Multiple sequence alignment - TraesCS7D01G116700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G116700 chr7D 100.000 3661 0 0 1 3661 71840021 71836361 0.000000e+00 6761.0
1 TraesCS7D01G116700 chr7D 73.103 435 88 10 1091 1521 426820601 426821010 1.070000e-25 128.0
2 TraesCS7D01G116700 chr7D 95.833 48 2 0 3190 3237 46948637 46948684 1.090000e-10 78.7
3 TraesCS7D01G116700 chrUn 95.158 1900 73 11 728 2615 82570561 82568669 0.000000e+00 2981.0
4 TraesCS7D01G116700 chrUn 92.936 1911 89 22 772 2678 84310784 84308916 0.000000e+00 2739.0
5 TraesCS7D01G116700 chrUn 82.933 750 114 11 1680 2419 9331500 9330755 0.000000e+00 664.0
6 TraesCS7D01G116700 chrUn 90.278 216 13 4 3026 3233 84307674 84307459 3.600000e-70 276.0
7 TraesCS7D01G116700 chrUn 73.260 546 107 31 1838 2371 103930367 103929849 2.930000e-36 163.0
8 TraesCS7D01G116700 chrUn 72.000 550 119 28 1832 2371 104016312 104016836 2.970000e-26 130.0
9 TraesCS7D01G116700 chrUn 95.652 69 3 0 2584 2652 84307938 84307870 1.070000e-20 111.0
10 TraesCS7D01G116700 chr7B 92.382 1851 92 25 837 2680 14726704 14728512 0.000000e+00 2591.0
11 TraesCS7D01G116700 chr7B 87.517 737 73 9 1 720 652447187 652446453 0.000000e+00 833.0
12 TraesCS7D01G116700 chr7B 86.885 244 28 4 2770 3009 88055397 88055640 1.680000e-68 270.0
13 TraesCS7D01G116700 chr7B 89.032 155 16 1 2767 2920 28632197 28632351 1.340000e-44 191.0
14 TraesCS7D01G116700 chr7B 84.091 176 25 3 3185 3358 14771249 14771423 2.260000e-37 167.0
15 TraesCS7D01G116700 chr7B 98.413 63 1 0 772 834 14722809 14722871 1.070000e-20 111.0
16 TraesCS7D01G116700 chr4D 94.005 734 29 10 1 720 354035144 354035876 0.000000e+00 1098.0
17 TraesCS7D01G116700 chr4D 88.980 735 65 10 1 720 480869942 480869209 0.000000e+00 894.0
18 TraesCS7D01G116700 chr4D 86.517 267 29 6 2768 3030 460656055 460655792 1.660000e-73 287.0
19 TraesCS7D01G116700 chr4D 86.517 267 29 6 2768 3030 460658328 460658065 1.660000e-73 287.0
20 TraesCS7D01G116700 chr4D 86.517 267 29 6 2768 3030 460662664 460662401 1.660000e-73 287.0
21 TraesCS7D01G116700 chr4D 86.517 267 29 6 2768 3030 460664807 460664544 1.660000e-73 287.0
22 TraesCS7D01G116700 chr4D 95.833 48 2 0 3190 3237 497148890 497148937 1.090000e-10 78.7
23 TraesCS7D01G116700 chr4A 90.748 735 53 5 1 720 447056790 447056056 0.000000e+00 966.0
24 TraesCS7D01G116700 chr2B 89.891 732 58 11 3 719 106769245 106769975 0.000000e+00 928.0
25 TraesCS7D01G116700 chr6A 87.330 734 78 6 1 720 90207912 90208644 0.000000e+00 826.0
26 TraesCS7D01G116700 chr6A 73.048 538 110 25 1844 2371 31364121 31363609 1.360000e-34 158.0
27 TraesCS7D01G116700 chr6A 72.545 550 116 26 1832 2371 31391163 31391687 2.950000e-31 147.0
28 TraesCS7D01G116700 chr3A 85.734 736 89 11 1 720 654234728 654235463 0.000000e+00 763.0
29 TraesCS7D01G116700 chr3A 83.627 739 88 20 1 720 621521108 621521832 0.000000e+00 664.0
30 TraesCS7D01G116700 chr7A 89.304 589 47 5 149 721 644088045 644088633 0.000000e+00 725.0
31 TraesCS7D01G116700 chr3D 84.153 732 91 19 7 720 481922983 481922259 0.000000e+00 686.0
32 TraesCS7D01G116700 chr5D 83.073 703 102 14 1 687 131491602 131492303 1.120000e-174 623.0
33 TraesCS7D01G116700 chr4B 89.683 252 22 4 2770 3017 67039785 67039534 5.900000e-83 318.0
34 TraesCS7D01G116700 chr2A 84.000 300 47 1 7 306 371043526 371043824 1.660000e-73 287.0
35 TraesCS7D01G116700 chr6B 78.846 208 38 6 2167 2371 56201559 56201763 6.380000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G116700 chr7D 71836361 71840021 3660 True 6761 6761 100.000000 1 3661 1 chr7D.!!$R1 3660
1 TraesCS7D01G116700 chrUn 82568669 82570561 1892 True 2981 2981 95.158000 728 2615 1 chrUn.!!$R2 1887
2 TraesCS7D01G116700 chrUn 84307459 84310784 3325 True 1042 2739 92.955333 772 3233 3 chrUn.!!$R4 2461
3 TraesCS7D01G116700 chrUn 9330755 9331500 745 True 664 664 82.933000 1680 2419 1 chrUn.!!$R1 739
4 TraesCS7D01G116700 chr7B 14722809 14728512 5703 False 1351 2591 95.397500 772 2680 2 chr7B.!!$F4 1908
5 TraesCS7D01G116700 chr7B 652446453 652447187 734 True 833 833 87.517000 1 720 1 chr7B.!!$R1 719
6 TraesCS7D01G116700 chr4D 354035144 354035876 732 False 1098 1098 94.005000 1 720 1 chr4D.!!$F1 719
7 TraesCS7D01G116700 chr4D 480869209 480869942 733 True 894 894 88.980000 1 720 1 chr4D.!!$R1 719
8 TraesCS7D01G116700 chr4D 460655792 460658328 2536 True 287 287 86.517000 2768 3030 2 chr4D.!!$R2 262
9 TraesCS7D01G116700 chr4D 460662401 460664807 2406 True 287 287 86.517000 2768 3030 2 chr4D.!!$R3 262
10 TraesCS7D01G116700 chr4A 447056056 447056790 734 True 966 966 90.748000 1 720 1 chr4A.!!$R1 719
11 TraesCS7D01G116700 chr2B 106769245 106769975 730 False 928 928 89.891000 3 719 1 chr2B.!!$F1 716
12 TraesCS7D01G116700 chr6A 90207912 90208644 732 False 826 826 87.330000 1 720 1 chr6A.!!$F2 719
13 TraesCS7D01G116700 chr3A 654234728 654235463 735 False 763 763 85.734000 1 720 1 chr3A.!!$F2 719
14 TraesCS7D01G116700 chr3A 621521108 621521832 724 False 664 664 83.627000 1 720 1 chr3A.!!$F1 719
15 TraesCS7D01G116700 chr7A 644088045 644088633 588 False 725 725 89.304000 149 721 1 chr7A.!!$F1 572
16 TraesCS7D01G116700 chr3D 481922259 481922983 724 True 686 686 84.153000 7 720 1 chr3D.!!$R1 713
17 TraesCS7D01G116700 chr5D 131491602 131492303 701 False 623 623 83.073000 1 687 1 chr5D.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 308 0.174389 TCTCTCTTGGTGCAGATCGC 59.826 55.0 0.0 3.07 42.89 4.58 F
1578 5436 0.026803 GATGGACGCATTCGCTTGAC 59.973 55.0 0.0 0.00 39.84 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 5494 0.458669 TTCCCAGCTCGACCGATAAC 59.541 55.0 0.00 0.0 0.00 1.89 R
3549 9025 0.037590 TGCGGTTAGGGCAAACTCAT 59.962 50.0 2.56 0.0 37.49 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.403493 GCTCTATCACTGACGCATCG 58.597 55.000 0.00 0.00 0.00 3.84
155 156 4.101448 GCCCTGCAGGATCGGTGT 62.101 66.667 34.91 0.00 38.24 4.16
198 199 1.956297 CCGTGGTTTACCTCACAACA 58.044 50.000 0.00 0.00 36.82 3.33
