Multiple sequence alignment - TraesCS7D01G117300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G117300 chr7D 100.000 2747 0 0 1 2747 72385338 72388084 0.000000e+00 5073.0
1 TraesCS7D01G117300 chr7D 100.000 503 0 0 3141 3643 72388478 72388980 0.000000e+00 929.0
2 TraesCS7D01G117300 chr7D 93.694 555 33 2 641 1193 72453666 72454220 0.000000e+00 830.0
3 TraesCS7D01G117300 chr7D 86.726 678 83 5 2 672 192260112 192259435 0.000000e+00 747.0
4 TraesCS7D01G117300 chr7D 95.067 223 9 2 1188 1409 72462848 72463069 2.080000e-92 350.0
5 TraesCS7D01G117300 chr7A 89.403 821 49 13 697 1510 77505380 77506169 0.000000e+00 1000.0
6 TraesCS7D01G117300 chr7A 94.541 403 11 2 1530 1921 77522236 77522638 2.400000e-171 612.0
7 TraesCS7D01G117300 chr7A 95.058 344 11 3 2395 2736 77522639 77522978 1.490000e-148 536.0
8 TraesCS7D01G117300 chr7A 91.223 376 18 5 3141 3508 77523265 77523633 7.030000e-137 497.0
9 TraesCS7D01G117300 chr7A 97.059 136 4 0 3508 3643 77523661 77523796 2.830000e-56 230.0
10 TraesCS7D01G117300 chr7A 84.810 79 11 1 738 816 53878699 53878622 1.080000e-10 78.7
11 TraesCS7D01G117300 chr2A 78.261 1564 286 42 1095 2633 709420676 709419142 0.000000e+00 955.0
12 TraesCS7D01G117300 chr2A 83.410 651 102 6 1987 2633 709697962 709698610 1.870000e-167 599.0
13 TraesCS7D01G117300 chr2A 77.210 939 184 24 990 1913 709696389 709697312 4.170000e-144 521.0
14 TraesCS7D01G117300 chr2A 84.559 136 19 2 3508 3643 75366283 75366416 2.280000e-27 134.0
15 TraesCS7D01G117300 chr5A 87.297 677 76 9 2 669 332413549 332414224 0.000000e+00 765.0
16 TraesCS7D01G117300 chr3D 86.873 678 82 5 2 672 283871718 283871041 0.000000e+00 752.0
17 TraesCS7D01G117300 chr3D 86.726 678 83 5 2 672 296601583 296600906 0.000000e+00 747.0
18 TraesCS7D01G117300 chr3D 85.938 128 17 1 3516 3643 430392358 430392232 6.350000e-28 135.0
19 TraesCS7D01G117300 chr6A 86.667 675 82 7 2 669 103275713 103276386 0.000000e+00 741.0
20 TraesCS7D01G117300 chr6A 79.851 134 23 4 3249 3379 419195 419063 1.080000e-15 95.3
21 TraesCS7D01G117300 chr6A 75.449 167 38 3 681 846 596502204 596502040 1.080000e-10 78.7
22 TraesCS7D01G117300 chr5B 86.578 678 84 5 2 672 707449797 707449120 0.000000e+00 741.0
23 TraesCS7D01G117300 chr3B 86.598 679 82 8 2 672 633215391 633214714 0.000000e+00 741.0
24 TraesCS7D01G117300 chr3B 85.496 131 19 0 3508 3638 562907042 562906912 1.760000e-28 137.0
25 TraesCS7D01G117300 chr1D 86.431 678 85 5 2 672 239653119 239652442 0.000000e+00 736.0
26 TraesCS7D01G117300 chr1D 87.591 137 15 2 3508 3643 474233207 474233072 1.350000e-34 158.0
27 TraesCS7D01G117300 chr1D 87.395 119 14 1 3332 3450 494164727 494164844 6.350000e-28 135.0
28 TraesCS7D01G117300 chr1D 83.333 114 18 1 3341 3453 57070709 57070596 1.790000e-18 104.0
29 TraesCS7D01G117300 chr2B 86.303 679 85 7 2 672 736224164 736224842 0.000000e+00 732.0
30 TraesCS7D01G117300 chrUn 83.257 651 103 6 1987 2633 300837627 300836979 8.710000e-166 593.0
31 TraesCS7D01G117300 chrUn 87.591 137 15 2 3508 3643 150141848 150141983 1.350000e-34 158.0
32 TraesCS7D01G117300 chrUn 87.591 137 15 2 3508 3643 172386269 172386134 1.350000e-34 158.0
33 TraesCS7D01G117300 chrUn 87.591 137 15 2 3508 3643 321414546 321414681 1.350000e-34 158.0
34 TraesCS7D01G117300 chr1B 90.076 131 12 1 3508 3638 606309806 606309677 6.260000e-38 169.0
35 TraesCS7D01G117300 chr1B 77.533 227 41 6 3231 3454 608854882 608855101 1.060000e-25 128.0
36 TraesCS7D01G117300 chr1A 79.755 163 28 5 681 841 1677223 1677382 2.970000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G117300 chr7D 72385338 72388980 3642 False 3001.00 5073 100.00000 1 3643 2 chr7D.!!$F3 3642
1 TraesCS7D01G117300 chr7D 72453666 72454220 554 False 830.00 830 93.69400 641 1193 1 chr7D.!!$F1 552
