGAACAA 57.528 30.769 0.00 0.00 36.69 2.83
3119 3667 3.007635 GCCTACAAACGTAAGGAATGCT 58.992 45.455 9.62 0.00 46.39 3.79
3121 3669 4.082949 GCCTACAAACGTAAGGAATGCTTT 60.083 41.667 9.62 0.00 46.39 3.51
3143 3692 9.435688 GCTTTGATCCCAACAATTTAAAATAGT 57.564 29.630 0.00 0.00 30.88 2.12
3175 3724 2.034532 CACATGGCTGCTCCCACA 59.965 61.111 0.00 0.00 37.79 4.17
3195 3744 8.701895 TCCCACATAAAATATCTTTCTCTACGT 58.298 33.333 0.00 0.00 0.00 3.57
3196 3745 9.326413 CCCACATAAAATATCTTTCTCTACGTT 57.674 33.333 0.00 0.00 0.00 3.99
3216 3765 2.363306 TTCTCTTGCTGGGCTGAAAA 57.637 45.000 0.00 0.00 0.00 2.29
3218 3767 3.719268 TCTCTTGCTGGGCTGAAAATA 57.281 42.857 0.00 0.00 0.00 1.40
3243 3792 8.884124 ATTTTCAGGGAAAGATTGAGTATGAA 57.116 30.769 0.00 0.00 32.93 2.57
3300 3849 9.985730 ATCACATTTCAACAACTATTTGTGATT 57.014 25.926 8.88 0.00 46.03 2.57
3301 3850 9.814899 TCACATTTCAACAACTATTTGTGATTT 57.185 25.926 0.00 0.00 45.69 2.17
3324 3873 4.970662 AAGGACACATATTCACATGCAC 57.029 40.909 0.00 0.00 0.00 4.57
3325 3874 4.226427 AGGACACATATTCACATGCACT 57.774 40.909 0.00 0.00 0.00 4.40
3326 3875 5.357742 AGGACACATATTCACATGCACTA 57.642 39.130 0.00 0.00 0.00 2.74
3327 3876 5.363101 AGGACACATATTCACATGCACTAG 58.637 41.667 0.00 0.00 0.00 2.57
3328 3877 4.512944 GGACACATATTCACATGCACTAGG 59.487 45.833 0.00 0.00 0.00 3.02
3329 3878 5.102953 ACACATATTCACATGCACTAGGT 57.897 39.130 0.00 0.00 0.00 3.08
3330 3879 6.233905 ACACATATTCACATGCACTAGGTA 57.766 37.500 0.00 0.00 0.00 3.08
3331 3880 6.283694 ACACATATTCACATGCACTAGGTAG 58.716 40.000 0.00 0.00 0.00 3.18
3332 3881 5.698089 CACATATTCACATGCACTAGGTAGG 59.302 44.000 0.00 0.00 0.00 3.18
3333 3882 5.602561 ACATATTCACATGCACTAGGTAGGA 59.397 40.000 0.00 0.00 0.00 2.94
3334 3883 6.099701 ACATATTCACATGCACTAGGTAGGAA 59.900 38.462 0.00 0.00 0.00 3.36
3335 3884 4.901197 TTCACATGCACTAGGTAGGAAA 57.099 40.909 0.00 0.00 0.00 3.13
3336 3885 5.435686 TTCACATGCACTAGGTAGGAAAT 57.564 39.130 0.00 0.00 0.00 2.17
3337 3886 4.769688 TCACATGCACTAGGTAGGAAATG 58.230 43.478 0.00 0.00 0.00 2.32
3338 3887 3.313526 CACATGCACTAGGTAGGAAATGC 59.686 47.826 0.00 0.00 0.00 3.56
3339 3888 2.309528 TGCACTAGGTAGGAAATGCG 57.690 50.000 0.00 0.00 35.83 4.73
3340 3889 1.134521 TGCACTAGGTAGGAAATGCGG 60.135 52.381 0.00 0.00 35.83 5.69
3341 3890 1.583054 CACTAGGTAGGAAATGCGGC 58.417 55.000 0.00 0.00 0.00 6.53
3342 3891 1.139058 CACTAGGTAGGAAATGCGGCT 59.861 52.381 0.00 0.00 0.00 5.52
3343 3892 1.838077 ACTAGGTAGGAAATGCGGCTT 59.162 47.619 0.00 0.00 0.00 4.35
3344 3893 2.213499 CTAGGTAGGAAATGCGGCTTG 58.787 52.381 0.00 0.00 0.00 4.01
3345 3894 1.032114 AGGTAGGAAATGCGGCTTGC 61.032 55.000 0.00 0.00 46.70 4.01
3346 3895 1.433471 GTAGGAAATGCGGCTTGCC 59.567 57.895 0.00 0.75 45.60 4.52
3347 3896 2.112198 TAGGAAATGCGGCTTGCCG 61.112 57.895 27.32 27.32 45.60 5.69
3373 3922 4.394712 AGCACTGCTGCCGGGTAC 62.395 66.667 2.18 0.00 45.53 3.34
3374 3923 4.697756 GCACTGCTGCCGGGTACA 62.698 66.667 2.18 0.00 37.45 2.90
3375 3924 2.434884 CACTGCTGCCGGGTACAG 60.435 66.667 2.18 2.92 38.22 2.74
3380 3929 3.226242 CTGCCGGGTACAGCCATA 58.774 61.111 2.18 0.00 39.65 2.74
3381 3930 1.754745 CTGCCGGGTACAGCCATAT 59.245 57.895 2.18 0.00 39.65 1.78
3382 3931 0.320771 CTGCCGGGTACAGCCATATC 60.321 60.000 2.18 0.00 39.65 1.63
3383 3932 1.003718 GCCGGGTACAGCCATATCC 60.004 63.158 2.18 0.00 39.65 2.59
3384 3933 1.764571 GCCGGGTACAGCCATATCCA 61.765 60.000 2.18 0.00 39.65 3.41
3385 3934 0.984230 CCGGGTACAGCCATATCCAT 59.016 55.000 0.00 0.00 39.65 3.41
3386 3935 1.066143 CCGGGTACAGCCATATCCATC 60.066 57.143 0.00 0.00 39.65 3.51
3387 3936 1.623311 CGGGTACAGCCATATCCATCA 59.377 52.381 0.00 0.00 39.65 3.07
3388 3937 2.612972 CGGGTACAGCCATATCCATCAC 60.613 54.545 0.00 0.00 39.65 3.06
3389 3938 2.639839 GGGTACAGCCATATCCATCACT 59.360 50.000 0.00 0.00 39.65 3.41
3390 3939 3.557898 GGGTACAGCCATATCCATCACTG 60.558 52.174 0.00 0.00 39.65 3.66
3391 3940 2.267174 ACAGCCATATCCATCACTGC 57.733 50.000 0.00 0.00 0.00 4.40
3392 3941 1.773052 ACAGCCATATCCATCACTGCT 59.227 47.619 0.00 0.00 0.00 4.24
3393 3942 2.152016 CAGCCATATCCATCACTGCTG 58.848 52.381 0.00 0.00 38.78 4.41
3394 3943 1.073444 AGCCATATCCATCACTGCTGG 59.927 52.381 0.00 0.00 34.93 4.85
3395 3944 1.885359 GCCATATCCATCACTGCTGGG 60.885 57.143 0.00 0.00 34.36 4.45
3396 3945 1.422781 CCATATCCATCACTGCTGGGT 59.577 52.381 0.00 0.00 34.36 4.51
3397 3946 2.639347 CCATATCCATCACTGCTGGGTA 59.361 50.000 0.00 0.00 33.95 3.69
3398 3947 3.072915 CCATATCCATCACTGCTGGGTAA 59.927 47.826 0.00 0.00 33.18 2.85
3399 3948 4.446167 CCATATCCATCACTGCTGGGTAAA 60.446 45.833 0.00 0.00 33.18 2.01
3400 3949 3.737559 ATCCATCACTGCTGGGTAAAA 57.262 42.857 0.00 0.00 34.36 1.52
3401 3950 3.737559 TCCATCACTGCTGGGTAAAAT 57.262 42.857 0.00 0.00 34.36 1.82
3402 3951 3.620488 TCCATCACTGCTGGGTAAAATC 58.380 45.455 0.00 0.00 34.36 2.17
3403 3952 3.010027 TCCATCACTGCTGGGTAAAATCA 59.990 43.478 0.00 0.00 34.36 2.57
3404 3953 3.129287 CCATCACTGCTGGGTAAAATCAC 59.871 47.826 0.00 0.00 0.00 3.06
3405 3954 3.500448 TCACTGCTGGGTAAAATCACA 57.500 42.857 0.00 0.00 0.00 3.58
3406 3955 4.032960 TCACTGCTGGGTAAAATCACAT 57.967 40.909 0.00 0.00 0.00 3.21
3407 3956 4.009675 TCACTGCTGGGTAAAATCACATC 58.990 43.478 0.00 0.00 0.00 3.06
3408 3957 3.129287 CACTGCTGGGTAAAATCACATCC 59.871 47.826 0.00 0.00 0.00 3.51
3409 3958 3.245229 ACTGCTGGGTAAAATCACATCCA 60.245 43.478 0.00 0.00 0.00 3.41
3410 3959 3.763360 CTGCTGGGTAAAATCACATCCAA 59.237 43.478 0.00 0.00 0.00 3.53
3411 3960 4.352009 TGCTGGGTAAAATCACATCCAAT 58.648 39.130 0.00 0.00 0.00 3.16
3412 3961 4.402155 TGCTGGGTAAAATCACATCCAATC 59.598 41.667 0.00 0.00 0.00 2.67
3413 3962 4.202151 GCTGGGTAAAATCACATCCAATCC 60.202 45.833 0.00 0.00 0.00 3.01
3414 3963 5.203528 CTGGGTAAAATCACATCCAATCCT 58.796 41.667 0.00 0.00 0.00 3.24
3415 3964 4.955450 TGGGTAAAATCACATCCAATCCTG 59.045 41.667 0.00 0.00 0.00 3.86
3416 3965 4.956075 GGGTAAAATCACATCCAATCCTGT 59.044 41.667 0.00 0.00 0.00 4.00
3417 3966 6.126409 GGGTAAAATCACATCCAATCCTGTA 58.874 40.000 0.00 0.00 0.00 2.74
3418 3967 6.605594 GGGTAAAATCACATCCAATCCTGTAA 59.394 38.462 0.00 0.00 0.00 2.41
3419 3968 7.287696 GGGTAAAATCACATCCAATCCTGTAAT 59.712 37.037 0.00 0.00 0.00 1.89
3420 3969 9.349713 GGTAAAATCACATCCAATCCTGTAATA 57.650 33.333 0.00 0.00 0.00 0.98
3422 3971 8.821686 AAAATCACATCCAATCCTGTAATACA 57.178 30.769 0.00 0.00 0.00 2.29
3423 3972 8.821686 AAATCACATCCAATCCTGTAATACAA 57.178 30.769 0.00 0.00 0.00 2.41
3424 3973 7.807977 ATCACATCCAATCCTGTAATACAAC 57.192 36.000 0.00 0.00 0.00 3.32
3425 3974 6.119536 TCACATCCAATCCTGTAATACAACC 58.880 40.000 0.00 0.00 0.00 3.77
3426 3975 5.885352 CACATCCAATCCTGTAATACAACCA 59.115 40.000 0.00 0.00 0.00 3.67
3427 3976 6.547141 CACATCCAATCCTGTAATACAACCAT 59.453 38.462 0.00 0.00 0.00 3.55