267 269 1.581447 GTTGCTTGCCCTTTCTCCG 59.419 57.895 0.00 0.00 0.00 4.63
306 308 0.174389 TCTCTCTTGGTGCAGATCGC 59.826 55.000 0.00 3.07 42.89 4.58
310 326 1.737735 CTTGGTGCAGATCGCGACA 60.738 57.895 12.93 0.75 46.97 4.35
312 328 3.188786 GGTGCAGATCGCGACACC 61.189 66.667 25.04 25.04 46.97 4.16
313 329 3.188786 GTGCAGATCGCGACACCC 61.189 66.667 12.93 0.67 46.97 4.61
318 334 2.813908 GATCGCGACACCCACACC 60.814 66.667 12.93 0.00 0.00 4.16
400 416 1.755179 AAACTCCATCATTGCCCTCG 58.245 50.000 0.00 0.00 0.00 4.63
602 619 1.054978 CCCCTACCCTAACTGCTCCC 61.055 65.000 0.00 0.00 0.00 4.30
661 681 2.086869 CTGTAGCCATCACCCTTTGTG 58.913 52.381 0.00 0.00 46.88 3.33
672 694 2.499693 CACCCTTTGTGTTTTTCACCCT 59.500 45.455 0.00 0.00 45.61 4.34
674 696 3.585289 ACCCTTTGTGTTTTTCACCCTTT 59.415 39.130 0.00 0.00 45.61 3.11
750 772 7.148018 TAGTACTAAACTCGGGTACCAATCTTG 60.148 40.741 15.35 0.00 44.92 3.02
766 788 0.745845 CTTGTCAATCCAGCTCGGGG 60.746 60.000 2.86 0.00 34.36 5.73
767 789 2.514824 GTCAATCCAGCTCGGGGC 60.515 66.667 0.00 0.00 42.19 5.80
769 791 2.045045 CAATCCAGCTCGGGGCAA 60.045 61.111 1.17 0.00 44.79 4.52
770 792 2.117156 CAATCCAGCTCGGGGCAAG 61.117 63.158 1.17 0.00 44.79 4.01
989 4847 3.625649 AGTCTTCTCCTCCATTTCTGC 57.374 47.619 0.00 0.00 0.00 4.26
990 4848 2.909006 AGTCTTCTCCTCCATTTCTGCA 59.091 45.455 0.00 0.00 0.00 4.41
994 4852 3.272574 TCTCCTCCATTTCTGCATGTC 57.727 47.619 0.00 0.00 0.00 3.06
1126 4984 1.375523 CTTCCCGTTCCCGTTCCTG 60.376 63.158 0.00 0.00 0.00 3.86
1423 5281 4.053067 GTCATCACCGACGTCGTC 57.947 61.111 33.49 15.51 37.74 4.20
1563 5421 3.443045 GCCCGTGCAAGGTGATGG 61.443 66.667 17.81 2.75 37.47 3.51
1564 5422 2.350895 CCCGTGCAAGGTGATGGA 59.649 61.111 17.81 0.00 0.00 3.41
1565 5423 2.040544 CCCGTGCAAGGTGATGGAC 61.041 63.158 17.81 0.00 38.18 4.02
1578 5436 0.026803 GATGGACGCATTCGCTTGAC 59.973 55.000 0.00 0.00 39.84 3.18
1587 5445 1.394917 CATTCGCTTGACTTCCCTTCG 59.605 52.381 0.00 0.00 0.00 3.79
1604 5462 4.342772 CCTTCGTCTATTCGCCATTTTTG 58.657 43.478 0.00 0.00 0.00 2.44
1632 5494 4.386652 CCAGCAAACAAATTCTTGGATTCG 59.613 41.667 0.00 0.00 36.82 3.34
1642 5504 3.074504 TCTTGGATTCGTTATCGGTCG 57.925 47.619 0.00 0.00 37.69 4.79
1784 5647 1.220206 CACGAGCAAGCTGGAGGAT 59.780 57.895 11.08 0.00 0.00 3.24
2009 5878 4.767255 CTCGGCTGGCTGGACACC 62.767 72.222 0.00 0.00 0.00 4.16
2270 6139 3.056328 GTGGGCGCCTTCTTCACC 61.056 66.667 28.56 7.32 0.00 4.02
2429 6298 2.837291 CGGCTGGAGAGAGGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
2567 6436 2.485426 CACGCATCTCAGTGATTTGGTT 59.515 45.455 0.00 0.00 40.56 3.67
2579 6448 4.217118 AGTGATTTGGTTGCTCTCATCAAC 59.783 41.667 0.00 0.00 42.13 3.18
2604 6473 9.613428 ACTCGTTCTGAATTTGAATTCCATATA 57.387 29.630 12.51 0.00 43.19 0.86
2630 6503 7.977818 TCTATCTGATAATGTTGCCACCTTAT 58.022 34.615 0.00 0.00 0.00 1.73
2649 6525 6.924060 ACCTTATATCGATTTGGTTTCTCTCG 59.076 38.462 1.71 0.00 0.00 4.04
2665 6541 5.477607 TCTCTCGTGTGGAATAAAGGAAA 57.522 39.130 0.00 0.00 0.00 3.13
2683 6559 4.205323 GAAACCTGTTTTCCAGTGTACG 57.795 45.455 0.00 0.00 39.74 3.67
2685 6561 0.511221 CCTGTTTTCCAGTGTACGCG 59.489 55.000 3.53 3.53 39.74 6.01
2686 6562 1.493772 CTGTTTTCCAGTGTACGCGA 58.506 50.000 15.93 0.00 36.37 5.87
2687 6563 1.455786 CTGTTTTCCAGTGTACGCGAG 59.544 52.381 15.93 0.00 36.37 5.03
2688 6564 3.115682 CTGTTTTCCAGTGTACGCGAGT 61.116 50.000 15.93 0.00 41.51 4.18
2689 6565 1.862827 GTTTTCCAGTGTACGCGAGTT 59.137 47.619 15.93 0.00 46.40 3.01
2690 6566 1.774639 TTTCCAGTGTACGCGAGTTC 58.225 50.000 15.93 0.00 46.40 3.01
2691 6567 0.669619 TTCCAGTGTACGCGAGTTCA 59.330 50.000 15.93 0.00 46.40 3.18
2696 6572 3.010088 TGTACGCGAGTTCACATCG 57.990 52.632 15.93 0.00 46.40 3.84
2697 6573 0.239082 TGTACGCGAGTTCACATCGT 59.761 50.000 15.93 0.00 46.40 3.73
2698 6574 1.334054 GTACGCGAGTTCACATCGTT 58.666 50.000 15.93 0.00 46.40 3.85
2699 6575 1.717645 GTACGCGAGTTCACATCGTTT 59.282 47.619 15.93 0.00 46.40 3.60
2700 6576 0.506932 ACGCGAGTTCACATCGTTTG 59.493 50.000 15.93 0.00 46.40 2.93
2701 6577 0.506932 CGCGAGTTCACATCGTTTGT 59.493 50.000 0.00 0.00 42.13 2.83
2702 6578 1.070843 CGCGAGTTCACATCGTTTGTT 60.071 47.619 0.00 0.00 42.13 2.83
2703 6579 2.598907 CGCGAGTTCACATCGTTTGTTT 60.599 45.455 0.00 0.00 42.13 2.83
2707 6583 4.493382 CGAGTTCACATCGTTTGTTTCACA 60.493 41.667 0.00 0.00 36.00 3.58
2708 6584 4.908736 AGTTCACATCGTTTGTTTCACAG 58.091 39.130 0.00 0.00 36.00 3.66
2709 6585 3.961477 TCACATCGTTTGTTTCACAGG 57.039 42.857 0.00 0.00 36.00 4.00
2710 6586 3.536570 TCACATCGTTTGTTTCACAGGA 58.463 40.909 0.00 0.00 36.00 3.86
2712 6588 4.578516 TCACATCGTTTGTTTCACAGGATT 59.421 37.500 0.00 0.00 36.00 3.01
2714 6590 3.980646 TCGTTTGTTTCACAGGATTGG 57.019 42.857 0.00 0.00 0.00 3.16
2715 6591 3.546724 TCGTTTGTTTCACAGGATTGGA 58.453 40.909 0.00 0.00 0.00 3.53
2716 6592 3.948473 TCGTTTGTTTCACAGGATTGGAA 59.052 39.130 0.00 0.00 0.00 3.53
2717 6593 4.399618 TCGTTTGTTTCACAGGATTGGAAA 59.600 37.500 0.00 0.00 0.00 3.13
2718 6594 5.105716 TCGTTTGTTTCACAGGATTGGAAAA 60.106 36.000 0.00 0.00 32.85 2.29
2719 6595 5.578727 CGTTTGTTTCACAGGATTGGAAAAA 59.421 36.000 0.00 0.00 32.85 1.94
2746 6622 9.793259 ACACAGGAATAGAAAAAGAAATACAGA 57.207 29.630 0.00 0.00 0.00 3.41
2762 6638 9.771534 AGAAATACAGAAAGACTATAGGAATGC 57.228 33.333 4.43 0.00 0.00 3.56
2763 6639 9.547753 GAAATACAGAAAGACTATAGGAATGCA 57.452 33.333 4.43 0.00 0.00 3.96
2764 6640 9.553064 AAATACAGAAAGACTATAGGAATGCAG 57.447 33.333 4.43 0.00 0.00 4.41
2765 6641 5.923204 ACAGAAAGACTATAGGAATGCAGG 58.077 41.667 4.43 0.00 0.00 4.85
2778 6654 4.072131 GGAATGCAGGTGTAAAACAGAGA 58.928 43.478 0.00 0.00 0.00 3.10
2786 6662 7.132863 GCAGGTGTAAAACAGAGAAAAAGTAG 58.867 38.462 0.00 0.00 0.00 2.57
2796 6673 9.883142 AAACAGAGAAAAAGTAGAGGATATGAG 57.117 33.333 0.00 0.00 0.00 2.90
2798 6675 9.432982 ACAGAGAAAAAGTAGAGGATATGAGAT 57.567 33.333 0.00 0.00 0.00 2.75
2819 6696 6.686630 AGATAAATGGAACGTTTGAAATGCA 58.313 32.000 0.46 0.00 0.00 3.96