2 TraesCS7D01G117300 chr7D 192259435 192260112 677 True 747.00 747 86.72600 2 672 1 chr7D.!!$R1 670
3 TraesCS7D01G117300 chr7A 77505380 77506169 789 False 1000.00 1000 89.40300 697 1510 1 chr7A.!!$F1 813
4 TraesCS7D01G117300 chr7A 77522236 77523796 1560 False 468.75 612 94.47025 1530 3643 4 chr7A.!!$F2 2113
5 TraesCS7D01G117300 chr2A 709419142 709420676 1534 True 955.00 955 78.26100 1095 2633 1 chr2A.!!$R1 1538
6 TraesCS7D01G117300 chr2A 709696389 709698610 2221 False 560.00 599 80.31000 990 2633 2 chr2A.!!$F2 1643
7 TraesCS7D01G117300 chr5A 332413549 332414224 675 False 765.00 765 87.29700 2 669 1 chr5A.!!$F1 667
8 TraesCS7D01G117300 chr3D 283871041 283871718 677 True 752.00 752 86.87300 2 672 1 chr3D.!!$R1 670
9 TraesCS7D01G117300 chr3D 296600906 296601583 677 True 747.00 747 86.72600 2 672 1 chr3D.!!$R2 670
10 TraesCS7D01G117300 chr6A 103275713 103276386 673 False 741.00 741 86.66700 2 669 1 chr6A.!!$F1 667
11 TraesCS7D01G117300 chr5B 707449120 707449797 677 True 741.00 741 86.57800 2 672 1 chr5B.!!$R1 670
12 TraesCS7D01G117300 chr3B 633214714 633215391 677 True 741.00 741 86.59800 2 672 1 chr3B.!!$R2 670
13 TraesCS7D01G117300 chr1D 239652442 239653119 677 True 736.00 736 86.43100 2 672 1 chr1D.!!$R2 670
14 TraesCS7D01G117300 chr2B 736224164 736224842 678 False 732.00 732 86.30300 2 672 1 chr2B.!!$F1 670
15 TraesCS7D01G117300 chrUn 300836979 300837627 648 True 593.00 593 83.25700 1987 2633 1 chrUn.!!$R2 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 368 0.693049 CTTACCTCCTGGCCAGTTGT 59.307 55.0 30.63 24.12 36.63 3.32 F
1931 1974 0.097674 GACGCATGCTGCCTTAACTG 59.902 55.0 17.13 0.00 41.12 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2719 0.035056 GCTTGTGCCCTAGACATGGT 60.035 55.0 0.00 0.0 0.00 3.55 R
3373 4005 1.577328 CTTCACATGCGGCGAAACCT 61.577 55.0 12.98 0.0 35.61 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 6.826741 AGTGCGTACAATGGAAAATAACCTAT 59.173 34.615 6.38 0.00 0.00 2.57
115 117 9.178758 AGGAGAAGCATCTTTATCGTTAAAAAT 57.821 29.630 0.00 0.00 35.54 1.82
144 146 3.671008 TTCTACTTAGCCAAAGCGACA 57.329 42.857 0.00 0.00 46.67 4.35
153 155 4.202245 AGCCAAAGCGACAATAGTAAGA 57.798 40.909 0.00 0.00 46.67 2.10
156 158 3.241995 CCAAAGCGACAATAGTAAGACGC 60.242 47.826 12.36 12.36 46.20 5.19
193 195 9.533253 CCTTATTAGCATTTTGAACCTATTTGG 57.467 33.333 0.00 0.00 42.93 3.28
220 222 3.120041 CGTCCAACCAATGACCAAAAAC 58.880 45.455 0.00 0.00 0.00 2.43
251 253 6.613755 ACACTTATGGGCGTATACAAATTC 57.386 37.500 3.32 0.00 0.00 2.17
254 256 6.147164 CACTTATGGGCGTATACAAATTCGAT 59.853 38.462 3.32 0.00 0.00 3.59
256 258 3.135225 TGGGCGTATACAAATTCGATGG 58.865 45.455 3.32 0.00 0.00 3.51
263 265 7.307514 GGCGTATACAAATTCGATGGTATTTGA 60.308 37.037 21.31 9.65 41.02 2.69
270 272 9.173021 ACAAATTCGATGGTATTTGAATGACTA 57.827 29.630 21.31 0.00 41.02 2.59
275 277 8.956533 TCGATGGTATTTGAATGACTAATCAA 57.043 30.769 0.00 0.00 38.69 2.57
286 288 4.690184 TGACTAATCAAGTAGAACGCGA 57.310 40.909 15.93 0.00 39.07 5.87
289 291 6.097356 TGACTAATCAAGTAGAACGCGAAAT 58.903 36.000 15.93 0.00 39.07 2.17
290 292 6.588756 TGACTAATCAAGTAGAACGCGAAATT 59.411 34.615 15.93 0.00 39.07 1.82
291 293 7.756272 TGACTAATCAAGTAGAACGCGAAATTA 59.244 33.333 15.93 0.00 39.07 1.40
292 294 8.470040 ACTAATCAAGTAGAACGCGAAATTAA 57.530 30.769 15.93 0.00 36.36 1.40
293 295 8.378421 ACTAATCAAGTAGAACGCGAAATTAAC 58.622 33.333 15.93 2.85 36.36 2.01
294 296 6.715344 ATCAAGTAGAACGCGAAATTAACA 57.285 33.333 15.93 0.00 0.00 2.41
295 297 6.715344 TCAAGTAGAACGCGAAATTAACAT 57.285 33.333 15.93 0.00 0.00 2.71
297 299 8.242085 TCAAGTAGAACGCGAAATTAACATTA 57.758 30.769 15.93 0.00 0.00 1.90
331 334 6.299604 GTGTTTGATTGTCTCGTTATGAGTG 58.700 40.000 1.05 0.00 45.46 3.51
351 354 5.407502 AGTGCAAAAACAACACTTCTTACC 58.592 37.500 0.00 0.00 41.78 2.85