3428 3977 7.068593 CACATCCAATCCTGTAATACAACCATT 59.931 37.037 0.00 0.00 0.00 3.16
3429 3978 7.068593 ACATCCAATCCTGTAATACAACCATTG 59.931 37.037 9.78 9.78 0.00 2.82
3430 3979 5.890985 TCCAATCCTGTAATACAACCATTGG 59.109 40.000 20.73 20.73 38.59 3.16
3431 3980 5.890985 CCAATCCTGTAATACAACCATTGGA 59.109 40.000 21.52 12.87 39.05 3.53
3432 3981 6.039717 CCAATCCTGTAATACAACCATTGGAG 59.960 42.308 21.52 4.02 39.05 3.86
3433 3982 4.523083 TCCTGTAATACAACCATTGGAGC 58.477 43.478 10.37 0.00 34.12 4.70
3434 3983 4.018870 TCCTGTAATACAACCATTGGAGCA 60.019 41.667 10.37 0.00 34.12 4.26
3435 3984 4.889409 CCTGTAATACAACCATTGGAGCAT 59.111 41.667 10.37 0.00 34.12 3.79
3436 3985 5.360714 CCTGTAATACAACCATTGGAGCATT 59.639 40.000 10.37 6.64 34.12 3.56
3437 3986 6.206395 TGTAATACAACCATTGGAGCATTG 57.794 37.500 10.37 5.97 34.12 2.82
3438 3987 3.806625 ATACAACCATTGGAGCATTGC 57.193 42.857 10.37 0.00 34.12 3.56
3439 3988 1.340088 ACAACCATTGGAGCATTGCA 58.660 45.000 10.37 0.00 34.12 4.08
3440 3989 1.693062 ACAACCATTGGAGCATTGCAA 59.307 42.857 10.37 0.00 39.07 4.08
3441 3990 2.104451 ACAACCATTGGAGCATTGCAAA 59.896 40.909 10.37 2.75 38.19 3.68
3442 3991 3.244630 ACAACCATTGGAGCATTGCAAAT 60.245 39.130 10.37 5.04 38.19 2.32
3443 3992 4.020396 ACAACCATTGGAGCATTGCAAATA 60.020 37.500 10.37 0.00 38.19 1.40
3444 3993 5.120399 CAACCATTGGAGCATTGCAAATAT 58.880 37.500 10.37 0.00 38.19 1.28
3445 3994 6.127111 ACAACCATTGGAGCATTGCAAATATA 60.127 34.615 10.37 0.00 38.19 0.86
3446 3995 6.482898 ACCATTGGAGCATTGCAAATATAA 57.517 33.333 10.37 0.00 38.19 0.98
3447 3996 6.887013 ACCATTGGAGCATTGCAAATATAAA 58.113 32.000 10.37 0.00 38.19 1.40
3448 3997 7.337167 ACCATTGGAGCATTGCAAATATAAAA 58.663 30.769 10.37 0.00 38.19 1.52
3449 3998 7.828223 ACCATTGGAGCATTGCAAATATAAAAA 59.172 29.630 10.37 0.00 38.19 1.94
3475 4024 9.569122 AAACTTAATATTGGTTCAGTACAGTGT 57.431 29.630 0.00 0.00 0.00 3.55
3476 4025 8.773404 ACTTAATATTGGTTCAGTACAGTGTC 57.227 34.615 0.00 0.00 0.00 3.67
3477 4026 8.372459 ACTTAATATTGGTTCAGTACAGTGTCA 58.628 33.333 0.00 0.00 0.00 3.58
3478 4027 9.383519 CTTAATATTGGTTCAGTACAGTGTCAT 57.616 33.333 0.00 0.00 0.00 3.06
3480 4029 8.718102 AATATTGGTTCAGTACAGTGTCATAC 57.282 34.615 0.00 0.00 0.00 2.39
3481 4030 5.538849 TTGGTTCAGTACAGTGTCATACA 57.461 39.130 0.00 0.00 0.00 2.29
3496 4045 7.559835 GTGTCATACACGAATCATCTGATAG 57.440 40.000 0.00 0.00 39.53 2.08
3497 4046 7.363431 GTGTCATACACGAATCATCTGATAGA 58.637 38.462 0.00 0.00 39.53 1.98
3498 4047 7.862873 GTGTCATACACGAATCATCTGATAGAA 59.137 37.037 0.00 0.00 39.53 2.10
3499 4048 7.862873 TGTCATACACGAATCATCTGATAGAAC 59.137 37.037 0.00 0.00 33.73 3.01
3500 4049 8.079203 GTCATACACGAATCATCTGATAGAACT 58.921 37.037 0.00 0.00 33.73 3.01
3501 4050 8.633561 TCATACACGAATCATCTGATAGAACTT 58.366 33.333 0.00 0.00 33.73 2.66
3502 4051 9.254133 CATACACGAATCATCTGATAGAACTTT 57.746 33.333 0.00 0.00 33.73 2.66
3504 4053 8.864069 ACACGAATCATCTGATAGAACTTTAG 57.136 34.615 0.00 0.00 33.73 1.85
3505 4054 8.687242 ACACGAATCATCTGATAGAACTTTAGA 58.313 33.333 0.00 0.00 33.73 2.10
3506 4055 9.689976 CACGAATCATCTGATAGAACTTTAGAT 57.310 33.333 0.00 0.00 33.73 1.98
3507 4056 9.906660 ACGAATCATCTGATAGAACTTTAGATC 57.093 33.333 0.00 0.00 33.73 2.75
3508 4057 9.060547 CGAATCATCTGATAGAACTTTAGATCG 57.939 37.037 0.00 0.00 33.73 3.69
3509 4058 9.352784 GAATCATCTGATAGAACTTTAGATCGG 57.647 37.037 0.00 0.00 33.73 4.18
3510 4059 8.642935 ATCATCTGATAGAACTTTAGATCGGA 57.357 34.615 0.00 0.00 37.92 4.55
3511 4060 8.105097 TCATCTGATAGAACTTTAGATCGGAG 57.895 38.462 0.00 0.00 37.18 4.63
3512 4061 7.721842 TCATCTGATAGAACTTTAGATCGGAGT 59.278 37.037 0.00 0.00 37.18 3.85
3513 4062 9.004717 CATCTGATAGAACTTTAGATCGGAGTA 57.995 37.037 0.00 0.00 37.18 2.59
3514 4063 8.610248 TCTGATAGAACTTTAGATCGGAGTAG 57.390 38.462 0.20 0.00 31.56 2.57
3515 4064 7.662258 TCTGATAGAACTTTAGATCGGAGTAGG 59.338 40.741 0.20 0.00 31.56 3.18
3516 4065 4.922471 AGAACTTTAGATCGGAGTAGGC 57.078 45.455 0.20 0.00 0.00 3.93
3517 4066 4.538738 AGAACTTTAGATCGGAGTAGGCT 58.461 43.478 0.00 0.00 0.00 4.58
3518 4067 5.692928 AGAACTTTAGATCGGAGTAGGCTA 58.307 41.667 0.00 0.00 0.00 3.93
3519 4068 5.766174 AGAACTTTAGATCGGAGTAGGCTAG 59.234 44.000 0.00 0.00 0.00 3.42
3520 4069 5.051409 ACTTTAGATCGGAGTAGGCTAGT 57.949 43.478 0.36 0.36 0.00 2.57
3521 4070 6.185114 ACTTTAGATCGGAGTAGGCTAGTA 57.815 41.667 0.89 0.00 0.00 1.82
3522 4071 6.232692 ACTTTAGATCGGAGTAGGCTAGTAG 58.767 44.000 0.89 0.07 0.00 2.57
3523 4072 6.043012 ACTTTAGATCGGAGTAGGCTAGTAGA 59.957 42.308 0.89 5.73 0.00 2.59
3524 4073 6.623979 TTAGATCGGAGTAGGCTAGTAGAT 57.376 41.667 15.51 15.51 0.00 1.98
3525 4074 5.093849 AGATCGGAGTAGGCTAGTAGATC 57.906 47.826 24.99 24.99 34.98 2.75
3526 4075 3.699411 TCGGAGTAGGCTAGTAGATCC 57.301 52.381 0.89 0.00 0.00 3.36
3527 4076 2.348660 CGGAGTAGGCTAGTAGATCCG 58.651 57.143 11.41 11.41 41.80 4.18
3528 4077 2.713877 GGAGTAGGCTAGTAGATCCGG 58.286 57.143 0.89 0.00 0.00 5.14
3529 4078 2.040145 GGAGTAGGCTAGTAGATCCGGT 59.960 54.545 0.00 0.00 0.00 5.28
3530 4079 3.075884 GAGTAGGCTAGTAGATCCGGTG 58.924 54.545 0.00 0.00 0.00 4.94
3531 4080 2.709934 AGTAGGCTAGTAGATCCGGTGA 59.290 50.000 0.00 0.00 0.00 4.02
3532 4081 2.750141 AGGCTAGTAGATCCGGTGAA 57.250 50.000 0.00 0.00 0.00 3.18
3533 4082 2.308690 AGGCTAGTAGATCCGGTGAAC 58.691 52.381 0.00 0.00 0.00 3.18
3534 4083 1.340568 GGCTAGTAGATCCGGTGAACC 59.659 57.143 0.00 0.00 0.00 3.62
3535 4084 2.308690 GCTAGTAGATCCGGTGAACCT 58.691 52.381 0.00 0.00 0.00 3.50
3536 4085 3.484407 GCTAGTAGATCCGGTGAACCTA 58.516 50.000 0.00 0.00 0.00 3.08
3537 4086 3.252944 GCTAGTAGATCCGGTGAACCTAC 59.747 52.174 0.00 7.28 0.00 3.18
3538 4087 2.664015 AGTAGATCCGGTGAACCTACC 58.336 52.381 0.00 0.00 37.37 3.18
3539 4088 2.244252 AGTAGATCCGGTGAACCTACCT 59.756 50.000 0.00 0.00 38.62 3.08
3540 4089 2.249309 AGATCCGGTGAACCTACCTT 57.751 50.000 0.00 0.00 38.62 3.50
3541 4090 1.831736 AGATCCGGTGAACCTACCTTG 59.168 52.381 0.00 0.00 38.62 3.61
3542 4091 1.553704 GATCCGGTGAACCTACCTTGT 59.446 52.381 0.00 0.00 38.62 3.16
3543 4092 0.971386 TCCGGTGAACCTACCTTGTC 59.029 55.000 0.00 0.00 38.62 3.18
3544 4093 0.036671 CCGGTGAACCTACCTTGTCC 60.037 60.000 0.00 0.00 38.62 4.02
3545 4094 0.682852 CGGTGAACCTACCTTGTCCA 59.317 55.000 0.00 0.00 38.62 4.02
3546 4095 1.337823 CGGTGAACCTACCTTGTCCAG 60.338 57.143 0.00 0.00 38.62 3.86
3547 4096 1.610886 GGTGAACCTACCTTGTCCAGC 60.611 57.143 0.00 0.00 37.74 4.85
3548 4097 1.071699 GTGAACCTACCTTGTCCAGCA 59.928 52.381 0.00 0.00 0.00 4.41
3549 4098 1.347707 TGAACCTACCTTGTCCAGCAG 59.652 52.381 0.00 0.00 0.00 4.24
3550 4099 0.036875 AACCTACCTTGTCCAGCAGC 59.963 55.000 0.00 0.00 0.00 5.25
3551 4100 1.448540 CCTACCTTGTCCAGCAGCG 60.449 63.158 0.00 0.00 0.00 5.18
3552 4101 1.448540 CTACCTTGTCCAGCAGCGG 60.449 63.158 0.00 0.00 0.00 5.52
3553 4102 1.888436 CTACCTTGTCCAGCAGCGGA 61.888 60.000 0.00 0.00 0.00 5.54
