Multiple sequence alignment - TraesCS7D01G115800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G115800 chr7D 100.000 3672 0 0 1 3672 71105566 71109237 0.000000e+00 6782.0
1 TraesCS7D01G115800 chr7D 95.032 2496 98 11 847 3320 71082442 71084933 0.000000e+00 3899.0
2 TraesCS7D01G115800 chr7D 94.724 2483 111 12 847 3320 71053223 71055694 0.000000e+00 3842.0
3 TraesCS7D01G115800 chr7D 93.299 2507 129 15 847 3320 71091023 71093523 0.000000e+00 3663.0
4 TraesCS7D01G115800 chr7D 94.560 864 45 1 1 862 71081552 71082415 0.000000e+00 1334.0
5 TraesCS7D01G115800 chr7D 93.357 858 55 2 1 858 71052338 71053193 0.000000e+00 1267.0
6 TraesCS7D01G115800 chr7D 92.666 859 55 2 1 858 71090142 71090993 0.000000e+00 1230.0
7 TraesCS7D01G115800 chr6D 97.561 41 0 1 3632 3672 112937892 112937853 6.580000e-08 69.4
8 TraesCS7D01G115800 chr6D 100.000 36 0 0 3636 3671 427342348 427342313 2.370000e-07 67.6
9 TraesCS7D01G115800 chr7A 97.436 39 1 0 3634 3672 207895034 207894996 2.370000e-07 67.6
10 TraesCS7D01G115800 chr7A 95.122 41 1 1 3631 3671 729636125 729636086 3.060000e-06 63.9
11 TraesCS7D01G115800 chr4D 93.478 46 1 2 3626 3671 508494885 508494842 2.370000e-07 67.6
12 TraesCS7D01G115800 chr7B 97.368 38 1 0 3635 3672 417637224 417637261 8.510000e-07 65.8
13 TraesCS7D01G115800 chr5D 97.368 38 1 0 3634 3671 57572198 57572161 8.510000e-07 65.8
14 TraesCS7D01G115800 chr5B 97.368 38 1 0 3634 3671 88343226 88343263 8.510000e-07 65.8
15 TraesCS7D01G115800 chr3A 84.127 63 6 4 3611 3671 12040830 12040890 1.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G115800 chr7D 71105566 71109237 3671 False 6782.0 6782 100.0000 1 3672 1 chr7D.!!$F1 3671
1 TraesCS7D01G115800 chr7D 71081552 71084933 3381 False 2616.5 3899 94.7960 1 3320 2 chr7D.!!$F3 3319
2 TraesCS7D01G115800 chr7D 71052338 71055694 3356 False 2554.5 3842 94.0405 1 3320 2 chr7D.!!$F2 3319
3 TraesCS7D01G115800 chr7D 71090142 71093523 3381 False 2446.5 3663 92.9825 1 3320 2 chr7D.!!$F4 3319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 545 0.452784 GTGCGAGCGACATCCAAAAC 60.453 55.000 0.00 0.0 0.0 2.43 F
1091 1136 1.275666 CCTCACCCATACTGTGACCA 58.724 55.000 0.00 0.0 37.8 4.02 F
1332 1377 2.190981 GCTAACGGTTGGTACATCTCG 58.809 52.381 3.07 0.0 39.3 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1893 0.177836 TGCTAGCGCCTAGAAATGCA 59.822 50.000 10.77 0.13 36.26 3.96 R
2609 2697 1.532437 GCCCAACAATTTTGCAAGAGC 59.468 47.619 0.00 0.00 42.57 4.09 R
3326 3425 0.026803 GTCTCGTGAATCATTGCGCC 59.973 55.000 4.18 0.00 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.949177 TGCTTAAGGGCTTGACTTGA 57.051 45.000 4.29 0.00 0.00 3.02
112 113 7.108841 TGCAGGTTCTCTAGACGTTATATTT 57.891 36.000 0.00 0.00 0.00 1.40
194 195 7.676683 AGTGGCTCCTAATTTGTAGATCTAA 57.323 36.000 3.40 0.00 0.00 2.10
256 257 1.378531 AAGTGCTTGACTTTGCGACA 58.621 45.000 0.00 0.00 42.70 4.35
347 348 7.839907 AGACATATTAACACCATGCATTGTTT 58.160 30.769 19.10 11.15 37.19 2.83
418 419 4.530553 GGTTTTCCCCTTGGATTACATTGT 59.469 41.667 0.00 0.00 41.40 2.71
437 438 8.451908 ACATTGTTATATTGGCTTTCCTAGAC 57.548 34.615 0.00 0.00 0.00 2.59
442 443 2.479566 TTGGCTTTCCTAGACTGCTG 57.520 50.000 0.00 0.00 30.89 4.41
544 545 0.452784 GTGCGAGCGACATCCAAAAC 60.453 55.000 0.00 0.00 0.00 2.43
569 570 8.653338 ACATAAAATACAAAGTAGTGTACGCAG 58.347 33.333 9.48 0.00 36.83 5.18
739 740 1.595993 ATGCTACCGTCACTGCGAGT 61.596 55.000 0.00 0.00 0.00 4.18
863 908 3.557595 CGTAAAGATCTCATGTCCAAGGC 59.442 47.826 0.00 0.00 0.00 4.35
895 940 1.623811 TCCACTTGAAGGCACTCCTAC 59.376 52.381 0.00 0.00 43.40 3.18
911 956 8.688151 GGCACTCCTACGATTCTATAAATAGAT 58.312 37.037 0.65 0.00 39.02 1.98
1091 1136 1.275666 CCTCACCCATACTGTGACCA 58.724 55.000 0.00 0.00 37.80 4.02
1257 1302 4.657814 AACCAATACAGTGAATCCCAGT 57.342 40.909 0.00 0.00 0.00 4.00
1272 1317 6.873605 TGAATCCCAGTGATACTATTATTGCG 59.126 38.462 0.00 0.00 31.83 4.85
1332 1377 2.190981 GCTAACGGTTGGTACATCTCG 58.809 52.381 3.07 0.00 39.30 4.04
1373 1418 9.231297 TCAGAGTGGAAGGTAATTCTTTTTATG 57.769 33.333 0.00 0.00 38.07 1.90
1409 1454 9.726034 GACTCAATAAATTACGTGCAATTTTTG 57.274 29.630 12.84 14.69 38.65 2.44
1652 1726 9.162764 ACATATTAATTGGTAAGACACACAGAC 57.837 33.333 0.00 0.00 0.00 3.51