365 368 0.693049 CTTACCTCCTGGCCAGTTGT 59.307 55.000 30.63 24.12 36.63 3.32
373 376 2.191354 CTGGCCAGTTGTGTCATGCG 62.191 60.000 25.53 0.00 0.00 4.73
385 388 2.290641 GTGTCATGCGAGGTTGTCTTTT 59.709 45.455 0.00 0.00 0.00 2.27
397 400 4.705023 AGGTTGTCTTTTGTTAGCACAACT 59.295 37.500 11.77 0.00 42.87 3.16
415 418 5.067936 CACAACTCCTCTACGAAGATACCAT 59.932 44.000 0.00 0.00 0.00 3.55
421 424 7.392113 ACTCCTCTACGAAGATACCATATGAAG 59.608 40.741 3.65 0.00 0.00 3.02
469 477 9.814899 TTTTTCAGATTTTCTTGTTATTGCTCA 57.185 25.926 0.00 0.00 0.00 4.26
479 487 4.481368 TGTTATTGCTCATCGGTACCTT 57.519 40.909 10.90 0.00 0.00 3.50
485 493 6.665992 ATTGCTCATCGGTACCTTAGAATA 57.334 37.500 10.90 0.00 0.00 1.75
488 496 4.214971 GCTCATCGGTACCTTAGAATACGA 59.785 45.833 10.90 0.00 0.00 3.43
522 531 8.809468 ATACATAGAGTCTACAGTGAAAGACA 57.191 34.615 23.19 10.36 43.74 3.41
539 548 7.763071 GTGAAAGACACCGATATAGTAAGGTTT 59.237 37.037 0.00 0.00 43.05 3.27
542 551 6.803642 AGACACCGATATAGTAAGGTTTCAC 58.196 40.000 3.04 0.00 36.28 3.18
583 592 4.900684 TGTGTCAGGTTAATCGAATCCAA 58.099 39.130 0.00 0.00 0.00 3.53
586 595 5.411669 GTGTCAGGTTAATCGAATCCAAACT 59.588 40.000 0.00 0.00 0.00 2.66
587 596 6.001460 TGTCAGGTTAATCGAATCCAAACTT 58.999 36.000 0.00 0.00 0.00 2.66
588 597 7.118680 GTGTCAGGTTAATCGAATCCAAACTTA 59.881 37.037 0.00 0.00 0.00 2.24
625 634 2.038387 GACATAAGTCGGGTGCCAAT 57.962 50.000 0.00 0.00 34.60 3.16
626 635 2.365582 GACATAAGTCGGGTGCCAATT 58.634 47.619 0.00 0.00 34.60 2.32
642 652 3.428862 GCCAATTAAATCCACCTGAACGG 60.429 47.826 0.00 0.00 39.35 4.44
645 655 5.047660 CCAATTAAATCCACCTGAACGGAAA 60.048 40.000 0.00 0.00 34.22 3.13
688 698 3.785486 CATCTCTTGTAATCGGAGTGCA 58.215 45.455 0.00 0.00 0.00 4.57
690 700 2.826128 TCTCTTGTAATCGGAGTGCAGT 59.174 45.455 0.00 0.00 0.00 4.40
731 741 1.829222 AGGACCGTCCGTAATCATGTT 59.171 47.619 12.04 0.00 42.75 2.71
740 750 5.751509 CGTCCGTAATCATGTTCCAAAGATA 59.248 40.000 0.00 0.00 0.00 1.98
786 796 2.280183 GCAAATCTCGACGTCATGTCTC 59.720 50.000 17.16 0.00 45.87 3.36
800 810 2.524569 TGTCTCGTGTGATTGCTTGA 57.475 45.000 0.00 0.00 0.00 3.02
807 817 2.222886 CGTGTGATTGCTTGATCTTCGG 60.223 50.000 0.00 0.00 0.00 4.30
814 824 2.747436 TGCTTGATCTTCGGATGATCG 58.253 47.619 21.74 13.45 42.18 3.69
819 829 3.706698 TGATCTTCGGATGATCGACAAC 58.293 45.455 21.74 5.61 42.18 3.32
844 854 5.753438 GTGCCTCGAATTATTCTGACATACA 59.247 40.000 3.34 0.00 0.00 2.29
859 870 1.067212 CATACAGCCCTACGGAGTGAC 59.933 57.143 0.00 0.00 45.73 3.67
865 876 1.338769 GCCCTACGGAGTGACAAATGT 60.339 52.381 0.00 0.00 45.73 2.71
968 982 2.235155 GACCCCCGCAAAATTAAATGGT 59.765 45.455 0.00 0.00 0.00 3.55
975 989 4.742659 CCGCAAAATTAAATGGTAATCCCG 59.257 41.667 0.00 0.00 35.15 5.14
978 992 5.683770 GCAAAATTAAATGGTAATCCCGGCT 60.684 40.000 0.00 0.00 35.15 5.52
994 1008 2.223829 CCGGCTGACAATACAGAGTAGG 60.224 54.545 0.00 0.00 39.94 3.18
1082 1102 9.261035 GATGATGATCTATAGAGGTTCCCTTAA 57.739 37.037 8.70 0.00 31.76 1.85
1087 1107 8.956860 TGATCTATAGAGGTTCCCTTAACTCTA 58.043 37.037 8.70 0.00 38.23 2.43
1196 1216 1.183549 GCCTTACGGAACCTCTCTCA 58.816 55.000 0.00 0.00 0.00 3.27
1308 1328 0.681733 ACGACCACATCTTCTGCACT 59.318 50.000 0.00 0.00 0.00 4.40
1346 1366 2.507992 CAAGGTCCTCAGCGAGCG 60.508 66.667 0.00 0.00 35.40 5.03
1398 1418 3.127533 GAATGGCGGCAGCTTCGT 61.128 61.111 19.29 0.00 44.37 3.85
1474 1494 3.462678 GCGAGGAGGAGGTGACCC 61.463 72.222 0.00 0.00 0.00 4.46
1560 1580 2.164663 CGCCACATACGTGACGCAT 61.165 57.895 4.25 0.00 46.80 4.73
1635 1672 0.669077 ACTATGTCGATGAGGCGGTC 59.331 55.000 0.00 0.00 0.00 4.79
1674 1711 1.228124 CTTGCCCGACCTGTTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
1757 1794 1.438651 GTGCTAGCGTTCATTGGACA 58.561 50.000 10.77 0.00 0.00 4.02
1852 1895 0.602562 GAGGATCCAGAGAGATGGCG 59.397 60.000 15.82 0.00 40.41 5.69
