Multiple sequence alignment - TraesCS7D01G116300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G116300 chr7D 100.000 9201 0 0 415 9615 71552419 71543219 0.000000e+00 16992.0
1 TraesCS7D01G116300 chr7D 86.114 2499 282 42 4063 6525 71319013 71316544 0.000000e+00 2632.0
2 TraesCS7D01G116300 chr7D 85.760 2493 311 25 1252 3732 72166670 72169130 0.000000e+00 2597.0
3 TraesCS7D01G116300 chr7D 86.381 2401 248 41 4063 6440 72169218 72171562 0.000000e+00 2549.0
4 TraesCS7D01G116300 chr7D 87.688 2128 243 10 1231 3345 70746475 70748596 0.000000e+00 2460.0
5 TraesCS7D01G116300 chr7D 87.028 2120 249 13 1247 3345 70229738 70231852 0.000000e+00 2368.0
6 TraesCS7D01G116300 chr7D 86.772 2094 257 10 1265 3338 70833343 70831250 0.000000e+00 2314.0
7 TraesCS7D01G116300 chr7D 89.813 1551 147 8 4061 5604 71337890 71336344 0.000000e+00 1978.0
8 TraesCS7D01G116300 chr7D 88.849 1103 99 17 7530 8624 71348518 71349604 0.000000e+00 1334.0
9 TraesCS7D01G116300 chr7D 91.973 735 51 4 6781 7511 71316373 71315643 0.000000e+00 1024.0
10 TraesCS7D01G116300 chr7D 87.348 822 95 7 5325 6143 71361790 71362605 0.000000e+00 933.0
11 TraesCS7D01G116300 chr7D 98.329 419 7 0 9197 9615 91672457 91672875 0.000000e+00 736.0
12 TraesCS7D01G116300 chr7D 86.589 604 67 9 8034 8626 72173719 72174319 0.000000e+00 654.0
13 TraesCS7D01G116300 chr7D 85.978 271 31 5 7675 7943 69937703 69937438 5.680000e-72 283.0
14 TraesCS7D01G116300 chr7D 100.000 140 0 0 1 140 71552833 71552694 9.580000e-65 259.0
15 TraesCS7D01G116300 chr7D 92.661 109 6 2 6570 6677 55614100 55613993 1.290000e-33 156.0
16 TraesCS7D01G116300 chr7D 89.524 105 8 2 6568 6669 3732768 3732664 7.840000e-26 130.0
17 TraesCS7D01G116300 chr7B 94.693 3618 120 23 3936 7511 14068693 14065106 0.000000e+00 5552.0
18 TraesCS7D01G116300 chr7B 93.085 2921 160 21 671 3574 14072130 14069235 0.000000e+00 4237.0
19 TraesCS7D01G116300 chr7B 86.434 2403 261 38 4063 6440 14996147 14998509 0.000000e+00 2571.0
20 TraesCS7D01G116300 chr7B 88.723 2075 213 10 1261 3316 12539543 12537471 0.000000e+00 2516.0
21 TraesCS7D01G116300 chr7B 88.255 2103 197 29 4066 6155 13869004 13866939 0.000000e+00 2470.0
22 TraesCS7D01G116300 chr7B 89.325 1630 141 22 4061 5663 13117142 13115519 0.000000e+00 2015.0
23 TraesCS7D01G116300 chr7B 89.504 1572 145 10 4061 5615 13879670 13878102 0.000000e+00 1971.0
24 TraesCS7D01G116300 chr7B 87.187 1436 155 14 4647 6081 13825245 13823838 0.000000e+00 1605.0
25 TraesCS7D01G116300 chr7B 92.469 956 58 9 7662 8616 14064731 14063789 0.000000e+00 1354.0
26 TraesCS7D01G116300 chr7B 91.819 929 65 7 7700 8624 13873797 13872876 0.000000e+00 1284.0
27 TraesCS7D01G116300 chr7B 91.862 725 50 5 6781 7501 13803315 13802596 0.000000e+00 1003.0
28 TraesCS7D01G116300 chr7B 90.336 745 53 10 6777 7511 13877129 13876394 0.000000e+00 959.0
29 TraesCS7D01G116300 chr7B 83.834 866 98 19 6686 7511 12534415 12533552 0.000000e+00 785.0
30 TraesCS7D01G116300 chr7B 83.295 874 101 21 6675 7508 12810715 12811583 0.000000e+00 763.0
31 TraesCS7D01G116300 chr7B 88.889 594 57 5 8034 8624 13859545 13858958 0.000000e+00 723.0
32 TraesCS7D01G116300 chr7B 86.261 444 49 7 7506 7943 13859990 13859553 1.130000e-128 472.0
33 TraesCS7D01G116300 chr7B 84.709 327 40 9 7619 7943 13113111 13112793 1.560000e-82 318.0
34 TraesCS7D01G116300 chr7B 84.058 276 27 10 423 681 14072450 14072175 5.770000e-62 250.0
35 TraesCS7D01G116300 chr7B 92.908 141 9 1 1 140 14072813 14072673 4.550000e-48 204.0
36 TraesCS7D01G116300 chr7B 87.879 99 9 3 6666 6763 13866492 13866396 7.890000e-21 113.0
37 TraesCS7D01G116300 chr7B 89.474 76 7 1 8644 8719 14063789 14063715 2.860000e-15 95.3
38 TraesCS7D01G116300 chrUn 92.187 3379 191 37 415 3741 84400822 84404179 0.000000e+00 4710.0
39 TraesCS7D01G116300 chrUn 95.847 2432 96 4 1170 3600 82531575 82529148 0.000000e+00 3927.0
40 TraesCS7D01G116300 chrUn 94.841 2481 96 18 3630 6103 82529150 82526695 0.000000e+00 3843.0
41 TraesCS7D01G116300 chrUn 95.344 2427 73 14 6779 9194 84246694 84244297 0.000000e+00 3819.0
42 TraesCS7D01G116300 chrUn 94.351 2195 94 18 3917 6103 84249319 84247147 0.000000e+00 3339.0
43 TraesCS7D01G116300 chrUn 97.075 1675 44 3 6779 8453 82526247 82524578 0.000000e+00 2817.0
44 TraesCS7D01G116300 chrUn 87.617 2237 234 28 4063 6269 84435575 84437798 0.000000e+00 2556.0
45 TraesCS7D01G116300 chrUn 87.183 2208 239 31 4061 6243 84238308 84236120 0.000000e+00 2470.0
46 TraesCS7D01G116300 chrUn 91.940 732 51 4 6781 7508 84438303 84439030 0.000000e+00 1018.0
47 TraesCS7D01G116300 chrUn 90.068 735 64 4 6785 7511 84284191 84283458 0.000000e+00 944.0
48 TraesCS7D01G116300 chrUn 88.416 587 51 12 8040 8624 82514507 82513936 0.000000e+00 691.0
49 TraesCS7D01G116300 chrUn 82.416 745 51 24 8438 9168 82524561 82523883 2.330000e-160 577.0
50 TraesCS7D01G116300 chrUn 92.754 207 11 4 6321 6525 84247064 84246860 7.300000e-76 296.0
51 TraesCS7D01G116300 chrUn 85.085 295 31 6 415 698 82532333 82532041 1.220000e-73 289.0
52 TraesCS7D01G116300 chrUn 91.827 208 11 5 6321 6525 82526612 82526408 1.580000e-72 285.0
53 TraesCS7D01G116300 chrUn 95.833 144 2 1 1 140 84400438 84400581 7.510000e-56 230.0
54 TraesCS7D01G116300 chrUn 92.523 107 6 2 6666 6771 84246841 84246736 1.670000e-32 152.0
55 TraesCS7D01G116300 chrUn 86.331 139 8 4 2 140 82532689 82532562 3.620000e-29 141.0
56 TraesCS7D01G116300 chrUn 89.720 107 9 2 6666 6771 82526389 82526284 1.680000e-27 135.0
57 TraesCS7D01G116300 chrUn 96.104 77 3 0 6211 6287 84247145 84247069 1.010000e-24 126.0
58 TraesCS7D01G116300 chrUn 93.506 77 5 0 6211 6287 82526693 82526617 2.190000e-21 115.0
59 TraesCS7D01G116300 chr7A 86.907 2299 240 28 4061 6337 77159306 77161565 0.000000e+00 2521.0
60 TraesCS7D01G116300 chr7A 86.813 2093 268 3 1252 3339 77157155 77159244 0.000000e+00 2329.0
61 TraesCS7D01G116300 chr7A 86.560 1808 206 28 4061 5849 77074984 77073195 0.000000e+00 1958.0
62 TraesCS7D01G116300 chr7A 90.476 105 7 2 6568 6669 2852806 2852702 1.680000e-27 135.0
63 TraesCS7D01G116300 chr2B 88.698 2097 189 32 4066 6155 723395266 723393211 0.000000e+00 2516.0
64 TraesCS7D01G116300 chr2B 89.313 1572 148 12 4061 5615 723403598 723402030 0.000000e+00 1954.0
65 TraesCS7D01G116300 chr2B 91.712 929 71 5 7700 8624 723399736 723398810 0.000000e+00 1284.0
66 TraesCS7D01G116300 chr2B 90.860 744 53 7 6777 7511 723401068 723400331 0.000000e+00 983.0
67 TraesCS7D01G116300 chr2B 90.315 413 38 2 9197 9607 666490998 666491410 3.050000e-149 540.0
68 TraesCS7D01G116300 chr2B 85.812 437 50 6 7513 7943 723388532 723388102 4.090000e-123 453.0
69 TraesCS7D01G116300 chr2B 89.796 147 15 0 8478 8624 723387688 723387542 1.270000e-43 189.0
70 TraesCS7D01G116300 chr2B 87.850 107 10 3 6666 6771 723392771 723392667 1.310000e-23 122.0
71 TraesCS7D01G116300 chr1A 81.238 2052 302 54 4508 6517 21775072 21773062 0.000000e+00 1580.0
72 TraesCS7D01G116300 chr5D 97.136 419 12 0 9197 9615 536915377 536914959 0.000000e+00 708.0
73 TraesCS7D01G116300 chr3D 97.579 413 10 0 9197 9609 581760299 581759887 0.000000e+00 708.0
74 TraesCS7D01G116300 chr4D 95.714 420 16 2 9197 9615 281745979 281746397 0.000000e+00 675.0
75 TraesCS7D01G116300 chr2D 95.238 420 19 1 9197 9615 259741292 259741711 0.000000e+00 664.0
76 TraesCS7D01G116300 chr2D 91.408 419 15 1 9197 9615 479907246 479907643 1.090000e-153 555.0