1656 1730 4.415881 TTGGTAAGACACACAGACACAT 57.584 40.909 0.00 0.00 0.00 3.21
1807 1893 7.489435 CCACGCATCATATAGAAAACGAGATAT 59.511 37.037 0.00 0.00 0.00 1.63
1809 1895 7.009631 ACGCATCATATAGAAAACGAGATATGC 59.990 37.037 0.00 0.00 33.92 3.14
1891 1977 9.265901 CAAATCAATGAGGTTAGTATGTAGAGG 57.734 37.037 0.00 0.00 0.00 3.69
1983 2069 9.152327 TCTTCCATACATCTCTAACATTCTGAT 57.848 33.333 0.00 0.00 0.00 2.90
2062 2148 4.762251 GGGACTTTAACTGAGCAAAGTGAT 59.238 41.667 15.02 0.00 43.27 3.06
2439 2525 4.627467 AGATTTTTCTTGGATCGTGAGTCG 59.373 41.667 0.00 0.00 41.41 4.18
2464 2552 9.559958 CGCATTTCATAGAAGAAAGTGTATTTT 57.440 29.630 0.00 0.00 40.49 1.82
2496 2584 5.887598 ACCTGCAATTTCTAGCATCACATAA 59.112 36.000 0.00 0.00 40.42 1.90
2521 2609 7.448748 AAAGTAATTTAGTAACACTGGCCAG 57.551 36.000 31.60 31.60 0.00 4.85
2629 2717 1.532437 GCTCTTGCAAAATTGTTGGGC 59.468 47.619 0.00 0.00 39.41 5.36
2975 3071 8.737168 ACATATAACACATGTTGCAACTATCT 57.263 30.769 28.61 11.80 38.90 1.98
3118 3216 2.972713 AGAGCCAGGTAAGTGAGAAACA 59.027 45.455 0.00 0.00 0.00 2.83
3138 3236 6.889301 AACATTCATACCATGATTAGCCAG 57.111 37.500 0.00 0.00 39.39 4.85
3142 3240 5.133342 TCATACCATGATTAGCCAGCGCT 62.133 47.826 2.64 2.64 40.91 5.92
3178 3276 5.255687 TCTGTAATGCTCATTGGTCAATGT 58.744 37.500 19.31 6.36 46.15 2.71
3218 3316 9.816354 ATGGAATTATAAATTGTTTTCCTTCCG 57.184 29.630 12.33 0.00 34.93 4.30
3220 3318 8.255206 GGAATTATAAATTGTTTTCCTTCCGGT 58.745 33.333 0.00 0.00 31.90 5.28
3313 3412 9.262358 AGTTGTTGAGTAATTTTGTACTCTCTC 57.738 33.333 12.27 5.15 46.84 3.20
3320 3419 8.608844 AGTAATTTTGTACTCTCTCTGTTTGG 57.391 34.615 0.00 0.00 27.56 3.28
3321 3420 8.429641 AGTAATTTTGTACTCTCTCTGTTTGGA 58.570 33.333 0.00 0.00 27.56 3.53
3322 3421 7.736447 AATTTTGTACTCTCTCTGTTTGGAG 57.264 36.000 0.00 0.00 34.88 3.86
3323 3422 6.479972 TTTTGTACTCTCTCTGTTTGGAGA 57.520 37.500 0.00 0.00 39.69 3.71
3328 3427 2.377136 TCTCTGTTTGGAGAGGGGC 58.623 57.895 0.00 0.00 40.10 5.80
3329 3428 1.078848 CTCTGTTTGGAGAGGGGCG 60.079 63.158 0.00 0.00 36.57 6.13
3330 3429 2.747855 CTGTTTGGAGAGGGGCGC 60.748 66.667 0.00 0.00 0.00 6.53
3331 3430 3.551496 CTGTTTGGAGAGGGGCGCA 62.551 63.158 10.83 0.00 0.00 6.09
3332 3431 2.282180 GTTTGGAGAGGGGCGCAA 60.282 61.111 10.83 0.00 0.00 4.85
3333 3432 1.678970 GTTTGGAGAGGGGCGCAAT 60.679 57.895 10.83 0.00 0.00 3.56
3334 3433 1.678635 TTTGGAGAGGGGCGCAATG 60.679 57.895 10.83 0.00 0.00 2.82
3335 3434 2.135903 TTTGGAGAGGGGCGCAATGA 62.136 55.000 10.83 0.00 0.00 2.57
3336 3435 1.925285 TTGGAGAGGGGCGCAATGAT 61.925 55.000 10.83 0.00 0.00 2.45
3337 3436 1.152881 GGAGAGGGGCGCAATGATT 60.153 57.895 10.83 0.00 0.00 2.57
3338 3437 1.169034 GGAGAGGGGCGCAATGATTC 61.169 60.000 10.83 0.00 0.00 2.52
3339 3438 0.464373 GAGAGGGGCGCAATGATTCA 60.464 55.000 10.83 0.00 0.00 2.57
3340 3439 0.749454 AGAGGGGCGCAATGATTCAC 60.749 55.000 10.83 0.00 0.00 3.18
3341 3440 2.051804 GAGGGGCGCAATGATTCACG 62.052 60.000 10.83 0.00 0.00 4.35
3342 3441 2.112198 GGGGCGCAATGATTCACGA 61.112 57.895 10.83 0.00 0.00 4.35
3343 3442 1.353103 GGGCGCAATGATTCACGAG 59.647 57.895 10.83 0.00 0.00 4.18
3344 3443 1.089481 GGGCGCAATGATTCACGAGA 61.089 55.000 10.83 0.00 0.00 4.04
3345 3444 0.026803 GGCGCAATGATTCACGAGAC 59.973 55.000 10.83 0.00 0.00 3.36
3346 3445 0.026803 GCGCAATGATTCACGAGACC 59.973 55.000 0.30 0.00 0.00 3.85
3347 3446 1.358877 CGCAATGATTCACGAGACCA 58.641 50.000 0.00 0.00 0.00 4.02
3348 3447 1.935873 CGCAATGATTCACGAGACCAT 59.064 47.619 0.00 0.00 0.00 3.55
3349 3448 2.033407 CGCAATGATTCACGAGACCATC 60.033 50.000 0.00 0.00 0.00 3.51
3350 3449 3.201290 GCAATGATTCACGAGACCATCT 58.799 45.455 0.00 0.00 0.00 2.90
3351 3450 3.002042 GCAATGATTCACGAGACCATCTG 59.998 47.826 0.00 0.00 0.00 2.90
3352 3451 2.967599 TGATTCACGAGACCATCTGG 57.032 50.000 0.00 0.00 42.17 3.86
3353 3452 2.456577 TGATTCACGAGACCATCTGGA 58.543 47.619 2.55 0.00 38.94 3.86
3354 3453 2.166459 TGATTCACGAGACCATCTGGAC 59.834 50.000 2.55 0.00 38.94 4.02
3355 3454 1.627864 TTCACGAGACCATCTGGACA 58.372 50.000 2.55 0.00 38.94 4.02
3356 3455 0.888619 TCACGAGACCATCTGGACAC 59.111 55.000 2.55 0.00 38.94 3.67
3357 3456 0.456824 CACGAGACCATCTGGACACG 60.457 60.000 14.40 14.40 45.30 4.49
3358 3457 0.608308 ACGAGACCATCTGGACACGA 60.608 55.000 20.47 0.00 43.49 4.35
3359 3458 0.526211 CGAGACCATCTGGACACGAA 59.474 55.000 11.59 0.00 43.49 3.85