3554 4103 1.264749 TACCTTGTCCAGCAGCGGAT 61.265 55.000 8.89 0.00 37.41 4.18
3555 4104 2.110967 CCTTGTCCAGCAGCGGATG 61.111 63.158 8.89 0.00 37.41 3.51
3556 4105 1.078918 CTTGTCCAGCAGCGGATGA 60.079 57.895 2.90 1.81 37.41 2.92
3557 4106 0.674581 CTTGTCCAGCAGCGGATGAA 60.675 55.000 2.90 5.36 37.41 2.57
3558 4107 0.955428 TTGTCCAGCAGCGGATGAAC 60.955 55.000 2.90 0.00 37.41 3.18
3559 4108 1.078848 GTCCAGCAGCGGATGAACT 60.079 57.895 2.90 0.00 37.41 3.01
3560 4109 1.086634 GTCCAGCAGCGGATGAACTC 61.087 60.000 2.90 0.00 37.41 3.01
3561 4110 2.169789 CCAGCAGCGGATGAACTCG 61.170 63.158 2.90 0.00 30.05 4.18
3562 4111 1.153765 CAGCAGCGGATGAACTCGA 60.154 57.895 0.00 0.00 30.05 4.04
3563 4112 1.140589 AGCAGCGGATGAACTCGAG 59.859 57.895 11.84 11.84 0.00 4.04
3564 4113 2.520904 GCAGCGGATGAACTCGAGC 61.521 63.158 13.61 0.00 0.00 5.03
3565 4114 1.880340 CAGCGGATGAACTCGAGCC 60.880 63.158 13.61 5.33 0.00 4.70
3566 4115 2.956964 GCGGATGAACTCGAGCCG 60.957 66.667 20.06 20.06 44.47 5.52
3567 4116 2.278857 CGGATGAACTCGAGCCGG 60.279 66.667 13.61 0.00 38.40 6.13
3568 4117 2.771639 CGGATGAACTCGAGCCGGA 61.772 63.158 13.61 0.00 38.40 5.14
3569 4118 1.066587 GGATGAACTCGAGCCGGAG 59.933 63.158 13.61 0.00 39.97 4.63
3581 4130 4.838152 CCGGAGGCCATCGTGGTG 62.838 72.222 5.01 0.00 46.14 4.17
3583 4132 4.101448 GGAGGCCATCGTGGTGCT 62.101 66.667 5.01 0.00 40.46 4.40
3584 4133 2.821366 GAGGCCATCGTGGTGCTG 60.821 66.667 5.01 0.00 40.46 4.41
3585 4134 4.415150 AGGCCATCGTGGTGCTGG 62.415 66.667 5.01 0.00 40.46 4.85
3605 4154 3.190849 CACACGGCGATGGCAGAG 61.191 66.667 16.62 0.98 42.47 3.35
3606 4155 3.381983 ACACGGCGATGGCAGAGA 61.382 61.111 16.62 0.00 42.47 3.10
3607 4156 2.584418 CACGGCGATGGCAGAGAG 60.584 66.667 16.62 0.00 42.47 3.20
3608 4157 3.071206 ACGGCGATGGCAGAGAGT 61.071 61.111 16.62 0.00 42.47 3.24
3609 4158 2.584418 CGGCGATGGCAGAGAGTG 60.584 66.667 0.00 0.00 42.47 3.51
3610 4159 2.202987 GGCGATGGCAGAGAGTGG 60.203 66.667 1.01 0.00 42.47 4.00
3611 4160 2.202987 GCGATGGCAGAGAGTGGG 60.203 66.667 0.00 0.00 39.62 4.61
3612 4161 2.202987 CGATGGCAGAGAGTGGGC 60.203 66.667 0.00 0.00 0.00 5.36
3613 4162 2.202987 GATGGCAGAGAGTGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
3614 4163 2.685017 ATGGCAGAGAGTGGGCGA 60.685 61.111 0.00 0.00 0.00 5.54
3615 4164 2.641439 GATGGCAGAGAGTGGGCGAG 62.641 65.000 0.00 0.00 0.00 5.03
3616 4165 4.154347 GGCAGAGAGTGGGCGAGG 62.154 72.222 0.00 0.00 0.00 4.63
3617 4166 3.386237 GCAGAGAGTGGGCGAGGT 61.386 66.667 0.00 0.00 0.00 3.85
3618 4167 2.575993 CAGAGAGTGGGCGAGGTG 59.424 66.667 0.00 0.00 0.00 4.00
3619 4168 2.681778 AGAGAGTGGGCGAGGTGG 60.682 66.667 0.00 0.00 0.00 4.61
3620 4169 2.680352 GAGAGTGGGCGAGGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
3621 4170 2.681778 AGAGTGGGCGAGGTGGAG 60.682 66.667 0.00 0.00 0.00 3.86
3622 4171 3.775654 GAGTGGGCGAGGTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
3623 4172 4.640690 AGTGGGCGAGGTGGAGGT 62.641 66.667 0.00 0.00 0.00 3.85
3624 4173 4.394712 GTGGGCGAGGTGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
3627 4176 3.775654 GGCGAGGTGGAGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
3628 4177 4.459089 GCGAGGTGGAGGTGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
3629 4178 2.681778 CGAGGTGGAGGTGGAGCT 60.682 66.667 0.00 0.00 0.00 4.09
3630 4179 2.286523 CGAGGTGGAGGTGGAGCTT 61.287 63.158 0.00 0.00 0.00 3.74
3631 4180 1.599576 GAGGTGGAGGTGGAGCTTC 59.400 63.158 0.00 0.00 0.00 3.86
3632 4181 1.904990 GAGGTGGAGGTGGAGCTTCC 61.905 65.000 0.00 0.00 43.09 3.46
3633 4182 2.671682 GTGGAGGTGGAGCTTCCC 59.328 66.667 0.00 0.00 42.20 3.97
3634 4183 3.003173 TGGAGGTGGAGCTTCCCG 61.003 66.667 0.00 0.00 42.20 5.14
3635 4184 3.003763 GGAGGTGGAGCTTCCCGT 61.004 66.667 0.00 0.00 37.38 5.28
3636 4185 2.266055 GAGGTGGAGCTTCCCGTG 59.734 66.667 0.00 0.00 35.03 4.94
3637 4186 2.203788 AGGTGGAGCTTCCCGTGA 60.204 61.111 0.00 0.00 35.03 4.35
3638 4187 2.232298 GAGGTGGAGCTTCCCGTGAG 62.232 65.000 0.00 0.00 35.03 3.51
3639 4188 2.435059 GTGGAGCTTCCCGTGAGC 60.435 66.667 0.00 0.00 40.43 4.26
3640 4189 2.922503 TGGAGCTTCCCGTGAGCA 60.923 61.111 0.00 0.00 42.56 4.26
3641 4190 2.435059 GGAGCTTCCCGTGAGCAC 60.435 66.667 0.00 0.00 42.56 4.40
3642 4191 2.435059 GAGCTTCCCGTGAGCACC 60.435 66.667 0.00 0.00 42.56 5.01
3643 4192 4.379243 AGCTTCCCGTGAGCACCG 62.379 66.667 4.99 0.00 42.56 4.94
3655 4204 2.585247 GCACCGCGCTAACCCTAG 60.585 66.667 5.56 0.00 37.77 3.02
3656 4205 3.072486 GCACCGCGCTAACCCTAGA 62.072 63.158 5.56 0.00 37.77 2.43
3657 4206 1.740285 CACCGCGCTAACCCTAGAT 59.260 57.895 5.56 0.00 0.00 1.98
3658 4207 0.318784 CACCGCGCTAACCCTAGATC 60.319 60.000 5.56 0.00 0.00 2.75
3659 4208 1.081376 CCGCGCTAACCCTAGATCG 60.081 63.158 5.56 0.00 0.00 3.69
3660 4209 1.081376 CGCGCTAACCCTAGATCGG 60.081 63.158 5.56 0.00 0.00 4.18
3661 4210 1.793134 CGCGCTAACCCTAGATCGGT 61.793 60.000 5.56 0.00 34.07 4.69
3662 4211 1.242076 GCGCTAACCCTAGATCGGTA 58.758 55.000 0.00 0.00 31.69 4.02
3663 4212 1.199558 GCGCTAACCCTAGATCGGTAG 59.800 57.143 0.00 0.00 31.69 3.18
3664 4213 1.811359 CGCTAACCCTAGATCGGTAGG 59.189 57.143 1.73 1.73 39.62 3.18
3673 4222 4.304048 CTAGATCGGTAGGGATGTAGGT 57.696 50.000 0.00 0.00 36.91 3.08
3674 4223 2.877866 AGATCGGTAGGGATGTAGGTG 58.122 52.381 0.00 0.00 0.00 4.00
3675 4224 1.893801 GATCGGTAGGGATGTAGGTGG 59.106 57.143 0.00 0.00 0.00 4.61
3676 4225 0.105862 TCGGTAGGGATGTAGGTGGG 60.106 60.000 0.00 0.00 0.00 4.61
3677 4226 1.119574 CGGTAGGGATGTAGGTGGGG 61.120 65.000 0.00 0.00 0.00 4.96
3678 4227 0.030399 GGTAGGGATGTAGGTGGGGT 60.030 60.000 0.00 0.00 0.00 4.95
3679 4228 1.627195 GGTAGGGATGTAGGTGGGGTT 60.627 57.143 0.00 0.00 0.00 4.11
3680 4229 2.202707 GTAGGGATGTAGGTGGGGTTT 58.797 52.381 0.00 0.00 0.00 3.27
3681 4230 0.999712 AGGGATGTAGGTGGGGTTTG 59.000 55.000 0.00 0.00 0.00 2.93
3682 4231 0.702316 GGGATGTAGGTGGGGTTTGT 59.298 55.000 0.00 0.00 0.00 2.83
3683 4232 1.615919 GGGATGTAGGTGGGGTTTGTG 60.616 57.143 0.00 0.00 0.00 3.33
3684 4233 1.615919 GGATGTAGGTGGGGTTTGTGG 60.616 57.143 0.00 0.00 0.00 4.17
3685 4234 0.251608 ATGTAGGTGGGGTTTGTGGC 60.252 55.000 0.00 0.00 0.00 5.01
3686 4235 1.151908 GTAGGTGGGGTTTGTGGCA 59.848 57.895 0.00 0.00 0.00 4.92
3687 4236 0.893727 GTAGGTGGGGTTTGTGGCAG 60.894 60.000 0.00 0.00 0.00 4.85
3688 4237 2.706952 TAGGTGGGGTTTGTGGCAGC 62.707 60.000 0.00 0.00 0.00 5.25
3689 4238 3.977244 GTGGGGTTTGTGGCAGCG 61.977 66.667 0.00 0.00 0.00 5.18
3690 4239 4.196778 TGGGGTTTGTGGCAGCGA 62.197 61.111 0.00 0.00 0.00 4.93
3691 4240 2.676471 GGGGTTTGTGGCAGCGAT 60.676 61.111 0.00 0.00 0.00 4.58
3692 4241 2.275380 GGGGTTTGTGGCAGCGATT 61.275 57.895 0.00 0.00 0.00 3.34
3693 4242 0.963355 GGGGTTTGTGGCAGCGATTA 60.963 55.000 0.00 0.00 0.00 1.75