1924 1967 0.109179 TCATTTTGACGCATGCTGCC 60.109 50.000 17.13 5.03 41.12 4.85
1925 1968 0.108992 CATTTTGACGCATGCTGCCT 60.109 50.000 17.13 0.00 41.12 4.75
1926 1969 0.604578 ATTTTGACGCATGCTGCCTT 59.395 45.000 17.13 0.00 41.12 4.35
1927 1970 1.242989 TTTTGACGCATGCTGCCTTA 58.757 45.000 17.13 0.00 41.12 2.69
1928 1971 1.242989 TTTGACGCATGCTGCCTTAA 58.757 45.000 17.13 0.00 41.12 1.85
1931 1974 0.097674 GACGCATGCTGCCTTAACTG 59.902 55.000 17.13 0.00 41.12 3.16
1932 1975 0.606401 ACGCATGCTGCCTTAACTGT 60.606 50.000 17.13 0.00 41.12 3.55
1933 1976 0.179181 CGCATGCTGCCTTAACTGTG 60.179 55.000 17.13 0.00 41.12 3.66
1935 1978 1.747355 GCATGCTGCCTTAACTGTGAT 59.253 47.619 11.37 0.00 37.42 3.06
1938 1981 4.756642 GCATGCTGCCTTAACTGTGATATA 59.243 41.667 11.37 0.00 37.42 0.86
1939 1982 5.334414 GCATGCTGCCTTAACTGTGATATAC 60.334 44.000 11.37 0.00 37.42 1.47
1940 1983 5.614324 TGCTGCCTTAACTGTGATATACT 57.386 39.130 0.00 0.00 0.00 2.12
1942 1985 7.303182 TGCTGCCTTAACTGTGATATACTAT 57.697 36.000 0.00 0.00 0.00 2.12
1943 1986 8.417273 TGCTGCCTTAACTGTGATATACTATA 57.583 34.615 0.00 0.00 0.00 1.31
1944 1987 9.035890 TGCTGCCTTAACTGTGATATACTATAT 57.964 33.333 0.00 0.00 0.00 0.86
1945 1988 9.307121 GCTGCCTTAACTGTGATATACTATATG 57.693 37.037 0.00 0.00 0.00 1.78
1947 1990 9.035890 TGCCTTAACTGTGATATACTATATGCT 57.964 33.333 0.00 0.00 0.00 3.79
1954 1997 8.815189 ACTGTGATATACTATATGCTACGTACG 58.185 37.037 15.01 15.01 0.00 3.67
1955 1998 8.707938 TGTGATATACTATATGCTACGTACGT 57.292 34.615 25.98 25.98 0.00 3.57
1960 2159 5.274881 ACTATATGCTACGTACGTACAGC 57.725 43.478 28.10 28.10 32.15 4.40
1965 2164 2.094258 TGCTACGTACGTACAGCAGTAC 59.906 50.000 31.71 9.24 45.67 2.73
1972 2171 5.163723 ACGTACGTACAGCAGTACATATGTT 60.164 40.000 21.41 0.00 42.97 2.71
1995 2614 4.585955 ATTCTATCGTAGCAATCCACGT 57.414 40.909 0.00 0.00 39.18 4.49
1998 2617 4.357142 TCTATCGTAGCAATCCACGTTTC 58.643 43.478 0.00 0.00 39.18 2.78
1999 2618 2.442212 TCGTAGCAATCCACGTTTCA 57.558 45.000 0.00 0.00 39.18 2.69
2000 2619 2.063266 TCGTAGCAATCCACGTTTCAC 58.937 47.619 0.00 0.00 39.18 3.18
2002 2621 2.147958 GTAGCAATCCACGTTTCACCA 58.852 47.619 0.00 0.00 0.00 4.17
2003 2622 1.238439 AGCAATCCACGTTTCACCAG 58.762 50.000 0.00 0.00 0.00 4.00
2004 2623 0.387239 GCAATCCACGTTTCACCAGC 60.387 55.000 0.00 0.00 0.00 4.85
2005 2624 0.950836 CAATCCACGTTTCACCAGCA 59.049 50.000 0.00 0.00 0.00 4.41
2006 2625 1.069022 CAATCCACGTTTCACCAGCAG 60.069 52.381 0.00 0.00 0.00 4.24
2007 2626 1.237285 ATCCACGTTTCACCAGCAGC 61.237 55.000 0.00 0.00 0.00 5.25
2011 2633 0.814457 ACGTTTCACCAGCAGCAAAA 59.186 45.000 0.00 0.00 0.00 2.44
2032 2654 0.598065 ACACAGGATCTTTTTGCCGC 59.402 50.000 0.00 0.00 0.00 6.53
2056 2678 2.202932 CGAGGCGCCAGCTACAAT 60.203 61.111 31.54 4.27 44.37 2.71
2057 2679 1.815421 CGAGGCGCCAGCTACAATT 60.815 57.895 31.54 3.33 44.37 2.32
2075 2697 2.514592 CTACAGTGGGCCATGGCG 60.515 66.667 29.90 18.12 43.06 5.69
2086 2708 2.711311 CATGGCGGAGTTGATGCG 59.289 61.111 0.00 0.00 46.94 4.73
2093 2715 2.464459 GGAGTTGATGCGAAGGCCG 61.464 63.158 0.00 0.00 38.85 6.13
2097 2719 3.604129 TTGATGCGAAGGCCGAGCA 62.604 57.895 21.43 21.43 45.46 4.26
2098 2720 3.567797 GATGCGAAGGCCGAGCAC 61.568 66.667 21.57 13.33 44.12 4.40
2129 2751 1.152030 ACAAGCTGAGGTCAGGGGA 60.152 57.895 9.03 0.00 43.94 4.81
2132 2754 3.005539 GCTGAGGTCAGGGGAGCA 61.006 66.667 9.03 0.00 43.97 4.26
2141 2763 1.152610 CAGGGGAGCATTCATGGGG 60.153 63.158 0.00 0.00 0.00 4.96
2146 2768 0.903942 GGAGCATTCATGGGGCAAAA 59.096 50.000 0.00 0.00 0.00 2.44
2172 2794 2.907917 CCGAGGAGGGTCTAGGCG 60.908 72.222 0.00 0.00 35.97 5.52
2177 2799 2.494530 GGAGGGTCTAGGCGAGCTG 61.495 68.421 0.00 0.00 40.01 4.24
2237 2859 4.023137 CCACCTGGGCCATTCTTG 57.977 61.111 6.72 1.46 0.00 3.02
2245 2867 2.285024 GGCCATTCTTGCTGCCCAA 61.285 57.895 0.00 0.00 37.94 4.12