2822 6699 2.302260 TGGAACGTTTGAAATGCAGGA 58.698 42.857 0.46 0.00 0.00 3.86
2826 6703 4.359706 GAACGTTTGAAATGCAGGAACTT 58.640 39.130 0.46 0.00 34.60 2.66
2827 6704 3.705604 ACGTTTGAAATGCAGGAACTTG 58.294 40.909 0.00 0.00 34.60 3.16
2844 6721 5.106317 GGAACTTGAAACGAAGGAATGCATA 60.106 40.000 0.00 0.00 0.00 3.14
2858 6736 9.727627 GAAGGAATGCATAATTTGTAGAGAAAG 57.272 33.333 0.00 0.00 0.00 2.62
2864 6742 6.127675 TGCATAATTTGTAGAGAAAGCATGCA 60.128 34.615 21.98 14.35 40.29 3.96
2867 6745 3.423539 TTGTAGAGAAAGCATGCACCT 57.576 42.857 21.98 13.18 0.00 4.00
2871 6749 1.065564 AGAGAAAGCATGCACCTCTCC 60.066 52.381 26.98 16.18 34.34 3.71
2891 6769 1.537202 CAAACTGGGCTAGACACAAGC 59.463 52.381 4.33 0.00 39.33 4.01
2900 6778 0.399833 TAGACACAAGCCATGCACCA 59.600 50.000 0.00 0.00 0.00 4.17
2917 6795 2.031420 CACCAAACTCACACATGCTCTG 60.031 50.000 0.00 0.00 0.00 3.35
2920 6798 3.814842 CCAAACTCACACATGCTCTGTAA 59.185 43.478 0.00 0.00 35.91 2.41
2935 6813 1.204467 CTGTAATTGCACGGGCCATTT 59.796 47.619 14.78 4.16 36.78 2.32
2936 6814 1.620819 TGTAATTGCACGGGCCATTTT 59.379 42.857 14.78 1.53 36.78 1.82
2938 6816 3.449018 TGTAATTGCACGGGCCATTTTAT 59.551 39.130 14.78 0.00 36.78 1.40
2973 6851 2.350772 CGGAAAGCATTGGTTGAGTCAC 60.351 50.000 1.18 0.00 0.00 3.67
3010 7571 1.548357 GCTCTGTCCCTCTTGCCTCA 61.548 60.000 0.00 0.00 0.00 3.86
3016 7577 1.066502 GTCCCTCTTGCCTCAGTCTTC 60.067 57.143 0.00 0.00 0.00 2.87
3017 7578 1.203237 TCCCTCTTGCCTCAGTCTTCT 60.203 52.381 0.00 0.00 0.00 2.85
3019 7580 2.354604 CCCTCTTGCCTCAGTCTTCTTC 60.355 54.545 0.00 0.00 0.00 2.87
3020 7581 2.605030 CTCTTGCCTCAGTCTTCTTCG 58.395 52.381 0.00 0.00 0.00 3.79
3021 7582 1.964223 TCTTGCCTCAGTCTTCTTCGT 59.036 47.619 0.00 0.00 0.00 3.85
3022 7583 2.029828 TCTTGCCTCAGTCTTCTTCGTC 60.030 50.000 0.00 0.00 0.00 4.20
3023 7584 1.621992 TGCCTCAGTCTTCTTCGTCT 58.378 50.000 0.00 0.00 0.00 4.18
3024 7585 2.791655 TGCCTCAGTCTTCTTCGTCTA 58.208 47.619 0.00 0.00 0.00 2.59
3053 7936 5.308825 TCCTTCAAATGAGACCTGAAACTC 58.691 41.667 0.00 0.00 0.00 3.01
3062 7945 2.624838 AGACCTGAAACTCGAAACCGTA 59.375 45.455 0.00 0.00 0.00 4.02
3151 8088 1.298157 CTTTCGGCTCGGTTGCATCA 61.298 55.000 0.00 0.00 34.04 3.07
3201 8376 1.817099 GGAGCTCCATGGACAAGCG 60.817 63.158 28.43 1.33 40.95 4.68
3233 8408 2.840066 CGAAGCTCGCCGGATCTCT 61.840 63.158 5.05 0.00 31.14 3.10
3234 8409 1.299773 GAAGCTCGCCGGATCTCTG 60.300 63.158 5.05 0.00 0.00 3.35
3235 8410 3.438017 AAGCTCGCCGGATCTCTGC 62.438 63.158 5.05 0.00 0.00 4.26
3236 8411 4.959596 GCTCGCCGGATCTCTGCC 62.960 72.222 5.05 0.00 0.00 4.85
3242 8417 4.637489 CGGATCTCTGCCGCTCGG 62.637 72.222 3.56 3.56 42.55 4.63
3282 8457 4.573210 TCGCACCCGAGTAGCTAT 57.427 55.556 0.00 0.00 38.82 2.97
3284 8459 0.750546 TCGCACCCGAGTAGCTATGT 60.751 55.000 0.00 0.00 38.82 2.29
3285 8460 0.102481 CGCACCCGAGTAGCTATGTT 59.898 55.000 0.00 0.00 36.29 2.71
3286 8461 1.470979 CGCACCCGAGTAGCTATGTTT 60.471 52.381 0.00 0.00 36.29 2.83
3288 8463 2.822764 CACCCGAGTAGCTATGTTTCC 58.177 52.381 0.00 0.00 0.00 3.13
3290 8465 2.431057 ACCCGAGTAGCTATGTTTCCAG 59.569 50.000 0.00 0.00 0.00 3.86
3291 8466 2.474816 CCGAGTAGCTATGTTTCCAGC 58.525 52.381 0.00 0.00 38.09 4.85
3292 8467 2.159099 CCGAGTAGCTATGTTTCCAGCA 60.159 50.000 0.00 0.00 40.36 4.41
3294 8469 3.932710 CGAGTAGCTATGTTTCCAGCAAA 59.067 43.478 0.00 0.00 40.36 3.68
3315 8490 2.426023 ACCAGAGGACGTGGTTGC 59.574 61.111 0.00 0.00 46.73 4.17
3316 8491 2.425592 CCAGAGGACGTGGTTGCA 59.574 61.111 0.00 0.00 0.00 4.08
3317 8492 1.669115 CCAGAGGACGTGGTTGCAG 60.669 63.158 0.00 0.00 0.00 4.41
3318 8493 2.031163 AGAGGACGTGGTTGCAGC 59.969 61.111 0.00 0.00 0.00 5.25
3319 8494 2.031163 GAGGACGTGGTTGCAGCT 59.969 61.111 0.00 0.00 0.00 4.24
3320 8495 1.598130 GAGGACGTGGTTGCAGCTT 60.598 57.895 0.00 0.00 0.00 3.74
3321 8496 1.845809 GAGGACGTGGTTGCAGCTTG 61.846 60.000 0.00 0.00 0.00 4.01
3323 8498 3.542629 GACGTGGTTGCAGCTTGCC 62.543 63.158 0.00 0.00 44.23 4.52
3324 8499 3.594775 CGTGGTTGCAGCTTGCCA 61.595 61.111 0.00 0.00 44.23 4.92
3325 8500 2.922950 CGTGGTTGCAGCTTGCCAT 61.923 57.895 0.00 0.00 44.23 4.40
3326 8501 1.080298 GTGGTTGCAGCTTGCCATC 60.080 57.895 0.00 0.00 44.23 3.51
3327 8502 1.228644 TGGTTGCAGCTTGCCATCT 60.229 52.632 0.00 0.00 44.23 2.90
3329 8504 0.389426 GGTTGCAGCTTGCCATCTTG 60.389 55.000 0.00 0.00 44.23 3.02
3331 8506 2.162338 TTGCAGCTTGCCATCTTGCC 62.162 55.000 5.82 0.00 44.23 4.52
3332 8507 2.890371 CAGCTTGCCATCTTGCCC 59.110 61.111 0.00 0.00 0.00 5.36
3334 8509 0.394762 CAGCTTGCCATCTTGCCCTA 60.395 55.000 0.00 0.00 0.00 3.53
3335 8510 0.106819 AGCTTGCCATCTTGCCCTAG 60.107 55.000 0.00 0.00 0.00 3.02
3336 8511 0.394899 GCTTGCCATCTTGCCCTAGT 60.395 55.000 0.00 0.00 0.00 2.57
3337 8512 1.386533 CTTGCCATCTTGCCCTAGTG 58.613 55.000 0.00 0.00 0.00 2.74
3338 8513 0.680921 TTGCCATCTTGCCCTAGTGC 60.681 55.000 0.00 0.00 0.00 4.40
3339 8514 1.825622 GCCATCTTGCCCTAGTGCC 60.826 63.158 0.00 0.00 0.00 5.01
3340 8515 1.609239 CCATCTTGCCCTAGTGCCA 59.391 57.895 0.00 0.00 0.00 4.92
3341 8516 0.465097 CCATCTTGCCCTAGTGCCAG 60.465 60.000 0.00 0.00 0.00 4.85
3342 8517 1.099879 CATCTTGCCCTAGTGCCAGC 61.100 60.000 0.00 0.00 0.00 4.85
3343 8518 1.565390 ATCTTGCCCTAGTGCCAGCA 61.565 55.000 0.00 0.00 0.00 4.41
3344 8519 2.034066 TTGCCCTAGTGCCAGCAC 59.966 61.111 14.91 14.91 46.50 4.40
3352 8527 3.106407 GTGCCAGCACGTCGTCTC 61.106 66.667 7.07 0.00 37.19 3.36
3356 8531 2.502080 CAGCACGTCGTCTCCGTC 60.502 66.667 0.00 0.00 36.17 4.79
3363 8839 1.596727 ACGTCGTCTCCGTCTTATAGC 59.403 52.381 0.00 0.00 31.97 2.97
3386 8862 1.921243 AAAAAGTGTTGCAGTTCGCC 58.079 45.000 0.00 0.00 41.33 5.54
3388 8864 1.092921 AAAGTGTTGCAGTTCGCCGA 61.093 50.000 0.00 0.00 41.33 5.54
3389 8865 1.772063 AAGTGTTGCAGTTCGCCGAC 61.772 55.000 0.00 0.00 41.33 4.79
3390 8866 3.334751 TGTTGCAGTTCGCCGACG 61.335 61.111 0.00 0.00 41.33 5.12
3391 8867 4.719616 GTTGCAGTTCGCCGACGC 62.720 66.667 0.00 0.00 41.33 5.19
3395 8871 3.342627 CAGTTCGCCGACGCCAAA 61.343 61.111 0.00 0.00 39.84 3.28