3694 4243 0.885196 GGGTTTGTGGCAGCGATTAA 59.115 50.000 0.00 0.00 0.00 1.40
3695 4244 1.402325 GGGTTTGTGGCAGCGATTAAC 60.402 52.381 0.00 0.00 0.00 2.01
3696 4245 1.402325 GGTTTGTGGCAGCGATTAACC 60.402 52.381 7.55 7.55 0.00 2.85
3697 4246 1.539827 GTTTGTGGCAGCGATTAACCT 59.460 47.619 0.00 0.00 0.00 3.50
3698 4247 1.448985 TTGTGGCAGCGATTAACCTC 58.551 50.000 0.00 0.00 0.00 3.85
3699 4248 0.739462 TGTGGCAGCGATTAACCTCG 60.739 55.000 0.00 0.00 41.54 4.63
3700 4249 0.739813 GTGGCAGCGATTAACCTCGT 60.740 55.000 0.00 0.00 40.73 4.18
3701 4250 0.739462 TGGCAGCGATTAACCTCGTG 60.739 55.000 0.86 0.32 40.73 4.35
3702 4251 0.459585 GGCAGCGATTAACCTCGTGA 60.460 55.000 0.86 0.00 40.73 4.35
3703 4252 0.924090 GCAGCGATTAACCTCGTGAG 59.076 55.000 0.86 0.00 40.73 3.51
3704 4253 1.736032 GCAGCGATTAACCTCGTGAGT 60.736 52.381 0.86 0.00 40.73 3.41
3705 4254 2.186076 CAGCGATTAACCTCGTGAGTC 58.814 52.381 0.86 0.00 40.73 3.36
3706 4255 1.189403 GCGATTAACCTCGTGAGTCG 58.811 55.000 0.86 3.34 40.73 4.18
3707 4256 1.467035 GCGATTAACCTCGTGAGTCGT 60.467 52.381 8.12 0.00 40.73 4.34
3708 4257 2.174764 CGATTAACCTCGTGAGTCGTG 58.825 52.381 0.00 0.00 40.80 4.35
3709 4258 1.918609 GATTAACCTCGTGAGTCGTGC 59.081 52.381 0.00 0.00 40.80 5.34
3710 4259 0.038892 TTAACCTCGTGAGTCGTGCC 60.039 55.000 0.00 0.00 40.80 5.01
3711 4260 1.870055 TAACCTCGTGAGTCGTGCCC 61.870 60.000 0.00 0.00 40.80 5.36
3712 4261 4.436998 CCTCGTGAGTCGTGCCCC 62.437 72.222 0.00 0.00 40.80 5.80
3713 4262 4.778415 CTCGTGAGTCGTGCCCCG 62.778 72.222 0.00 0.00 40.80 5.73
3729 4278 3.966543 CGGCCCCCACCTCTGTTT 61.967 66.667 0.00 0.00 0.00 2.83
3730 4279 2.598787 CGGCCCCCACCTCTGTTTA 61.599 63.158 0.00 0.00 0.00 2.01
3731 4280 1.921869 CGGCCCCCACCTCTGTTTAT 61.922 60.000 0.00 0.00 0.00 1.40
3732 4281 1.218844 GGCCCCCACCTCTGTTTATA 58.781 55.000 0.00 0.00 0.00 0.98
3733 4282 1.780919 GGCCCCCACCTCTGTTTATAT 59.219 52.381 0.00 0.00 0.00 0.86
3734 4283 2.983898 GGCCCCCACCTCTGTTTATATA 59.016 50.000 0.00 0.00 0.00 0.86
3735 4284 3.009143 GGCCCCCACCTCTGTTTATATAG 59.991 52.174 0.00 0.00 0.00 1.31
3736 4285 3.559384 GCCCCCACCTCTGTTTATATAGC 60.559 52.174 0.00 0.00 0.00 2.97
3737 4286 3.306780 CCCCCACCTCTGTTTATATAGCG 60.307 52.174 0.00 0.00 0.00 4.26
3738 4287 3.326747 CCCACCTCTGTTTATATAGCGC 58.673 50.000 0.00 0.00 0.00 5.92
3739 4288 2.987149 CCACCTCTGTTTATATAGCGCG 59.013 50.000 0.00 0.00 0.00 6.86
3740 4289 2.987149 CACCTCTGTTTATATAGCGCGG 59.013 50.000 8.83 0.00 0.00 6.46
3741 4290 2.029290 ACCTCTGTTTATATAGCGCGGG 60.029 50.000 8.83 0.00 0.00 6.13
3742 4291 2.029290 CCTCTGTTTATATAGCGCGGGT 60.029 50.000 8.83 0.00 0.00 5.28
3743 4292 3.243336 CTCTGTTTATATAGCGCGGGTC 58.757 50.000 8.83 0.00 0.00 4.46
3744 4293 2.624364 TCTGTTTATATAGCGCGGGTCA 59.376 45.455 8.83 0.00 0.00 4.02
3745 4294 2.729882 CTGTTTATATAGCGCGGGTCAC 59.270 50.000 8.83 0.00 0.00 3.67
3746 4295 2.101082 TGTTTATATAGCGCGGGTCACA 59.899 45.455 8.83 0.00 0.00 3.58
3747 4296 2.717580 TTATATAGCGCGGGTCACAG 57.282 50.000 8.83 0.00 0.00 3.66
3748 4297 0.885879 TATATAGCGCGGGTCACAGG 59.114 55.000 8.83 0.00 0.00 4.00
3749 4298 1.816863 ATATAGCGCGGGTCACAGGG 61.817 60.000 8.83 0.00 0.00 4.45
3758 4307 3.897122 GTCACAGGGGCCCACCAA 61.897 66.667 27.72 4.22 42.91 3.67
3759 4308 3.897122 TCACAGGGGCCCACCAAC 61.897 66.667 27.72 5.28 42.91 3.77
3760 4309 4.994756 CACAGGGGCCCACCAACC 62.995 72.222 27.72 4.38 42.91 3.77
3762 4311 3.996621 CAGGGGCCCACCAACCAT 61.997 66.667 27.72 0.00 42.91 3.55
3763 4312 3.996621 AGGGGCCCACCAACCATG 61.997 66.667 27.72 0.00 42.91 3.66
3776 4325 2.656055 CCATGGTTTGGTTGGGCG 59.344 61.111 2.57 0.00 40.99 6.13
3777 4326 2.206536 CCATGGTTTGGTTGGGCGT 61.207 57.895 2.57 0.00 40.99 5.68
3778 4327 1.288752 CATGGTTTGGTTGGGCGTC 59.711 57.895 0.00 0.00 0.00 5.19
3779 4328 1.906333 ATGGTTTGGTTGGGCGTCC 60.906 57.895 0.00 0.00 0.00 4.79
3780 4329 3.299977 GGTTTGGTTGGGCGTCCC 61.300 66.667 2.12 5.67 45.71 4.46
3797 4346 4.933064 CCGATCAGGGCGCGAGTC 62.933 72.222 12.10 0.00 35.97 3.36
3798 4347 4.193334 CGATCAGGGCGCGAGTCA 62.193 66.667 12.10 0.00 37.54 3.41
3799 4348 2.184322 GATCAGGGCGCGAGTCAA 59.816 61.111 12.10 0.00 37.54 3.18
3800 4349 1.880340 GATCAGGGCGCGAGTCAAG 60.880 63.158 12.10 0.00 37.54 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.624452 ACTAGAACGTGAATTTTAGGTCGC 59.376 41.667 0.00 0.00 0.00 5.19
77 78 6.070938 AGGCTACTAGAACGTGAATTTTAGGT 60.071 38.462 0.00 0.00 0.00 3.08
87 88 4.171754 GTGGTTTAGGCTACTAGAACGTG 58.828 47.826 0.00 0.00 0.00 4.49
88 89 3.119708 CGTGGTTTAGGCTACTAGAACGT 60.120 47.826 0.00 0.00 0.00 3.99
110 111 6.490566 TCGCTAAAATAGGGAACTGAAAAC 57.509 37.500 2.09 0.00 43.62 2.43
215 216 1.672356 GCACCGATGCCAAGTCACT 60.672 57.895 0.00 0.00 46.97 3.41
228 229 3.829886 TTCTAGAAAATGCAAGCACCG 57.170 42.857 1.68 0.00 0.00 4.94
259 260 4.273480 CACTGAATGAACTTCACCGAAAGT 59.727 41.667 0.00 0.00 38.97 2.66
296 297 1.202348 ACAGACGCTCATTGTCGATGA 59.798 47.619 2.68 2.68 42.42 2.92
333 334 1.271108 TGAGCCGGCACAACATCTTAA 60.271 47.619 31.54 0.00 0.00 1.85
373 374 3.081133 CACACACGCGCATCCTAC 58.919 61.111 5.73 0.00 0.00 3.18
381 382 0.026674 CCTATGAATGCACACACGCG 59.973 55.000 3.53 3.53 33.35 6.01
386 387 7.442364 ACATACACTTATCCTATGAATGCACAC 59.558 37.037 0.00 0.00 0.00 3.82
401 402 7.331026 ACTCACATACAAGCACATACACTTAT 58.669 34.615 0.00 0.00 0.00 1.73
410 411 7.346751 TCATAGATACTCACATACAAGCACA 57.653 36.000 0.00 0.00 0.00 4.57
455 456 2.472909 GCTCGAAAAGGCCATCCGG 61.473 63.158 5.01 0.00 37.47 5.14
471 472 6.424812 GGTGCATTCTGTTATTTTTCTTTGCT 59.575 34.615 0.00 0.00 0.00 3.91
472 473 6.202570 TGGTGCATTCTGTTATTTTTCTTTGC 59.797 34.615 0.00 0.00 0.00 3.68
483 484 3.616956 CCTCTCTGGTGCATTCTGTTA 57.383 47.619 0.00 0.00 0.00 2.41
520 521 3.118847 TGAGTCAAACTGGCAAAAATGCA 60.119 39.130 2.97 0.00 36.33 3.96
738 769 3.869272 CTCGAACCATGCAGCGGC 61.869 66.667 0.31 0.31 41.68 6.53
864 895 6.182507 AGAAATAAGCCCGGTATTGATACA 57.817 37.500 0.00 0.00 34.98 2.29
867 898 5.535030 GGAAAGAAATAAGCCCGGTATTGAT 59.465 40.000 0.00 0.00 0.00 2.57
870 901 4.212716 GGGAAAGAAATAAGCCCGGTATT 58.787 43.478 0.00 0.00 0.00 1.89
872 903 2.577105 TGGGAAAGAAATAAGCCCGGTA 59.423 45.455 0.00 0.00 41.79 4.02
924 955 8.697507 AATGGTGATAAATAATGAAGGAGACC 57.302 34.615 0.00 0.00 0.00 3.85
929 960 8.408043 TGGCTAATGGTGATAAATAATGAAGG 57.592 34.615 0.00 0.00 0.00 3.46
939 970 7.833682 TGAGAAAGAAATGGCTAATGGTGATAA 59.166 33.333 0.00 0.00 0.00 1.75
945 976 6.320672 ACAGATGAGAAAGAAATGGCTAATGG 59.679 38.462 0.00 0.00 0.00 3.16
989 1020 4.433544 CGAGCTTCTTCATGTCTTTTCGTC 60.434 45.833 0.00 0.00 0.00 4.20
995 1027 2.072298 GTGCGAGCTTCTTCATGTCTT 58.928 47.619 0.00 0.00 0.00 3.01
1064 1096 3.192844 GTGAGATGTCTCGGGTGTAAAGA 59.807 47.826 5.62 0.00 45.72 2.52
1134 1166 2.678934 AAGTCGCCTCGGCCAGTA 60.679 61.111 2.24 0.00 37.98 2.74