2261 2883 1.521450 CCAAGCAGTGCCAGGAACAG 61.521 60.000 16.38 0.00 0.00 3.16
2267 2889 0.395586 AGTGCCAGGAACAGTGCAAA 60.396 50.000 0.00 0.00 35.16 3.68
2270 2892 1.761784 TGCCAGGAACAGTGCAAAATT 59.238 42.857 0.00 0.00 0.00 1.82
2279 2901 2.484264 ACAGTGCAAAATTCTCGGCTAC 59.516 45.455 0.00 0.00 0.00 3.58
2285 2907 1.625616 AAATTCTCGGCTACGACGTG 58.374 50.000 11.56 1.81 45.59 4.49
2303 2925 4.296265 CCCAAAGGCACTACGGTC 57.704 61.111 0.00 0.00 38.49 4.79
2306 2928 0.673644 CCAAAGGCACTACGGTCCTG 60.674 60.000 0.00 0.00 38.49 3.86
2307 2929 1.003718 AAAGGCACTACGGTCCTGC 60.004 57.895 2.16 2.16 38.49 4.85
2327 2949 2.486907 GCTGAATGCTTGGGCTATCTCT 60.487 50.000 0.00 0.00 39.59 3.10
2357 2979 1.411612 GAATACTGGGACGAACCGGAT 59.588 52.381 9.46 0.00 39.34 4.18
2366 2988 2.086510 CGAACCGGATGCATTCGTT 58.913 52.632 25.21 18.47 40.19 3.85
2369 2991 1.366111 AACCGGATGCATTCGTTCCG 61.366 55.000 25.21 20.90 42.91 4.30
2378 3000 3.390135 TGCATTCGTTCCGGATAGATTC 58.610 45.455 4.15 1.27 0.00 2.52
2379 3001 3.069586 TGCATTCGTTCCGGATAGATTCT 59.930 43.478 4.15 0.00 0.00 2.40
2383 3005 2.135933 CGTTCCGGATAGATTCTTGGC 58.864 52.381 4.15 0.00 0.00 4.52
2387 3009 2.563179 TCCGGATAGATTCTTGGCTAGC 59.437 50.000 6.04 6.04 0.00 3.42
2388 3010 2.600731 CGGATAGATTCTTGGCTAGCG 58.399 52.381 9.00 0.00 0.00 4.26
2389 3011 2.342179 GGATAGATTCTTGGCTAGCGC 58.658 52.381 9.00 0.00 0.00 5.92
2392 3014 0.528684 AGATTCTTGGCTAGCGCGAC 60.529 55.000 12.10 0.04 36.88 5.19
2399 3021 1.101635 TGGCTAGCGCGACAGACTAT 61.102 55.000 12.10 0.00 36.88 2.12
2550 3172 1.951209 TGGCACTTCTCCTGGTGATA 58.049 50.000 0.00 0.00 35.69 2.15
2740 3364 8.815141 TGTATCTTTGAATTCCAATTGTGTTG 57.185 30.769 4.43 0.00 34.23 3.33
2741 3365 8.420222 TGTATCTTTGAATTCCAATTGTGTTGT 58.580 29.630 4.43 0.00 34.23 3.32
2742 3366 7.718272 ATCTTTGAATTCCAATTGTGTTGTG 57.282 32.000 4.43 0.00 34.23 3.33
2743 3367 6.638610 TCTTTGAATTCCAATTGTGTTGTGT 58.361 32.000 4.43 0.00 34.23 3.72
2744 3368 7.102346 TCTTTGAATTCCAATTGTGTTGTGTT 58.898 30.769 4.43 0.00 34.23 3.32
2745 3369 7.605691 TCTTTGAATTCCAATTGTGTTGTGTTT 59.394 29.630 4.43 0.00 34.23 2.83
2746 3370 7.678947 TTGAATTCCAATTGTGTTGTGTTTT 57.321 28.000 4.43 0.00 0.00 2.43
3188 3812 2.592308 GCCAGGCCCAGGTCTTAG 59.408 66.667 13.03 0.00 0.00 2.18
3200 3824 6.374613 GGCCCAGGTCTTAGCATATAAATTAC 59.625 42.308 0.00 0.00 0.00 1.89
3225 3849 2.774007 GCATGTTGTCACTTGCGATAC 58.226 47.619 0.00 0.00 42.38 2.24
3226 3850 2.159430 GCATGTTGTCACTTGCGATACA 59.841 45.455 0.00 0.00 42.38 2.29
3227 3851 3.181507 GCATGTTGTCACTTGCGATACAT 60.182 43.478 0.00 0.00 42.38 2.29
3228 3852 4.672542 GCATGTTGTCACTTGCGATACATT 60.673 41.667 0.00 0.00 42.38 2.71
3305 3929 7.305813 TGGGAGAAACAGTAGTGTGTATTTA 57.694 36.000 3.39 0.00 36.84 1.40
3348 3980 1.151221 TGCAGAACCCTGTGTGCAT 59.849 52.632 0.00 0.00 40.93 3.96
3373 4005 6.126997 TGCCGAGAAGGAACATTTAGGTTATA 60.127 38.462 0.00 0.00 45.00 0.98
3380 4012 8.502105 AAGGAACATTTAGGTTATAGGTTTCG 57.498 34.615 0.00 0.00 0.00 3.46
3385 4017 0.538118 AGGTTATAGGTTTCGCCGCA 59.462 50.000 0.00 0.00 43.70 5.69
3402 4034 3.313526 GCCGCATGTGAAGTAATCAATCT 59.686 43.478 8.11 0.00 40.50 2.40
3404 4036 4.571984 CCGCATGTGAAGTAATCAATCTGA 59.428 41.667 8.11 0.00 40.50 3.27
3461 4093 2.058125 TTGTTAGGACAAGGCCCGCA 62.058 55.000 0.00 0.00 40.71 5.69
3523 4183 6.980593 TGTGGTATGTCTTTTCTTTCCAATG 58.019 36.000 0.00 0.00 0.00 2.82
3540 4200 5.863965 TCCAATGTTCAAGCCATCGATATA 58.136 37.500 0.00 0.00 0.00 0.86
3564 4224 3.671716 ACAACCGGAGTTAATTCCACTC 58.328 45.455 9.46 8.59 40.12 3.51
3638 4298 0.768221 TGGGAGTGAGCTGGGTCTTT 60.768 55.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.496840 CGTATGTGGTCTATGCTACAACGA 60.497 45.833 0.00 0.00 36.99 3.85
72 74 7.347222 TGCTTCTCCTCTATAGGTTATTTTCCA 59.653 37.037 0.00 0.00 44.09 3.53