3396 8872 2.589442 AGTTCGCCGACGCCAAAA 60.589 55.556 0.00 0.00 39.84 2.44
3397 8873 2.426261 GTTCGCCGACGCCAAAAC 60.426 61.111 0.00 0.00 39.84 2.43
3398 8874 2.589442 TTCGCCGACGCCAAAACT 60.589 55.556 0.00 0.00 39.84 2.66
3399 8875 2.887889 TTCGCCGACGCCAAAACTG 61.888 57.895 0.00 0.00 39.84 3.16
3400 8876 3.645975 CGCCGACGCCAAAACTGT 61.646 61.111 0.00 0.00 0.00 3.55
3401 8877 2.719354 GCCGACGCCAAAACTGTT 59.281 55.556 0.00 0.00 0.00 3.16
3402 8878 1.657181 GCCGACGCCAAAACTGTTG 60.657 57.895 0.00 0.00 0.00 3.33
3403 8879 1.725066 CCGACGCCAAAACTGTTGT 59.275 52.632 0.00 0.00 0.00 3.32
3404 8880 0.591236 CCGACGCCAAAACTGTTGTG 60.591 55.000 3.64 3.64 0.00 3.33
3406 8882 0.869880 GACGCCAAAACTGTTGTGCC 60.870 55.000 5.15 0.00 0.00 5.01
3407 8883 1.943693 CGCCAAAACTGTTGTGCCG 60.944 57.895 5.15 2.28 0.00 5.69
3408 8884 1.591327 GCCAAAACTGTTGTGCCGG 60.591 57.895 5.15 0.00 0.00 6.13
3409 8885 1.813192 CCAAAACTGTTGTGCCGGT 59.187 52.632 1.90 0.00 0.00 5.28
3410 8886 0.174617 CCAAAACTGTTGTGCCGGTT 59.825 50.000 1.90 0.00 35.45 4.44
3411 8887 1.555477 CAAAACTGTTGTGCCGGTTC 58.445 50.000 1.90 0.00 32.81 3.62
3412 8888 0.458260 AAAACTGTTGTGCCGGTTCC 59.542 50.000 1.90 0.00 32.81 3.62
3413 8889 0.681564 AAACTGTTGTGCCGGTTCCA 60.682 50.000 1.90 0.00 32.81 3.53
3414 8890 1.101049 AACTGTTGTGCCGGTTCCAG 61.101 55.000 1.90 5.29 27.52 3.86
3416 8892 2.904866 GTTGTGCCGGTTCCAGCA 60.905 61.111 1.90 0.00 36.44 4.41
3417 8893 2.124109 TTGTGCCGGTTCCAGCAA 60.124 55.556 1.90 0.00 41.48 3.91
3420 8896 1.323271 TGTGCCGGTTCCAGCAAAAA 61.323 50.000 1.90 0.00 41.48 1.94
3436 8912 0.242555 AAAAATTGCCGTGGTAGCCG 59.757 50.000 0.00 0.00 0.00 5.52
3442 8918 3.697747 CCGTGGTAGCCGGTTCCA 61.698 66.667 1.90 6.82 40.59 3.53
3444 8920 2.030958 CGTGGTAGCCGGTTCCAAC 61.031 63.158 14.04 0.00 32.82 3.77
3445 8921 1.071814 GTGGTAGCCGGTTCCAACA 59.928 57.895 14.04 0.00 32.82 3.33
3446 8922 0.535553 GTGGTAGCCGGTTCCAACAA 60.536 55.000 14.04 0.00 32.82 2.83
3447 8923 0.183014 TGGTAGCCGGTTCCAACAAA 59.817 50.000 1.90 0.00 0.00 2.83
3464 8940 4.645692 AAAAATTGCCGTGGTCGC 57.354 50.000 0.00 0.00 35.54 5.19
3465 8941 1.006688 AAAAATTGCCGTGGTCGCC 60.007 52.632 0.00 0.00 35.54 5.54
3466 8942 2.741116 AAAAATTGCCGTGGTCGCCG 62.741 55.000 0.00 0.00 35.54 6.46
3477 8953 2.746277 GTCGCCGGTTCCAGCAAT 60.746 61.111 1.90 0.00 0.00 3.56
3480 8956 2.877691 GCCGGTTCCAGCAATCAC 59.122 61.111 1.90 0.00 0.00 3.06
3481 8957 1.971167 GCCGGTTCCAGCAATCACA 60.971 57.895 1.90 0.00 0.00 3.58
3483 8959 1.308069 CCGGTTCCAGCAATCACAGG 61.308 60.000 0.00 0.00 0.00 4.00
3484 8960 1.308069 CGGTTCCAGCAATCACAGGG 61.308 60.000 0.00 0.00 0.00 4.45
3485 8961 0.251341 GGTTCCAGCAATCACAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
3486 8962 1.004277 GGTTCCAGCAATCACAGGGTA 59.996 52.381 0.00 0.00 0.00 3.69
3487 8963 2.357154 GGTTCCAGCAATCACAGGGTAT 60.357 50.000 0.00 0.00 0.00 2.73
3489 8965 3.838244 TCCAGCAATCACAGGGTATAC 57.162 47.619 0.00 0.00 0.00 1.47
3490 8966 2.438021 TCCAGCAATCACAGGGTATACC 59.562 50.000 13.99 13.99 40.67 2.73
3503 8979 3.175109 GGTATACCCCGAAGTGACAAG 57.825 52.381 11.17 0.00 0.00 3.16
3504 8980 2.498885 GGTATACCCCGAAGTGACAAGT 59.501 50.000 11.17 0.00 0.00 3.16
3505 8981 3.701040 GGTATACCCCGAAGTGACAAGTA 59.299 47.826 11.17 0.00 0.00 2.24
3506 8982 4.202090 GGTATACCCCGAAGTGACAAGTAG 60.202 50.000 11.17 0.00 0.00 2.57
3507 8983 2.005370 ACCCCGAAGTGACAAGTAGA 57.995 50.000 0.00 0.00 0.00 2.59
3508 8984 2.322658 ACCCCGAAGTGACAAGTAGAA 58.677 47.619 0.00 0.00 0.00 2.10
3509 8985 2.299297 ACCCCGAAGTGACAAGTAGAAG 59.701 50.000 0.00 0.00 0.00 2.85
3510 8986 2.353803 CCCCGAAGTGACAAGTAGAAGG 60.354 54.545 0.00 0.00 0.00 3.46
3511 8987 2.353803 CCCGAAGTGACAAGTAGAAGGG 60.354 54.545 0.00 0.00 0.00 3.95
3513 8989 3.367498 CCGAAGTGACAAGTAGAAGGGAG 60.367 52.174 0.00 0.00 0.00 4.30
3514 8990 3.367498 CGAAGTGACAAGTAGAAGGGAGG 60.367 52.174 0.00 0.00 0.00 4.30
3515 8991 3.261818 AGTGACAAGTAGAAGGGAGGT 57.738 47.619 0.00 0.00 0.00 3.85
3516 8992 2.900546 AGTGACAAGTAGAAGGGAGGTG 59.099 50.000 0.00 0.00 0.00 4.00
3518 8994 3.323979 GTGACAAGTAGAAGGGAGGTGAA 59.676 47.826 0.00 0.00 0.00 3.18
3520 8996 4.597507 TGACAAGTAGAAGGGAGGTGAATT 59.402 41.667 0.00 0.00 0.00 2.17
3521 8997 5.167303 ACAAGTAGAAGGGAGGTGAATTC 57.833 43.478 0.00 0.00 0.00 2.17
3522 8998 4.597507 ACAAGTAGAAGGGAGGTGAATTCA 59.402 41.667 3.38 3.38 0.00 2.57
3523 8999 5.251700 ACAAGTAGAAGGGAGGTGAATTCAT 59.748 40.000 12.12 0.00 0.00 2.57
3526 9002 2.243221 AGAAGGGAGGTGAATTCATGGG 59.757 50.000 12.12 0.00 0.00 4.00
3527 9003 0.259938 AGGGAGGTGAATTCATGGGC 59.740 55.000 12.12 0.00 0.00 5.36
3529 9005 1.685148 GGAGGTGAATTCATGGGCTC 58.315 55.000 12.12 0.00 0.00 4.70
3531 9007 0.749454 AGGTGAATTCATGGGCTCGC 60.749 55.000 12.12 0.00 0.00 5.03
3532 9008 0.749454 GGTGAATTCATGGGCTCGCT 60.749 55.000 12.12 0.00 0.00 4.93
3533 9009 0.379669 GTGAATTCATGGGCTCGCTG 59.620 55.000 12.12 0.00 0.00 5.18
3534 9010 0.252761 TGAATTCATGGGCTCGCTGA 59.747 50.000 3.38 0.00 0.00 4.26
3535 9011 1.134007 TGAATTCATGGGCTCGCTGAT 60.134 47.619 3.38 0.00 0.00 2.90
3536 9012 1.266175 GAATTCATGGGCTCGCTGATG 59.734 52.381 0.00 0.00 0.00 3.07
3538 9014 0.252761 TTCATGGGCTCGCTGATGAA 59.747 50.000 10.17 10.17 33.46 2.57
3542 9018 1.260538 TGGGCTCGCTGATGAAGTCT 61.261 55.000 0.00 0.00 0.00 3.24
3543 9019 0.747255 GGGCTCGCTGATGAAGTCTA 59.253 55.000 0.00 0.00 0.00 2.59
3544 9020 1.269517 GGGCTCGCTGATGAAGTCTAG 60.270 57.143 0.00 0.00 0.00 2.43
3545 9021 1.678627 GGCTCGCTGATGAAGTCTAGA 59.321 52.381 0.00 0.00 0.00 2.43
3546 9022 2.287547 GGCTCGCTGATGAAGTCTAGAG 60.288 54.545 0.00 0.00 0.00 2.43
3547 9023 2.287547 GCTCGCTGATGAAGTCTAGAGG 60.288 54.545 0.00 0.00 0.00 3.69
3548 9024 2.293122 CTCGCTGATGAAGTCTAGAGGG 59.707 54.545 0.00 0.00 0.00 4.30
3549 9025 2.092375 TCGCTGATGAAGTCTAGAGGGA 60.092 50.000 0.00 0.00 0.00 4.20
3551 9027 3.305267 CGCTGATGAAGTCTAGAGGGATG 60.305 52.174 0.00 0.00 0.00 3.51