3360 3459 1.067846 CGAGACCATCTGGACACGAAA 60.068 52.381 11.59 0.00 43.49 3.46
3361 3460 2.417379 CGAGACCATCTGGACACGAAAT 60.417 50.000 11.59 0.00 43.49 2.17
3362 3461 3.190874 GAGACCATCTGGACACGAAATC 58.809 50.000 2.55 0.00 38.94 2.17
3363 3462 2.093447 AGACCATCTGGACACGAAATCC 60.093 50.000 2.55 0.00 38.94 3.01
3364 3463 1.909302 ACCATCTGGACACGAAATCCT 59.091 47.619 2.55 0.00 37.13 3.24
3365 3464 2.283298 CCATCTGGACACGAAATCCTG 58.717 52.381 0.00 0.00 37.13 3.86
3366 3465 2.355108 CCATCTGGACACGAAATCCTGT 60.355 50.000 0.00 0.00 37.13 4.00
3367 3466 3.338249 CATCTGGACACGAAATCCTGTT 58.662 45.455 0.00 0.00 37.13 3.16
3368 3467 3.040147 TCTGGACACGAAATCCTGTTC 57.960 47.619 0.00 0.00 37.13 3.18
3377 3476 4.100707 CGAAATCCTGTTCGTAGGTACA 57.899 45.455 0.00 0.00 44.20 2.90
3378 3477 3.855950 CGAAATCCTGTTCGTAGGTACAC 59.144 47.826 0.00 0.00 44.20 2.90
3379 3478 4.380233 CGAAATCCTGTTCGTAGGTACACT 60.380 45.833 0.00 0.00 44.20 3.55
3380 3479 4.715527 AATCCTGTTCGTAGGTACACTC 57.284 45.455 0.00 0.00 38.99 3.51
3381 3480 2.440409 TCCTGTTCGTAGGTACACTCC 58.560 52.381 0.00 0.00 38.99 3.85
3382 3481 1.131883 CCTGTTCGTAGGTACACTCCG 59.868 57.143 0.00 0.00 32.99 4.63
3383 3482 2.079158 CTGTTCGTAGGTACACTCCGA 58.921 52.381 0.00 0.00 0.00 4.55
3384 3483 2.079158 TGTTCGTAGGTACACTCCGAG 58.921 52.381 0.00 0.00 0.00 4.63
3385 3484 1.399791 GTTCGTAGGTACACTCCGAGG 59.600 57.143 0.00 0.00 0.00 4.63
3386 3485 0.107508 TCGTAGGTACACTCCGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
3387 3486 0.107508 CGTAGGTACACTCCGAGGGA 60.108 60.000 4.15 0.00 0.00 4.20
3388 3487 1.476471 CGTAGGTACACTCCGAGGGAT 60.476 57.143 4.15 0.00 0.00 3.85
3389 3488 1.955080 GTAGGTACACTCCGAGGGATG 59.045 57.143 4.15 0.00 0.00 3.51
3390 3489 0.335361 AGGTACACTCCGAGGGATGT 59.665 55.000 4.15 0.00 31.87 3.06
3391 3490 0.460311 GGTACACTCCGAGGGATGTG 59.540 60.000 4.15 2.60 37.11 3.21
3392 3491 0.460311 GTACACTCCGAGGGATGTGG 59.540 60.000 4.15 0.00 36.17 4.17
3393 3492 0.686441 TACACTCCGAGGGATGTGGG 60.686 60.000 4.15 0.00 36.17 4.61
3394 3493 3.083997 ACTCCGAGGGATGTGGGC 61.084 66.667 0.00 0.00 0.00 5.36
3395 3494 2.765807 CTCCGAGGGATGTGGGCT 60.766 66.667 0.00 0.00 0.00 5.19
3396 3495 1.457643 CTCCGAGGGATGTGGGCTA 60.458 63.158 0.00 0.00 0.00 3.93
3397 3496 1.457643 TCCGAGGGATGTGGGCTAG 60.458 63.158 0.00 0.00 0.00 3.42
3398 3497 1.762460 CCGAGGGATGTGGGCTAGT 60.762 63.158 0.00 0.00 0.00 2.57
3399 3498 1.443407 CGAGGGATGTGGGCTAGTG 59.557 63.158 0.00 0.00 0.00 2.74
3400 3499 1.832912 GAGGGATGTGGGCTAGTGG 59.167 63.158 0.00 0.00 0.00 4.00
3401 3500 1.694169 AGGGATGTGGGCTAGTGGG 60.694 63.158 0.00 0.00 0.00 4.61
3402 3501 2.193248 GGATGTGGGCTAGTGGGC 59.807 66.667 0.00 0.00 40.05 5.36
3409 3508 4.496336 GGCTAGTGGGCCTGGCTG 62.496 72.222 19.68 3.63 46.26 4.85
3410 3509 4.496336 GCTAGTGGGCCTGGCTGG 62.496 72.222 19.68 5.98 43.85 4.85
3411 3510 2.688666 CTAGTGGGCCTGGCTGGA 60.689 66.667 19.68 0.00 38.35 3.86
3412 3511 3.009115 TAGTGGGCCTGGCTGGAC 61.009 66.667 19.68 11.80 45.48 4.02
3422 3521 4.778143 GGCTGGACGGGTGCGAAT 62.778 66.667 0.00 0.00 0.00 3.34
3423 3522 2.746277 GCTGGACGGGTGCGAATT 60.746 61.111 0.00 0.00 0.00 2.17
3424 3523 2.332654 GCTGGACGGGTGCGAATTT 61.333 57.895 0.00 0.00 0.00 1.82
3425 3524 1.794222 CTGGACGGGTGCGAATTTC 59.206 57.895 0.00 0.00 0.00 2.17
3426 3525 0.953471 CTGGACGGGTGCGAATTTCA 60.953 55.000 0.00 0.00 0.00 2.69
3427 3526 0.953471 TGGACGGGTGCGAATTTCAG 60.953 55.000 0.00 0.00 0.00 3.02
3428 3527 0.672401 GGACGGGTGCGAATTTCAGA 60.672 55.000 0.00 0.00 0.00 3.27
3429 3528 1.153353 GACGGGTGCGAATTTCAGAA 58.847 50.000 0.00 0.00 0.00 3.02
3430 3529 1.533731 GACGGGTGCGAATTTCAGAAA 59.466 47.619 0.00 0.00 0.00 2.52
3431 3530 1.950909 ACGGGTGCGAATTTCAGAAAA 59.049 42.857 0.00 0.00 0.00 2.29
3432 3531 2.556622 ACGGGTGCGAATTTCAGAAAAT 59.443 40.909 0.00 0.00 36.64 1.82
3433 3532 3.171277 CGGGTGCGAATTTCAGAAAATC 58.829 45.455 0.00 0.00 33.93 2.17
3434 3533 3.119849 CGGGTGCGAATTTCAGAAAATCT 60.120 43.478 8.94 0.00 33.93 2.40
3435 3534 4.168760 GGGTGCGAATTTCAGAAAATCTG 58.831 43.478 8.94 0.88 45.59 2.90
3436 3535 4.168760 GGTGCGAATTTCAGAAAATCTGG 58.831 43.478 8.94 0.00 44.39 3.86
3437 3536 4.321230 GGTGCGAATTTCAGAAAATCTGGT 60.321 41.667 8.94 0.00 44.39 4.00