77 TraesCS7D01G116300 chr2D 85.321 109 13 3 6568 6673 7115268 7115376 1.020000e-19 110.0
78 TraesCS7D01G116300 chr6D 86.351 359 35 8 9199 9545 267139437 267139081 7.050000e-101 379.0
79 TraesCS7D01G116300 chr6D 80.932 236 26 7 3395 3629 304112443 304112226 1.660000e-37 169.0
80 TraesCS7D01G116300 chr6D 76.216 185 36 7 3447 3629 331253493 331253315 3.700000e-14 91.6
81 TraesCS7D01G116300 chr6B 80.247 243 26 9 3389 3629 469784352 469784130 7.730000e-36 163.0
82 TraesCS7D01G116300 chr3B 95.745 94 4 0 6578 6671 686026098 686026005 1.670000e-32 152.0
83 TraesCS7D01G116300 chr3B 90.741 108 8 2 6578 6683 686046155 686046048 1.010000e-29 143.0
84 TraesCS7D01G116300 chr3B 89.474 95 10 0 6568 6662 425684376 425684282 4.720000e-23 121.0
85 TraesCS7D01G116300 chr4B 92.079 101 8 0 6570 6670 25390438 25390538 1.010000e-29 143.0
86 TraesCS7D01G116300 chr1B 92.857 98 3 3 6568 6662 331129624 331129528 1.300000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G116300 chr7D 71543219 71552833 9614 True 8625.500000 16992 100.000000 1 9615 2 chr7D.!!$R7 9614
1 TraesCS7D01G116300 chr7D 70746475 70748596 2121 False 2460.000000 2460 87.688000 1231 3345 1 chr7D.!!$F2 2114
2 TraesCS7D01G116300 chr7D 70229738 70231852 2114 False 2368.000000 2368 87.028000 1247 3345 1 chr7D.!!$F1 2098
3 TraesCS7D01G116300 chr7D 70831250 70833343 2093 True 2314.000000 2314 86.772000 1265 3338 1 chr7D.!!$R4 2073
4 TraesCS7D01G116300 chr7D 71336344 71337890 1546 True 1978.000000 1978 89.813000 4061 5604 1 chr7D.!!$R5 1543
5 TraesCS7D01G116300 chr7D 72166670 72174319 7649 False 1933.333333 2597 86.243333 1252 8626 3 chr7D.!!$F6 7374
6 TraesCS7D01G116300 chr7D 71315643 71319013 3370 True 1828.000000 2632 89.043500 4063 7511 2 chr7D.!!$R6 3448
7 TraesCS7D01G116300 chr7D 71348518 71349604 1086 False 1334.000000 1334 88.849000 7530 8624 1 chr7D.!!$F3 1094
8 TraesCS7D01G116300 chr7D 71361790 71362605 815 False 933.000000 933 87.348000 5325 6143 1 chr7D.!!$F4 818
9 TraesCS7D01G116300 chr7B 14996147 14998509 2362 False 2571.000000 2571 86.434000 4063 6440 1 chr7B.!!$F2 2377
10 TraesCS7D01G116300 chr7B 14063715 14072813 9098 True 1948.716667 5552 91.114500 1 8719 6 chr7B.!!$R7 8718
11 TraesCS7D01G116300 chr7B 12533552 12539543 5991 True 1650.500000 2516 86.278500 1261 7511 2 chr7B.!!$R3 6250
12 TraesCS7D01G116300 chr7B 13823838 13825245 1407 True 1605.000000 1605 87.187000 4647 6081 1 chr7B.!!$R2 1434
13 TraesCS7D01G116300 chr7B 13866396 13879670 13274 True 1359.400000 2470 89.558600 4061 8624 5 chr7B.!!$R6 4563
14 TraesCS7D01G116300 chr7B 13112793 13117142 4349 True 1166.500000 2015 87.017000 4061 7943 2 chr7B.!!$R4 3882
15 TraesCS7D01G116300 chr7B 13802596 13803315 719 True 1003.000000 1003 91.862000 6781 7501 1 chr7B.!!$R1 720
16 TraesCS7D01G116300 chr7B 12810715 12811583 868 False 763.000000 763 83.295000 6675 7508 1 chr7B.!!$F1 833
17 TraesCS7D01G116300 chr7B 13858958 13859990 1032 True 597.500000 723 87.575000 7506 8624 2 chr7B.!!$R5 1118
18 TraesCS7D01G116300 chrUn 84236120 84238308 2188 True 2470.000000 2470 87.183000 4061 6243 1 chrUn.!!$R2 2182
19 TraesCS7D01G116300 chrUn 84400438 84404179 3741 False 2470.000000 4710 94.010000 1 3741 2 chrUn.!!$F1 3740
20 TraesCS7D01G116300 chrUn 84435575 84439030 3455 False 1787.000000 2556 89.778500 4063 7508 2 chrUn.!!$F2 3445
21 TraesCS7D01G116300 chrUn 84244297 84249319 5022 True 1546.400000 3819 94.215200 3917 9194 5 chrUn.!!$R5 5277
22 TraesCS7D01G116300 chrUn 82523883 82532689 8806 True 1347.666667 3927 90.738667 2 9168 9 chrUn.!!$R4 9166
23 TraesCS7D01G116300 chrUn 84283458 84284191 733 True 944.000000 944 90.068000 6785 7511 1 chrUn.!!$R3 726
24 TraesCS7D01G116300 chrUn 82513936 82514507 571 True 691.000000 691 88.416000 8040 8624 1 chrUn.!!$R1 584
25 TraesCS7D01G116300 chr7A 77157155 77161565 4410 False 2425.000000 2521 86.860000 1252 6337 2 chr7A.!!$F1 5085
26 TraesCS7D01G116300 chr7A 77073195 77074984 1789 True 1958.000000 1958 86.560000 4061 5849 1 chr7A.!!$R2 1788
27 TraesCS7D01G116300 chr2B 723392667 723403598 10931 True 1371.800000 2516 89.686600 4061 8624 5 chr2B.!!$R2 4563
28 TraesCS7D01G116300 chr2B 723387542 723388532 990 True 321.000000 453 87.804000 7513 8624 2 chr2B.!!$R1 1111
29 TraesCS7D01G116300 chr1A 21773062 21775072 2010 True 1580.000000 1580 81.238000 4508 6517 1 chr1A.!!$R1 2009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 462 2.350134 GTCCGGGGTTCCTGTTCC 59.650 66.667 0.00 0.0 0.00 3.62 F
1007 1113 0.179001 TCGATCGGACAGATGGGCTA 60.179 55.000 16.41 0.0 40.26 3.93 F
1998 2146 0.240945 CAGGATGTCGTTTTGGTGGC 59.759 55.000 0.00 0.0 0.00 5.01 F
3753 3919 0.038251 TGGCGCTTGACAGAGTACAG 60.038 55.000 7.64 0.0 0.00 2.74 F
3915 4081 0.681175 ATTGTGCAGCACCTTTTCCC 59.319 50.000 23.06 0.0 32.73 3.97 F
5312 5779 1.767088 GAAGGGTTCTTAGCCGGGTAT 59.233 52.381 15.31 0.0 46.76 2.73 F
5693 6618 0.109039 GTCTGAGAGTGAACGAGCCC 60.109 60.000 0.00 0.0 0.00 5.19 F
6051 6981 1.993301 ACTTTTAGCCCTGGTAAGCCT 59.007 47.619 0.00 0.0 35.27 4.58 F
7293 9430 0.953960 GTCTTGTTGAACCCGCCGAT 60.954 55.000 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1627 0.530650 ACTGAACACCACAGCAGACG 60.531 55.000 0.00 0.0 38.74 4.18 R
2177 2325 0.613260 AGACCAAGATGGCACGCTTA 59.387 50.000 4.36 0.0 42.67 3.09 R
3772 3938 0.881796 GGAAGGTTGCCTTGTAGCAC 59.118 55.000 5.01 0.0 44.82 4.40 R
5687 6612 0.109597 GAATGCAAACTGTGGGCTCG 60.110 55.000 0.00 0.0 0.00 5.03 R
5693 6618 5.342433 TGAGAACTTTGAATGCAAACTGTG 58.658 37.500 0.00 0.0 38.99 3.66 R
6616 8621 1.073177 AAAGCAATACGACCGAACCG 58.927 50.000 0.00 0.0 0.00 4.44 R
7293 9430 8.998814 TCCACAGAGTCTATAATTATTTTCCCA 58.001 33.333 2.68 0.0 0.00 4.37 R
7948 13135 0.617820 ACCGCACCCTCCTCTATTGT 60.618 55.000 0.00 0.0 0.00 2.71 R
9262 20465 0.170339 GGCATTTTCGGAAACTCGGG 59.830 55.000 1.96 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
452 462 2.350134 GTCCGGGGTTCCTGTTCC 59.650 66.667 0.00 0.00 0.00 3.62
458 468 4.324991 GGTTCCTGTTCCGGCCGT 62.325 66.667 26.12 0.00 0.00 5.68
460 470 4.323477 TTCCTGTTCCGGCCGTGG 62.323 66.667 26.12 16.97 0.00 4.94
635 661 2.740714 GCGATTCGCGGCTCTTGTT 61.741 57.895 16.11 0.00 44.55 2.83
651 677 7.594758 CGGCTCTTGTTGATTTTATTTTTCTCA 59.405 33.333 0.00 0.00 0.00 3.27
655 681 9.260002 TCTTGTTGATTTTATTTTTCTCAAGCC 57.740 29.630 0.00 0.00 31.84 4.35
656 682 8.954950 TTGTTGATTTTATTTTTCTCAAGCCA 57.045 26.923 0.00 0.00 0.00 4.75
657 683 8.592105 TGTTGATTTTATTTTTCTCAAGCCAG 57.408 30.769 0.00 0.00 0.00 4.85
658 684 8.420222 TGTTGATTTTATTTTTCTCAAGCCAGA 58.580 29.630 0.00 0.00 0.00 3.86
659 685 8.919661 GTTGATTTTATTTTTCTCAAGCCAGAG 58.080 33.333 0.00 0.00 36.97 3.35
724 810 4.717629 CGAACGGTGAGGCGCTCA 62.718 66.667 7.64 6.39 38.25 4.26
808 895 3.756434 TGGATTGTTTTCCGTGGAATCTC 59.244 43.478 1.47 0.00 38.74 2.75
844 942 3.242123 CGCTAGCGTTTTTCAGGAGATTC 60.242 47.826 28.66 0.00 34.35 2.52
863 961 4.884668 TTCTGTTCCTTGTCCGTATCTT 57.115 40.909 0.00 0.00 0.00 2.40
917 1015 2.892852 TGCTTTCTTCCTTTGACCATGG 59.107 45.455 11.19 11.19 0.00 3.66
918 1016 2.893489 GCTTTCTTCCTTTGACCATGGT 59.107 45.455 19.89 19.89 0.00 3.55
995 1101 4.657055 GATACATCAGTGAGATCGATCGG 58.343 47.826 19.33 8.42 33.72 4.18
1005 1111 0.389166 GATCGATCGGACAGATGGGC 60.389 60.000 16.41 0.00 40.26 5.36
1007 1113 0.179001 TCGATCGGACAGATGGGCTA 60.179 55.000 16.41 0.00 40.26 3.93
1015 1121 1.555075 GACAGATGGGCTACCTCACAA 59.445 52.381 0.00 0.00 37.76 3.33