3552 9028 3.894427 GCTGATGAAGTCTAGAGGGATGA 59.106 47.826 0.00 0.00 0.00 2.92
3554 9030 5.136068 TGATGAAGTCTAGAGGGATGAGT 57.864 43.478 0.00 0.00 0.00 3.41
3555 9031 5.523588 TGATGAAGTCTAGAGGGATGAGTT 58.476 41.667 0.00 0.00 0.00 3.01
3556 9032 5.960811 TGATGAAGTCTAGAGGGATGAGTTT 59.039 40.000 0.00 0.00 0.00 2.66
3558 9034 4.081420 TGAAGTCTAGAGGGATGAGTTTGC 60.081 45.833 0.00 0.00 0.00 3.68
3559 9035 2.769095 AGTCTAGAGGGATGAGTTTGCC 59.231 50.000 0.00 0.00 0.00 4.52
3565 9041 1.763968 GGGATGAGTTTGCCCTAACC 58.236 55.000 0.00 0.00 38.85 2.85
3566 9042 1.379527 GGATGAGTTTGCCCTAACCG 58.620 55.000 0.00 0.00 0.00 4.44
3568 9044 0.037590 ATGAGTTTGCCCTAACCGCA 59.962 50.000 0.00 0.00 0.00 5.69
3569 9045 0.037590 TGAGTTTGCCCTAACCGCAT 59.962 50.000 0.00 0.00 35.83 4.73
3570 9046 1.279558 TGAGTTTGCCCTAACCGCATA 59.720 47.619 0.00 0.00 35.83 3.14
3571 9047 1.940613 GAGTTTGCCCTAACCGCATAG 59.059 52.381 0.00 0.00 35.83 2.23
3582 9058 1.705873 ACCGCATAGGGTTAGAGGAG 58.294 55.000 0.00 0.00 46.96 3.69
3583 9059 1.217183 ACCGCATAGGGTTAGAGGAGA 59.783 52.381 0.00 0.00 46.96 3.71
3584 9060 2.317040 CCGCATAGGGTTAGAGGAGAA 58.683 52.381 0.00 0.00 35.97 2.87
3585 9061 2.698797 CCGCATAGGGTTAGAGGAGAAA 59.301 50.000 0.00 0.00 35.97 2.52
3586 9062 3.134081 CCGCATAGGGTTAGAGGAGAAAA 59.866 47.826 0.00 0.00 35.97 2.29
3588 9064 4.811557 CGCATAGGGTTAGAGGAGAAAAAG 59.188 45.833 0.00 0.00 0.00 2.27
3590 9066 5.104485 GCATAGGGTTAGAGGAGAAAAAGGA 60.104 44.000 0.00 0.00 0.00 3.36
3591 9067 4.912317 AGGGTTAGAGGAGAAAAAGGAC 57.088 45.455 0.00 0.00 0.00 3.85
3594 9070 4.286291 GGGTTAGAGGAGAAAAAGGACAGA 59.714 45.833 0.00 0.00 0.00 3.41
3595 9071 5.483811 GGTTAGAGGAGAAAAAGGACAGAG 58.516 45.833 0.00 0.00 0.00 3.35
3596 9072 5.012251 GGTTAGAGGAGAAAAAGGACAGAGT 59.988 44.000 0.00 0.00 0.00 3.24
3597 9073 4.882842 AGAGGAGAAAAAGGACAGAGTC 57.117 45.455 0.00 0.00 0.00 3.36
3598 9074 4.488770 AGAGGAGAAAAAGGACAGAGTCT 58.511 43.478 0.00 0.00 32.47 3.24
3599 9075 4.283212 AGAGGAGAAAAAGGACAGAGTCTG 59.717 45.833 18.83 18.83 37.52 3.51
3601 9077 4.843516 AGGAGAAAAAGGACAGAGTCTGAT 59.156 41.667 26.86 10.81 35.18 2.90
3602 9078 5.309282 AGGAGAAAAAGGACAGAGTCTGATT 59.691 40.000 26.86 14.33 35.18 2.57
3603 9079 6.000840 GGAGAAAAAGGACAGAGTCTGATTT 58.999 40.000 26.86 18.76 35.18 2.17
3604 9080 6.488344 GGAGAAAAAGGACAGAGTCTGATTTT 59.512 38.462 26.86 22.55 35.18 1.82
3605 9081 7.661847 GGAGAAAAAGGACAGAGTCTGATTTTA 59.338 37.037 26.86 0.00 35.18 1.52
3609 9085 4.826556 AGGACAGAGTCTGATTTTACAGC 58.173 43.478 26.86 4.19 37.75 4.40
3610 9086 4.530161 AGGACAGAGTCTGATTTTACAGCT 59.470 41.667 26.86 0.00 37.75 4.24
3612 9088 5.473931 GACAGAGTCTGATTTTACAGCTGA 58.526 41.667 26.86 0.48 37.75 4.26
3613 9089 5.233988 ACAGAGTCTGATTTTACAGCTGAC 58.766 41.667 26.86 4.33 37.75 3.51
3614 9090 5.011533 ACAGAGTCTGATTTTACAGCTGACT 59.988 40.000 26.86 9.83 41.50 3.41
3616 9092 4.826556 AGTCTGATTTTACAGCTGACTCC 58.173 43.478 23.35 4.76 36.51 3.85
3617 9093 4.284490 AGTCTGATTTTACAGCTGACTCCA 59.716 41.667 23.35 9.14 36.51 3.86
3618 9094 5.046014 AGTCTGATTTTACAGCTGACTCCAT 60.046 40.000 23.35 5.29 36.51 3.41
3619 9095 5.645497 GTCTGATTTTACAGCTGACTCCATT 59.355 40.000 23.35 0.00 37.75 3.16
3620 9096 6.150140 GTCTGATTTTACAGCTGACTCCATTT 59.850 38.462 23.35 0.00 37.75 2.32
3621 9097 7.334421 GTCTGATTTTACAGCTGACTCCATTTA 59.666 37.037 23.35 0.00 37.75 1.40
3622 9098 8.049117 TCTGATTTTACAGCTGACTCCATTTAT 58.951 33.333 23.35 0.00 37.75 1.40
3623 9099 8.213518 TGATTTTACAGCTGACTCCATTTATC 57.786 34.615 23.35 10.17 0.00 1.75
3624 9100 8.049117 TGATTTTACAGCTGACTCCATTTATCT 58.951 33.333 23.35 0.00 0.00 1.98
3625 9101 7.849804 TTTTACAGCTGACTCCATTTATCTC 57.150 36.000 23.35 0.00 0.00 2.75
3626 9102 6.798427 TTACAGCTGACTCCATTTATCTCT 57.202 37.500 23.35 0.00 0.00 3.10
3627 9103 7.898014 TTACAGCTGACTCCATTTATCTCTA 57.102 36.000 23.35 0.00 0.00 2.43
3628 9104 6.992664 ACAGCTGACTCCATTTATCTCTAT 57.007 37.500 23.35 0.00 0.00 1.98
3629 9105 9.588096 TTACAGCTGACTCCATTTATCTCTATA 57.412 33.333 23.35 0.00 0.00 1.31
3630 9106 8.663209 ACAGCTGACTCCATTTATCTCTATAT 57.337 34.615 23.35 0.00 0.00 0.86
3631 9107 9.760926 ACAGCTGACTCCATTTATCTCTATATA 57.239 33.333 23.35 0.00 0.00 0.86
3633 9109 9.989296 AGCTGACTCCATTTATCTCTATATACT 57.011 33.333 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.038557 TGTCTTCCAGGTAAGCTTCCAC 59.961 50.000 0.00 0.00 0.00 4.02
114 115 1.683938 CCAGATGAAGGCCTTGATGCA 60.684 52.381 26.25 15.36 0.00 3.96
198 199 1.137825 CACAAAACACGCACCGGTT 59.862 52.632 2.97 0.00 0.00 4.44
306 308 1.152839 AAAAGGGGTGTGGGTGTCG 60.153 57.895 0.00 0.00 0.00 4.35
310 326 2.520741 CGCAAAAGGGGTGTGGGT 60.521 61.111 0.00 0.00 0.00 4.51
312 328 1.184970 ATTCCGCAAAAGGGGTGTGG 61.185 55.000 0.00 0.00 46.16 4.17
313 329 0.038343 CATTCCGCAAAAGGGGTGTG 60.038 55.000 0.00 0.00 0.00 3.82
318 334 0.897863 TCCACCATTCCGCAAAAGGG 60.898 55.000 0.00 0.00 36.18 3.95
407 423 0.893270 CCGGTGTTTCCAGATTGCCA 60.893 55.000 0.00 0.00 35.57 4.92
463 480 4.270834 TGAATAGACCGAAGCAGACTAGT 58.729 43.478 0.00 0.00 0.00 2.57
559 576 1.681793 CTCGTCCCCGATACATCAAGT 59.318 52.381 0.00 0.00 43.27 3.16
661 681 6.454795 TGCATTGATAGAAAGGGTGAAAAAC 58.545 36.000 0.00 0.00 0.00 2.43
672 694 6.616774 TGCGTATCATTGCATTGATAGAAA 57.383 33.333 24.60 13.83 38.83 2.52
674 696 6.652062 AGATTGCGTATCATTGCATTGATAGA 59.348 34.615 24.60 14.68 41.42 1.98
721 743 8.946797 ATTGGTACCCGAGTTTAGTACTATAT 57.053 34.615 10.07 0.00 37.17 0.86
722 744 8.220559 AGATTGGTACCCGAGTTTAGTACTATA 58.779 37.037 10.07 0.00 37.17 1.31
723 745 7.065504 AGATTGGTACCCGAGTTTAGTACTAT 58.934 38.462 10.07 0.00 37.17 2.12
724 746 6.426587 AGATTGGTACCCGAGTTTAGTACTA 58.573 40.000 10.07 0.00 37.17 1.82
725 747 5.267587 AGATTGGTACCCGAGTTTAGTACT 58.732 41.667 10.07 0.00 40.71 2.73
726 748 5.588958 AGATTGGTACCCGAGTTTAGTAC 57.411 43.478 10.07 0.00 36.47 2.73
737 759 3.947834 CTGGATTGACAAGATTGGTACCC 59.052 47.826 10.07 0.00 0.00 3.69
742 764 2.353889 CGAGCTGGATTGACAAGATTGG 59.646 50.000 0.00 0.00 0.00 3.16