1240 1272 5.803967 GGAACAAATGAAAGATGCACAGATC 59.196 40.000 0.00 0.00 0.00 2.75
1241 1273 5.244402 TGGAACAAATGAAAGATGCACAGAT 59.756 36.000 0.00 0.00 31.92 2.90
1398 1473 2.685380 CTCCCCTCGCCTTCCAGT 60.685 66.667 0.00 0.00 0.00 4.00
1878 2026 0.516439 CATGCATGCGTACACACACA 59.484 50.000 14.93 0.00 0.00 3.72
2268 2420 7.576861 TTTTCTTAAGAAATTCCGGAAGTGT 57.423 32.000 26.90 9.90 42.83 3.55
2365 2518 6.182507 ACCTGAGTGTACAAATGGAACTAA 57.817 37.500 0.00 0.00 0.00 2.24
2439 2595 2.165845 AGGGAGCACGTGTAGACATTAC 59.834 50.000 18.38 0.00 0.00 1.89
2465 2621 7.306632 CGCATGGCTAAGTAACTAATACAGTTC 60.307 40.741 0.00 0.00 44.48 3.01
2470 2626 7.411588 GCATACGCATGGCTAAGTAACTAATAC 60.412 40.741 0.00 0.00 38.36 1.89
2471 2627 6.588756 GCATACGCATGGCTAAGTAACTAATA 59.411 38.462 0.00 0.00 38.36 0.98
2472 2628 5.408604 GCATACGCATGGCTAAGTAACTAAT 59.591 40.000 0.00 0.00 38.36 1.73
2473 2629 4.748102 GCATACGCATGGCTAAGTAACTAA 59.252 41.667 0.00 0.00 38.36 2.24
2474 2630 4.202172 TGCATACGCATGGCTAAGTAACTA 60.202 41.667 0.00 0.00 45.36 2.24
2475 2631 3.131396 GCATACGCATGGCTAAGTAACT 58.869 45.455 0.00 0.00 38.36 2.24
2476 2632 2.869801 TGCATACGCATGGCTAAGTAAC 59.130 45.455 0.00 0.00 45.36 2.50
2524 3004 6.725834 ACACAATCCTGGGTCAAGAAAATATT 59.274 34.615 0.00 0.00 31.81 1.28
2537 3017 1.171308 CAGAAGCACACAATCCTGGG 58.829 55.000 0.00 0.00 0.00 4.45
2575 3055 7.448228 CAACAGTTTAACTACATGATCGACAG 58.552 38.462 0.00 0.00 0.00 3.51
2732 3212 5.163953 ACAAGTTGACGAATCTAGCGATTTG 60.164 40.000 10.54 0.00 43.68 2.32
2751 3231 2.025226 TCGGGAGAGATGTAGGACAAGT 60.025 50.000 0.00 0.00 0.00 3.16
2871 3357 3.385193 TGGGTGATACATGCATCGTAG 57.615 47.619 0.00 0.00 0.00 3.51
2872 3358 3.323403 TCATGGGTGATACATGCATCGTA 59.677 43.478 0.00 3.79 44.07 3.43
2873 3359 2.104622 TCATGGGTGATACATGCATCGT 59.895 45.455 0.00 1.32 44.07 3.73
2874 3360 2.481568 GTCATGGGTGATACATGCATCG 59.518 50.000 0.00 0.00 44.07 3.84
2895 3381 0.165295 CACGCAGAGTGCATCAGTTG 59.835 55.000 0.00 0.00 45.36 3.16
2938 3424 9.136323 GATGAGATAATTAAACACCCCTTCAAT 57.864 33.333 0.00 0.00 0.00 2.57
2940 3426 7.638444 TGATGAGATAATTAAACACCCCTTCA 58.362 34.615 0.00 0.00 0.00 3.02
2941 3427 8.571336 CATGATGAGATAATTAAACACCCCTTC 58.429 37.037 0.00 0.00 0.00 3.46
2943 3429 7.006509 CCATGATGAGATAATTAAACACCCCT 58.993 38.462 0.00 0.00 0.00 4.79
2945 3431 8.463930 TTCCATGATGAGATAATTAAACACCC 57.536 34.615 0.00 0.00 0.00 4.61
2968 3454 6.147985 GCGGGAGAAAGGTAATTGATCTATTC 59.852 42.308 5.63 0.00 0.00 1.75
2972 3458 3.456277 AGCGGGAGAAAGGTAATTGATCT 59.544 43.478 0.00 0.00 0.00 2.75
2977 3463 5.206587 TCTAGTAGCGGGAGAAAGGTAATT 58.793 41.667 0.00 0.00 0.00 1.40
3023 3509 9.108284 CATTTTCAGGTTGTTCCTTGTATTTTT 57.892 29.630 0.00 0.00 45.67 1.94
3107 3655 3.278574 TGGGATCAAAGCATTCCTTACG 58.721 45.455 0.00 0.00 32.20 3.18
3143 3692 4.286032 AGCCATGTGGTCAAAGTTCTAGTA 59.714 41.667 0.35 0.00 37.57 1.82
3144 3693 3.073062 AGCCATGTGGTCAAAGTTCTAGT 59.927 43.478 0.35 0.00 37.57 2.57
3145 3694 3.438087 CAGCCATGTGGTCAAAGTTCTAG 59.562 47.826 0.35 0.00 37.57 2.43
3195 3744 2.363306 TTCAGCCCAGCAAGAGAAAA 57.637 45.000 0.00 0.00 0.00 2.29
3196 3745 2.363306 TTTCAGCCCAGCAAGAGAAA 57.637 45.000 0.00 0.00 0.00 2.52
3218 3767 8.884124 TTCATACTCAATCTTTCCCTGAAAAT 57.116 30.769 0.00 0.00 30.84 1.82
3295 3844 9.507280 CATGTGAATATGTGTCCTTTAAATCAC 57.493 33.333 9.74 9.74 35.30 3.06
3300 3849 6.658816 AGTGCATGTGAATATGTGTCCTTTAA 59.341 34.615 0.00 0.00 0.00 1.52
3301 3850 6.179756 AGTGCATGTGAATATGTGTCCTTTA 58.820 36.000 0.00 0.00 0.00 1.85
3306 3855 5.118990 ACCTAGTGCATGTGAATATGTGTC 58.881 41.667 0.00 0.00 0.00 3.67
3307 3856 5.102953 ACCTAGTGCATGTGAATATGTGT 57.897 39.130 0.00 0.00 0.00 3.72
3324 3873 2.213499 CAAGCCGCATTTCCTACCTAG 58.787 52.381 0.00 0.00 0.00 3.02
3325 3874 1.745827 GCAAGCCGCATTTCCTACCTA 60.746 52.381 0.00 0.00 41.79 3.08
3326 3875 1.032114 GCAAGCCGCATTTCCTACCT 61.032 55.000 0.00 0.00 41.79 3.08
3327 3876 1.433471 GCAAGCCGCATTTCCTACC 59.567 57.895 0.00 0.00 41.79 3.18
3328 3877 1.433471 GGCAAGCCGCATTTCCTAC 59.567 57.895 0.00 0.00 45.17 3.18
3329 3878 3.918544 GGCAAGCCGCATTTCCTA 58.081 55.556 0.00 0.00 45.17 2.94
3358 3907 2.434884 CTGTACCCGGCAGCAGTG 60.435 66.667 0.00 0.00 0.00 3.66
3363 3912 0.320771 GATATGGCTGTACCCGGCAG 60.321 60.000 12.74 0.00 45.29 4.85
3364 3913 1.752198 GATATGGCTGTACCCGGCA 59.248 57.895 10.24 10.24 45.29 5.69
3365 3914 1.003718 GGATATGGCTGTACCCGGC 60.004 63.158 0.00 0.00 42.59 6.13
3366 3915 0.984230 ATGGATATGGCTGTACCCGG 59.016 55.000 0.00 0.00 37.83 5.73
3367 3916 1.623311 TGATGGATATGGCTGTACCCG 59.377 52.381 0.00 0.00 37.83 5.28
3368 3917 2.639839 AGTGATGGATATGGCTGTACCC 59.360 50.000 0.00 0.00 37.83 3.69
3369 3918 3.668447 CAGTGATGGATATGGCTGTACC 58.332 50.000 0.00 0.00 39.84 3.34
3370 3919 3.070018 GCAGTGATGGATATGGCTGTAC 58.930 50.000 0.00 0.00 0.00 2.90
3371 3920 2.974794 AGCAGTGATGGATATGGCTGTA 59.025 45.455 0.00 0.00 0.00 2.74
3372 3921 1.773052 AGCAGTGATGGATATGGCTGT 59.227 47.619 0.00 0.00 0.00 4.40
3373 3922 2.152016 CAGCAGTGATGGATATGGCTG 58.848 52.381 0.00 0.00 40.88 4.85
3374 3923 1.073444 CCAGCAGTGATGGATATGGCT 59.927 52.381 23.28 0.00 42.34 4.75
3375 3924 1.531423 CCAGCAGTGATGGATATGGC 58.469 55.000 23.28 0.00 42.34 4.40
3376 3925 1.422781 ACCCAGCAGTGATGGATATGG 59.577 52.381 28.89 13.64 42.34 2.74
3377 3926 2.945080 ACCCAGCAGTGATGGATATG 57.055 50.000 28.89 14.03 42.34 1.78
3378 3927 5.387113 TTTTACCCAGCAGTGATGGATAT 57.613 39.130 28.89 15.41 42.34 1.63
3379 3928 4.853468 TTTTACCCAGCAGTGATGGATA 57.147 40.909 28.89 14.10 42.34 2.59
3380 3929 3.737559 TTTTACCCAGCAGTGATGGAT 57.262 42.857 28.89 15.39 42.34 3.41
3381 3930 3.010027 TGATTTTACCCAGCAGTGATGGA 59.990 43.478 28.89 8.69 42.34 3.41
3382 3931 3.129287 GTGATTTTACCCAGCAGTGATGG 59.871 47.826 20.85 20.85 39.04 3.51
3383 3932 3.758023 TGTGATTTTACCCAGCAGTGATG 59.242 43.478 0.08 0.08 0.00 3.07
3384 3933 4.032960 TGTGATTTTACCCAGCAGTGAT 57.967 40.909 0.00 0.00 0.00 3.06
3385 3934 3.500448 TGTGATTTTACCCAGCAGTGA 57.500 42.857 0.00 0.00 0.00 3.41
3386 3935 3.129287 GGATGTGATTTTACCCAGCAGTG 59.871 47.826 0.00 0.00 0.00 3.66
3387 3936 3.245229 TGGATGTGATTTTACCCAGCAGT 60.245 43.478 0.00 0.00 0.00 4.40
3388 3937 3.355378 TGGATGTGATTTTACCCAGCAG 58.645 45.455 0.00 0.00 0.00 4.24
3389 3938 3.448093 TGGATGTGATTTTACCCAGCA 57.552 42.857 0.00 0.00 0.00 4.41
3390 3939 4.202151 GGATTGGATGTGATTTTACCCAGC 60.202 45.833 0.00 0.00 0.00 4.85
3391 3940 5.068198 CAGGATTGGATGTGATTTTACCCAG 59.932 44.000 0.00 0.00 0.00 4.45
3392 3941 4.955450 CAGGATTGGATGTGATTTTACCCA 59.045 41.667 0.00 0.00 0.00 4.51
3393 3942 4.956075 ACAGGATTGGATGTGATTTTACCC 59.044 41.667 0.00 0.00 0.00 3.69
3394 3943 7.639113 TTACAGGATTGGATGTGATTTTACC 57.361 36.000 0.00 0.00 0.00 2.85
3396 3945 9.913310 TGTATTACAGGATTGGATGTGATTTTA 57.087 29.630 0.00 0.00 29.56 1.52