86 88 6.716934 AACGATAAAGATGCTTCTCCTCTA 57.283 37.500 2.09 0.00 0.00 2.43
115 117 6.348213 GCTTTGGCTAAGTAGAAACGATTTGA 60.348 38.462 10.28 0.00 36.19 2.69
130 132 5.579511 GTCTTACTATTGTCGCTTTGGCTAA 59.420 40.000 0.00 0.00 36.09 3.09
144 146 2.829720 TGGGAGTGTGCGTCTTACTATT 59.170 45.455 0.00 0.00 0.00 1.73
153 155 1.198759 ATAAGGGTGGGAGTGTGCGT 61.199 55.000 0.00 0.00 0.00 5.24
156 158 2.238646 TGCTAATAAGGGTGGGAGTGTG 59.761 50.000 0.00 0.00 0.00 3.82
193 195 2.681344 GGTCATTGGTTGGACGGTATTC 59.319 50.000 0.00 0.00 34.87 1.75
220 222 3.013921 ACGCCCATAAGTGTTACCAATG 58.986 45.455 0.00 0.00 0.00 2.82
226 228 7.042590 CGAATTTGTATACGCCCATAAGTGTTA 60.043 37.037 0.00 0.00 0.00 2.41
251 253 8.830580 ACTTGATTAGTCATTCAAATACCATCG 58.169 33.333 0.00 0.00 33.56 3.84
263 265 5.647589 TCGCGTTCTACTTGATTAGTCATT 58.352 37.500 5.77 0.00 38.33 2.57
270 272 7.124347 TGTTAATTTCGCGTTCTACTTGATT 57.876 32.000 5.77 0.00 0.00 2.57
272 274 6.715344 ATGTTAATTTCGCGTTCTACTTGA 57.285 33.333 5.77 0.00 0.00 3.02
275 277 8.470040 TTCTAATGTTAATTTCGCGTTCTACT 57.530 30.769 5.77 0.00 0.00 2.57
291 293 9.533253 CAATCAAACACCTCTTTTTCTAATGTT 57.467 29.630 0.00 0.00 0.00 2.71
292 294 8.695456 ACAATCAAACACCTCTTTTTCTAATGT 58.305 29.630 0.00 0.00 0.00 2.71
293 295 9.185192 GACAATCAAACACCTCTTTTTCTAATG 57.815 33.333 0.00 0.00 0.00 1.90
294 296 9.136323 AGACAATCAAACACCTCTTTTTCTAAT 57.864 29.630 0.00 0.00 0.00 1.73
295 297 8.519799 AGACAATCAAACACCTCTTTTTCTAA 57.480 30.769 0.00 0.00 0.00 2.10
297 299 6.238484 CGAGACAATCAAACACCTCTTTTTCT 60.238 38.462 0.00 0.00 0.00 2.52
331 334 5.041287 GGAGGTAAGAAGTGTTGTTTTTGC 58.959 41.667 0.00 0.00 0.00 3.68
351 354 0.037303 ATGACACAACTGGCCAGGAG 59.963 55.000 35.42 27.69 0.00 3.69
365 368 2.254546 AAAGACAACCTCGCATGACA 57.745 45.000 0.00 0.00 0.00 3.58
373 376 4.893424 TGTGCTAACAAAAGACAACCTC 57.107 40.909 0.00 0.00 31.82 3.85
385 388 3.151554 TCGTAGAGGAGTTGTGCTAACA 58.848 45.455 7.08 0.00 0.00 2.41
446 449 7.964559 CGATGAGCAATAACAAGAAAATCTGAA 59.035 33.333 0.00 0.00 0.00 3.02
469 477 4.320057 CGCTTCGTATTCTAAGGTACCGAT 60.320 45.833 6.18 2.06 0.00 4.18
479 487 5.116069 TGTATCATGCGCTTCGTATTCTA 57.884 39.130 9.73 0.00 28.35 2.10
485 493 3.004839 ACTCTATGTATCATGCGCTTCGT 59.995 43.478 9.73 0.00 0.00 3.85
488 496 4.862902 AGACTCTATGTATCATGCGCTT 57.137 40.909 9.73 0.00 0.00 4.68
539 548 3.104512 AGGTCAGGATATGTTTCGGTGA 58.895 45.455 0.00 0.00 0.00 4.02
542 551 3.623060 CACAAGGTCAGGATATGTTTCGG 59.377 47.826 0.00 0.00 0.00 4.30
601 610 3.135712 TGGCACCCGACTTATGTCATAAT 59.864 43.478 5.74 0.00 43.06 1.28
602 611 2.502130 TGGCACCCGACTTATGTCATAA 59.498 45.455 9.22 5.19 43.06 1.90
603 612 2.112190 TGGCACCCGACTTATGTCATA 58.888 47.619 9.22 0.00 43.06 2.15
619 628 3.192422 CGTTCAGGTGGATTTAATTGGCA 59.808 43.478 0.00 0.00 0.00 4.92
625 634 6.568844 CGAATTTTCCGTTCAGGTGGATTTAA 60.569 38.462 0.00 0.00 41.99 1.52
626 635 5.106475 CGAATTTTCCGTTCAGGTGGATTTA 60.106 40.000 0.00 0.00 41.99 1.40
642 652 1.950216 GCTCATCCCCTCCGAATTTTC 59.050 52.381 0.00 0.00 0.00 2.29
645 655 0.471617 CAGCTCATCCCCTCCGAATT 59.528 55.000 0.00 0.00 0.00 2.17
688 698 6.073447 TCCCCATAACATTGTCACAATACT 57.927 37.500 1.72 0.00 0.00 2.12
690 700 5.192722 TCCTCCCCATAACATTGTCACAATA 59.807 40.000 1.72 0.00 0.00 1.90
731 741 5.104151 TCACCAACATGGCTATATCTTTGGA 60.104 40.000 14.83 0.00 42.67 3.53
740 750 0.921896 AGGCTCACCAACATGGCTAT 59.078 50.000 0.00 0.00 42.67 2.97
786 796 2.222886 CCGAAGATCAAGCAATCACACG 60.223 50.000 0.00 0.00 0.00 4.49
800 810 2.099263 ACGTTGTCGATCATCCGAAGAT 59.901 45.455 0.00 0.00 40.51 2.40
807 817 0.924090 GAGGCACGTTGTCGATCATC 59.076 55.000 0.00 0.00 40.62 2.92
814 824 3.617263 AGAATAATTCGAGGCACGTTGTC 59.383 43.478 3.89 0.00 43.13 3.18
819 829 3.186909 TGTCAGAATAATTCGAGGCACG 58.813 45.455 0.00 0.00 44.09 5.34