1020 1126 4.040755 AGATGGGCTACCTCACAAGTAAT 58.959 43.478 0.00 0.00 37.76 1.89
1059 1165 9.764363 ACCTCCTCATTTTAAAATTCTGTTTTC 57.236 29.630 10.77 0.00 0.00 2.29
1060 1166 9.762933 CCTCCTCATTTTAAAATTCTGTTTTCA 57.237 29.630 10.77 0.00 0.00 2.69
1111 1220 1.538512 CTTGCTGACCATCAACCACTG 59.461 52.381 0.00 0.00 0.00 3.66
1115 1225 2.575532 CTGACCATCAACCACTGTGTT 58.424 47.619 7.08 0.00 0.00 3.32
1118 1229 1.214175 ACCATCAACCACTGTGTTGGA 59.786 47.619 17.08 4.45 44.51 3.53
1128 1239 1.152777 TGTGTTGGAGGGTTGCCAG 60.153 57.895 0.00 0.00 36.64 4.85
1139 1250 1.546029 GGGTTGCCAGAACTGAAATCC 59.454 52.381 3.19 4.04 0.00 3.01
1143 1254 1.339055 TGCCAGAACTGAAATCCGGAG 60.339 52.381 11.34 0.00 0.00 4.63
1150 1261 4.467795 AGAACTGAAATCCGGAGATCTCAA 59.532 41.667 23.85 9.37 29.06 3.02
1151 1262 4.399004 ACTGAAATCCGGAGATCTCAAG 57.601 45.455 23.85 16.19 29.06 3.02
1152 1263 4.026744 ACTGAAATCCGGAGATCTCAAGA 58.973 43.478 23.85 18.66 29.06 3.02
1153 1264 4.653341 ACTGAAATCCGGAGATCTCAAGAT 59.347 41.667 23.85 19.93 29.06 2.40
1165 1276 5.186996 GATCTCAAGATCTCACCTCACTC 57.813 47.826 11.89 0.00 45.60 3.51
1166 1277 4.314522 TCTCAAGATCTCACCTCACTCT 57.685 45.455 0.00 0.00 0.00 3.24
1167 1278 5.443230 TCTCAAGATCTCACCTCACTCTA 57.557 43.478 0.00 0.00 0.00 2.43
1168 1279 6.012337 TCTCAAGATCTCACCTCACTCTAT 57.988 41.667 0.00 0.00 0.00 1.98
1211 1322 2.187351 TAATTTTGCAGATTCGGCGC 57.813 45.000 0.00 0.00 0.00 6.53
1243 1354 7.716799 AACTGAAATCTCATCTCACTCTAGT 57.283 36.000 0.00 0.00 0.00 2.57
1244 1355 8.815565 AACTGAAATCTCATCTCACTCTAGTA 57.184 34.615 0.00 0.00 0.00 1.82
1245 1356 8.220755 ACTGAAATCTCATCTCACTCTAGTAC 57.779 38.462 0.00 0.00 0.00 2.73
1821 1963 0.847373 TTTGTCCCTACCAGGTGCAA 59.153 50.000 0.76 0.00 31.93 4.08
1875 2017 1.639722 TGACGAAGAGGGTCATGGAA 58.360 50.000 0.00 0.00 39.36 3.53
1998 2146 0.240945 CAGGATGTCGTTTTGGTGGC 59.759 55.000 0.00 0.00 0.00 5.01
2177 2325 7.453393 TCTTCTGGACTATTGTTTCTTGTCAT 58.547 34.615 0.00 0.00 0.00 3.06
2216 2364 1.202710 TCGGGTTTCTGTGCTTTGCTA 60.203 47.619 0.00 0.00 0.00 3.49
2582 2730 0.038892 AACTTTGCATTGCTCTGGCG 60.039 50.000 10.49 0.00 42.25 5.69
2840 2988 4.207165 AGTACAAGTGGTTGACAGCATTT 58.793 39.130 0.00 0.00 37.10 2.32
3212 3360 4.081406 ACATAAATCTGGCAGTCAAAGCA 58.919 39.130 15.27 0.00 0.00 3.91
3278 3426 1.068585 GCTTTTGGCTGCTGTGCTT 59.931 52.632 0.00 0.00 38.06 3.91
3461 3622 7.812309 AGTTTCTAGTTTTTGCAACTGAAAC 57.188 32.000 21.77 21.77 41.65 2.78
3617 3780 4.003788 CCACCGCCAACTCCGAGT 62.004 66.667 0.00 0.00 0.00 4.18
3741 3907 2.095919 GTCGTTATGAAAGTTGGCGCTT 60.096 45.455 7.64 0.00 0.00 4.68
3753 3919 0.038251 TGGCGCTTGACAGAGTACAG 60.038 55.000 7.64 0.00 0.00 2.74
3772 3938 1.337821 GAGTTTACTCTGCACGGTCG 58.662 55.000 2.66 0.00 39.81 4.79
3784 3950 2.048597 CGGTCGTGCTACAAGGCA 60.049 61.111 0.00 0.00 40.15 4.75
3833 3999 2.106338 TCCTGCAAGTTCACATGGAAGA 59.894 45.455 0.00 0.00 35.82 2.87
3834 4000 2.886523 CCTGCAAGTTCACATGGAAGAA 59.113 45.455 0.00 0.00 35.82 2.52
3835 4001 3.057736 CCTGCAAGTTCACATGGAAGAAG 60.058 47.826 0.00 0.00 35.82 2.85
3887 4053 0.811616 CTAGCTGGCCGTCATGAACC 60.812 60.000 0.00 0.00 0.00 3.62
3888 4054 1.549243 TAGCTGGCCGTCATGAACCA 61.549 55.000 11.68 11.68 0.00 3.67
3897 4063 2.019249 CGTCATGAACCATTGCTGGAT 58.981 47.619 0.00 0.00 46.37 3.41
3900 4066 3.194116 GTCATGAACCATTGCTGGATTGT 59.806 43.478 0.00 0.00 46.37 2.71
3904 4070 0.892755 ACCATTGCTGGATTGTGCAG 59.107 50.000 0.00 0.00 46.37 4.41
3913 4079 1.340889 TGGATTGTGCAGCACCTTTTC 59.659 47.619 23.06 13.11 32.73 2.29
3915 4081 0.681175 ATTGTGCAGCACCTTTTCCC 59.319 50.000 23.06 0.00 32.73 3.97
4006 4365 7.613585 TGTTCATGCCTTTTCAATACAATGAT 58.386 30.769 0.00 0.00 0.00 2.45
4194 4571 4.631813 ACCGTGCAAGACAATATTCTCTTC 59.368 41.667 0.00 1.14 0.00 2.87
4203 4580 3.069586 ACAATATTCTCTTCGGATCGCCA 59.930 43.478 0.00 0.00 0.00 5.69
4404 4781 3.603532 TGATGATCCTTTCAGTGCTGTC 58.396 45.455 0.00 0.00 37.89 3.51
4966 5433 2.640332 AGAGGAAAGAGAAACAGGGGAC 59.360 50.000 0.00 0.00 0.00 4.46
5198 5665 4.265904 TCAAGATCTTTGGCAGTCGTTA 57.734 40.909 4.86 0.00 0.00 3.18
5312 5779 1.767088 GAAGGGTTCTTAGCCGGGTAT 59.233 52.381 15.31 0.00 46.76 2.73
5687 6612 4.094887 TGCTGTTTTTGTCTGAGAGTGAAC 59.905 41.667 0.00 0.00 0.00 3.18
5693 6618 0.109039 GTCTGAGAGTGAACGAGCCC 60.109 60.000 0.00 0.00 0.00 5.19
5891 6821 8.023706 GGAAGAAGATCGTTTCTTTGCTAAAAT 58.976 33.333 10.37 0.00 45.00 1.82
6050 6980 2.509166 ACTTTTAGCCCTGGTAAGCC 57.491 50.000 0.00 0.00 0.00 4.35
6051 6981 1.993301 ACTTTTAGCCCTGGTAAGCCT 59.007 47.619 0.00 0.00 35.27 4.58
6354 7666 8.150945 AGAAAACTAGAAGAGAGTTGTATTGCA 58.849 33.333 0.00 0.00 37.22 4.08
6546 8551 8.848948 TGCAATATGGTGAATATAAAAACACG 57.151 30.769 0.00 0.00 34.59 4.49
6566 8571 5.584649 ACACGACTTTGTATGGTGAATATGG 59.415 40.000 0.00 0.00 33.08 2.74
6578 8583 9.950680 GTATGGTGAATATGGTGTTTATCTTTG 57.049 33.333 0.00 0.00 0.00 2.77
6601 8606 2.039879 TCTGCTTTGTAAGAGGGTTCCC 59.960 50.000 0.00 0.00 0.00 3.97
6616 8621 3.344515 GGTTCCCTCACCACTTTGTATC 58.655 50.000 0.00 0.00 36.73 2.24
6621 8626 3.000727 CCTCACCACTTTGTATCGGTTC 58.999 50.000 0.00 0.00 0.00 3.62
7293 9430 0.953960 GTCTTGTTGAACCCGCCGAT 60.954 55.000 0.00 0.00 0.00 4.18
7610 12678 3.882888 TGTAAAGCCACACCTCTTGAAAG 59.117 43.478 0.00 0.00 0.00 2.62
7893 13078 6.169419 TCAGAAATTGAAATAGCTGTGACG 57.831 37.500 0.00 0.00 31.34 4.35
7948 13135 6.726490 ATTAGTCCTAGGCGTATTCTTCAA 57.274 37.500 2.96 0.00 0.00 2.69
7988 13182 1.071071 CCCAAGTACTTCGAACCCACA 59.929 52.381 4.77 0.00 0.00 4.17
8276 13526 5.640732 ACAGAATTCAAATATTGCACCGTC 58.359 37.500 8.44 0.00 0.00 4.79
8434 13689 8.641498 ACCTGAACCAATCAATATGGAATATC 57.359 34.615 0.00 0.00 38.94 1.63
8510 13810 8.103305 GCTATATATGAACATTTCCAGGGAGAA 58.897 37.037 0.00 0.00 0.00 2.87
8548 13848 3.074412 ACCTACAAAGCTCATGGAAACG 58.926 45.455 4.67 0.00 0.00 3.60
8626 13926 8.068892 ACGGAAATATTTAGAAGAGACTGTCT 57.931 34.615 10.66 10.66 36.94 3.41
8637 13937 5.786264 AAGAGACTGTCTTCCGTTTTAGA 57.214 39.130 12.27 0.00 42.26 2.10
8638 13938 5.786264 AGAGACTGTCTTCCGTTTTAGAA 57.214 39.130 12.27 0.00 27.07 2.10
8639 13939 6.158023 AGAGACTGTCTTCCGTTTTAGAAA 57.842 37.500 12.27 0.00 27.07 2.52
8640 13940 6.579865 AGAGACTGTCTTCCGTTTTAGAAAA 58.420 36.000 12.27 0.00 27.07 2.29
8641 13941 7.046033 AGAGACTGTCTTCCGTTTTAGAAAAA 58.954 34.615 12.27 0.00 27.07 1.94
8695 13995 6.215845 TGCAGCTTTCCAAGAAATAAAAGAC 58.784 36.000 0.00 0.00 31.81 3.01
8701 14001 8.427774 GCTTTCCAAGAAATAAAAGACAAATCG 58.572 33.333 0.00 0.00 31.81 3.34
8736 14037 6.842437 ATAGTGCCACGACTGAAGATATAT 57.158 37.500 0.00 0.00 0.00 0.86
8813 14128 8.515414 ACTATTTATTGTCTGGCAGTTTCTTTC 58.485 33.333 15.27 0.00 0.00 2.62
8902 14227 5.104900 GCAGAGTAAACCCCTGAAGAGATAA 60.105 44.000 0.00 0.00 0.00 1.75
8944 14278 6.435277 AGGTACTTCAAATCTACAACCTACGA 59.565 38.462 0.00 0.00 34.40 3.43
8948 14282 7.383687 ACTTCAAATCTACAACCTACGAATGA 58.616 34.615 0.00 0.00 0.00 2.57
8993 14328 2.263077 GCTGACAGTGTTATGGTCGAG 58.737 52.381 3.99 0.00 34.32 4.04
8994 14329 2.352814 GCTGACAGTGTTATGGTCGAGT 60.353 50.000 3.99 0.00 34.32 4.18
8995 14330 3.502920 CTGACAGTGTTATGGTCGAGTC 58.497 50.000 0.00 0.00 34.32 3.36
8996 14331 2.095415 TGACAGTGTTATGGTCGAGTCG 60.095 50.000 6.09 6.09 34.32 4.18
8997 14332 1.884579 ACAGTGTTATGGTCGAGTCGT 59.115 47.619 13.12 0.00 0.00 4.34