3397 3946 8.821686 TGTATTACAGGATTGGATGTGATTTT 57.178 30.769 0.00 0.00 29.56 1.82
3398 3947 8.686334 GTTGTATTACAGGATTGGATGTGATTT 58.314 33.333 0.00 0.00 29.56 2.17
3399 3948 7.285401 GGTTGTATTACAGGATTGGATGTGATT 59.715 37.037 0.00 0.00 29.56 2.57
3400 3949 6.772716 GGTTGTATTACAGGATTGGATGTGAT 59.227 38.462 0.00 0.00 31.44 3.06
3401 3950 6.119536 GGTTGTATTACAGGATTGGATGTGA 58.880 40.000 0.00 0.00 0.00 3.58
3402 3951 5.885352 TGGTTGTATTACAGGATTGGATGTG 59.115 40.000 0.00 0.00 0.00 3.21
3403 3952 6.073447 TGGTTGTATTACAGGATTGGATGT 57.927 37.500 0.00 0.00 0.00 3.06
3404 3953 7.428020 CAATGGTTGTATTACAGGATTGGATG 58.572 38.462 12.38 0.00 0.00 3.51
3405 3954 6.550854 CCAATGGTTGTATTACAGGATTGGAT 59.449 38.462 23.44 3.12 39.62 3.41
3406 3955 5.890985 CCAATGGTTGTATTACAGGATTGGA 59.109 40.000 23.44 0.00 39.62 3.53
3407 3956 5.890985 TCCAATGGTTGTATTACAGGATTGG 59.109 40.000 22.66 22.66 39.15 3.16
3408 3957 6.460123 GCTCCAATGGTTGTATTACAGGATTG 60.460 42.308 0.00 12.87 0.00 2.67
3409 3958 5.594317 GCTCCAATGGTTGTATTACAGGATT 59.406 40.000 0.00 0.00 0.00 3.01
3410 3959 5.133221 GCTCCAATGGTTGTATTACAGGAT 58.867 41.667 0.00 0.00 0.00 3.24
3411 3960 4.018870 TGCTCCAATGGTTGTATTACAGGA 60.019 41.667 0.00 0.00 0.00 3.86
3412 3961 4.269183 TGCTCCAATGGTTGTATTACAGG 58.731 43.478 0.00 0.00 0.00 4.00
3413 3962 6.267817 CAATGCTCCAATGGTTGTATTACAG 58.732 40.000 0.00 0.00 0.00 2.74
3414 3963 5.394005 GCAATGCTCCAATGGTTGTATTACA 60.394 40.000 0.00 0.00 0.00 2.41
3415 3964 5.043248 GCAATGCTCCAATGGTTGTATTAC 58.957 41.667 0.00 0.00 0.00 1.89
3416 3965 4.708909 TGCAATGCTCCAATGGTTGTATTA 59.291 37.500 6.82 0.00 0.00 0.98
3417 3966 3.514706 TGCAATGCTCCAATGGTTGTATT 59.485 39.130 6.82 2.64 0.00 1.89
3418 3967 3.098377 TGCAATGCTCCAATGGTTGTAT 58.902 40.909 6.82 0.00 0.00 2.29
3419 3968 2.523245 TGCAATGCTCCAATGGTTGTA 58.477 42.857 6.82 0.00 0.00 2.41
3420 3969 1.340088 TGCAATGCTCCAATGGTTGT 58.660 45.000 6.82 0.00 0.00 3.32
3421 3970 2.459060 TTGCAATGCTCCAATGGTTG 57.541 45.000 6.82 0.00 0.00 3.77
3422 3971 3.706600 ATTTGCAATGCTCCAATGGTT 57.293 38.095 6.82 0.00 0.00 3.67
3423 3972 6.482898 TTATATTTGCAATGCTCCAATGGT 57.517 33.333 6.82 0.00 0.00 3.55
3424 3973 7.789273 TTTTATATTTGCAATGCTCCAATGG 57.211 32.000 6.82 0.00 0.00 3.16
3449 3998 9.569122 ACACTGTACTGAACCAATATTAAGTTT 57.431 29.630 6.77 0.00 0.00 2.66
3450 3999 9.216117 GACACTGTACTGAACCAATATTAAGTT 57.784 33.333 6.77 3.36 0.00 2.66
3451 4000 8.372459 TGACACTGTACTGAACCAATATTAAGT 58.628 33.333 6.77 0.00 0.00 2.24
3452 4001 8.771920 TGACACTGTACTGAACCAATATTAAG 57.228 34.615 6.77 0.00 0.00 1.85
3454 4003 9.811995 GTATGACACTGTACTGAACCAATATTA 57.188 33.333 6.77 0.00 0.00 0.98
3455 4004 8.318412 TGTATGACACTGTACTGAACCAATATT 58.682 33.333 6.77 0.00 0.00 1.28
3456 4005 7.764443 GTGTATGACACTGTACTGAACCAATAT 59.236 37.037 6.77 0.00 45.27 1.28
3457 4006 7.094631 GTGTATGACACTGTACTGAACCAATA 58.905 38.462 6.77 0.00 45.27 1.90
3458 4007 5.932303 GTGTATGACACTGTACTGAACCAAT 59.068 40.000 6.77 0.00 45.27 3.16
3459 4008 5.294356 GTGTATGACACTGTACTGAACCAA 58.706 41.667 6.77 0.00 45.27 3.67
3460 4009 4.557895 CGTGTATGACACTGTACTGAACCA 60.558 45.833 6.77 1.69 46.46 3.67
3461 4010 3.918591 CGTGTATGACACTGTACTGAACC 59.081 47.826 6.77 0.00 46.46 3.62
3462 4011 4.790878 TCGTGTATGACACTGTACTGAAC 58.209 43.478 6.77 0.00 46.46 3.18
3463 4012 5.441709 TTCGTGTATGACACTGTACTGAA 57.558 39.130 6.77 0.92 46.46 3.02
3464 4013 5.182380 TGATTCGTGTATGACACTGTACTGA 59.818 40.000 6.77 0.00 46.46 3.41
3465 4014 5.399013 TGATTCGTGTATGACACTGTACTG 58.601 41.667 8.04 0.00 46.46 2.74
3466 4015 5.638596 TGATTCGTGTATGACACTGTACT 57.361 39.130 8.04 0.00 46.46 2.73
3467 4016 6.197282 CAGATGATTCGTGTATGACACTGTAC 59.803 42.308 8.04 0.00 46.46 2.90
3468 4017 6.094881 TCAGATGATTCGTGTATGACACTGTA 59.905 38.462 8.04 0.00 46.46 2.74
3469 4018 5.105063 CAGATGATTCGTGTATGACACTGT 58.895 41.667 8.04 0.00 46.46 3.55
3470 4019 5.343249 TCAGATGATTCGTGTATGACACTG 58.657 41.667 8.04 0.00 46.46 3.66
3471 4020 5.582689 TCAGATGATTCGTGTATGACACT 57.417 39.130 8.04 0.00 46.46 3.55
3472 4021 7.363431 TCTATCAGATGATTCGTGTATGACAC 58.637 38.462 0.00 0.00 39.44 3.67
3473 4022 7.510549 TCTATCAGATGATTCGTGTATGACA 57.489 36.000 0.00 0.00 36.05 3.58
3474 4023 8.079203 AGTTCTATCAGATGATTCGTGTATGAC 58.921 37.037 0.00 0.00 36.05 3.06
3475 4024 8.171164 AGTTCTATCAGATGATTCGTGTATGA 57.829 34.615 0.00 0.00 36.05 2.15
3476 4025 8.809159 AAGTTCTATCAGATGATTCGTGTATG 57.191 34.615 0.00 0.00 36.05 2.39
3478 4027 9.952188 CTAAAGTTCTATCAGATGATTCGTGTA 57.048 33.333 0.00 0.00 36.05 2.90
3479 4028 8.687242 TCTAAAGTTCTATCAGATGATTCGTGT 58.313 33.333 0.00 0.00 36.05 4.49
3480 4029 9.689976 ATCTAAAGTTCTATCAGATGATTCGTG 57.310 33.333 0.00 0.00 36.05 4.35
3481 4030 9.906660 GATCTAAAGTTCTATCAGATGATTCGT 57.093 33.333 0.00 0.00 36.05 3.85
3482 4031 9.060547 CGATCTAAAGTTCTATCAGATGATTCG 57.939 37.037 0.00 0.00 36.05 3.34
3483 4032 9.352784 CCGATCTAAAGTTCTATCAGATGATTC 57.647 37.037 0.00 0.00 36.05 2.52
3484 4033 9.083422 TCCGATCTAAAGTTCTATCAGATGATT 57.917 33.333 0.00 0.00 36.05 2.57
3485 4034 8.642935 TCCGATCTAAAGTTCTATCAGATGAT 57.357 34.615 0.31 0.31 38.51 2.45
3486 4035 7.721842 ACTCCGATCTAAAGTTCTATCAGATGA 59.278 37.037 0.00 0.00 0.00 2.92
3487 4036 7.881142 ACTCCGATCTAAAGTTCTATCAGATG 58.119 38.462 0.00 0.00 0.00 2.90
3488 4037 9.226606 CTACTCCGATCTAAAGTTCTATCAGAT 57.773 37.037 0.00 0.00 0.00 2.90
3489 4038 7.662258 CCTACTCCGATCTAAAGTTCTATCAGA 59.338 40.741 0.00 0.00 0.00 3.27
3490 4039 7.574217 GCCTACTCCGATCTAAAGTTCTATCAG 60.574 44.444 0.00 0.00 0.00 2.90
3491 4040 6.207025 GCCTACTCCGATCTAAAGTTCTATCA 59.793 42.308 0.00 0.00 0.00 2.15
3492 4041 6.431852 AGCCTACTCCGATCTAAAGTTCTATC 59.568 42.308 0.00 0.00 0.00 2.08
3493 4042 6.308566 AGCCTACTCCGATCTAAAGTTCTAT 58.691 40.000 0.00 0.00 0.00 1.98
3494 4043 5.692928 AGCCTACTCCGATCTAAAGTTCTA 58.307 41.667 0.00 0.00 0.00 2.10
3495 4044 4.538738 AGCCTACTCCGATCTAAAGTTCT 58.461 43.478 0.00 0.00 0.00 3.01
3496 4045 4.922471 AGCCTACTCCGATCTAAAGTTC 57.078 45.455 0.00 0.00 0.00 3.01
3497 4046 5.447757 ACTAGCCTACTCCGATCTAAAGTT 58.552 41.667 0.00 0.00 0.00 2.66
3498 4047 5.051409 ACTAGCCTACTCCGATCTAAAGT 57.949 43.478 0.00 0.00 0.00 2.66
3499 4048 6.465948 TCTACTAGCCTACTCCGATCTAAAG 58.534 44.000 0.00 0.00 0.00 1.85
3500 4049 6.430962 TCTACTAGCCTACTCCGATCTAAA 57.569 41.667 0.00 0.00 0.00 1.85
3501 4050 6.352051 GGATCTACTAGCCTACTCCGATCTAA 60.352 46.154 0.00 0.00 0.00 2.10
3502 4051 5.129155 GGATCTACTAGCCTACTCCGATCTA 59.871 48.000 0.00 0.00 0.00 1.98
3503 4052 4.080751 GGATCTACTAGCCTACTCCGATCT 60.081 50.000 0.00 0.00 0.00 2.75
3504 4053 4.193865 GGATCTACTAGCCTACTCCGATC 58.806 52.174 0.00 0.00 0.00 3.69
3505 4054 3.369681 CGGATCTACTAGCCTACTCCGAT 60.370 52.174 13.19 0.00 45.23 4.18