3438 3537 5.222631 GTGCGAATTTCAGAAAATCTGGTT 58.777 37.500 8.94 1.51 44.39 3.67
3439 3538 5.117592 GTGCGAATTTCAGAAAATCTGGTTG 59.882 40.000 8.94 0.00 44.39 3.77
3440 3539 5.221224 TGCGAATTTCAGAAAATCTGGTTGT 60.221 36.000 8.94 0.00 44.39 3.32
3441 3540 5.343325 GCGAATTTCAGAAAATCTGGTTGTC 59.657 40.000 8.94 1.23 44.39 3.18
3442 3541 5.858581 CGAATTTCAGAAAATCTGGTTGTCC 59.141 40.000 8.94 0.00 44.39 4.02
3443 3542 4.829064 TTTCAGAAAATCTGGTTGTCCG 57.171 40.909 7.47 0.00 44.39 4.79
3444 3543 3.485463 TCAGAAAATCTGGTTGTCCGT 57.515 42.857 7.47 0.00 44.39 4.69
3445 3544 3.399330 TCAGAAAATCTGGTTGTCCGTC 58.601 45.455 7.47 0.00 44.39 4.79
3446 3545 2.157668 CAGAAAATCTGGTTGTCCGTCG 59.842 50.000 0.00 0.00 40.71 5.12
3447 3546 2.036733 AGAAAATCTGGTTGTCCGTCGA 59.963 45.455 0.00 0.00 36.30 4.20
3448 3547 2.536761 AAATCTGGTTGTCCGTCGAA 57.463 45.000 0.00 0.00 36.30 3.71
3449 3548 2.536761 AATCTGGTTGTCCGTCGAAA 57.463 45.000 0.00 0.00 36.30 3.46
3450 3549 2.762535 ATCTGGTTGTCCGTCGAAAT 57.237 45.000 0.00 0.00 36.30 2.17
3451 3550 3.880047 ATCTGGTTGTCCGTCGAAATA 57.120 42.857 0.00 0.00 36.30 1.40
3452 3551 2.950433 TCTGGTTGTCCGTCGAAATAC 58.050 47.619 0.00 0.00 36.30 1.89
3453 3552 1.652124 CTGGTTGTCCGTCGAAATACG 59.348 52.381 0.00 0.00 42.49 3.06
3462 3561 2.740668 TCGAAATACGGCGACCAAC 58.259 52.632 16.62 0.69 42.82 3.77
3463 3562 0.038435 TCGAAATACGGCGACCAACA 60.038 50.000 16.62 0.00 42.82 3.33
3464 3563 0.368907 CGAAATACGGCGACCAACAG 59.631 55.000 16.62 0.00 38.46 3.16
3465 3564 1.435577 GAAATACGGCGACCAACAGT 58.564 50.000 16.62 0.00 0.00 3.55
3466 3565 1.127951 GAAATACGGCGACCAACAGTG 59.872 52.381 16.62 0.00 0.00 3.66
3467 3566 0.319083 AATACGGCGACCAACAGTGA 59.681 50.000 16.62 0.00 0.00 3.41
3468 3567 0.535335 ATACGGCGACCAACAGTGAT 59.465 50.000 16.62 0.00 0.00 3.06
3469 3568 0.389296 TACGGCGACCAACAGTGATG 60.389 55.000 16.62 0.00 0.00 3.07
3470 3569 1.667830 CGGCGACCAACAGTGATGT 60.668 57.895 0.00 0.00 0.00 3.06
3471 3570 0.389296 CGGCGACCAACAGTGATGTA 60.389 55.000 0.00 0.00 0.00 2.29
3472 3571 1.076332 GGCGACCAACAGTGATGTAC 58.924 55.000 0.00 0.00 0.00 2.90
3473 3572 0.713883 GCGACCAACAGTGATGTACG 59.286 55.000 0.00 4.69 0.00 3.67
3474 3573 1.667756 GCGACCAACAGTGATGTACGA 60.668 52.381 16.10 0.00 0.00 3.43
3475 3574 2.668250 CGACCAACAGTGATGTACGAA 58.332 47.619 0.00 0.00 0.00 3.85
3476 3575 2.407361 CGACCAACAGTGATGTACGAAC 59.593 50.000 0.00 0.00 0.00 3.95
3477 3576 3.650139 GACCAACAGTGATGTACGAACT 58.350 45.455 0.00 0.00 0.00 3.01
3478 3577 4.056050 GACCAACAGTGATGTACGAACTT 58.944 43.478 0.00 0.00 0.00 2.66
3479 3578 4.056050 ACCAACAGTGATGTACGAACTTC 58.944 43.478 0.00 0.00 0.00 3.01
3480 3579 3.432252 CCAACAGTGATGTACGAACTTCC 59.568 47.826 0.00 0.00 0.00 3.46
3481 3580 2.942710 ACAGTGATGTACGAACTTCCG 58.057 47.619 0.00 0.00 0.00 4.30
3482 3581 1.654105 CAGTGATGTACGAACTTCCGC 59.346 52.381 0.00 0.00 0.00 5.54
3483 3582 0.638746 GTGATGTACGAACTTCCGCG 59.361 55.000 0.00 0.00 0.00 6.46
3484 3583 0.457166 TGATGTACGAACTTCCGCGG 60.457 55.000 22.12 22.12 0.00 6.46
3485 3584 1.143969 GATGTACGAACTTCCGCGGG 61.144 60.000 27.83 13.23 0.00 6.13
3486 3585 3.184003 GTACGAACTTCCGCGGGC 61.184 66.667 27.83 8.98 0.00 6.13
3487 3586 3.376078 TACGAACTTCCGCGGGCT 61.376 61.111 27.83 7.15 0.00 5.19
3488 3587 3.636313 TACGAACTTCCGCGGGCTG 62.636 63.158 27.83 17.69 0.00 4.85
3490 3589 4.388499 GAACTTCCGCGGGCTGGA 62.388 66.667 27.83 1.12 0.00 3.86
3491 3590 3.682292 GAACTTCCGCGGGCTGGAT 62.682 63.158 27.83 7.07 34.91 3.41
3492 3591 3.268103 AACTTCCGCGGGCTGGATT 62.268 57.895 27.83 8.69 34.91 3.01
3493 3592 2.438434 CTTCCGCGGGCTGGATTT 60.438 61.111 27.83 0.00 34.91 2.17
3494 3593 2.749839 TTCCGCGGGCTGGATTTG 60.750 61.111 27.83 0.00 34.91 2.32
3495 3594 3.261039 TTCCGCGGGCTGGATTTGA 62.261 57.895 27.83 0.00 34.91 2.69
3496 3595 2.749839 CCGCGGGCTGGATTTGAA 60.750 61.111 20.10 0.00 0.00 2.69
3497 3596 2.339556 CCGCGGGCTGGATTTGAAA 61.340 57.895 20.10 0.00 0.00 2.69
3498 3597 1.583986 CGCGGGCTGGATTTGAAAA 59.416 52.632 0.00 0.00 0.00 2.29
3499 3598 0.173255 CGCGGGCTGGATTTGAAAAT 59.827 50.000 0.00 0.00 0.00 1.82
3500 3599 1.403679 CGCGGGCTGGATTTGAAAATA 59.596 47.619 0.00 0.00 0.00 1.40
3501 3600 2.541588 CGCGGGCTGGATTTGAAAATAG 60.542 50.000 0.00 0.00 0.00 1.73