8998 14333 2.295349 ACAGTGTTATGGTCGAGTCGTT 59.705 45.455 13.12 0.00 0.00 3.85
8999 14334 3.243636 ACAGTGTTATGGTCGAGTCGTTT 60.244 43.478 13.12 0.00 0.00 3.60
9000 14335 3.121279 CAGTGTTATGGTCGAGTCGTTTG 59.879 47.826 13.12 0.00 0.00 2.93
9001 14336 3.054878 GTGTTATGGTCGAGTCGTTTGT 58.945 45.455 13.12 0.73 0.00 2.83
9002 14337 3.120782 GTGTTATGGTCGAGTCGTTTGTC 59.879 47.826 13.12 0.00 0.00 3.18
9003 14338 2.251869 TATGGTCGAGTCGTTTGTCG 57.748 50.000 13.12 0.00 41.41 4.35
9004 14339 0.594602 ATGGTCGAGTCGTTTGTCGA 59.405 50.000 13.12 0.00 46.83 4.20
9049 14405 6.037172 CCACATCATTTACAGTAGCTTGGTAC 59.963 42.308 0.00 2.14 0.00 3.34
9106 14462 8.617290 AGGTTTCAGACTACGAAATGTAAATT 57.383 30.769 0.00 0.00 35.01 1.82
9194 19943 3.770933 ACTGCCTTTCCATATTGCAATGT 59.229 39.130 22.27 12.90 0.00 2.71
9195 19944 4.955450 ACTGCCTTTCCATATTGCAATGTA 59.045 37.500 22.27 2.95 0.00 2.29
9204 20407 5.368230 TCCATATTGCAATGTACCCTCTGTA 59.632 40.000 22.27 0.00 0.00 2.74
9220 20423 8.026396 ACCCTCTGTACCAAAATATATAACGT 57.974 34.615 0.00 0.00 0.00 3.99
9222 20425 9.333724 CCCTCTGTACCAAAATATATAACGTTT 57.666 33.333 5.91 0.00 0.00 3.60
9239 20442 8.861033 ATAACGTTTTAGCGATCATAGTGTAA 57.139 30.769 5.91 0.00 35.59 2.41
9240 20443 7.585286 AACGTTTTAGCGATCATAGTGTAAA 57.415 32.000 0.00 0.00 35.59 2.01
9241 20444 7.766219 ACGTTTTAGCGATCATAGTGTAAAT 57.234 32.000 0.00 0.00 35.59 1.40
9243 20446 7.705325 ACGTTTTAGCGATCATAGTGTAAATCT 59.295 33.333 0.00 0.00 35.59 2.40
9244 20447 7.998767 CGTTTTAGCGATCATAGTGTAAATCTG 59.001 37.037 0.00 0.00 0.00 2.90
9245 20448 7.946655 TTTAGCGATCATAGTGTAAATCTGG 57.053 36.000 0.00 0.00 0.00 3.86
9246 20449 4.310769 AGCGATCATAGTGTAAATCTGGC 58.689 43.478 0.00 0.00 0.00 4.85
9248 20451 5.243954 AGCGATCATAGTGTAAATCTGGCTA 59.756 40.000 0.00 0.00 0.00 3.93
9249 20452 5.346281 GCGATCATAGTGTAAATCTGGCTAC 59.654 44.000 0.00 0.00 0.00 3.58
9250 20453 5.569441 CGATCATAGTGTAAATCTGGCTACG 59.431 44.000 0.00 0.00 0.00 3.51
9251 20454 5.847111 TCATAGTGTAAATCTGGCTACGT 57.153 39.130 0.00 0.00 0.00 3.57
9252 20455 6.216801 TCATAGTGTAAATCTGGCTACGTT 57.783 37.500 0.00 0.00 0.00 3.99
9253 20456 7.337480 TCATAGTGTAAATCTGGCTACGTTA 57.663 36.000 0.00 0.00 0.00 3.18
9254 20457 7.198390 TCATAGTGTAAATCTGGCTACGTTAC 58.802 38.462 0.00 0.00 0.00 2.50
9255 20458 4.418392 AGTGTAAATCTGGCTACGTTACG 58.582 43.478 2.19 2.19 0.00 3.18
9257 20460 4.858692 GTGTAAATCTGGCTACGTTACGAA 59.141 41.667 13.03 0.00 0.00 3.85
9258 20461 5.345741 GTGTAAATCTGGCTACGTTACGAAA 59.654 40.000 13.03 0.00 0.00 3.46
9259 20462 4.916099 AAATCTGGCTACGTTACGAAAC 57.084 40.909 13.03 0.00 0.00 2.78
9260 20463 3.863142 ATCTGGCTACGTTACGAAACT 57.137 42.857 13.03 0.00 33.15 2.66
9262 20465 3.568538 TCTGGCTACGTTACGAAACTTC 58.431 45.455 13.03 0.00 33.15 3.01
9263 20466 2.665052 CTGGCTACGTTACGAAACTTCC 59.335 50.000 13.03 4.25 33.15 3.46
9265 20468 1.650645 GCTACGTTACGAAACTTCCCG 59.349 52.381 13.03 0.00 33.15 5.14
9266 20469 2.668279 GCTACGTTACGAAACTTCCCGA 60.668 50.000 13.03 0.00 33.15 5.14
9267 20470 2.056094 ACGTTACGAAACTTCCCGAG 57.944 50.000 13.03 0.00 33.15 4.63
9276 20479 2.625695 AACTTCCCGAGTTTCCGAAA 57.374 45.000 0.00 0.00 46.34 3.46
9278 20481 3.136009 ACTTCCCGAGTTTCCGAAAAT 57.864 42.857 0.00 0.00 33.92 1.82
9279 20482 2.812011 ACTTCCCGAGTTTCCGAAAATG 59.188 45.455 0.00 0.00 33.92 2.32
9280 20483 1.161843 TCCCGAGTTTCCGAAAATGC 58.838 50.000 0.00 0.00 0.00 3.56
9281 20484 0.170339 CCCGAGTTTCCGAAAATGCC 59.830 55.000 0.00 0.00 0.00 4.40
9282 20485 0.170339 CCGAGTTTCCGAAAATGCCC 59.830 55.000 0.00 0.00 0.00 5.36
9283 20486 1.165270 CGAGTTTCCGAAAATGCCCT 58.835 50.000 0.00 0.00 0.00 5.19
9284 20487 1.130561 CGAGTTTCCGAAAATGCCCTC 59.869 52.381 0.00 0.00 0.00 4.30
9285 20488 1.472878 GAGTTTCCGAAAATGCCCTCC 59.527 52.381 0.00 0.00 0.00 4.30
9286 20489 0.530744 GTTTCCGAAAATGCCCTCCC 59.469 55.000 0.00 0.00 0.00 4.30
9287 20490 0.113385 TTTCCGAAAATGCCCTCCCA 59.887 50.000 0.00 0.00 0.00 4.37
9288 20491 0.610785 TTCCGAAAATGCCCTCCCAC 60.611 55.000 0.00 0.00 0.00 4.61
9289 20492 2.052104 CCGAAAATGCCCTCCCACC 61.052 63.158 0.00 0.00 0.00 4.61
9291 20494 1.315257 CGAAAATGCCCTCCCACCTG 61.315 60.000 0.00 0.00 0.00 4.00
9292 20495 1.607801 GAAAATGCCCTCCCACCTGC 61.608 60.000 0.00 0.00 0.00 4.85
9293 20496 3.607084 AAATGCCCTCCCACCTGCC 62.607 63.158 0.00 0.00 0.00 4.85
9298 20501 3.721706 CCTCCCACCTGCCCACTC 61.722 72.222 0.00 0.00 0.00 3.51
9299 20502 3.721706 CTCCCACCTGCCCACTCC 61.722 72.222 0.00 0.00 0.00 3.85
9303 20506 2.273449 CACCTGCCCACTCCCATC 59.727 66.667 0.00 0.00 0.00 3.51
9304 20507 3.017581 ACCTGCCCACTCCCATCC 61.018 66.667 0.00 0.00 0.00 3.51
9306 20509 2.273449 CTGCCCACTCCCATCCAC 59.727 66.667 0.00 0.00 0.00 4.02
9309 20512 1.379044 GCCCACTCCCATCCACTTG 60.379 63.158 0.00 0.00 0.00 3.16
9311 20514 1.687612 CCACTCCCATCCACTTGCT 59.312 57.895 0.00 0.00 0.00 3.91
9312 20515 0.679002 CCACTCCCATCCACTTGCTG 60.679 60.000 0.00 0.00 0.00 4.41
9315 20518 2.757099 CCCATCCACTTGCTGCCC 60.757 66.667 0.00 0.00 0.00 5.36
9317 20520 2.345760 CCATCCACTTGCTGCCCAC 61.346 63.158 0.00 0.00 0.00 4.61
9319 20522 1.001641 ATCCACTTGCTGCCCACTC 60.002 57.895 0.00 0.00 0.00 3.51
9321 20524 1.673665 CCACTTGCTGCCCACTCTC 60.674 63.158 0.00 0.00 0.00 3.20
9322 20525 1.071987 CACTTGCTGCCCACTCTCA 59.928 57.895 0.00 0.00 0.00 3.27
9323 20526 1.072159 ACTTGCTGCCCACTCTCAC 59.928 57.895 0.00 0.00 0.00 3.51
9325 20528 3.196207 TTGCTGCCCACTCTCACCC 62.196 63.158 0.00 0.00 0.00 4.61
9327 20530 2.348998 CTGCCCACTCTCACCCAC 59.651 66.667 0.00 0.00 0.00 4.61
9329 20532 2.032681 GCCCACTCTCACCCACAC 59.967 66.667 0.00 0.00 0.00 3.82
9331 20534 2.750350 CCACTCTCACCCACACCC 59.250 66.667 0.00 0.00 0.00 4.61
9332 20535 1.843376 CCACTCTCACCCACACCCT 60.843 63.158 0.00 0.00 0.00 4.34
9335 20538 0.543174 ACTCTCACCCACACCCTCTC 60.543 60.000 0.00 0.00 0.00 3.20
9336 20539 0.542938 CTCTCACCCACACCCTCTCA 60.543 60.000 0.00 0.00 0.00 3.27
9338 20541 0.987294 CTCACCCACACCCTCTCATT 59.013 55.000 0.00 0.00 0.00 2.57
9339 20542 0.984230 TCACCCACACCCTCTCATTC 59.016 55.000 0.00 0.00 0.00 2.67
9340 20543 0.035056 CACCCACACCCTCTCATTCC 60.035 60.000 0.00 0.00 0.00 3.01
9341 20544 1.208165 ACCCACACCCTCTCATTCCC 61.208 60.000 0.00 0.00 0.00 3.97
9342 20545 1.609783 CCACACCCTCTCATTCCCC 59.390 63.158 0.00 0.00 0.00 4.81
9344 20547 0.543749 CACACCCTCTCATTCCCCTC 59.456 60.000 0.00 0.00 0.00 4.30
9345 20548 0.621862 ACACCCTCTCATTCCCCTCC 60.622 60.000 0.00 0.00 0.00 4.30
9346 20549 1.004891 ACCCTCTCATTCCCCTCCC 59.995 63.158 0.00 0.00 0.00 4.30
9348 20551 0.766288 CCCTCTCATTCCCCTCCCTC 60.766 65.000 0.00 0.00 0.00 4.30
9350 20553 0.397816 CTCTCATTCCCCTCCCTCGT 60.398 60.000 0.00 0.00 0.00 4.18
9351 20554 0.397254 TCTCATTCCCCTCCCTCGTC 60.397 60.000 0.00 0.00 0.00 4.20
9353 20556 3.155167 ATTCCCCTCCCTCGTCGC 61.155 66.667 0.00 0.00 0.00 5.19
9357 20560 4.824515 CCCTCCCTCGTCGCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
9358 20561 3.213402 CCTCCCTCGTCGCCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
9359 20562 3.213402 CTCCCTCGTCGCCTCTCC 61.213 72.222 0.00 0.00 0.00 3.71
9364 20567 3.815569 CTCGTCGCCTCTCCGCATC 62.816 68.421 0.00 0.00 0.00 3.91
9367 20570 3.889044 TCGCCTCTCCGCATCGTC 61.889 66.667 0.00 0.00 0.00 4.20
9396 20599 3.257561 CAGCCCATCGCGTTCTCG 61.258 66.667 5.77 0.00 44.76 4.04
9418 20621 4.643387 GGCAGCCCACCGTGTTCT 62.643 66.667 0.00 0.00 0.00 3.01