3506 4055 2.028294 CGGATCTACTAGCCTACTCCGA 60.028 54.545 13.19 0.00 45.23 4.55
3507 4056 2.348660 CGGATCTACTAGCCTACTCCG 58.651 57.143 6.88 6.88 38.31 4.63
3508 4057 2.040145 ACCGGATCTACTAGCCTACTCC 59.960 54.545 9.46 0.00 0.00 3.85
3509 4058 3.075884 CACCGGATCTACTAGCCTACTC 58.924 54.545 9.46 0.00 0.00 2.59
3510 4059 2.709934 TCACCGGATCTACTAGCCTACT 59.290 50.000 9.46 0.00 0.00 2.57
3511 4060 3.137446 TCACCGGATCTACTAGCCTAC 57.863 52.381 9.46 0.00 0.00 3.18
3512 4061 3.484407 GTTCACCGGATCTACTAGCCTA 58.516 50.000 9.46 0.00 0.00 3.93
3513 4062 2.308690 GTTCACCGGATCTACTAGCCT 58.691 52.381 9.46 0.00 0.00 4.58
3514 4063 1.340568 GGTTCACCGGATCTACTAGCC 59.659 57.143 9.46 0.00 0.00 3.93
3515 4064 2.308690 AGGTTCACCGGATCTACTAGC 58.691 52.381 9.46 0.00 42.08 3.42
3516 4065 3.819902 GGTAGGTTCACCGGATCTACTAG 59.180 52.174 9.46 0.00 42.08 2.57
3517 4066 3.461085 AGGTAGGTTCACCGGATCTACTA 59.539 47.826 9.46 1.80 43.84 1.82
3518 4067 2.244252 AGGTAGGTTCACCGGATCTACT 59.756 50.000 9.46 2.91 43.84 2.57
3519 4068 2.664015 AGGTAGGTTCACCGGATCTAC 58.336 52.381 9.46 5.92 43.84 2.59
3520 4069 3.028850 CAAGGTAGGTTCACCGGATCTA 58.971 50.000 9.46 0.00 43.84 1.98
3521 4070 1.831736 CAAGGTAGGTTCACCGGATCT 59.168 52.381 9.46 0.00 43.84 2.75
3522 4071 1.553704 ACAAGGTAGGTTCACCGGATC 59.446 52.381 9.46 0.00 43.84 3.36
3523 4072 1.553704 GACAAGGTAGGTTCACCGGAT 59.446 52.381 9.46 0.00 43.84 4.18
3524 4073 0.971386 GACAAGGTAGGTTCACCGGA 59.029 55.000 9.46 0.00 43.84 5.14
3525 4074 0.036671 GGACAAGGTAGGTTCACCGG 60.037 60.000 0.00 0.00 43.84 5.28
3526 4075 0.682852 TGGACAAGGTAGGTTCACCG 59.317 55.000 0.00 0.00 43.84 4.94
3527 4076 1.610886 GCTGGACAAGGTAGGTTCACC 60.611 57.143 0.00 0.00 39.02 4.02
3528 4077 1.071699 TGCTGGACAAGGTAGGTTCAC 59.928 52.381 0.00 0.00 0.00 3.18
3529 4078 1.347707 CTGCTGGACAAGGTAGGTTCA 59.652 52.381 0.00 0.00 0.00 3.18
3530 4079 1.946283 GCTGCTGGACAAGGTAGGTTC 60.946 57.143 0.00 0.00 0.00 3.62
3531 4080 0.036875 GCTGCTGGACAAGGTAGGTT 59.963 55.000 0.00 0.00 0.00 3.50
3532 4081 1.679898 GCTGCTGGACAAGGTAGGT 59.320 57.895 0.00 0.00 0.00 3.08
3533 4082 1.448540 CGCTGCTGGACAAGGTAGG 60.449 63.158 0.00 0.00 0.00 3.18
3534 4083 1.448540 CCGCTGCTGGACAAGGTAG 60.449 63.158 4.82 0.00 0.00 3.18
3535 4084 1.264749 ATCCGCTGCTGGACAAGGTA 61.265 55.000 13.83 0.00 41.85 3.08
3536 4085 2.596851 ATCCGCTGCTGGACAAGGT 61.597 57.895 13.83 0.00 41.85 3.50
3537 4086 2.110967 CATCCGCTGCTGGACAAGG 61.111 63.158 13.83 0.00 41.85 3.61
3538 4087 0.674581 TTCATCCGCTGCTGGACAAG 60.675 55.000 13.83 8.50 41.85 3.16
3539 4088 0.955428 GTTCATCCGCTGCTGGACAA 60.955 55.000 13.83 8.36 41.85 3.18
3540 4089 1.375908 GTTCATCCGCTGCTGGACA 60.376 57.895 13.83 3.48 41.85 4.02
3541 4090 1.078848 AGTTCATCCGCTGCTGGAC 60.079 57.895 13.83 3.37 41.85 4.02
3542 4091 1.219124 GAGTTCATCCGCTGCTGGA 59.781 57.895 13.89 13.89 43.58 3.86
3543 4092 2.169789 CGAGTTCATCCGCTGCTGG 61.170 63.158 0.00 0.82 0.00 4.85
3544 4093 1.144565 CTCGAGTTCATCCGCTGCTG 61.145 60.000 3.62 0.00 0.00 4.41
3545 4094 1.140589 CTCGAGTTCATCCGCTGCT 59.859 57.895 3.62 0.00 0.00 4.24
3546 4095 2.520904 GCTCGAGTTCATCCGCTGC 61.521 63.158 15.13 0.00 0.00 5.25
3547 4096 1.880340 GGCTCGAGTTCATCCGCTG 60.880 63.158 15.13 0.00 0.00 5.18
3548 4097 2.496817 GGCTCGAGTTCATCCGCT 59.503 61.111 15.13 0.00 0.00 5.52
3549 4098 2.956964 CGGCTCGAGTTCATCCGC 60.957 66.667 15.13 0.00 33.36 5.54
3550 4099 2.278857 CCGGCTCGAGTTCATCCG 60.279 66.667 18.15 18.15 39.79 4.18
3551 4100 1.066587 CTCCGGCTCGAGTTCATCC 59.933 63.158 15.13 5.09 0.00 3.51
3552 4101 1.066587 CCTCCGGCTCGAGTTCATC 59.933 63.158 15.13 0.00 0.00 2.92
3553 4102 3.082579 GCCTCCGGCTCGAGTTCAT 62.083 63.158 15.13 0.00 46.69 2.57
3554 4103 3.760035 GCCTCCGGCTCGAGTTCA 61.760 66.667 15.13 0.00 46.69 3.18
3564 4113 4.838152 CACCACGATGGCCTCCGG 62.838 72.222 18.70 0.00 42.67 5.14
3566 4115 4.101448 AGCACCACGATGGCCTCC 62.101 66.667 3.32 0.00 42.67 4.30
3567 4116 2.821366 CAGCACCACGATGGCCTC 60.821 66.667 3.32 0.00 42.67 4.70
3568 4117 4.415150 CCAGCACCACGATGGCCT 62.415 66.667 3.32 0.00 42.67 5.19
3572 4121 4.720902 TGCCCCAGCACCACGATG 62.721 66.667 0.00 0.00 46.52 3.84
3588 4137 3.190849 CTCTGCCATCGCCGTGTG 61.191 66.667 0.00 0.00 0.00 3.82
3589 4138 3.362399 CTCTCTGCCATCGCCGTGT 62.362 63.158 0.00 0.00 0.00 4.49
3590 4139 2.584418 CTCTCTGCCATCGCCGTG 60.584 66.667 0.00 0.00 0.00 4.94
3591 4140 3.071206 ACTCTCTGCCATCGCCGT 61.071 61.111 0.00 0.00 0.00 5.68
3592 4141 2.584418 CACTCTCTGCCATCGCCG 60.584 66.667 0.00 0.00 0.00 6.46
3593 4142 2.202987 CCACTCTCTGCCATCGCC 60.203 66.667 0.00 0.00 0.00 5.54
3594 4143 2.202987 CCCACTCTCTGCCATCGC 60.203 66.667 0.00 0.00 0.00 4.58
3595 4144 2.202987 GCCCACTCTCTGCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
3596 4145 2.202987 CGCCCACTCTCTGCCATC 60.203 66.667 0.00 0.00 0.00 3.51
3597 4146 2.685017 TCGCCCACTCTCTGCCAT 60.685 61.111 0.00 0.00 0.00 4.40
3598 4147 3.385384 CTCGCCCACTCTCTGCCA 61.385 66.667 0.00 0.00 0.00 4.92
3599 4148 4.154347 CCTCGCCCACTCTCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
3600 4149 3.386237 ACCTCGCCCACTCTCTGC 61.386 66.667 0.00 0.00 0.00 4.26
3601 4150 2.575993 CACCTCGCCCACTCTCTG 59.424 66.667 0.00 0.00 0.00 3.35
3602 4151 2.681778 CCACCTCGCCCACTCTCT 60.682 66.667 0.00 0.00 0.00 3.10
3603 4152 2.680352 TCCACCTCGCCCACTCTC 60.680 66.667 0.00 0.00 0.00 3.20
3604 4153 2.681778 CTCCACCTCGCCCACTCT 60.682 66.667 0.00 0.00 0.00 3.24
3605 4154 3.775654 CCTCCACCTCGCCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
3606 4155 4.640690 ACCTCCACCTCGCCCACT 62.641 66.667 0.00 0.00 0.00 4.00
3607 4156 4.394712 CACCTCCACCTCGCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
3610 4159 3.775654 CTCCACCTCCACCTCGCC 61.776 72.222 0.00 0.00 0.00 5.54
3611 4160 4.459089 GCTCCACCTCCACCTCGC 62.459 72.222 0.00 0.00 0.00 5.03
3612 4161 2.232298 GAAGCTCCACCTCCACCTCG 62.232 65.000 0.00 0.00 0.00 4.63
3613 4162 1.599576 GAAGCTCCACCTCCACCTC 59.400 63.158 0.00 0.00 0.00 3.85
3614 4163 1.920835 GGAAGCTCCACCTCCACCT 60.921 63.158 0.00 0.00 36.28 4.00
3615 4164 2.671682 GGAAGCTCCACCTCCACC 59.328 66.667 0.00 0.00 36.28 4.61
3616 4165 2.671682 GGGAAGCTCCACCTCCAC 59.328 66.667 3.85 0.00 38.64 4.02
3617 4166 3.003173 CGGGAAGCTCCACCTCCA 61.003 66.667 3.85 0.00 38.64 3.86
3618 4167 3.003763 ACGGGAAGCTCCACCTCC 61.004 66.667 0.00 0.00 38.64 4.30
3619 4168 2.232298 CTCACGGGAAGCTCCACCTC 62.232 65.000 0.00 0.00 38.64 3.85
3620 4169 2.203788 TCACGGGAAGCTCCACCT 60.204 61.111 0.00 0.00 38.64 4.00
3621 4170 2.266055 CTCACGGGAAGCTCCACC 59.734 66.667 0.00 0.00 38.64 4.61
3622 4171 2.435059 GCTCACGGGAAGCTCCAC 60.435 66.667 0.00 0.00 38.64 4.02
3623 4172 2.922503 TGCTCACGGGAAGCTCCA 60.923 61.111 9.89 0.00 38.64 3.86
3624 4173 2.435059 GTGCTCACGGGAAGCTCC 60.435 66.667 9.89 0.00 35.23 4.70