968 982 3.035363 TCTGTATTGTCAGCCGGGATTA 58.965 45.455 2.18 0.00 35.63 1.75
975 989 3.954904 TCTCCTACTCTGTATTGTCAGCC 59.045 47.826 0.00 0.00 35.63 4.85
978 992 6.266330 CCATGATCTCCTACTCTGTATTGTCA 59.734 42.308 0.00 0.00 0.00 3.58
994 1008 2.554142 TGCATCGTTGTCCATGATCTC 58.446 47.619 0.00 0.00 0.00 2.75
1186 1206 0.036010 CCATGGCGTTGAGAGAGGTT 60.036 55.000 0.00 0.00 0.00 3.50
1272 1292 2.419324 GTCGTACGTCTTGGTGATCTCT 59.581 50.000 16.05 0.00 0.00 3.10
1395 1415 2.625314 CTCCAGGATGCAGATCTTACGA 59.375 50.000 0.00 0.00 31.97 3.43
1398 1418 2.367894 CAGCTCCAGGATGCAGATCTTA 59.632 50.000 11.98 0.00 31.97 2.10
1506 1526 3.054503 ACCACCTCCGACGACTCG 61.055 66.667 0.00 0.00 39.83 4.18
1510 1530 2.567497 GGTTCACCACCTCCGACGA 61.567 63.158 0.00 0.00 43.29 4.20
1511 1531 2.048503 GGTTCACCACCTCCGACG 60.049 66.667 0.00 0.00 43.29 5.12
1519 1539 3.003480 GCATCTTACTCAGGTTCACCAC 58.997 50.000 0.00 0.00 38.89 4.16
1520 1540 2.906389 AGCATCTTACTCAGGTTCACCA 59.094 45.455 0.00 0.00 38.89 4.17
1521 1541 3.526534 GAGCATCTTACTCAGGTTCACC 58.473 50.000 0.00 0.00 34.18 4.02
1560 1580 4.986645 ATGCAGTGCACCGTCGCA 62.987 61.111 22.44 17.41 43.04 5.10
1635 1672 3.966026 GAAGCCACCGACGACCTCG 62.966 68.421 0.00 0.00 46.33 4.63
1674 1711 2.716244 CGCACTAGCCTCGACGAT 59.284 61.111 0.00 0.00 37.52 3.73
1757 1794 1.334509 CGAGATGCTCATCGATGACGT 60.335 52.381 23.99 19.91 42.48 4.34
1852 1895 0.325272 GTGAGGGGGAACTGAAGGTC 59.675 60.000 0.00 0.00 0.00 3.85
1928 1971 8.815189 CGTACGTAGCATATAGTATATCACAGT 58.185 37.037 7.22 1.28 0.00 3.55
1932 1975 9.801873 TGTACGTACGTAGCATATAGTATATCA 57.198 33.333 27.48 13.73 0.00 2.15
1935 1978 7.759433 TGCTGTACGTACGTAGCATATAGTATA 59.241 37.037 31.71 13.56 30.36 1.47
1938 1981 4.751600 TGCTGTACGTACGTAGCATATAGT 59.248 41.667 31.71 7.26 30.36 2.12
1939 1982 5.107182 ACTGCTGTACGTACGTAGCATATAG 60.107 44.000 33.92 26.56 33.43 1.31
1940 1983 4.751600 ACTGCTGTACGTACGTAGCATATA 59.248 41.667 33.92 18.69 33.43 0.86
1942 1985 2.938451 ACTGCTGTACGTACGTAGCATA 59.062 45.455 33.92 19.54 33.43 3.14
1943 1986 1.741706 ACTGCTGTACGTACGTAGCAT 59.258 47.619 33.92 24.23 33.43 3.79
1944 1987 1.159285 ACTGCTGTACGTACGTAGCA 58.841 50.000 32.47 32.47 33.05 3.49
1945 1988 2.698472 GTACTGCTGTACGTACGTAGC 58.302 52.381 28.10 28.10 39.49 3.58
1957 2000 9.411801 ACGATAGAATAAACATATGTACTGCTG 57.588 33.333 9.21 0.00 41.38 4.41
1985 2604 0.387239 GCTGGTGAAACGTGGATTGC 60.387 55.000 0.00 0.00 38.12 3.56
2011 2633 2.545742 GCGGCAAAAAGATCCTGTGTTT 60.546 45.455 0.00 0.00 0.00 2.83
2022 2644 4.419939 GCTCCCCGCGGCAAAAAG 62.420 66.667 22.85 12.56 0.00 2.27
2045 2667 2.939103 CCACTGTAGAATTGTAGCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
2050 2672 3.627395 TGGCCCACTGTAGAATTGTAG 57.373 47.619 0.00 0.00 0.00 2.74
2051 2673 3.371487 CCATGGCCCACTGTAGAATTGTA 60.371 47.826 0.00 0.00 0.00 2.41
2056 2678 1.302949 GCCATGGCCCACTGTAGAA 59.697 57.895 27.24 0.00 34.56 2.10
2057 2679 2.998097 GCCATGGCCCACTGTAGA 59.002 61.111 27.24 0.00 34.56 2.59
2075 2697 2.464459 CGGCCTTCGCATCAACTCC 61.464 63.158 0.00 0.00 36.38 3.85
2086 2708 2.045926 ACATGGTGCTCGGCCTTC 60.046 61.111 0.00 0.00 0.00 3.46
2089 2711 1.227380 CTAGACATGGTGCTCGGCC 60.227 63.158 0.00 0.00 0.00 6.13
2090 2712 1.227380 CCTAGACATGGTGCTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
2093 2715 0.462759 GTGCCCTAGACATGGTGCTC 60.463 60.000 0.00 0.00 0.00 4.26
2097 2719 0.035056 GCTTGTGCCCTAGACATGGT 60.035 55.000 0.00 0.00 0.00 3.55
2098 2720 0.254178 AGCTTGTGCCCTAGACATGG 59.746 55.000 0.00 0.00 40.80 3.66
2099 2721 1.065926 TCAGCTTGTGCCCTAGACATG 60.066 52.381 0.00 0.00 40.80 3.21
2129 2751 1.941377 TCTTTTGCCCCATGAATGCT 58.059 45.000 0.00 0.00 0.00 3.79
2132 2754 2.906568 ACCTTCTTTTGCCCCATGAAT 58.093 42.857 0.00 0.00 0.00 2.57