9420 20623 2.617274 GCAGCCCACCGTGTTCTTC 61.617 63.158 0.00 0.00 0.00 2.87
9421 20624 1.966451 CAGCCCACCGTGTTCTTCC 60.966 63.158 0.00 0.00 0.00 3.46
9422 20625 2.147387 AGCCCACCGTGTTCTTCCT 61.147 57.895 0.00 0.00 0.00 3.36
9423 20626 1.671379 GCCCACCGTGTTCTTCCTC 60.671 63.158 0.00 0.00 0.00 3.71
9425 20628 1.481056 CCCACCGTGTTCTTCCTCCT 61.481 60.000 0.00 0.00 0.00 3.69
9426 20629 0.320771 CCACCGTGTTCTTCCTCCTG 60.321 60.000 0.00 0.00 0.00 3.86
9429 20632 0.671781 CCGTGTTCTTCCTCCTGCAG 60.672 60.000 6.78 6.78 0.00 4.41
9430 20633 1.294659 CGTGTTCTTCCTCCTGCAGC 61.295 60.000 8.66 0.00 0.00 5.25
9432 20635 1.377856 GTTCTTCCTCCTGCAGCCC 60.378 63.158 8.66 0.00 0.00 5.19
9433 20636 1.847506 TTCTTCCTCCTGCAGCCCA 60.848 57.895 8.66 0.00 0.00 5.36
9434 20637 1.845627 TTCTTCCTCCTGCAGCCCAG 61.846 60.000 8.66 3.30 41.41 4.45
9454 20657 0.742635 CGCTTGCTTCCTCTCCTTCC 60.743 60.000 0.00 0.00 0.00 3.46
9455 20658 0.617935 GCTTGCTTCCTCTCCTTCCT 59.382 55.000 0.00 0.00 0.00 3.36
9456 20659 1.004161 GCTTGCTTCCTCTCCTTCCTT 59.996 52.381 0.00 0.00 0.00 3.36
9458 20661 3.342719 CTTGCTTCCTCTCCTTCCTTTC 58.657 50.000 0.00 0.00 0.00 2.62
9459 20662 1.630878 TGCTTCCTCTCCTTCCTTTCC 59.369 52.381 0.00 0.00 0.00 3.13
9460 20663 1.065053 GCTTCCTCTCCTTCCTTTCCC 60.065 57.143 0.00 0.00 0.00 3.97
9461 20664 2.269940 CTTCCTCTCCTTCCTTTCCCA 58.730 52.381 0.00 0.00 0.00 4.37
9462 20665 1.657804 TCCTCTCCTTCCTTTCCCAC 58.342 55.000 0.00 0.00 0.00 4.61
9463 20666 0.621082 CCTCTCCTTCCTTTCCCACC 59.379 60.000 0.00 0.00 0.00 4.61
9464 20667 0.250513 CTCTCCTTCCTTTCCCACCG 59.749 60.000 0.00 0.00 0.00 4.94
9466 20669 1.842381 CTCCTTCCTTTCCCACCGCT 61.842 60.000 0.00 0.00 0.00 5.52
9468 20671 1.244019 CCTTCCTTTCCCACCGCTTG 61.244 60.000 0.00 0.00 0.00 4.01
9469 20672 1.866853 CTTCCTTTCCCACCGCTTGC 61.867 60.000 0.00 0.00 0.00 4.01
9470 20673 2.282462 CCTTTCCCACCGCTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
9471 20674 1.903404 CCTTTCCCACCGCTTGCTT 60.903 57.895 0.00 0.00 0.00 3.91
9472 20675 1.581447 CTTTCCCACCGCTTGCTTC 59.419 57.895 0.00 0.00 0.00 3.86
9475 20678 2.747855 CCCACCGCTTGCTTCCTC 60.748 66.667 0.00 0.00 0.00 3.71
9476 20679 2.348998 CCACCGCTTGCTTCCTCT 59.651 61.111 0.00 0.00 0.00 3.69
9477 20680 1.743252 CCACCGCTTGCTTCCTCTC 60.743 63.158 0.00 0.00 0.00 3.20
9478 20681 1.743252 CACCGCTTGCTTCCTCTCC 60.743 63.158 0.00 0.00 0.00 3.71
9480 20683 1.298014 CCGCTTGCTTCCTCTCCTT 59.702 57.895 0.00 0.00 0.00 3.36
9481 20684 0.742635 CCGCTTGCTTCCTCTCCTTC 60.743 60.000 0.00 0.00 0.00 3.46
9482 20685 0.742635 CGCTTGCTTCCTCTCCTTCC 60.743 60.000 0.00 0.00 0.00 3.46
9485 20688 2.554124 GCTTGCTTCCTCTCCTTCCTTT 60.554 50.000 0.00 0.00 0.00 3.11
9486 20689 3.342719 CTTGCTTCCTCTCCTTCCTTTC 58.657 50.000 0.00 0.00 0.00 2.62
9487 20690 1.630878 TGCTTCCTCTCCTTCCTTTCC 59.369 52.381 0.00 0.00 0.00 3.13
9488 20691 1.065053 GCTTCCTCTCCTTCCTTTCCC 60.065 57.143 0.00 0.00 0.00 3.97
9490 20693 2.668850 TCCTCTCCTTCCTTTCCCAT 57.331 50.000 0.00 0.00 0.00 4.00
9491 20694 2.482494 TCCTCTCCTTCCTTTCCCATC 58.518 52.381 0.00 0.00 0.00 3.51
9492 20695 1.492599 CCTCTCCTTCCTTTCCCATCC 59.507 57.143 0.00 0.00 0.00 3.51
9493 20696 1.492599 CTCTCCTTCCTTTCCCATCCC 59.507 57.143 0.00 0.00 0.00 3.85
9494 20697 0.181350 CTCCTTCCTTTCCCATCCCG 59.819 60.000 0.00 0.00 0.00 5.14
9497 20700 0.181350 CTTCCTTTCCCATCCCGAGG 59.819 60.000 0.00 0.00 0.00 4.63
9499 20702 0.981277 TCCTTTCCCATCCCGAGGTC 60.981 60.000 0.00 0.00 0.00 3.85
9500 20703 1.271840 CCTTTCCCATCCCGAGGTCA 61.272 60.000 0.00 0.00 0.00 4.02
9502 20705 1.004277 CTTTCCCATCCCGAGGTCAAA 59.996 52.381 0.00 0.00 0.00 2.69
9503 20706 1.068948 TTCCCATCCCGAGGTCAAAA 58.931 50.000 0.00 0.00 0.00 2.44
9504 20707 0.618458 TCCCATCCCGAGGTCAAAAG 59.382 55.000 0.00 0.00 0.00 2.27
9505 20708 0.618458 CCCATCCCGAGGTCAAAAGA 59.382 55.000 0.00 0.00 0.00 2.52
9506 20709 1.407437 CCCATCCCGAGGTCAAAAGAG 60.407 57.143 0.00 0.00 0.00 2.85
9507 20710 1.279271 CCATCCCGAGGTCAAAAGAGT 59.721 52.381 0.00 0.00 0.00 3.24
9508 20711 2.350522 CATCCCGAGGTCAAAAGAGTG 58.649 52.381 0.00 0.00 0.00 3.51
9509 20712 0.685097 TCCCGAGGTCAAAAGAGTGG 59.315 55.000 0.00 0.00 0.00 4.00
9510 20713 0.396811 CCCGAGGTCAAAAGAGTGGT 59.603 55.000 0.00 0.00 0.00 4.16
9511 20714 1.202770 CCCGAGGTCAAAAGAGTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
9513 20716 2.949644 CCGAGGTCAAAAGAGTGGTTTT 59.050 45.455 0.00 0.00 0.00 2.43
9514 20717 3.380320 CCGAGGTCAAAAGAGTGGTTTTT 59.620 43.478 0.00 0.00 0.00 1.94
9530 20733 1.524848 TTTTTATGCGCCGGTGAAGA 58.475 45.000 21.76 1.11 0.00 2.87
9531 20734 1.083489 TTTTATGCGCCGGTGAAGAG 58.917 50.000 21.76 0.00 0.00 2.85
9532 20735 1.366111 TTTATGCGCCGGTGAAGAGC 61.366 55.000 21.76 8.15 0.00 4.09
9533 20736 2.238847 TTATGCGCCGGTGAAGAGCT 62.239 55.000 21.76 0.00 0.00 4.09
9534 20737 2.238847 TATGCGCCGGTGAAGAGCTT 62.239 55.000 21.76 8.25 0.00 3.74
9535 20738 3.491652 GCGCCGGTGAAGAGCTTC 61.492 66.667 21.76 3.32 39.91 3.86
9536 20739 2.262915 CGCCGGTGAAGAGCTTCT 59.737 61.111 10.20 0.00 40.14 2.85
9537 20740 2.097038 CGCCGGTGAAGAGCTTCTG 61.097 63.158 10.20 2.29 40.14 3.02
9538 20741 1.743252 GCCGGTGAAGAGCTTCTGG 60.743 63.158 1.90 10.71 40.14 3.86
9539 20742 1.078848 CCGGTGAAGAGCTTCTGGG 60.079 63.158 11.16 6.20 40.14 4.45
9540 20743 1.743252 CGGTGAAGAGCTTCTGGGC 60.743 63.158 11.16 0.60 40.14 5.36
9541 20744 1.743252 GGTGAAGAGCTTCTGGGCG 60.743 63.158 11.16 0.00 40.14 6.13
9542 20745 1.743252 GTGAAGAGCTTCTGGGCGG 60.743 63.158 11.16 0.00 40.14 6.13
9543 20746 2.821810 GAAGAGCTTCTGGGCGGC 60.822 66.667 0.00 0.00 36.69 6.53
9544 20747 4.767255 AAGAGCTTCTGGGCGGCG 62.767 66.667 0.51 0.51 37.29 6.46
9596 20799 4.516942 CGCGTACGCTAGATCTGG 57.483 61.111 34.69 15.18 39.32 3.86
9597 20800 1.082038 CGCGTACGCTAGATCTGGG 60.082 63.158 34.69 14.46 39.32 4.45
9598 20801 1.371881 GCGTACGCTAGATCTGGGC 60.372 63.158 31.95 8.86 38.26 5.36
9599 20802 1.797211 GCGTACGCTAGATCTGGGCT 61.797 60.000 31.95 3.26 38.26 5.19
9600 20803 1.520494 CGTACGCTAGATCTGGGCTA 58.480 55.000 5.18 2.40 0.00 3.93
9601 20804 1.197264 CGTACGCTAGATCTGGGCTAC 59.803 57.143 5.18 11.79 0.00 3.58
9602 20805 1.197264 GTACGCTAGATCTGGGCTACG 59.803 57.143 5.18 3.87 0.00 3.51
9603 20806 1.173444 ACGCTAGATCTGGGCTACGG 61.173 60.000 5.18 0.26 0.00 4.02
9604 20807 0.889638 CGCTAGATCTGGGCTACGGA 60.890 60.000 5.18 0.00 39.23 4.69
9605 20808 0.885196 GCTAGATCTGGGCTACGGAG 59.115 60.000 5.18 0.00 38.03 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
455 465 4.803426 GTCTCAGAGCGCCCACGG 62.803 72.222 2.29 0.00 40.57 4.94
458 468 3.385384 CCAGTCTCAGAGCGCCCA 61.385 66.667 2.29 0.00 0.00 5.36
460 470 4.074526 TGCCAGTCTCAGAGCGCC 62.075 66.667 2.29 0.00 0.00 6.53
462 474 2.183811 CCTGCCAGTCTCAGAGCG 59.816 66.667 0.00 0.00 33.54 5.03
601 627 1.594293 CGCGGCCCTACGATGAATT 60.594 57.895 0.00 0.00 35.47 2.17
635 661 7.092716 GCTCTGGCTTGAGAAAAATAAAATCA 58.907 34.615 11.21 0.00 36.23 2.57
653 679 1.770294 AGAGTAGGTACAGCTCTGGC 58.230 55.000 10.85 0.00 39.45 4.85
654 680 3.626930 AGAAGAGTAGGTACAGCTCTGG 58.373 50.000 11.94 0.00 40.43 3.86
655 681 4.947388 AGAAGAAGAGTAGGTACAGCTCTG 59.053 45.833 11.94 0.00 40.43 3.35
656 682 5.187621 AGAAGAAGAGTAGGTACAGCTCT 57.812 43.478 7.11 7.11 41.82 4.09
657 683 5.650703 AGAAGAAGAAGAGTAGGTACAGCTC 59.349 44.000 0.00 0.00 0.00 4.09
658 684 5.576128 AGAAGAAGAAGAGTAGGTACAGCT 58.424 41.667 0.00 0.00 0.00 4.24
659 685 5.907866 AGAAGAAGAAGAGTAGGTACAGC 57.092 43.478 0.00 0.00 0.00 4.40