750 772 2.514824 GCCCCGAGCTGGATTGAC 60.515 66.667 0.00 0.00 42.00 3.18
759 781 2.955022 ATCTGATGCTTGCCCCGAGC 62.955 60.000 0.00 0.00 41.00 5.03
766 788 9.557338 GAATTAAGATGATTATCTGATGCTTGC 57.443 33.333 0.00 0.00 42.80 4.01
989 4847 3.130693 TGCTCTGAGACTGATGAGACATG 59.869 47.826 9.28 0.00 0.00 3.21
990 4848 3.363627 TGCTCTGAGACTGATGAGACAT 58.636 45.455 9.28 0.00 0.00 3.06
994 4852 2.542597 GCTTGCTCTGAGACTGATGAG 58.457 52.381 9.28 0.00 0.00 2.90
1026 4884 0.462375 TCTCTCTCTCTCTCCGTCCG 59.538 60.000 0.00 0.00 0.00 4.79
1028 4886 2.803492 GCTCTCTCTCTCTCTCTCCGTC 60.803 59.091 0.00 0.00 0.00 4.79
1032 4890 4.830046 TCTCTAGCTCTCTCTCTCTCTCTC 59.170 50.000 0.00 0.00 0.00 3.20
1033 4891 4.586841 GTCTCTAGCTCTCTCTCTCTCTCT 59.413 50.000 0.00 0.00 0.00 3.10
1126 4984 4.280019 ACCGGGTTGAAGTGGCCC 62.280 66.667 6.32 0.00 39.03 5.80
1192 5050 2.664851 CGCTGCTCGGTGTGGAAA 60.665 61.111 0.00 0.00 33.78 3.13
1566 5424 1.131315 GAAGGGAAGTCAAGCGAATGC 59.869 52.381 0.00 0.00 43.24 3.56
1578 5436 1.136305 TGGCGAATAGACGAAGGGAAG 59.864 52.381 0.00 0.00 35.09 3.46
1587 5445 5.353123 TGGTCTACAAAAATGGCGAATAGAC 59.647 40.000 0.00 0.00 37.43 2.59
1604 5462 5.009610 TCCAAGAATTTGTTTGCTGGTCTAC 59.990 40.000 0.00 0.00 32.21 2.59
1632 5494 0.458669 TTCCCAGCTCGACCGATAAC 59.541 55.000 0.00 0.00 0.00 1.89
1642 5504 0.462581 TCGTGATGCATTCCCAGCTC 60.463 55.000 0.00 0.00 0.00 4.09
2003 5872 4.410400 CCGGGCTTCTGGGTGTCC 62.410 72.222 0.00 0.00 33.24 4.02
2270 6139 2.743928 GAGTTCCAGCCGCTGTGG 60.744 66.667 18.98 5.97 42.50 4.17
2429 6298 0.464373 TCTCAATGGCGGCCTTGATC 60.464 55.000 25.51 0.49 31.39 2.92
2567 6436 2.558359 TCAGAACGAGTTGATGAGAGCA 59.442 45.455 0.00 0.00 0.00 4.26
2622 6495 6.992715 AGAGAAACCAAATCGATATAAGGTGG 59.007 38.462 0.00 2.69 0.00 4.61
2625 6498 6.924060 ACGAGAGAAACCAAATCGATATAAGG 59.076 38.462 0.00 0.89 37.16 2.69
2630 6503 4.862574 CACACGAGAGAAACCAAATCGATA 59.137 41.667 0.00 0.00 37.16 2.92
2649 6525 5.784578 AACAGGTTTCCTTTATTCCACAC 57.215 39.130 0.00 0.00 0.00 3.82
2680 6556 1.717113 CAAACGATGTGAACTCGCGTA 59.283 47.619 5.77 0.00 39.71 4.42
2682 6558 0.506932 ACAAACGATGTGAACTCGCG 59.493 50.000 0.00 0.00 41.93 5.87
2683 6559 2.663279 AACAAACGATGTGAACTCGC 57.337 45.000 0.00 0.00 42.99 5.03
2720 6596 9.793259 TCTGTATTTCTTTTTCTATTCCTGTGT 57.207 29.630 0.00 0.00 0.00 3.72
2736 6612 9.771534 GCATTCCTATAGTCTTTCTGTATTTCT 57.228 33.333 0.00 0.00 0.00 2.52
2737 6613 9.547753 TGCATTCCTATAGTCTTTCTGTATTTC 57.452 33.333 0.00 0.00 0.00 2.17
2738 6614 9.553064 CTGCATTCCTATAGTCTTTCTGTATTT 57.447 33.333 0.00 0.00 0.00 1.40
2739 6615 8.153550 CCTGCATTCCTATAGTCTTTCTGTATT 58.846 37.037 0.00 0.00 0.00 1.89
2740 6616 7.291182 ACCTGCATTCCTATAGTCTTTCTGTAT 59.709 37.037 0.00 0.00 0.00 2.29
2742 6618 5.426833 ACCTGCATTCCTATAGTCTTTCTGT 59.573 40.000 0.00 0.00 0.00 3.41
2743 6619 5.757320 CACCTGCATTCCTATAGTCTTTCTG 59.243 44.000 0.00 0.00 0.00 3.02
2744 6620 5.426833 ACACCTGCATTCCTATAGTCTTTCT 59.573 40.000 0.00 0.00 0.00 2.52
2745 6621 5.675538 ACACCTGCATTCCTATAGTCTTTC 58.324 41.667 0.00 0.00 0.00 2.62
2746 6622 5.700402 ACACCTGCATTCCTATAGTCTTT 57.300 39.130 0.00 0.00 0.00 2.52
2747 6623 6.808321 TTACACCTGCATTCCTATAGTCTT 57.192 37.500 0.00 0.00 0.00 3.01
2748 6624 6.808321 TTTACACCTGCATTCCTATAGTCT 57.192 37.500 0.00 0.00 0.00 3.24
2749 6625 6.821665 TGTTTTACACCTGCATTCCTATAGTC 59.178 38.462 0.00 0.00 0.00 2.59
2750 6626 6.717289 TGTTTTACACCTGCATTCCTATAGT 58.283 36.000 0.00 0.00 0.00 2.12
2752 6628 6.953101 TCTGTTTTACACCTGCATTCCTATA 58.047 36.000 0.00 0.00 0.00 1.31
2753 6629 5.815581 TCTGTTTTACACCTGCATTCCTAT 58.184 37.500 0.00 0.00 0.00 2.57
2754 6630 5.012664 TCTCTGTTTTACACCTGCATTCCTA 59.987 40.000 0.00 0.00 0.00 2.94
2755 6631 4.074970 CTCTGTTTTACACCTGCATTCCT 58.925 43.478 0.00 0.00 0.00 3.36
2756 6632 4.072131 TCTCTGTTTTACACCTGCATTCC 58.928 43.478 0.00 0.00 0.00 3.01
2758 6634 6.463995 TTTTCTCTGTTTTACACCTGCATT 57.536 33.333 0.00 0.00 0.00 3.56
2759 6635 6.096846 ACTTTTTCTCTGTTTTACACCTGCAT 59.903 34.615 0.00 0.00 0.00 3.96
2761 6637 5.891451 ACTTTTTCTCTGTTTTACACCTGC 58.109 37.500 0.00 0.00 0.00 4.85
2762 6638 8.433421 TCTACTTTTTCTCTGTTTTACACCTG 57.567 34.615 0.00 0.00 0.00 4.00
2763 6639 7.715686 CCTCTACTTTTTCTCTGTTTTACACCT 59.284 37.037 0.00 0.00 0.00 4.00
2764 6640 7.713942 TCCTCTACTTTTTCTCTGTTTTACACC 59.286 37.037 0.00 0.00 0.00 4.16
2765 6641 8.658499 TCCTCTACTTTTTCTCTGTTTTACAC 57.342 34.615 0.00 0.00 0.00 2.90
2786 6662 8.499162 CAAACGTTCCATTTATCTCATATCCTC 58.501 37.037 0.00 0.00 0.00 3.71
2796 6673 6.034898 CCTGCATTTCAAACGTTCCATTTATC 59.965 38.462 0.00 0.00 0.00 1.75
2798 6675 5.010112 TCCTGCATTTCAAACGTTCCATTTA 59.990 36.000 0.00 0.00 0.00 1.40
2819 6696 3.253432 GCATTCCTTCGTTTCAAGTTCCT 59.747 43.478 0.00 0.00 0.00 3.36
2822 6699 4.853924 ATGCATTCCTTCGTTTCAAGTT 57.146 36.364 0.00 0.00 0.00 2.66
2826 6703 6.686630 ACAAATTATGCATTCCTTCGTTTCA 58.313 32.000 3.54 0.00 0.00 2.69
2827 6704 8.181573 TCTACAAATTATGCATTCCTTCGTTTC 58.818 33.333 3.54 0.00 0.00 2.78
2844 6721 4.768968 AGGTGCATGCTTTCTCTACAAATT 59.231 37.500 20.33 0.00 0.00 1.82
2858 6736 0.524862 CAGTTTGGAGAGGTGCATGC 59.475 55.000 11.82 11.82 0.00 4.06
2864 6742 1.203313 TCTAGCCCAGTTTGGAGAGGT 60.203 52.381 0.00 0.00 40.96 3.85
2867 6745 1.623811 GTGTCTAGCCCAGTTTGGAGA 59.376 52.381 0.00 0.00 40.96 3.71
2871 6749 1.537202 GCTTGTGTCTAGCCCAGTTTG 59.463 52.381 0.00 0.00 32.45 2.93
2891 6769 1.031235 TGTGTGAGTTTGGTGCATGG 58.969 50.000 0.00 0.00 0.00 3.66
2900 6778 5.563475 GCAATTACAGAGCATGTGTGAGTTT 60.563 40.000 4.94 0.00 45.00 2.66
2917 6795 2.378445 AAAATGGCCCGTGCAATTAC 57.622 45.000 0.00 0.00 40.34 1.89
2920 6798 2.419851 CCAATAAAATGGCCCGTGCAAT 60.420 45.455 0.00 0.00 40.13 3.56
2935 6813 1.001068 TCCGTGAGCGTGTTCCAATAA 59.999 47.619 0.00 0.00 36.15 1.40
2936 6814 0.604073 TCCGTGAGCGTGTTCCAATA 59.396 50.000 0.00 0.00 36.15 1.90
2938 6816 0.462225 TTTCCGTGAGCGTGTTCCAA 60.462 50.000 0.00 0.00 36.15 3.53