3625 4174 2.435059 GGTGCTCACGGGAAGCTC 60.435 66.667 9.89 6.64 0.00 4.09
3626 4175 4.379243 CGGTGCTCACGGGAAGCT 62.379 66.667 9.89 0.00 0.00 3.74
3638 4187 2.365095 ATCTAGGGTTAGCGCGGTGC 62.365 60.000 23.02 13.47 46.98 5.01
3639 4188 0.318784 GATCTAGGGTTAGCGCGGTG 60.319 60.000 23.02 1.53 0.00 4.94
3640 4189 1.793134 CGATCTAGGGTTAGCGCGGT 61.793 60.000 17.70 17.70 0.00 5.68
3641 4190 1.081376 CGATCTAGGGTTAGCGCGG 60.081 63.158 8.83 0.00 0.00 6.46
3642 4191 1.081376 CCGATCTAGGGTTAGCGCG 60.081 63.158 0.00 0.00 0.00 6.86
3643 4192 1.199558 CTACCGATCTAGGGTTAGCGC 59.800 57.143 0.00 0.00 38.99 5.92
3644 4193 1.811359 CCTACCGATCTAGGGTTAGCG 59.189 57.143 0.86 0.00 38.99 4.26
3645 4194 2.169330 CCCTACCGATCTAGGGTTAGC 58.831 57.143 15.95 0.00 45.94 3.09
3651 4200 3.010361 ACCTACATCCCTACCGATCTAGG 59.990 52.174 1.73 1.73 37.10 3.02
3652 4201 4.011023 CACCTACATCCCTACCGATCTAG 58.989 52.174 0.00 0.00 0.00 2.43
3653 4202 3.245158 CCACCTACATCCCTACCGATCTA 60.245 52.174 0.00 0.00 0.00 1.98
3654 4203 2.491086 CCACCTACATCCCTACCGATCT 60.491 54.545 0.00 0.00 0.00 2.75
3655 4204 1.893801 CCACCTACATCCCTACCGATC 59.106 57.143 0.00 0.00 0.00 3.69
3656 4205 1.482553 CCCACCTACATCCCTACCGAT 60.483 57.143 0.00 0.00 0.00 4.18
3657 4206 0.105862 CCCACCTACATCCCTACCGA 60.106 60.000 0.00 0.00 0.00 4.69
3658 4207 1.119574 CCCCACCTACATCCCTACCG 61.120 65.000 0.00 0.00 0.00 4.02
3659 4208 0.030399 ACCCCACCTACATCCCTACC 60.030 60.000 0.00 0.00 0.00 3.18
3660 4209 1.889174 AACCCCACCTACATCCCTAC 58.111 55.000 0.00 0.00 0.00 3.18
3661 4210 2.201830 CAAACCCCACCTACATCCCTA 58.798 52.381 0.00 0.00 0.00 3.53
3662 4211 0.999712 CAAACCCCACCTACATCCCT 59.000 55.000 0.00 0.00 0.00 4.20
3663 4212 0.702316 ACAAACCCCACCTACATCCC 59.298 55.000 0.00 0.00 0.00 3.85
3664 4213 1.615919 CCACAAACCCCACCTACATCC 60.616 57.143 0.00 0.00 0.00 3.51
3665 4214 1.834188 CCACAAACCCCACCTACATC 58.166 55.000 0.00 0.00 0.00 3.06
3666 4215 0.251608 GCCACAAACCCCACCTACAT 60.252 55.000 0.00 0.00 0.00 2.29
3667 4216 1.151908 GCCACAAACCCCACCTACA 59.848 57.895 0.00 0.00 0.00 2.74
3668 4217 0.893727 CTGCCACAAACCCCACCTAC 60.894 60.000 0.00 0.00 0.00 3.18
3669 4218 1.458486 CTGCCACAAACCCCACCTA 59.542 57.895 0.00 0.00 0.00 3.08
3670 4219 2.198426 CTGCCACAAACCCCACCT 59.802 61.111 0.00 0.00 0.00 4.00
3671 4220 3.615709 GCTGCCACAAACCCCACC 61.616 66.667 0.00 0.00 0.00 4.61
3672 4221 3.977244 CGCTGCCACAAACCCCAC 61.977 66.667 0.00 0.00 0.00 4.61
3673 4222 2.992817 AATCGCTGCCACAAACCCCA 62.993 55.000 0.00 0.00 0.00 4.96
3674 4223 0.963355 TAATCGCTGCCACAAACCCC 60.963 55.000 0.00 0.00 0.00 4.95
3675 4224 0.885196 TTAATCGCTGCCACAAACCC 59.115 50.000 0.00 0.00 0.00 4.11
3676 4225 1.402325 GGTTAATCGCTGCCACAAACC 60.402 52.381 0.00 0.01 0.00 3.27
3677 4226 1.539827 AGGTTAATCGCTGCCACAAAC 59.460 47.619 0.00 0.00 0.00 2.93
3678 4227 1.810151 GAGGTTAATCGCTGCCACAAA 59.190 47.619 0.00 0.00 0.00 2.83
3679 4228 1.448985 GAGGTTAATCGCTGCCACAA 58.551 50.000 0.00 0.00 0.00 3.33
3680 4229 0.739462 CGAGGTTAATCGCTGCCACA 60.739 55.000 0.00 0.00 35.66 4.17
3681 4230 0.739813 ACGAGGTTAATCGCTGCCAC 60.740 55.000 0.00 0.00 46.60 5.01
3682 4231 0.739462 CACGAGGTTAATCGCTGCCA 60.739 55.000 0.00 0.00 46.60 4.92
3683 4232 0.459585 TCACGAGGTTAATCGCTGCC 60.460 55.000 0.00 0.00 46.60 4.85
3684 4233 0.924090 CTCACGAGGTTAATCGCTGC 59.076 55.000 0.00 0.00 46.60 5.25
3685 4234 2.186076 GACTCACGAGGTTAATCGCTG 58.814 52.381 0.00 0.00 46.60 5.18
3686 4235 1.202154 CGACTCACGAGGTTAATCGCT 60.202 52.381 0.00 0.00 46.60 4.93
3687 4236 1.189403 CGACTCACGAGGTTAATCGC 58.811 55.000 0.00 0.00 46.60 4.58
3689 4238 1.918609 GCACGACTCACGAGGTTAATC 59.081 52.381 0.00 0.00 45.77 1.75
3690 4239 1.403780 GGCACGACTCACGAGGTTAAT 60.404 52.381 0.00 0.00 45.77 1.40
3691 4240 0.038892 GGCACGACTCACGAGGTTAA 60.039 55.000 0.00 0.00 45.77 2.01
3692 4241 1.582968 GGCACGACTCACGAGGTTA 59.417 57.895 0.00 0.00 45.77 2.85
3693 4242 2.338984 GGCACGACTCACGAGGTT 59.661 61.111 0.00 0.00 45.77 3.50
3694 4243 3.681835 GGGCACGACTCACGAGGT 61.682 66.667 0.00 0.00 45.77 3.85
3695 4244 4.436998 GGGGCACGACTCACGAGG 62.437 72.222 0.00 0.00 45.77 4.63
3712 4261 1.921869 ATAAACAGAGGTGGGGGCCG 61.922 60.000 0.00 0.00 0.00 6.13
3713 4262 1.218844 TATAAACAGAGGTGGGGGCC 58.781 55.000 0.00 0.00 0.00 5.80
3714 4263 3.559384 GCTATATAAACAGAGGTGGGGGC 60.559 52.174 0.00 0.00 0.00 5.80
3715 4264 3.306780 CGCTATATAAACAGAGGTGGGGG 60.307 52.174 0.00 0.00 0.00 5.40
3716 4265 3.864921 GCGCTATATAAACAGAGGTGGGG 60.865 52.174 0.00 0.00 0.00 4.96
3717 4266 3.326747 GCGCTATATAAACAGAGGTGGG 58.673 50.000 0.00 0.00 0.00 4.61
3718 4267 2.987149 CGCGCTATATAAACAGAGGTGG 59.013 50.000 5.56 0.00 0.00 4.61
3719 4268 2.987149 CCGCGCTATATAAACAGAGGTG 59.013 50.000 5.56 0.00 0.00 4.00
3720 4269 2.029290 CCCGCGCTATATAAACAGAGGT 60.029 50.000 5.56 0.00 0.00 3.85
3721 4270 2.029290 ACCCGCGCTATATAAACAGAGG 60.029 50.000 5.56 0.00 0.00 3.69
3722 4271 3.243336 GACCCGCGCTATATAAACAGAG 58.757 50.000 5.56 0.00 0.00 3.35
3723 4272 2.624364 TGACCCGCGCTATATAAACAGA 59.376 45.455 5.56 0.00 0.00 3.41
3724 4273 2.729882 GTGACCCGCGCTATATAAACAG 59.270 50.000 5.56 0.00 0.00 3.16
3725 4274 2.101082 TGTGACCCGCGCTATATAAACA 59.899 45.455 5.56 0.00 0.00 2.83
3726 4275 2.729882 CTGTGACCCGCGCTATATAAAC 59.270 50.000 5.56 0.00 0.00 2.01
3727 4276 2.288579 CCTGTGACCCGCGCTATATAAA 60.289 50.000 5.56 0.00 0.00 1.40
3728 4277 1.271379 CCTGTGACCCGCGCTATATAA 59.729 52.381 5.56 0.00 0.00 0.98
3729 4278 0.885879 CCTGTGACCCGCGCTATATA 59.114 55.000 5.56 0.00 0.00 0.86
3730 4279 1.666011 CCTGTGACCCGCGCTATAT 59.334 57.895 5.56 0.00 0.00 0.86
3731 4280 2.495409 CCCTGTGACCCGCGCTATA 61.495 63.158 5.56 0.00 0.00 1.31
3732 4281 3.849951 CCCTGTGACCCGCGCTAT 61.850 66.667 5.56 0.00 0.00 2.97
3741 4290 3.897122 TTGGTGGGCCCCTGTGAC 61.897 66.667 22.27 10.43 0.00 3.67
3742 4291 3.897122 GTTGGTGGGCCCCTGTGA 61.897 66.667 22.27 0.00 0.00 3.58
3743 4292 4.994756 GGTTGGTGGGCCCCTGTG 62.995 72.222 22.27 0.00 0.00 3.66
3745 4294 3.996621 ATGGTTGGTGGGCCCCTG 61.997 66.667 22.27 0.00 0.00 4.45
3746 4295 3.996621 CATGGTTGGTGGGCCCCT 61.997 66.667 22.27 0.00 0.00 4.79
3760 4309 1.288752 GACGCCCAACCAAACCATG 59.711 57.895 0.00 0.00 0.00 3.66
3761 4310 1.906333 GGACGCCCAACCAAACCAT 60.906 57.895 0.00 0.00 0.00 3.55
3762 4311 2.519780 GGACGCCCAACCAAACCA 60.520 61.111 0.00 0.00 0.00 3.67
3763 4312 3.299977 GGGACGCCCAACCAAACC 61.300 66.667 9.72 0.00 44.65 3.27
3780 4329 4.933064 GACTCGCGCCCTGATCGG 62.933 72.222 0.00 0.00 0.00 4.18
3781 4330 3.699955 TTGACTCGCGCCCTGATCG 62.700 63.158 0.00 0.00 0.00 3.69
3782 4331 1.880340 CTTGACTCGCGCCCTGATC 60.880 63.158 0.00 0.00 0.00 2.92
3783 4332 2.185350 CTTGACTCGCGCCCTGAT 59.815 61.111 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.