662 688 8.344446 AGAAGAAGAAGAAGAAGAGTAGGTAC 57.656 38.462 0.00 0.00 0.00 3.34
663 689 8.943594 AAGAAGAAGAAGAAGAAGAGTAGGTA 57.056 34.615 0.00 0.00 0.00 3.08
664 690 7.728532 AGAAGAAGAAGAAGAAGAAGAGTAGGT 59.271 37.037 0.00 0.00 0.00 3.08
668 735 8.250143 AGAAGAAGAAGAAGAAGAAGAAGAGT 57.750 34.615 0.00 0.00 0.00 3.24
783 869 2.870175 TCCACGGAAAACAATCCATGT 58.130 42.857 0.00 0.00 46.82 3.21
808 895 2.601979 CGCTAGCGAGATCAGAGAGTTG 60.602 54.545 32.98 0.00 42.83 3.16
844 942 4.188247 TGAAGATACGGACAAGGAACAG 57.812 45.455 0.00 0.00 0.00 3.16
863 961 5.826643 AGGGGCAGATACTGTTTTTAATGA 58.173 37.500 0.00 0.00 33.43 2.57
917 1015 4.043200 GCCCTGCAGCGACCAAAC 62.043 66.667 8.66 0.00 0.00 2.93
935 1033 1.802960 AGATCAGCTCTGTTGTTTGCG 59.197 47.619 0.00 0.00 31.12 4.85
963 1061 3.119291 CACTGATGTATCGCACTTCCTC 58.881 50.000 0.00 0.00 31.75 3.71
995 1101 1.195115 TGTGAGGTAGCCCATCTGTC 58.805 55.000 0.00 0.00 0.00 3.51
1005 1111 4.504858 AGGCGAAATTACTTGTGAGGTAG 58.495 43.478 0.00 0.00 0.00 3.18
1007 1113 3.335579 GAGGCGAAATTACTTGTGAGGT 58.664 45.455 0.00 0.00 0.00 3.85
1015 1121 1.340697 GGTTGGGGAGGCGAAATTACT 60.341 52.381 0.00 0.00 0.00 2.24
1020 1126 2.754375 GAGGTTGGGGAGGCGAAA 59.246 61.111 0.00 0.00 0.00 3.46
1059 1165 2.048444 ATTCAGCTATGTGCACCCTG 57.952 50.000 15.69 14.74 45.94 4.45
1060 1166 3.931907 TTATTCAGCTATGTGCACCCT 57.068 42.857 15.69 4.16 45.94 4.34
1061 1167 4.261741 CCAATTATTCAGCTATGTGCACCC 60.262 45.833 15.69 0.00 45.94 4.61
1111 1220 0.467290 TTCTGGCAACCCTCCAACAC 60.467 55.000 0.00 0.00 32.41 3.32
1115 1225 1.059584 TCAGTTCTGGCAACCCTCCA 61.060 55.000 0.00 0.00 0.00 3.86
1118 1229 2.519013 GATTTCAGTTCTGGCAACCCT 58.481 47.619 0.00 0.00 0.00 4.34
1128 1239 4.392921 TGAGATCTCCGGATTTCAGTTC 57.607 45.455 20.03 0.00 37.90 3.01
1150 1261 7.936847 CAGTACTAATAGAGTGAGGTGAGATCT 59.063 40.741 0.00 0.00 39.39 2.75
1151 1262 7.717875 ACAGTACTAATAGAGTGAGGTGAGATC 59.282 40.741 0.00 0.00 39.39 2.75
1152 1263 7.579105 ACAGTACTAATAGAGTGAGGTGAGAT 58.421 38.462 0.00 0.00 39.39 2.75
1153 1264 6.959904 ACAGTACTAATAGAGTGAGGTGAGA 58.040 40.000 0.00 0.00 39.39 3.27
1154 1265 7.988599 ACTACAGTACTAATAGAGTGAGGTGAG 59.011 40.741 16.56 0.00 39.39 3.51
1155 1266 7.859540 ACTACAGTACTAATAGAGTGAGGTGA 58.140 38.462 16.56 0.00 39.39 4.02
1156 1267 9.044150 GTACTACAGTACTAATAGAGTGAGGTG 57.956 40.741 16.56 0.00 45.47 4.00
1186 1297 6.198687 CGCCGAATCTGCAAAATTATTTAGA 58.801 36.000 0.00 0.00 0.00 2.10
1211 1322 6.022163 AGATGAGATTTCAGTTTTGGCAAG 57.978 37.500 0.00 0.00 36.61 4.01
1243 1354 7.456725 ACCTGAAGTACAGTTACAGAGTAGTA 58.543 38.462 0.00 0.00 44.40 1.82
1244 1355 6.305411 ACCTGAAGTACAGTTACAGAGTAGT 58.695 40.000 0.00 0.00 44.40 2.73
1245 1356 6.821031 ACCTGAAGTACAGTTACAGAGTAG 57.179 41.667 0.00 0.00 44.40 2.57
1495 1627 0.530650 ACTGAACACCACAGCAGACG 60.531 55.000 0.00 0.00 38.74 4.18
1821 1963 6.566564 CGAATGCCGTAAATAAGCATGAGAAT 60.567 38.462 0.00 0.00 46.17 2.40
1875 2017 5.105756 GCTTGTATAAACCATTGCCACTTCT 60.106 40.000 0.00 0.00 0.00 2.85
1998 2146 4.643463 CCCATCTTCATCAGAGGATTCAG 58.357 47.826 0.00 0.00 38.40 3.02
2177 2325 0.613260 AGACCAAGATGGCACGCTTA 59.387 50.000 4.36 0.00 42.67 3.09
2216 2364 6.174049 GCCAGTAGATAAGGTGAGAACTTTT 58.826 40.000 0.00 0.00 0.00 2.27
2360 2508 0.727398 GAGTGCGGAAATACCACTGC 59.273 55.000 0.00 0.00 39.72 4.40
2582 2730 2.412089 GCCGACCGCATTGTATAGAATC 59.588 50.000 0.00 0.00 37.47 2.52
2840 2988 2.170607 GTTGTATGCCCTCCTAAGCTGA 59.829 50.000 0.00 0.00 0.00 4.26
3212 3360 3.070015 CACAAATGGCAACCTTTTCTCCT 59.930 43.478 0.00 0.00 31.55 3.69
3498 3659 9.764363 ACACAGATGTATCACGATTAATTGTAT 57.236 29.630 8.05 5.76 37.26 2.29
3605 3768 5.063564 CACTCTTATAAAACTCGGAGTTGGC 59.936 44.000 23.05 0.00 38.66 4.52
3617 3780 7.564793 TGGCAGCTATCTTCACTCTTATAAAA 58.435 34.615 0.00 0.00 0.00 1.52
3753 3919 1.335689 ACGACCGTGCAGAGTAAACTC 60.336 52.381 1.72 1.72 43.17 3.01
3772 3938 0.881796 GGAAGGTTGCCTTGTAGCAC 59.118 55.000 5.01 0.00 44.82 4.40
3784 3950 1.072965 CTCACAGAGCCAAGGAAGGTT 59.927 52.381 0.00 0.00 0.00 3.50
3817 3983 4.756084 GGACTTCTTCCATGTGAACTTG 57.244 45.455 0.00 0.00 45.10 3.16
3841 4007 3.860930 TTTCACCTTCCTGGGCGCC 62.861 63.158 21.18 21.18 41.11 6.53
3897 4063 1.398958 GGGGAAAAGGTGCTGCACAA 61.399 55.000 31.35 0.00 35.86 3.33
3900 4066 2.203625 GGGGGAAAAGGTGCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
3915 4081 0.976641 GCAAGGAAAGGAAAAGGGGG 59.023 55.000 0.00 0.00 0.00 5.40
4194 4571 1.889105 CCTGTCCATTGGCGATCCG 60.889 63.158 0.00 0.00 34.14 4.18
4203 4580 5.715439 TGTGATATCTTTCCCTGTCCATT 57.285 39.130 3.98 0.00 0.00 3.16
4404 4781 0.747644 TTGTGGCTGTATGGGCATCG 60.748 55.000 0.00 0.00 43.39 3.84
4966 5433 3.058914 GCATATAAGGCTTAACACCTGCG 60.059 47.826 11.59 0.00 37.67 5.18
5198 5665 3.432749 CGTGATGTCTGGATCCCAAGAAT 60.433 47.826 9.90 3.35 30.80 2.40
5287 5754 1.202545 CGGCTAAGAACCCTTCCTAGC 60.203 57.143 4.61 4.61 44.95 3.42
5636 6481 9.132521 CAGAGAACATAAATTGGTGAATGAAAC 57.867 33.333 0.00 0.00 0.00 2.78
5652 6558 4.580167 ACAAAAACAGCAGCAGAGAACATA 59.420 37.500 0.00 0.00 0.00 2.29
5687 6612 0.109597 GAATGCAAACTGTGGGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
5693 6618 5.342433 TGAGAACTTTGAATGCAAACTGTG 58.658 37.500 0.00 0.00 38.99 3.66
6050 6980 8.764287 TGAAGCAACATGACGTTCATATAATAG 58.236 33.333 0.00 0.00 34.28 1.73
6051 6981 8.655651 TGAAGCAACATGACGTTCATATAATA 57.344 30.769 0.00 0.00 34.28 0.98
6143 7073 5.113383 ACATGGCAATGCATCTAACATTTG 58.887 37.500 7.79 0.00 35.58 2.32
6546 8551 7.391148 AACACCATATTCACCATACAAAGTC 57.609 36.000 0.00 0.00 0.00 3.01
6566 8571 9.334693 CTTACAAAGCAGATCAAAGATAAACAC 57.665 33.333 0.00 0.00 0.00 3.32
6578 8583 3.942115 GGAACCCTCTTACAAAGCAGATC 59.058 47.826 0.00 0.00 0.00 2.75
6601 8606 2.666508 CGAACCGATACAAAGTGGTGAG 59.333 50.000 0.00 0.00 34.26 3.51
6616 8621 1.073177 AAAGCAATACGACCGAACCG 58.927 50.000 0.00 0.00 0.00 4.44
6661 8666 9.887629 TGTTATGGTGTTTTTATATTACCGAGA 57.112 29.630 0.00 0.00 34.16 4.04
7293 9430 8.998814 TCCACAGAGTCTATAATTATTTTCCCA 58.001 33.333 2.68 0.00 0.00 4.37
7830 13006 2.819608 TCTGTTTGCCCAAGTTATGAGC 59.180 45.455 0.00 0.00 32.49 4.26
7833 13009 5.010012 AGAGTTTCTGTTTGCCCAAGTTATG 59.990 40.000 0.00 0.00 0.00 1.90
7893 13078 7.728847 TGACATATTTAGTGGCACATGTATC 57.271 36.000 21.41 9.52 44.52 2.24
7948 13135 0.617820 ACCGCACCCTCCTCTATTGT 60.618 55.000 0.00 0.00 0.00 2.71
7988 13182 6.540438 TCGTGGTTGGAGATAAGTCTATTT 57.460 37.500 0.00 0.00 33.97 1.40
8498 13793 3.803340 ACTCCACTATTCTCCCTGGAAA 58.197 45.455 0.00 0.00 32.30 3.13
8510 13810 7.490657 TTGTAGGTTTGTCATACTCCACTAT 57.509 36.000 0.00 0.00 34.82 2.12
8639 13939 6.633856 AGCAATCAAAACTGACAGTCTTTTT 58.366 32.000 8.93 3.22 0.00 1.94
8640 13940 6.212888 AGCAATCAAAACTGACAGTCTTTT 57.787 33.333 8.93 3.97 0.00 2.27
8641 13941 5.841957 AGCAATCAAAACTGACAGTCTTT 57.158 34.783 8.93 8.89 0.00 2.52
8642 13942 5.841957 AAGCAATCAAAACTGACAGTCTT 57.158 34.783 8.93 0.00 0.00 3.01
8643 13943 6.058183 AGTAAGCAATCAAAACTGACAGTCT 58.942 36.000 8.93 0.00 0.00 3.24
8652 13952 4.050553 TGCAGCAAGTAAGCAATCAAAAC 58.949 39.130 0.00 0.00 34.97 2.43
8695 13995 6.253512 GGCACTATTTTCTAAAAGCCGATTTG 59.746 38.462 0.00 0.00 29.63 2.32
8701 14001 4.155280 TCGTGGCACTATTTTCTAAAAGCC 59.845 41.667 16.72 8.48 36.56 4.35
8902 14227 5.530243 AGTACCTCTGGTTTAGCCTTCTAT 58.470 41.667 0.00 0.00 37.09 1.98