3502 3601 2.223805 GCGGGCTGGATTTGAAAATAGG 60.224 50.000 0.00 0.00 0.00 2.57
3503 3602 2.362077 CGGGCTGGATTTGAAAATAGGG 59.638 50.000 0.00 0.00 0.00 3.53
3504 3603 2.103094 GGGCTGGATTTGAAAATAGGGC 59.897 50.000 0.00 0.00 0.00 5.19
3505 3604 2.223805 GGCTGGATTTGAAAATAGGGCG 60.224 50.000 0.00 0.00 0.00 6.13
3506 3605 2.687935 GCTGGATTTGAAAATAGGGCGA 59.312 45.455 0.00 0.00 0.00 5.54
3507 3606 3.489229 GCTGGATTTGAAAATAGGGCGAC 60.489 47.826 0.00 0.00 0.00 5.19
3508 3607 2.680841 TGGATTTGAAAATAGGGCGACG 59.319 45.455 0.00 0.00 0.00 5.12
3509 3608 2.032924 GGATTTGAAAATAGGGCGACGG 59.967 50.000 0.00 0.00 0.00 4.79
3510 3609 2.476126 TTTGAAAATAGGGCGACGGA 57.524 45.000 0.00 0.00 0.00 4.69
3511 3610 2.018542 TTGAAAATAGGGCGACGGAG 57.981 50.000 0.00 0.00 0.00 4.63
3512 3611 0.461339 TGAAAATAGGGCGACGGAGC 60.461 55.000 0.00 0.00 0.00 4.70
3540 3639 2.432628 CGTGGCTCGGGTCTGTTC 60.433 66.667 0.13 0.00 35.71 3.18
3541 3640 2.741092 GTGGCTCGGGTCTGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
3542 3641 1.070786 GTGGCTCGGGTCTGTTCAA 59.929 57.895 0.00 0.00 0.00 2.69
3543 3642 0.951040 GTGGCTCGGGTCTGTTCAAG 60.951 60.000 0.00 0.00 0.00 3.02
3544 3643 1.376037 GGCTCGGGTCTGTTCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
3545 3644 1.671742 GCTCGGGTCTGTTCAAGGA 59.328 57.895 0.00 0.00 0.00 3.36
3546 3645 0.034896 GCTCGGGTCTGTTCAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
3547 3646 1.941668 GCTCGGGTCTGTTCAAGGAAG 60.942 57.143 0.00 0.00 0.00 3.46
3548 3647 0.034896 TCGGGTCTGTTCAAGGAAGC 59.965 55.000 0.00 0.00 0.00 3.86
3549 3648 0.035458 CGGGTCTGTTCAAGGAAGCT 59.965 55.000 0.00 0.00 0.00 3.74
3550 3649 1.528129 GGGTCTGTTCAAGGAAGCTG 58.472 55.000 0.00 0.00 0.00 4.24
3551 3650 1.202818 GGGTCTGTTCAAGGAAGCTGT 60.203 52.381 0.00 0.00 0.00 4.40
3552 3651 2.147150 GGTCTGTTCAAGGAAGCTGTC 58.853 52.381 0.00 0.00 0.00 3.51
3560 3659 2.990479 GGAAGCTGTCCGTGGGAT 59.010 61.111 0.00 0.00 36.40 3.85
3561 3660 1.153349 GGAAGCTGTCCGTGGGATC 60.153 63.158 0.00 0.00 36.40 3.36
3562 3661 1.596934 GAAGCTGTCCGTGGGATCA 59.403 57.895 0.00 0.00 32.73 2.92
3563 3662 0.460987 GAAGCTGTCCGTGGGATCAG 60.461 60.000 0.00 8.80 35.51 2.90
3564 3663 0.904865 AAGCTGTCCGTGGGATCAGA 60.905 55.000 14.35 0.00 34.88 3.27
3565 3664 0.689080 AGCTGTCCGTGGGATCAGAT 60.689 55.000 14.35 8.14 34.88 2.90
3566 3665 0.179000 GCTGTCCGTGGGATCAGATT 59.821 55.000 14.35 0.00 34.88 2.40
3567 3666 1.945387 CTGTCCGTGGGATCAGATTG 58.055 55.000 0.00 0.00 34.88 2.67
3568 3667 1.482182 CTGTCCGTGGGATCAGATTGA 59.518 52.381 0.00 0.00 34.88 2.57
3569 3668 2.103771 CTGTCCGTGGGATCAGATTGAT 59.896 50.000 0.00 0.00 40.34 2.57
3570 3669 2.158914 TGTCCGTGGGATCAGATTGATG 60.159 50.000 0.00 0.00 37.20 3.07
3571 3670 1.417517 TCCGTGGGATCAGATTGATGG 59.582 52.381 0.00 0.00 37.20 3.51
3572 3671 1.141657 CCGTGGGATCAGATTGATGGT 59.858 52.381 0.00 0.00 37.20 3.55
3573 3672 2.368548 CCGTGGGATCAGATTGATGGTA 59.631 50.000 0.00 0.00 37.20 3.25
3574 3673 3.181455 CCGTGGGATCAGATTGATGGTAA 60.181 47.826 0.00 0.00 37.20 2.85
3575 3674 3.809832 CGTGGGATCAGATTGATGGTAAC 59.190 47.826 0.00 0.00 37.20 2.50
3576 3675 3.809832 GTGGGATCAGATTGATGGTAACG 59.190 47.826 0.00 0.00 37.20 3.18
3577 3676 2.808543 GGGATCAGATTGATGGTAACGC 59.191 50.000 0.00 0.00 37.20 4.84
3578 3677 2.808543 GGATCAGATTGATGGTAACGCC 59.191 50.000 0.00 0.00 37.20 5.68
3579 3678 1.934589 TCAGATTGATGGTAACGCCG 58.065 50.000 0.00 0.00 41.21 6.46
3580 3679 1.206132 TCAGATTGATGGTAACGCCGT 59.794 47.619 0.00 0.00 41.21 5.68
3584 3683 2.202974 GATGGTAACGCCGTCCCC 60.203 66.667 0.00 0.00 45.47 4.81
3585 3684 2.686106 ATGGTAACGCCGTCCCCT 60.686 61.111 6.68 0.00 41.21 4.79
3586 3685 2.248086 GATGGTAACGCCGTCCCCTT 62.248 60.000 6.68 0.86 45.47 3.95
3587 3686 2.435410 GGTAACGCCGTCCCCTTG 60.435 66.667 0.00 0.00 0.00 3.61
3588 3687 2.435410 GTAACGCCGTCCCCTTGG 60.435 66.667 0.00 0.00 0.00 3.61
3589 3688 2.604079 TAACGCCGTCCCCTTGGA 60.604 61.111 0.00 0.00 38.75 3.53
3590 3689 2.215625 TAACGCCGTCCCCTTGGAA 61.216 57.895 0.00 0.00 44.07 3.53
3591 3690 2.175035 TAACGCCGTCCCCTTGGAAG 62.175 60.000 0.00 0.00 44.07 3.46
3592 3691 3.702048 CGCCGTCCCCTTGGAAGA 61.702 66.667 0.00 0.00 44.07 2.87
3593 3692 2.046217 GCCGTCCCCTTGGAAGAC 60.046 66.667 0.00 0.00 44.07 3.01