2973 6851 0.110056 GCTGCAACAGATTCGTGTGG 60.110 55.000 0.00 0.00 32.44 4.17
2978 6856 1.392853 GACAGAGCTGCAACAGATTCG 59.607 52.381 1.02 0.00 32.44 3.34
3062 7945 2.357009 ACAATTATCGAGACGCGTACCT 59.643 45.455 13.97 5.77 41.80 3.08
3151 8088 0.318869 TGTTTGGATCGTACGCGTGT 60.319 50.000 24.59 6.91 39.49 4.49
3201 8376 2.126228 TTCGACGCCGGTCATGTC 60.126 61.111 1.90 5.77 43.61 3.06
3224 8399 4.637489 CGAGCGGCAGAGATCCGG 62.637 72.222 1.45 0.00 46.51 5.14
3263 8438 0.179026 ATAGCTACTCGGGTGCGAGA 60.179 55.000 0.00 0.00 39.15 4.04
3266 8441 0.102481 AACATAGCTACTCGGGTGCG 59.898 55.000 0.00 0.00 0.00 5.34
3267 8442 2.202566 GAAACATAGCTACTCGGGTGC 58.797 52.381 0.00 0.00 0.00 5.01
3268 8443 2.167693 TGGAAACATAGCTACTCGGGTG 59.832 50.000 0.00 0.00 33.40 4.61
3269 8444 2.431057 CTGGAAACATAGCTACTCGGGT 59.569 50.000 0.00 0.00 41.51 5.28
3270 8445 2.803492 GCTGGAAACATAGCTACTCGGG 60.803 54.545 0.00 0.00 41.51 5.14
3271 8446 2.159099 TGCTGGAAACATAGCTACTCGG 60.159 50.000 0.00 0.00 41.51 4.63
3272 8447 3.165058 TGCTGGAAACATAGCTACTCG 57.835 47.619 0.00 0.00 41.51 4.18
3298 8473 2.383245 CTGCAACCACGTCCTCTGGT 62.383 60.000 0.00 0.00 44.39 4.00
3299 8474 1.669115 CTGCAACCACGTCCTCTGG 60.669 63.158 0.00 0.00 34.62 3.86
3300 8475 2.320587 GCTGCAACCACGTCCTCTG 61.321 63.158 0.00 0.00 0.00 3.35
3301 8476 2.031163 GCTGCAACCACGTCCTCT 59.969 61.111 0.00 0.00 0.00 3.69
3302 8477 1.598130 AAGCTGCAACCACGTCCTC 60.598 57.895 1.02 0.00 0.00 3.71
3303 8478 1.893808 CAAGCTGCAACCACGTCCT 60.894 57.895 1.02 0.00 0.00 3.85
3304 8479 2.639286 CAAGCTGCAACCACGTCC 59.361 61.111 1.02 0.00 0.00 4.79
3305 8480 2.050985 GCAAGCTGCAACCACGTC 60.051 61.111 1.02 0.00 44.26 4.34
3314 8489 2.183555 GGCAAGATGGCAAGCTGC 59.816 61.111 8.94 8.94 43.14 5.25
3315 8490 0.394762 TAGGGCAAGATGGCAAGCTG 60.395 55.000 6.25 0.00 45.76 4.24
3316 8491 0.106819 CTAGGGCAAGATGGCAAGCT 60.107 55.000 6.25 0.00 45.76 3.74
3317 8492 0.394899 ACTAGGGCAAGATGGCAAGC 60.395 55.000 6.25 0.00 45.76 4.01
3318 8493 1.386533 CACTAGGGCAAGATGGCAAG 58.613 55.000 6.25 5.33 45.76 4.01
3319 8494 0.680921 GCACTAGGGCAAGATGGCAA 60.681 55.000 13.43 0.00 45.76 4.52
3320 8495 1.077501 GCACTAGGGCAAGATGGCA 60.078 57.895 13.43 0.00 45.76 4.92
3321 8496 1.825622 GGCACTAGGGCAAGATGGC 60.826 63.158 20.77 1.87 42.88 4.40
3329 8504 4.394712 ACGTGCTGGCACTAGGGC 62.395 66.667 20.97 9.01 44.16 5.19
3331 8506 2.507102 CGACGTGCTGGCACTAGG 60.507 66.667 20.97 10.07 44.16 3.02
3332 8507 1.801913 GACGACGTGCTGGCACTAG 60.802 63.158 20.97 14.49 44.16 2.57
3334 8509 3.559657 GAGACGACGTGCTGGCACT 62.560 63.158 20.97 9.98 44.16 4.40
3335 8510 3.106407 GAGACGACGTGCTGGCAC 61.106 66.667 4.58 14.86 43.01 5.01
3336 8511 4.357947 GGAGACGACGTGCTGGCA 62.358 66.667 4.58 0.00 0.00 4.92
3378 8854 2.887889 TTTTGGCGTCGGCGAACTG 61.888 57.895 20.15 5.86 41.24 3.16
3380 8856 2.426261 GTTTTGGCGTCGGCGAAC 60.426 61.111 20.15 18.69 41.24 3.95
3381 8857 2.589442 AGTTTTGGCGTCGGCGAA 60.589 55.556 16.53 16.90 41.24 4.70
3382 8858 3.342627 CAGTTTTGGCGTCGGCGA 61.343 61.111 16.53 4.99 41.24 5.54
3383 8859 3.175976 AACAGTTTTGGCGTCGGCG 62.176 57.895 14.58 4.29 41.24 6.46
3384 8860 1.657181 CAACAGTTTTGGCGTCGGC 60.657 57.895 12.58 12.58 38.90 5.54
3385 8861 0.591236 CACAACAGTTTTGGCGTCGG 60.591 55.000 0.00 0.00 0.00 4.79
3386 8862 1.199852 GCACAACAGTTTTGGCGTCG 61.200 55.000 1.64 0.00 0.00 5.12
3388 8864 1.140804 GGCACAACAGTTTTGGCGT 59.859 52.632 9.99 0.00 0.00 5.68
3389 8865 4.011046 GGCACAACAGTTTTGGCG 57.989 55.556 9.99 0.00 0.00 5.69
3390 8866 1.591327 CCGGCACAACAGTTTTGGC 60.591 57.895 14.54 14.54 0.00 4.52
3391 8867 0.174617 AACCGGCACAACAGTTTTGG 59.825 50.000 0.00 0.00 0.00 3.28
3392 8868 1.555477 GAACCGGCACAACAGTTTTG 58.445 50.000 0.00 0.00 0.00 2.44
3393 8869 0.458260 GGAACCGGCACAACAGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
3395 8871 1.077357 TGGAACCGGCACAACAGTT 60.077 52.632 0.00 0.00 0.00 3.16
3396 8872 1.525995 CTGGAACCGGCACAACAGT 60.526 57.895 0.00 0.00 0.00 3.55
3397 8873 2.908073 GCTGGAACCGGCACAACAG 61.908 63.158 18.38 4.50 46.81 3.16
3398 8874 2.904866 GCTGGAACCGGCACAACA 60.905 61.111 18.38 0.00 46.81 3.33
3417 8893 0.242555 CGGCTACCACGGCAATTTTT 59.757 50.000 0.00 0.00 0.00 1.94
3420 8896 2.437716 CCGGCTACCACGGCAATT 60.438 61.111 0.00 0.00 45.34 2.32
3426 8902 2.030958 GTTGGAACCGGCTACCACG 61.031 63.158 13.22 0.00 33.20 4.94
3427 8903 0.535553 TTGTTGGAACCGGCTACCAC 60.536 55.000 13.22 0.00 33.20 4.16
3428 8904 0.183014 TTTGTTGGAACCGGCTACCA 59.817 50.000 0.00 5.99 0.00 3.25
3447 8923 4.645692 GCGACCACGGCAATTTTT 57.354 50.000 0.00 0.00 40.15 1.94
3464 8940 1.308069 CCTGTGATTGCTGGAACCGG 61.308 60.000 0.00 0.00 0.00 5.28
3465 8941 1.308069 CCCTGTGATTGCTGGAACCG 61.308 60.000 0.00 0.00 0.00 4.44
3466 8942 0.251341 ACCCTGTGATTGCTGGAACC 60.251 55.000 0.00 0.00 0.00 3.62
3467 8943 2.489938 TACCCTGTGATTGCTGGAAC 57.510 50.000 0.00 0.00 0.00 3.62
3468 8944 3.118038 GGTATACCCTGTGATTGCTGGAA 60.118 47.826 11.17 0.00 0.00 3.53
3469 8945 2.438021 GGTATACCCTGTGATTGCTGGA 59.562 50.000 11.17 0.00 0.00 3.86
3470 8946 2.851195 GGTATACCCTGTGATTGCTGG 58.149 52.381 11.17 0.00 0.00 4.85
3483 8959 2.498885 ACTTGTCACTTCGGGGTATACC 59.501 50.000 13.99 13.99 39.11 2.73
3484 8960 3.881937 ACTTGTCACTTCGGGGTATAC 57.118 47.619 0.00 0.00 0.00 1.47
3485 8961 4.858850 TCTACTTGTCACTTCGGGGTATA 58.141 43.478 0.00 0.00 0.00 1.47
3486 8962 3.705051 TCTACTTGTCACTTCGGGGTAT 58.295 45.455 0.00 0.00 0.00 2.73
3487 8963 3.159213 TCTACTTGTCACTTCGGGGTA 57.841 47.619 0.00 0.00 0.00 3.69
3489 8965 2.353803 CCTTCTACTTGTCACTTCGGGG 60.354 54.545 0.00 0.00 0.00 5.73
3490 8966 2.353803 CCCTTCTACTTGTCACTTCGGG 60.354 54.545 0.00 0.00 0.00 5.14
3492 8968 3.367498 CCTCCCTTCTACTTGTCACTTCG 60.367 52.174 0.00 0.00 0.00 3.79
3495 8971 2.900546 CACCTCCCTTCTACTTGTCACT 59.099 50.000 0.00 0.00 0.00 3.41
3497 8973 3.254093 TCACCTCCCTTCTACTTGTCA 57.746 47.619 0.00 0.00 0.00 3.58
3498 8974 4.828072 ATTCACCTCCCTTCTACTTGTC 57.172 45.455 0.00 0.00 0.00 3.18