8944 14278 2.320745 TGCTCACATCGCATCTCATT 57.679 45.000 0.00 0.00 31.40 2.57
8948 14282 3.064931 CACATATGCTCACATCGCATCT 58.935 45.455 1.58 0.00 44.24 2.90
8993 14328 4.024959 GCATTAGCCAATCGACAAACGAC 61.025 47.826 0.00 0.00 44.04 4.34
8994 14329 2.095213 GCATTAGCCAATCGACAAACGA 59.905 45.455 0.00 0.00 44.80 3.85
8995 14330 2.159585 TGCATTAGCCAATCGACAAACG 60.160 45.455 0.00 0.00 41.13 3.60
8996 14331 3.485947 TGCATTAGCCAATCGACAAAC 57.514 42.857 0.00 0.00 41.13 2.93
8997 14332 4.157472 TGAATGCATTAGCCAATCGACAAA 59.843 37.500 12.97 0.00 41.13 2.83
8998 14333 3.693578 TGAATGCATTAGCCAATCGACAA 59.306 39.130 12.97 0.00 41.13 3.18
8999 14334 3.065233 GTGAATGCATTAGCCAATCGACA 59.935 43.478 12.97 0.00 41.13 4.35
9000 14335 3.313526 AGTGAATGCATTAGCCAATCGAC 59.686 43.478 12.97 0.00 41.13 4.20
9001 14336 3.544684 AGTGAATGCATTAGCCAATCGA 58.455 40.909 12.97 0.00 41.13 3.59
9002 14337 3.976793 AGTGAATGCATTAGCCAATCG 57.023 42.857 12.97 0.00 41.13 3.34
9003 14338 4.098349 TGGAAGTGAATGCATTAGCCAATC 59.902 41.667 12.97 8.19 41.13 2.67
9004 14339 4.025360 TGGAAGTGAATGCATTAGCCAAT 58.975 39.130 12.97 2.64 41.13 3.16
9005 14340 3.193267 GTGGAAGTGAATGCATTAGCCAA 59.807 43.478 12.97 0.00 41.13 4.52
9006 14341 2.754552 GTGGAAGTGAATGCATTAGCCA 59.245 45.455 12.97 12.19 41.13 4.75
9007 14342 2.754552 TGTGGAAGTGAATGCATTAGCC 59.245 45.455 12.97 9.81 41.13 3.93
9008 14343 4.096833 TGATGTGGAAGTGAATGCATTAGC 59.903 41.667 12.97 8.22 42.57 3.09
9009 14344 5.823209 TGATGTGGAAGTGAATGCATTAG 57.177 39.130 12.97 0.00 0.00 1.73
9010 14345 6.778834 AATGATGTGGAAGTGAATGCATTA 57.221 33.333 12.97 0.00 0.00 1.90
9011 14346 5.670792 AATGATGTGGAAGTGAATGCATT 57.329 34.783 12.83 12.83 0.00 3.56
9012 14347 5.670792 AAATGATGTGGAAGTGAATGCAT 57.329 34.783 0.00 0.00 0.00 3.96
9013 14348 5.476254 TGTAAATGATGTGGAAGTGAATGCA 59.524 36.000 0.00 0.00 0.00 3.96
9094 14450 5.743398 ACCAATCGCATCAATTTACATTTCG 59.257 36.000 0.00 0.00 0.00 3.46
9106 14462 2.884012 ACAACAGAAACCAATCGCATCA 59.116 40.909 0.00 0.00 0.00 3.07
9178 19927 5.593909 CAGAGGGTACATTGCAATATGGAAA 59.406 40.000 12.53 0.00 29.75 3.13
9179 19928 5.132502 CAGAGGGTACATTGCAATATGGAA 58.867 41.667 12.53 0.00 30.73 3.53
9194 19943 9.146586 ACGTTATATATTTTGGTACAGAGGGTA 57.853 33.333 0.00 0.00 42.39 3.69
9195 19944 8.026396 ACGTTATATATTTTGGTACAGAGGGT 57.974 34.615 0.00 0.00 42.39 4.34
9213 20416 9.949174 TTACACTATGATCGCTAAAACGTTATA 57.051 29.630 0.00 0.00 0.00 0.98
9214 20417 8.861033 TTACACTATGATCGCTAAAACGTTAT 57.139 30.769 0.00 0.00 0.00 1.89
9216 20419 7.585286 TTTACACTATGATCGCTAAAACGTT 57.415 32.000 0.00 0.00 0.00 3.99
9217 20420 7.705325 AGATTTACACTATGATCGCTAAAACGT 59.295 33.333 0.00 0.00 0.00 3.99
9220 20423 7.042051 GCCAGATTTACACTATGATCGCTAAAA 60.042 37.037 0.00 0.00 0.00 1.52
9222 20425 5.926542 GCCAGATTTACACTATGATCGCTAA 59.073 40.000 0.00 0.00 0.00 3.09
9223 20426 5.243954 AGCCAGATTTACACTATGATCGCTA 59.756 40.000 0.00 0.00 0.00 4.26
9224 20427 4.039730 AGCCAGATTTACACTATGATCGCT 59.960 41.667 0.00 0.00 0.00 4.93
9225 20428 4.310769 AGCCAGATTTACACTATGATCGC 58.689 43.478 0.00 0.00 0.00 4.58
9226 20429 5.569441 CGTAGCCAGATTTACACTATGATCG 59.431 44.000 0.00 0.00 0.00 3.69
9227 20430 6.448006 ACGTAGCCAGATTTACACTATGATC 58.552 40.000 0.00 0.00 0.00 2.92
9228 20431 6.406692 ACGTAGCCAGATTTACACTATGAT 57.593 37.500 0.00 0.00 0.00 2.45
9230 20433 6.141844 CGTAACGTAGCCAGATTTACACTATG 59.858 42.308 0.00 0.00 0.00 2.23
9231 20434 6.038603 TCGTAACGTAGCCAGATTTACACTAT 59.961 38.462 0.00 0.00 0.00 2.12
9232 20435 5.353956 TCGTAACGTAGCCAGATTTACACTA 59.646 40.000 0.00 0.00 0.00 2.74
9234 20437 4.414852 TCGTAACGTAGCCAGATTTACAC 58.585 43.478 0.00 0.00 0.00 2.90
9235 20438 4.700268 TCGTAACGTAGCCAGATTTACA 57.300 40.909 0.00 0.00 0.00 2.41
9236 20439 5.574443 AGTTTCGTAACGTAGCCAGATTTAC 59.426 40.000 0.00 0.00 39.31 2.01
9239 20442 4.184079 AGTTTCGTAACGTAGCCAGATT 57.816 40.909 0.00 0.00 39.31 2.40
9240 20443 3.863142 AGTTTCGTAACGTAGCCAGAT 57.137 42.857 0.00 0.00 39.31 2.90
9241 20444 3.568538 GAAGTTTCGTAACGTAGCCAGA 58.431 45.455 0.00 0.00 39.31 3.86
9243 20446 2.610232 GGGAAGTTTCGTAACGTAGCCA 60.610 50.000 0.00 0.00 39.31 4.75
9244 20447 1.995484 GGGAAGTTTCGTAACGTAGCC 59.005 52.381 0.00 0.62 39.31 3.93
9245 20448 1.650645 CGGGAAGTTTCGTAACGTAGC 59.349 52.381 0.00 0.00 39.31 3.58
9246 20449 3.166657 CTCGGGAAGTTTCGTAACGTAG 58.833 50.000 0.00 0.00 39.31 3.51
9248 20451 1.338020 ACTCGGGAAGTTTCGTAACGT 59.662 47.619 0.00 0.00 39.31 3.99
9249 20452 2.056094 ACTCGGGAAGTTTCGTAACG 57.944 50.000 0.00 0.00 39.31 3.18
9258 20461 2.625695 TTTTCGGAAACTCGGGAAGT 57.374 45.000 1.96 0.00 41.10 3.01
9259 20462 2.414161 GCATTTTCGGAAACTCGGGAAG 60.414 50.000 1.96 0.00 0.00 3.46
9260 20463 1.538075 GCATTTTCGGAAACTCGGGAA 59.462 47.619 1.96 0.00 0.00 3.97
9262 20465 0.170339 GGCATTTTCGGAAACTCGGG 59.830 55.000 1.96 0.00 0.00 5.14
9263 20466 0.170339 GGGCATTTTCGGAAACTCGG 59.830 55.000 1.96 0.00 0.00 4.63
9265 20468 1.472878 GGAGGGCATTTTCGGAAACTC 59.527 52.381 1.96 6.14 0.00 3.01
9266 20469 1.545841 GGAGGGCATTTTCGGAAACT 58.454 50.000 1.96 0.00 0.00 2.66
9267 20470 0.530744 GGGAGGGCATTTTCGGAAAC 59.469 55.000 1.96 0.00 0.00 2.78
9269 20472 0.610785 GTGGGAGGGCATTTTCGGAA 60.611 55.000 0.00 0.00 0.00 4.30
9271 20474 2.052104 GGTGGGAGGGCATTTTCGG 61.052 63.158 0.00 0.00 0.00 4.30
9272 20475 1.000896 AGGTGGGAGGGCATTTTCG 60.001 57.895 0.00 0.00 0.00 3.46
9273 20476 1.607801 GCAGGTGGGAGGGCATTTTC 61.608 60.000 0.00 0.00 0.00 2.29
9274 20477 1.610379 GCAGGTGGGAGGGCATTTT 60.610 57.895 0.00 0.00 0.00 1.82
9275 20478 2.037847 GCAGGTGGGAGGGCATTT 59.962 61.111 0.00 0.00 0.00 2.32
9276 20479 4.066139 GGCAGGTGGGAGGGCATT 62.066 66.667 0.00 0.00 0.00 3.56
9281 20484 3.721706 GAGTGGGCAGGTGGGAGG 61.722 72.222 0.00 0.00 0.00 4.30
9282 20485 3.721706 GGAGTGGGCAGGTGGGAG 61.722 72.222 0.00 0.00 0.00 4.30
9285 20488 3.341629 ATGGGAGTGGGCAGGTGG 61.342 66.667 0.00 0.00 0.00 4.61
9286 20489 2.273449 GATGGGAGTGGGCAGGTG 59.727 66.667 0.00 0.00 0.00 4.00
9287 20490 3.017581 GGATGGGAGTGGGCAGGT 61.018 66.667 0.00 0.00 0.00 4.00
9288 20491 3.016971 TGGATGGGAGTGGGCAGG 61.017 66.667 0.00 0.00 0.00 4.85
9289 20492 1.856539 AAGTGGATGGGAGTGGGCAG 61.857 60.000 0.00 0.00 0.00 4.85
9291 20494 1.379044 CAAGTGGATGGGAGTGGGC 60.379 63.158 0.00 0.00 0.00 5.36
9292 20495 1.379044 GCAAGTGGATGGGAGTGGG 60.379 63.158 0.00 0.00 0.00 4.61
9293 20496 0.679002 CAGCAAGTGGATGGGAGTGG 60.679 60.000 0.00 0.00 0.00 4.00
9296 20499 1.751927 GGCAGCAAGTGGATGGGAG 60.752 63.158 0.00 0.00 32.19 4.30
9297 20500 2.356278 GGCAGCAAGTGGATGGGA 59.644 61.111 0.00 0.00 32.19 4.37
9298 20501 2.757099 GGGCAGCAAGTGGATGGG 60.757 66.667 0.00 0.00 32.19 4.00
9299 20502 2.036098 TGGGCAGCAAGTGGATGG 59.964 61.111 0.00 0.00 32.19 3.51
9300 20503 1.303888 AGTGGGCAGCAAGTGGATG 60.304 57.895 0.00 0.00 35.52 3.51
9303 20506 1.673665 GAGAGTGGGCAGCAAGTGG 60.674 63.158 0.00 0.00 0.00 4.00
9304 20507 1.071987 TGAGAGTGGGCAGCAAGTG 59.928 57.895 0.00 0.00 0.00 3.16
9306 20509 1.673665 GGTGAGAGTGGGCAGCAAG 60.674 63.158 0.00 0.00 33.05 4.01
9309 20512 3.640407 TGGGTGAGAGTGGGCAGC 61.640 66.667 0.00 0.00 0.00 5.25
9311 20514 2.447572 TGTGGGTGAGAGTGGGCA 60.448 61.111 0.00 0.00 0.00 5.36
9312 20515 2.032681 GTGTGGGTGAGAGTGGGC 59.967 66.667 0.00 0.00 0.00 5.36
9315 20518 0.833834 AGAGGGTGTGGGTGAGAGTG 60.834 60.000 0.00 0.00 0.00 3.51