3594 3693 2.264794 CCGTCCCCTTGGAAGACG 59.735 66.667 18.63 18.63 44.07 4.18
3595 3694 2.264794 CGTCCCCTTGGAAGACGG 59.735 66.667 18.13 0.00 44.07 4.79
3596 3695 2.580601 CGTCCCCTTGGAAGACGGT 61.581 63.158 18.13 0.00 44.07 4.83
3597 3696 1.003718 GTCCCCTTGGAAGACGGTG 60.004 63.158 0.00 0.00 44.07 4.94
3598 3697 2.359975 CCCCTTGGAAGACGGTGC 60.360 66.667 0.00 0.00 0.00 5.01
3599 3698 2.359975 CCCTTGGAAGACGGTGCC 60.360 66.667 0.00 0.00 0.00 5.01
3600 3699 2.742372 CCTTGGAAGACGGTGCCG 60.742 66.667 9.29 9.29 46.03 5.69
3610 3709 2.889617 CGGTGCCGTCAGTGGATA 59.110 61.111 1.93 0.00 34.35 2.59
3611 3710 1.216977 CGGTGCCGTCAGTGGATAA 59.783 57.895 1.93 0.00 34.35 1.75
3612 3711 0.806102 CGGTGCCGTCAGTGGATAAG 60.806 60.000 1.93 0.00 34.35 1.73
3613 3712 0.249398 GGTGCCGTCAGTGGATAAGT 59.751 55.000 0.00 0.00 0.00 2.24
3614 3713 1.479323 GGTGCCGTCAGTGGATAAGTA 59.521 52.381 0.00 0.00 0.00 2.24
3615 3714 2.093869 GGTGCCGTCAGTGGATAAGTAA 60.094 50.000 0.00 0.00 0.00 2.24
3616 3715 3.431766 GGTGCCGTCAGTGGATAAGTAAT 60.432 47.826 0.00 0.00 0.00 1.89
3617 3716 4.189231 GTGCCGTCAGTGGATAAGTAATT 58.811 43.478 0.00 0.00 0.00 1.40
3618 3717 4.034048 GTGCCGTCAGTGGATAAGTAATTG 59.966 45.833 0.00 0.00 0.00 2.32
3619 3718 3.002348 GCCGTCAGTGGATAAGTAATTGC 59.998 47.826 0.00 0.00 0.00 3.56
3620 3719 4.442706 CCGTCAGTGGATAAGTAATTGCT 58.557 43.478 0.00 0.00 0.00 3.91
3621 3720 4.876107 CCGTCAGTGGATAAGTAATTGCTT 59.124 41.667 13.52 13.52 0.00 3.91
3622 3721 5.354234 CCGTCAGTGGATAAGTAATTGCTTT 59.646 40.000 14.22 2.78 0.00 3.51
3623 3722 6.250819 CGTCAGTGGATAAGTAATTGCTTTG 58.749 40.000 14.22 5.68 0.00 2.77
3624 3723 6.030228 GTCAGTGGATAAGTAATTGCTTTGC 58.970 40.000 14.22 8.19 0.00 3.68
3625 3724 5.030295 CAGTGGATAAGTAATTGCTTTGCG 58.970 41.667 14.22 0.00 0.00 4.85
3626 3725 3.791353 GTGGATAAGTAATTGCTTTGCGC 59.209 43.478 14.22 0.00 39.77 6.09
3627 3726 3.694072 TGGATAAGTAATTGCTTTGCGCT 59.306 39.130 14.22 0.00 40.11 5.92
3628 3727 4.157656 TGGATAAGTAATTGCTTTGCGCTT 59.842 37.500 14.22 0.00 40.11 4.68
3629 3728 4.500477 GGATAAGTAATTGCTTTGCGCTTG 59.500 41.667 14.22 0.00 40.11 4.01
3630 3729 2.352503 AGTAATTGCTTTGCGCTTGG 57.647 45.000 9.73 0.00 40.11 3.61
3631 3730 1.613437 AGTAATTGCTTTGCGCTTGGT 59.387 42.857 9.73 0.00 40.11 3.67
3632 3731 1.985684 GTAATTGCTTTGCGCTTGGTC 59.014 47.619 9.73 0.00 40.11 4.02
3633 3732 0.319813 AATTGCTTTGCGCTTGGTCC 60.320 50.000 9.73 0.00 40.11 4.46
3634 3733 1.181098 ATTGCTTTGCGCTTGGTCCT 61.181 50.000 9.73 0.00 40.11 3.85
3635 3734 1.795170 TTGCTTTGCGCTTGGTCCTC 61.795 55.000 9.73 0.00 40.11 3.71
3636 3735 1.968540 GCTTTGCGCTTGGTCCTCT 60.969 57.895 9.73 0.00 35.14 3.69
3637 3736 0.673644 GCTTTGCGCTTGGTCCTCTA 60.674 55.000 9.73 0.00 35.14 2.43
3638 3737 1.808411 CTTTGCGCTTGGTCCTCTAA 58.192 50.000 9.73 0.00 0.00 2.10
3639 3738 2.151202 CTTTGCGCTTGGTCCTCTAAA 58.849 47.619 9.73 0.00 0.00 1.85
3640 3739 2.264005 TTGCGCTTGGTCCTCTAAAA 57.736 45.000 9.73 0.00 0.00 1.52
3641 3740 1.808411 TGCGCTTGGTCCTCTAAAAG 58.192 50.000 9.73 0.00 0.00 2.27
3642 3741 0.448197 GCGCTTGGTCCTCTAAAAGC 59.552 55.000 0.00 1.58 41.26 3.51
3643 3742 1.808411 CGCTTGGTCCTCTAAAAGCA 58.192 50.000 10.54 0.00 44.14 3.91
3644 3743 2.151202 CGCTTGGTCCTCTAAAAGCAA 58.849 47.619 10.54 0.00 44.14 3.91
3645 3744 2.095718 CGCTTGGTCCTCTAAAAGCAAC 60.096 50.000 10.54 0.00 44.14 4.17
3646 3745 3.149981 GCTTGGTCCTCTAAAAGCAACT 58.850 45.455 6.10 0.00 43.55 3.16
3647 3746 3.189495 GCTTGGTCCTCTAAAAGCAACTC 59.811 47.826 6.10 0.00 43.55 3.01
3648 3747 3.418684 TGGTCCTCTAAAAGCAACTCC 57.581 47.619 0.00 0.00 0.00 3.85
3649 3748 2.708861 TGGTCCTCTAAAAGCAACTCCA 59.291 45.455 0.00 0.00 0.00 3.86
3650 3749 3.137544 TGGTCCTCTAAAAGCAACTCCAA 59.862 43.478 0.00 0.00 0.00 3.53
3651 3750 3.502595 GGTCCTCTAAAAGCAACTCCAAC 59.497 47.826 0.00 0.00 0.00 3.77
3652 3751 3.186613 GTCCTCTAAAAGCAACTCCAACG 59.813 47.826 0.00 0.00 0.00 4.10
3653 3752 2.484264 CCTCTAAAAGCAACTCCAACGG 59.516 50.000 0.00 0.00 0.00 4.44
3654 3753 2.484264 CTCTAAAAGCAACTCCAACGGG 59.516 50.000 0.00 0.00 0.00 5.28
3655 3754 0.955905 TAAAAGCAACTCCAACGGGC 59.044 50.000 0.00 0.00 0.00 6.13
3656 3755 1.744320 AAAAGCAACTCCAACGGGCC 61.744 55.000 0.00 0.00 0.00 5.80
3659 3758 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