2141 2763 2.742589 CTCCTCGGTTACCTTCTTTTGC 59.257 50.000 0.00 0.00 0.00 3.68
2146 2768 0.412640 ACCCTCCTCGGTTACCTTCT 59.587 55.000 0.00 0.00 29.19 2.85
2172 2794 2.354259 ACAATGCAAGTAGCTCAGCTC 58.646 47.619 0.00 0.00 45.94 4.09
2177 2799 6.293298 CCTTGATGATACAATGCAAGTAGCTC 60.293 42.308 15.82 11.90 45.94 4.09
2220 2842 2.353610 GCAAGAATGGCCCAGGTGG 61.354 63.158 0.00 0.00 37.09 4.61
2243 2865 0.820891 ACTGTTCCTGGCACTGCTTG 60.821 55.000 0.00 0.00 0.00 4.01
2245 2867 1.228063 CACTGTTCCTGGCACTGCT 60.228 57.895 0.00 0.00 0.00 4.24
2247 2869 1.102809 TTGCACTGTTCCTGGCACTG 61.103 55.000 2.07 2.07 35.74 3.66
2249 2871 0.459489 TTTTGCACTGTTCCTGGCAC 59.541 50.000 0.00 0.00 35.74 5.01
2255 2877 2.922335 GCCGAGAATTTTGCACTGTTCC 60.922 50.000 0.00 0.00 0.00 3.62
2261 2883 1.730064 TCGTAGCCGAGAATTTTGCAC 59.270 47.619 0.00 0.00 38.40 4.57
2267 2889 0.801067 GCACGTCGTAGCCGAGAATT 60.801 55.000 0.00 0.00 45.26 2.17
2270 2892 3.807538 GGCACGTCGTAGCCGAGA 61.808 66.667 18.57 0.00 45.26 4.04
2295 2917 0.108138 GCATTCAGCAGGACCGTAGT 60.108 55.000 0.00 0.00 44.79 2.73
2306 2928 1.878734 GAGATAGCCCAAGCATTCAGC 59.121 52.381 0.00 0.00 43.56 4.26
2307 2929 3.488778 AGAGATAGCCCAAGCATTCAG 57.511 47.619 0.00 0.00 43.56 3.02
2327 2949 0.105349 CCCAGTATTCCGGGTCCCTA 60.105 60.000 6.29 0.00 37.70 3.53
2366 2988 2.563179 GCTAGCCAAGAATCTATCCGGA 59.437 50.000 6.61 6.61 0.00 5.14
2369 2991 2.342179 GCGCTAGCCAAGAATCTATCC 58.658 52.381 9.66 0.00 37.42 2.59
2378 3000 2.161486 GTCTGTCGCGCTAGCCAAG 61.161 63.158 9.66 0.42 41.18 3.61
2379 3001 1.310216 TAGTCTGTCGCGCTAGCCAA 61.310 55.000 9.66 0.00 41.18 4.52
2383 3005 3.556513 CCTTTATAGTCTGTCGCGCTAG 58.443 50.000 5.56 1.50 0.00 3.42
2387 3009 2.203800 TGCCTTTATAGTCTGTCGCG 57.796 50.000 0.00 0.00 0.00 5.87
2388 3010 3.307242 CAGTTGCCTTTATAGTCTGTCGC 59.693 47.826 0.00 0.00 0.00 5.19
2389 3011 3.307242 GCAGTTGCCTTTATAGTCTGTCG 59.693 47.826 0.00 0.00 34.31 4.35
2392 3014 5.412594 TCAAAGCAGTTGCCTTTATAGTCTG 59.587 40.000 0.00 0.00 43.38 3.51
2399 3021 6.648879 ATAAACTCAAAGCAGTTGCCTTTA 57.351 33.333 0.00 0.00 43.38 1.85
2550 3172 3.371273 CCCATGGTCTCTGTCATGTCAAT 60.371 47.826 11.73 0.00 39.12 2.57
2608 3230 1.107114 CTGTAGGTGGAGAGTCGCAT 58.893 55.000 0.00 0.00 0.00 4.73
2612 3234 0.820871 CAGGCTGTAGGTGGAGAGTC 59.179 60.000 6.28 0.00 0.00 3.36
2714 3338 9.426837 CAACACAATTGGAATTCAAAGATACAT 57.573 29.630 10.83 0.00 39.05 2.29
3146 3770 9.353999 GCCACCAGAGTAGTTTATTTTAATTTG 57.646 33.333 0.00 0.00 0.00 2.32
3147 3771 8.528643 GGCCACCAGAGTAGTTTATTTTAATTT 58.471 33.333 0.00 0.00 0.00 1.82
3150 3774 6.544650 TGGCCACCAGAGTAGTTTATTTTAA 58.455 36.000 0.00 0.00 0.00 1.52
3235 3859 9.032420 GTGCTAGTACTTAATAATGTCCTTCAC 57.968 37.037 0.00 0.00 0.00 3.18
3267 3891 1.977594 CTCCCATTACAACGCACGGC 61.978 60.000 0.00 0.00 0.00 5.68
3274 3898 5.995897 ACACTACTGTTTCTCCCATTACAAC 59.004 40.000 0.00 0.00 0.00 3.32
3321 3945 4.080356 ACACAGGGTTCTGCATACACATAT 60.080 41.667 4.41 0.00 44.59 1.78
3348 3980 2.304761 ACCTAAATGTTCCTTCTCGGCA 59.695 45.455 0.00 0.00 0.00 5.69
3373 4005 1.577328 CTTCACATGCGGCGAAACCT 61.577 55.000 12.98 0.00 35.61 3.50
3380 4012 3.313526 AGATTGATTACTTCACATGCGGC 59.686 43.478 0.00 0.00 32.84 6.53
3434 4066 3.386726 GCCTTGTCCTAACAAAACCCTTT 59.613 43.478 0.00 0.00 44.53 3.11
3481 4113 2.747446 CACAAAATCCCCTCGAACGAAT 59.253 45.455 0.00 0.00 0.00 3.34
3485 4117 1.905637 ACCACAAAATCCCCTCGAAC 58.094 50.000 0.00 0.00 0.00 3.95
3486 4118 3.009695 ACATACCACAAAATCCCCTCGAA 59.990 43.478 0.00 0.00 0.00 3.71
3523 4183 6.145696 GGTTGTACTATATCGATGGCTTGAAC 59.854 42.308 8.54 3.17 0.00 3.18
3540 4200 4.285260 AGTGGAATTAACTCCGGTTGTACT 59.715 41.667 0.00 0.00 38.44 2.73
3564 4224 6.127758 TGGATCAATGAACGGAAAAATAGTGG 60.128 38.462 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.