9317 20520 0.542938 TGAGAGGGTGTGGGTGAGAG 60.543 60.000 0.00 0.00 0.00 3.20
9319 20522 0.987294 AATGAGAGGGTGTGGGTGAG 59.013 55.000 0.00 0.00 0.00 3.51
9321 20524 0.035056 GGAATGAGAGGGTGTGGGTG 60.035 60.000 0.00 0.00 0.00 4.61
9322 20525 1.208165 GGGAATGAGAGGGTGTGGGT 61.208 60.000 0.00 0.00 0.00 4.51
9323 20526 1.609783 GGGAATGAGAGGGTGTGGG 59.390 63.158 0.00 0.00 0.00 4.61
9325 20528 0.543749 GAGGGGAATGAGAGGGTGTG 59.456 60.000 0.00 0.00 0.00 3.82
9327 20530 1.348775 GGGAGGGGAATGAGAGGGTG 61.349 65.000 0.00 0.00 0.00 4.61
9329 20532 0.766288 GAGGGAGGGGAATGAGAGGG 60.766 65.000 0.00 0.00 0.00 4.30
9331 20534 0.397816 ACGAGGGAGGGGAATGAGAG 60.398 60.000 0.00 0.00 0.00 3.20
9332 20535 0.397254 GACGAGGGAGGGGAATGAGA 60.397 60.000 0.00 0.00 0.00 3.27
9335 20538 2.815308 CGACGAGGGAGGGGAATG 59.185 66.667 0.00 0.00 0.00 2.67
9336 20539 3.155167 GCGACGAGGGAGGGGAAT 61.155 66.667 0.00 0.00 0.00 3.01
9340 20543 4.824515 AGAGGCGACGAGGGAGGG 62.825 72.222 0.00 0.00 0.00 4.30
9341 20544 3.213402 GAGAGGCGACGAGGGAGG 61.213 72.222 0.00 0.00 0.00 4.30
9342 20545 3.213402 GGAGAGGCGACGAGGGAG 61.213 72.222 0.00 0.00 0.00 4.30
9346 20549 3.815569 GATGCGGAGAGGCGACGAG 62.816 68.421 0.00 0.00 35.06 4.18
9350 20553 3.889044 GACGATGCGGAGAGGCGA 61.889 66.667 0.00 0.00 35.06 5.54
9353 20556 4.933064 GGCGACGATGCGGAGAGG 62.933 72.222 0.00 0.00 35.06 3.69
9378 20581 3.567797 GAGAACGCGATGGGCTGC 61.568 66.667 15.93 0.00 40.44 5.25
9379 20582 3.257561 CGAGAACGCGATGGGCTG 61.258 66.667 15.93 0.00 40.44 4.85
9405 20608 1.671379 GAGGAAGAACACGGTGGGC 60.671 63.158 13.48 3.77 0.00 5.36
9406 20609 1.003718 GGAGGAAGAACACGGTGGG 60.004 63.158 13.48 0.00 0.00 4.61
9407 20610 0.320771 CAGGAGGAAGAACACGGTGG 60.321 60.000 13.48 0.00 0.00 4.61
9408 20611 0.951040 GCAGGAGGAAGAACACGGTG 60.951 60.000 6.58 6.58 0.00 4.94
9410 20613 0.671781 CTGCAGGAGGAAGAACACGG 60.672 60.000 5.57 0.00 0.00 4.94
9411 20614 1.294659 GCTGCAGGAGGAAGAACACG 61.295 60.000 17.12 0.00 0.00 4.49
9415 20618 1.845627 CTGGGCTGCAGGAGGAAGAA 61.846 60.000 17.12 0.00 0.00 2.52
9416 20619 2.203983 TGGGCTGCAGGAGGAAGA 60.204 61.111 17.12 0.00 0.00 2.87
9417 20620 2.271497 CTGGGCTGCAGGAGGAAG 59.729 66.667 17.12 0.00 0.00 3.46
9418 20621 4.039092 GCTGGGCTGCAGGAGGAA 62.039 66.667 17.12 0.00 0.00 3.36
9434 20637 1.365368 GAAGGAGAGGAAGCAAGCGC 61.365 60.000 0.00 0.00 38.99 5.92
9436 20639 0.617935 AGGAAGGAGAGGAAGCAAGC 59.382 55.000 0.00 0.00 0.00 4.01
9438 20641 2.040412 GGAAAGGAAGGAGAGGAAGCAA 59.960 50.000 0.00 0.00 0.00 3.91
9439 20642 1.630878 GGAAAGGAAGGAGAGGAAGCA 59.369 52.381 0.00 0.00 0.00 3.91
9443 20646 1.657804 GTGGGAAAGGAAGGAGAGGA 58.342 55.000 0.00 0.00 0.00 3.71
9446 20649 1.838073 GCGGTGGGAAAGGAAGGAGA 61.838 60.000 0.00 0.00 0.00 3.71
9449 20652 1.074951 AAGCGGTGGGAAAGGAAGG 59.925 57.895 0.00 0.00 0.00 3.46
9450 20653 1.866853 GCAAGCGGTGGGAAAGGAAG 61.867 60.000 0.00 0.00 0.00 3.46
9454 20657 1.581447 GAAGCAAGCGGTGGGAAAG 59.419 57.895 0.00 0.00 0.00 2.62
9455 20658 1.901464 GGAAGCAAGCGGTGGGAAA 60.901 57.895 0.00 0.00 0.00 3.13
9456 20659 2.282180 GGAAGCAAGCGGTGGGAA 60.282 61.111 0.00 0.00 0.00 3.97
9458 20661 2.747855 GAGGAAGCAAGCGGTGGG 60.748 66.667 0.00 0.00 0.00 4.61
9459 20662 1.743252 GAGAGGAAGCAAGCGGTGG 60.743 63.158 0.00 0.00 0.00 4.61
9460 20663 1.743252 GGAGAGGAAGCAAGCGGTG 60.743 63.158 0.00 0.00 0.00 4.94
9461 20664 1.484444 AAGGAGAGGAAGCAAGCGGT 61.484 55.000 0.00 0.00 0.00 5.68
9462 20665 0.742635 GAAGGAGAGGAAGCAAGCGG 60.743 60.000 0.00 0.00 0.00 5.52
9463 20666 0.742635 GGAAGGAGAGGAAGCAAGCG 60.743 60.000 0.00 0.00 0.00 4.68
9464 20667 0.617935 AGGAAGGAGAGGAAGCAAGC 59.382 55.000 0.00 0.00 0.00 4.01
9466 20669 2.040412 GGAAAGGAAGGAGAGGAAGCAA 59.960 50.000 0.00 0.00 0.00 3.91
9468 20671 1.065053 GGGAAAGGAAGGAGAGGAAGC 60.065 57.143 0.00 0.00 0.00 3.86
9469 20672 2.269940 TGGGAAAGGAAGGAGAGGAAG 58.730 52.381 0.00 0.00 0.00 3.46
9470 20673 2.433444 TGGGAAAGGAAGGAGAGGAA 57.567 50.000 0.00 0.00 0.00 3.36
9471 20674 2.482494 GATGGGAAAGGAAGGAGAGGA 58.518 52.381 0.00 0.00 0.00 3.71
9472 20675 1.492599 GGATGGGAAAGGAAGGAGAGG 59.507 57.143 0.00 0.00 0.00 3.69
9475 20678 0.181350 CGGGATGGGAAAGGAAGGAG 59.819 60.000 0.00 0.00 0.00 3.69
9476 20679 0.252974 TCGGGATGGGAAAGGAAGGA 60.253 55.000 0.00 0.00 0.00 3.36
9477 20680 0.181350 CTCGGGATGGGAAAGGAAGG 59.819 60.000 0.00 0.00 0.00 3.46
9478 20681 0.181350 CCTCGGGATGGGAAAGGAAG 59.819 60.000 0.00 0.00 0.00 3.46
9480 20683 0.981277 GACCTCGGGATGGGAAAGGA 60.981 60.000 0.00 0.00 0.00 3.36
9481 20684 1.271840 TGACCTCGGGATGGGAAAGG 61.272 60.000 0.00 0.00 0.00 3.11
9482 20685 0.618458 TTGACCTCGGGATGGGAAAG 59.382 55.000 0.00 0.00 0.00 2.62
9485 20688 0.618458 CTTTTGACCTCGGGATGGGA 59.382 55.000 0.00 0.00 0.00 4.37
9486 20689 0.618458 TCTTTTGACCTCGGGATGGG 59.382 55.000 0.00 0.00 0.00 4.00
9487 20690 1.279271 ACTCTTTTGACCTCGGGATGG 59.721 52.381 0.00 0.00 0.00 3.51
9488 20691 2.350522 CACTCTTTTGACCTCGGGATG 58.649 52.381 0.00 0.00 0.00 3.51
9490 20693 0.685097 CCACTCTTTTGACCTCGGGA 59.315 55.000 0.00 0.00 0.00 5.14
9491 20694 0.396811 ACCACTCTTTTGACCTCGGG 59.603 55.000 0.00 0.00 0.00 5.14
9492 20695 2.256117 AACCACTCTTTTGACCTCGG 57.744 50.000 0.00 0.00 0.00 4.63
9493 20696 4.632538 AAAAACCACTCTTTTGACCTCG 57.367 40.909 0.00 0.00 0.00 4.63
9511 20714 1.466950 CTCTTCACCGGCGCATAAAAA 59.533 47.619 10.83 0.00 0.00 1.94
9513 20716 1.366111 GCTCTTCACCGGCGCATAAA 61.366 55.000 10.83 0.00 0.00 1.40
9514 20717 1.813753 GCTCTTCACCGGCGCATAA 60.814 57.895 10.83 0.00 0.00 1.90
9516 20719 3.612247 AAGCTCTTCACCGGCGCAT 62.612 57.895 10.83 0.00 0.00 4.73
9517 20720 4.314440 AAGCTCTTCACCGGCGCA 62.314 61.111 10.83 0.00 0.00 6.09
9518 20721 3.491652 GAAGCTCTTCACCGGCGC 61.492 66.667 0.00 0.00 39.31 6.53
9519 20722 2.097038 CAGAAGCTCTTCACCGGCG 61.097 63.158 0.00 0.00 41.84 6.46
9520 20723 1.743252 CCAGAAGCTCTTCACCGGC 60.743 63.158 0.00 0.00 41.84 6.13
9521 20724 1.078848 CCCAGAAGCTCTTCACCGG 60.079 63.158 11.69 0.00 41.84 5.28
9522 20725 1.743252 GCCCAGAAGCTCTTCACCG 60.743 63.158 11.69 0.80 41.84 4.94
9523 20726 1.743252 CGCCCAGAAGCTCTTCACC 60.743 63.158 11.69 0.00 41.84 4.02
9524 20727 1.743252 CCGCCCAGAAGCTCTTCAC 60.743 63.158 11.69 0.00 41.84 3.18
9525 20728 2.665000 CCGCCCAGAAGCTCTTCA 59.335 61.111 11.69 0.00 41.84 3.02
9526 20729 2.821810 GCCGCCCAGAAGCTCTTC 60.822 66.667 1.52 1.52 39.78 2.87
9527 20730 4.767255 CGCCGCCCAGAAGCTCTT 62.767 66.667 0.00 0.00 0.00 2.85
9580 20783 1.371881 GCCCAGATCTAGCGTACGC 60.372 63.158 32.17 32.17 42.33 4.42
9581 20784 1.197264 GTAGCCCAGATCTAGCGTACG 59.803 57.143 11.84 11.84 0.00 3.67
9582 20785 1.197264 CGTAGCCCAGATCTAGCGTAC 59.803 57.143 10.39 11.34 0.00 3.67
9583 20786 1.520494 CGTAGCCCAGATCTAGCGTA 58.480 55.000 10.39 2.94 0.00 4.42
9584 20787 1.173444 CCGTAGCCCAGATCTAGCGT 61.173 60.000 10.39 3.70 0.00 5.07
9585 20788 0.889638 TCCGTAGCCCAGATCTAGCG 60.890 60.000 10.39 3.05 0.00 4.26
9586 20789 0.885196 CTCCGTAGCCCAGATCTAGC 59.115 60.000 8.53 8.53 0.00 3.42
9587 20790 0.885196 GCTCCGTAGCCCAGATCTAG 59.115 60.000 0.00 0.00 43.40 2.43
9588 20791 0.889638 CGCTCCGTAGCCCAGATCTA 60.890 60.000 0.00 0.00 46.68 1.98
9589 20792 2.196925 CGCTCCGTAGCCCAGATCT 61.197 63.158 0.00 0.00 46.68 2.75
9590 20793 2.336809 CGCTCCGTAGCCCAGATC 59.663 66.667 0.00 0.00 46.68 2.75
9591 20794 3.227276 CCGCTCCGTAGCCCAGAT 61.227 66.667 0.00 0.00 46.68 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.