3660 3759 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.694137 ATAAAATATAACGTCTAGAGAACCTGC 57.306 33.333 0.00 0.00 0.00 4.85
112 113 8.849543 ATCCTAGGTGTTCCACTTAACTATAA 57.150 34.615 9.08 0.00 34.40 0.98
194 195 3.214328 GCCATTATGAGGTTCGGTGATT 58.786 45.455 0.00 0.00 0.00 2.57
347 348 4.264668 TGGTTAGTGTCCTTAGAGGGATGA 60.265 45.833 0.00 0.00 37.73 2.92
418 419 6.291377 CAGCAGTCTAGGAAAGCCAATATAA 58.709 40.000 0.00 0.00 36.29 0.98
430 431 3.199290 GCTCTCCAGCAGTCTAGGA 57.801 57.895 0.00 0.00 46.06 2.94
442 443 0.389948 CAACCCGTGTAGTGCTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
544 545 7.634817 GCTGCGTACACTACTTTGTATTTTATG 59.365 37.037 0.00 0.00 34.50 1.90
863 908 5.065731 GCCTTCAAGTGGACTTCAATCTATG 59.934 44.000 0.00 0.00 33.11 2.23
911 956 4.644234 TGGACGAATGAACGGTATAAGGTA 59.356 41.667 0.00 0.00 37.61 3.08
922 967 2.159627 GGATGTGTGTGGACGAATGAAC 59.840 50.000 0.00 0.00 0.00 3.18
1257 1302 1.388768 GCGCGCGCAATAATAGTATCA 59.611 47.619 46.11 0.00 41.49 2.15
1332 1377 6.503524 TCCACTCTGAAAAACTATGTTTTGC 58.496 36.000 8.85 7.83 30.87 3.68
1373 1418 6.198591 CGTAATTTATTGAGTCGGGAGAGAAC 59.801 42.308 0.00 0.00 41.26 3.01
1652 1726 3.438373 CACGATGTGTGTGTGTATGTG 57.562 47.619 0.00 0.00 43.88 3.21
1785 1871 8.189709 TGCATATCTCGTTTTCTATATGATGC 57.810 34.615 0.00 0.00 35.31 3.91
1807 1893 0.177836 TGCTAGCGCCTAGAAATGCA 59.822 50.000 10.77 0.13 36.26 3.96
1809 1895 2.072298 GGATGCTAGCGCCTAGAAATG 58.928 52.381 16.76 0.00 36.26 2.32
1983 2069 5.947566 CACATGGAGGGCATATCAAATATCA 59.052 40.000 0.00 0.00 0.00 2.15
2464 2552 5.767665 TGCTAGAAATTGCAGGTTCAGTTTA 59.232 36.000 12.42 0.00 34.84 2.01
2473 2561 4.913335 ATGTGATGCTAGAAATTGCAGG 57.087 40.909 0.00 0.00 42.74 4.85
2476 2564 8.693542 ACTTTTTATGTGATGCTAGAAATTGC 57.306 30.769 0.00 0.00 0.00 3.56
2496 2584 7.504574 ACTGGCCAGTGTTACTAAATTACTTTT 59.495 33.333 37.39 5.38 40.75 2.27
2609 2697 1.532437 GCCCAACAATTTTGCAAGAGC 59.468 47.619 0.00 0.00 42.57 4.09
2629 2717 2.677573 TATCGACCGCATGACAGCCG 62.678 60.000 0.00 0.00 0.00 5.52
2946 3042 8.105097 AGTTGCAACATGTGTTATATGTTACA 57.895 30.769 30.11 0.00 44.50 2.41
3016 3113 4.095946 AGCCCCACAATCACAAATGTATT 58.904 39.130 0.00 0.00 0.00 1.89
3068 3165 4.755411 ACAAAGTAGTCCATATGTGACGG 58.245 43.478 14.70 0.00 37.80 4.79
3118 3216 4.005650 CGCTGGCTAATCATGGTATGAAT 58.994 43.478 0.00 0.00 43.50 2.57
3138 3236 2.224066 ACAGAGTATTCACCCATAGCGC 60.224 50.000 0.00 0.00 0.00 5.92
3142 3240 6.326323 TGAGCATTACAGAGTATTCACCCATA 59.674 38.462 0.00 0.00 0.00 2.74
3218 3316 6.375945 AAATCATTCAAAAACAAAGCCACC 57.624 33.333 0.00 0.00 0.00 4.61
3220 3318 7.338957 AGGAAAAATCATTCAAAAACAAAGCCA 59.661 29.630 0.00 0.00 0.00 4.75
3313 3412 2.747855 GCGCCCCTCTCCAAACAG 60.748 66.667 0.00 0.00 0.00 3.16
3320 3419 0.464373 TGAATCATTGCGCCCCTCTC 60.464 55.000 4.18 0.00 0.00 3.20
3321 3420 0.749454 GTGAATCATTGCGCCCCTCT 60.749 55.000 4.18 0.00 0.00 3.69
3322 3421 1.729881 GTGAATCATTGCGCCCCTC 59.270 57.895 4.18 0.00 0.00 4.30
3323 3422 2.114670 CGTGAATCATTGCGCCCCT 61.115 57.895 4.18 0.00 0.00 4.79
3324 3423 2.051804 CTCGTGAATCATTGCGCCCC 62.052 60.000 4.18 0.00 0.00 5.80
3325 3424 1.089481 TCTCGTGAATCATTGCGCCC 61.089 55.000 4.18 0.00 0.00 6.13
3326 3425 0.026803 GTCTCGTGAATCATTGCGCC 59.973 55.000 4.18 0.00 0.00 6.53
3327 3426 0.026803 GGTCTCGTGAATCATTGCGC 59.973 55.000 0.00 0.00 0.00 6.09
3328 3427 1.358877 TGGTCTCGTGAATCATTGCG 58.641 50.000 0.00 0.00 0.00 4.85
3329 3428 3.002042 CAGATGGTCTCGTGAATCATTGC 59.998 47.826 6.19 0.00 0.00 3.56
3330 3429 3.558829 CCAGATGGTCTCGTGAATCATTG 59.441 47.826 6.19 6.63 0.00 2.82
3331 3430 3.452264 TCCAGATGGTCTCGTGAATCATT 59.548 43.478 0.00 0.00 36.34 2.57
3332 3431 3.033909 TCCAGATGGTCTCGTGAATCAT 58.966 45.455 0.00 4.83 36.34 2.45
3333 3432 2.166459 GTCCAGATGGTCTCGTGAATCA 59.834 50.000 0.00 0.00 36.34 2.57
3334 3433 2.166459 TGTCCAGATGGTCTCGTGAATC 59.834 50.000 0.00 0.00 36.34 2.52
3335 3434 2.093973 GTGTCCAGATGGTCTCGTGAAT 60.094 50.000 0.00 0.00 36.34 2.57
3336 3435 1.272490 GTGTCCAGATGGTCTCGTGAA 59.728 52.381 0.00 0.00 36.34 3.18
3337 3436 0.888619 GTGTCCAGATGGTCTCGTGA 59.111 55.000 0.00 0.00 36.34 4.35
3338 3437 0.456824 CGTGTCCAGATGGTCTCGTG 60.457 60.000 10.88 0.00 36.20 4.35
3339 3438 0.608308 TCGTGTCCAGATGGTCTCGT 60.608 55.000 16.17 0.00 39.75 4.18