3499 8975 4.597507 TGAATTCACCTCCCTTCTACTTGT 59.402 41.667 3.38 0.00 0.00 3.16
3500 8976 5.165961 TGAATTCACCTCCCTTCTACTTG 57.834 43.478 3.38 0.00 0.00 3.16
3501 8977 5.339530 CCATGAATTCACCTCCCTTCTACTT 60.340 44.000 11.07 0.00 0.00 2.24
3502 8978 4.164988 CCATGAATTCACCTCCCTTCTACT 59.835 45.833 11.07 0.00 0.00 2.57
3503 8979 4.455606 CCATGAATTCACCTCCCTTCTAC 58.544 47.826 11.07 0.00 0.00 2.59
3504 8980 3.459598 CCCATGAATTCACCTCCCTTCTA 59.540 47.826 11.07 0.00 0.00 2.10
3505 8981 2.243221 CCCATGAATTCACCTCCCTTCT 59.757 50.000 11.07 0.00 0.00 2.85
3506 8982 2.659428 CCCATGAATTCACCTCCCTTC 58.341 52.381 11.07 0.00 0.00 3.46
3507 8983 1.342374 GCCCATGAATTCACCTCCCTT 60.342 52.381 11.07 0.00 0.00 3.95
3508 8984 0.259938 GCCCATGAATTCACCTCCCT 59.740 55.000 11.07 0.00 0.00 4.20
3509 8985 0.259938 AGCCCATGAATTCACCTCCC 59.740 55.000 11.07 0.00 0.00 4.30
3510 8986 1.685148 GAGCCCATGAATTCACCTCC 58.315 55.000 11.07 0.16 0.00 4.30
3511 8987 1.303309 CGAGCCCATGAATTCACCTC 58.697 55.000 11.07 12.50 0.00 3.85
3513 8989 0.749454 AGCGAGCCCATGAATTCACC 60.749 55.000 11.07 0.00 0.00 4.02
3514 8990 0.379669 CAGCGAGCCCATGAATTCAC 59.620 55.000 11.07 0.00 0.00 3.18
3515 8991 0.252761 TCAGCGAGCCCATGAATTCA 59.747 50.000 11.26 11.26 0.00 2.57
3516 8992 1.266175 CATCAGCGAGCCCATGAATTC 59.734 52.381 0.00 0.00 0.00 2.17
3518 8994 0.471191 TCATCAGCGAGCCCATGAAT 59.529 50.000 0.00 0.00 0.00 2.57
3520 8996 0.179065 CTTCATCAGCGAGCCCATGA 60.179 55.000 0.00 3.29 0.00 3.07
3521 8997 0.463295 ACTTCATCAGCGAGCCCATG 60.463 55.000 0.00 0.00 0.00 3.66
3522 8998 0.179062 GACTTCATCAGCGAGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
3523 8999 1.219124 GACTTCATCAGCGAGCCCA 59.781 57.895 0.00 0.00 0.00 5.36
3526 9002 2.287547 CCTCTAGACTTCATCAGCGAGC 60.288 54.545 0.00 0.00 0.00 5.03
3527 9003 2.293122 CCCTCTAGACTTCATCAGCGAG 59.707 54.545 0.00 0.00 0.00 5.03
3529 9005 2.302260 TCCCTCTAGACTTCATCAGCG 58.698 52.381 0.00 0.00 0.00 5.18
3531 9007 5.139727 ACTCATCCCTCTAGACTTCATCAG 58.860 45.833 0.00 0.00 0.00 2.90
3532 9008 5.136068 ACTCATCCCTCTAGACTTCATCA 57.864 43.478 0.00 0.00 0.00 3.07
3533 9009 6.279882 CAAACTCATCCCTCTAGACTTCATC 58.720 44.000 0.00 0.00 0.00 2.92
3534 9010 5.396213 GCAAACTCATCCCTCTAGACTTCAT 60.396 44.000 0.00 0.00 0.00 2.57
3535 9011 4.081420 GCAAACTCATCCCTCTAGACTTCA 60.081 45.833 0.00 0.00 0.00 3.02
3536 9012 4.438148 GCAAACTCATCCCTCTAGACTTC 58.562 47.826 0.00 0.00 0.00 3.01
3538 9014 2.769095 GGCAAACTCATCCCTCTAGACT 59.231 50.000 0.00 0.00 0.00 3.24
3546 9022 1.763968 GGTTAGGGCAAACTCATCCC 58.236 55.000 2.56 0.00 40.36 3.85
3547 9023 1.379527 CGGTTAGGGCAAACTCATCC 58.620 55.000 2.56 0.00 0.00 3.51
3548 9024 0.733150 GCGGTTAGGGCAAACTCATC 59.267 55.000 2.56 0.00 0.00 2.92
3549 9025 0.037590 TGCGGTTAGGGCAAACTCAT 59.962 50.000 2.56 0.00 37.49 2.90
3551 9027 1.940613 CTATGCGGTTAGGGCAAACTC 59.059 52.381 2.56 0.00 44.66 3.01
3552 9028 1.408266 CCTATGCGGTTAGGGCAAACT 60.408 52.381 2.56 0.00 44.66 2.66
3554 9030 3.487576 CCTATGCGGTTAGGGCAAA 57.512 52.632 0.00 0.00 44.66 3.68
3561 9037 3.117398 TCTCCTCTAACCCTATGCGGTTA 60.117 47.826 5.62 5.62 44.50 2.85
3563 9039 1.217183 TCTCCTCTAACCCTATGCGGT 59.783 52.381 0.00 0.00 37.93 5.68
3564 9040 1.996798 TCTCCTCTAACCCTATGCGG 58.003 55.000 0.00 0.00 0.00 5.69
3565 9041 4.402056 TTTTCTCCTCTAACCCTATGCG 57.598 45.455 0.00 0.00 0.00 4.73
3566 9042 5.104485 TCCTTTTTCTCCTCTAACCCTATGC 60.104 44.000 0.00 0.00 0.00 3.14
3568 9044 6.030082 TGTCCTTTTTCTCCTCTAACCCTAT 58.970 40.000 0.00 0.00 0.00 2.57
3569 9045 5.408824 TGTCCTTTTTCTCCTCTAACCCTA 58.591 41.667 0.00 0.00 0.00 3.53
3570 9046 4.240323 TGTCCTTTTTCTCCTCTAACCCT 58.760 43.478 0.00 0.00 0.00 4.34
3571 9047 4.286291 TCTGTCCTTTTTCTCCTCTAACCC 59.714 45.833 0.00 0.00 0.00 4.11
3572 9048 5.012251 ACTCTGTCCTTTTTCTCCTCTAACC 59.988 44.000 0.00 0.00 0.00 2.85
3573 9049 6.014925 AGACTCTGTCCTTTTTCTCCTCTAAC 60.015 42.308 0.00 0.00 32.18 2.34
3576 9052 4.283212 CAGACTCTGTCCTTTTTCTCCTCT 59.717 45.833 0.00 0.00 32.18 3.69
3577 9053 4.282195 TCAGACTCTGTCCTTTTTCTCCTC 59.718 45.833 5.94 0.00 32.18 3.71
3578 9054 4.227197 TCAGACTCTGTCCTTTTTCTCCT 58.773 43.478 5.94 0.00 32.18 3.69
3579 9055 4.608948 TCAGACTCTGTCCTTTTTCTCC 57.391 45.455 5.94 0.00 32.18 3.71
3580 9056 7.503521 AAAATCAGACTCTGTCCTTTTTCTC 57.496 36.000 5.94 0.00 32.18 2.87
3582 9058 8.154649 TGTAAAATCAGACTCTGTCCTTTTTC 57.845 34.615 15.44 12.79 32.18 2.29
3583 9059 7.255277 GCTGTAAAATCAGACTCTGTCCTTTTT 60.255 37.037 15.44 13.77 37.61 1.94
3584 9060 6.205658 GCTGTAAAATCAGACTCTGTCCTTTT 59.794 38.462 5.94 11.80 37.61 2.27
3585 9061 5.703130 GCTGTAAAATCAGACTCTGTCCTTT 59.297 40.000 5.94 6.88 37.61 3.11
3586 9062 5.012561 AGCTGTAAAATCAGACTCTGTCCTT 59.987 40.000 5.94 1.36 37.61 3.36
3588 9064 4.629200 CAGCTGTAAAATCAGACTCTGTCC 59.371 45.833 5.25 0.00 37.61 4.02
3590 9066 5.011533 AGTCAGCTGTAAAATCAGACTCTGT 59.988 40.000 14.67 0.00 37.61 3.41
3591 9067 5.477510 AGTCAGCTGTAAAATCAGACTCTG 58.522 41.667 14.67 0.00 37.61 3.35
3594 9070 4.284490 TGGAGTCAGCTGTAAAATCAGACT 59.716 41.667 14.67 6.10 37.61 3.24
3595 9071 4.569943 TGGAGTCAGCTGTAAAATCAGAC 58.430 43.478 14.67 0.57 37.61 3.51
3596 9072 4.890158 TGGAGTCAGCTGTAAAATCAGA 57.110 40.909 14.67 0.00 37.61 3.27
3597 9073 6.506500 AAATGGAGTCAGCTGTAAAATCAG 57.493 37.500 14.67 0.00 38.35 2.90
3598 9074 8.049117 AGATAAATGGAGTCAGCTGTAAAATCA 58.951 33.333 14.67 6.65 0.00 2.57
3599 9075 8.443953 AGATAAATGGAGTCAGCTGTAAAATC 57.556 34.615 14.67 3.02 0.00 2.17
3601 9077 7.624549 AGAGATAAATGGAGTCAGCTGTAAAA 58.375 34.615 14.67 0.00 0.00 1.52
3602 9078 7.187824 AGAGATAAATGGAGTCAGCTGTAAA 57.812 36.000 14.67 0.00 0.00 2.01
3603 9079 6.798427 AGAGATAAATGGAGTCAGCTGTAA 57.202 37.500 14.67 0.00 0.00 2.41
3604 9080 9.760926 ATATAGAGATAAATGGAGTCAGCTGTA 57.239 33.333 14.67 0.00 0.00 2.74
3605 9081 6.992664 ATAGAGATAAATGGAGTCAGCTGT 57.007 37.500 14.67 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.