3340 3439 0.526211 TTCGTGTCCAGATGGTCTCG 59.474 55.000 12.31 12.31 39.99 4.04
3341 3440 2.743636 TTTCGTGTCCAGATGGTCTC 57.256 50.000 0.00 0.00 36.34 3.36
3342 3441 2.093447 GGATTTCGTGTCCAGATGGTCT 60.093 50.000 0.00 0.00 35.76 3.85
3343 3442 2.093447 AGGATTTCGTGTCCAGATGGTC 60.093 50.000 0.00 0.00 38.25 4.02
3344 3443 1.909302 AGGATTTCGTGTCCAGATGGT 59.091 47.619 0.00 0.00 38.25 3.55
3345 3444 2.283298 CAGGATTTCGTGTCCAGATGG 58.717 52.381 0.00 0.00 38.25 3.51
3346 3445 2.977914 ACAGGATTTCGTGTCCAGATG 58.022 47.619 0.27 0.19 40.49 2.90
3347 3446 3.600388 GAACAGGATTTCGTGTCCAGAT 58.400 45.455 6.39 0.00 43.25 2.90
3348 3447 2.609491 CGAACAGGATTTCGTGTCCAGA 60.609 50.000 6.39 0.00 43.25 3.86
3349 3448 1.726791 CGAACAGGATTTCGTGTCCAG 59.273 52.381 6.39 1.64 43.25 3.86
3350 3449 1.790755 CGAACAGGATTTCGTGTCCA 58.209 50.000 6.39 0.00 43.25 4.02
3357 3456 5.069501 AGTGTACCTACGAACAGGATTTC 57.930 43.478 9.02 0.00 39.18 2.17
3358 3457 4.081807 GGAGTGTACCTACGAACAGGATTT 60.082 45.833 9.02 0.00 39.18 2.17
3359 3458 3.446516 GGAGTGTACCTACGAACAGGATT 59.553 47.826 9.02 0.00 39.18 3.01
3360 3459 3.022406 GGAGTGTACCTACGAACAGGAT 58.978 50.000 9.02 0.00 39.18 3.24
3361 3460 2.440409 GGAGTGTACCTACGAACAGGA 58.560 52.381 9.02 0.00 39.18 3.86
3362 3461 2.935481 GGAGTGTACCTACGAACAGG 57.065 55.000 0.00 0.00 41.87 4.00
3369 3468 1.955080 CATCCCTCGGAGTGTACCTAC 59.045 57.143 4.02 0.00 34.05 3.18
3370 3469 1.567649 ACATCCCTCGGAGTGTACCTA 59.432 52.381 4.02 0.00 34.05 3.08
3371 3470 0.335361 ACATCCCTCGGAGTGTACCT 59.665 55.000 4.02 0.00 34.05 3.08
3372 3471 0.460311 CACATCCCTCGGAGTGTACC 59.540 60.000 4.02 0.00 34.05 3.34
3373 3472 0.460311 CCACATCCCTCGGAGTGTAC 59.540 60.000 4.02 0.00 34.05 2.90
3374 3473 0.686441 CCCACATCCCTCGGAGTGTA 60.686 60.000 4.02 0.00 34.05 2.90
3375 3474 1.990060 CCCACATCCCTCGGAGTGT 60.990 63.158 4.02 0.00 34.05 3.55
3376 3475 2.903357 CCCACATCCCTCGGAGTG 59.097 66.667 4.02 0.00 34.05 3.51
3377 3476 2.238319 TAGCCCACATCCCTCGGAGT 62.238 60.000 4.02 0.00 34.05 3.85
3378 3477 1.457643 TAGCCCACATCCCTCGGAG 60.458 63.158 0.00 0.00 34.05 4.63
3379 3478 1.457643 CTAGCCCACATCCCTCGGA 60.458 63.158 0.00 0.00 35.55 4.55
3380 3479 1.762460 ACTAGCCCACATCCCTCGG 60.762 63.158 0.00 0.00 0.00 4.63
3381 3480 1.443407 CACTAGCCCACATCCCTCG 59.557 63.158 0.00 0.00 0.00 4.63
3382 3481 1.700042 CCCACTAGCCCACATCCCTC 61.700 65.000 0.00 0.00 0.00 4.30
3383 3482 1.694169 CCCACTAGCCCACATCCCT 60.694 63.158 0.00 0.00 0.00 4.20
3384 3483 2.919043 CCCACTAGCCCACATCCC 59.081 66.667 0.00 0.00 0.00 3.85
3385 3484 2.193248 GCCCACTAGCCCACATCC 59.807 66.667 0.00 0.00 0.00 3.51
3393 3492 4.496336 CCAGCCAGGCCCACTAGC 62.496 72.222 8.22 0.00 33.70 3.42
3394 3493 2.688666 TCCAGCCAGGCCCACTAG 60.689 66.667 8.22 0.00 37.29 2.57
3395 3494 3.009115 GTCCAGCCAGGCCCACTA 61.009 66.667 8.22 0.00 37.29 2.74
3405 3504 4.778143 ATTCGCACCCGTCCAGCC 62.778 66.667 0.00 0.00 35.54 4.85
3406 3505 2.253414 GAAATTCGCACCCGTCCAGC 62.253 60.000 0.00 0.00 35.54 4.85
3407 3506 0.953471 TGAAATTCGCACCCGTCCAG 60.953 55.000 0.00 0.00 35.54 3.86
3408 3507 0.953471 CTGAAATTCGCACCCGTCCA 60.953 55.000 0.00 0.00 35.54 4.02
3409 3508 0.672401 TCTGAAATTCGCACCCGTCC 60.672 55.000 0.00 0.00 35.54 4.79
3410 3509 1.153353 TTCTGAAATTCGCACCCGTC 58.847 50.000 0.00 0.00 35.54 4.79
3411 3510 1.600023 TTTCTGAAATTCGCACCCGT 58.400 45.000 0.00 0.00 35.54 5.28
3412 3511 2.697431 TTTTCTGAAATTCGCACCCG 57.303 45.000 3.31 0.00 0.00 5.28
3413 3512 4.440839 AGATTTTCTGAAATTCGCACCC 57.559 40.909 15.41 0.00 35.65 4.61
3425 3524 2.157668 CGACGGACAACCAGATTTTCTG 59.842 50.000 0.00 0.00 43.91 3.02
3426 3525 2.036733 TCGACGGACAACCAGATTTTCT 59.963 45.455 0.00 0.00 35.59 2.52
3427 3526 2.409975 TCGACGGACAACCAGATTTTC 58.590 47.619 0.00 0.00 35.59 2.29
3428 3527 2.536761 TCGACGGACAACCAGATTTT 57.463 45.000 0.00 0.00 35.59 1.82
3429 3528 2.536761 TTCGACGGACAACCAGATTT 57.463 45.000 0.00 0.00 35.59 2.17
3430 3529 2.536761 TTTCGACGGACAACCAGATT 57.463 45.000 0.00 0.00 35.59 2.40
3431 3530 2.762535 ATTTCGACGGACAACCAGAT 57.237 45.000 0.00 0.00 35.59 2.90
3432 3531 2.669113 CGTATTTCGACGGACAACCAGA 60.669 50.000 0.00 0.00 42.86 3.86
3433 3532 1.652124 CGTATTTCGACGGACAACCAG 59.348 52.381 0.00 0.00 42.86 4.00
3434 3533 1.700523 CGTATTTCGACGGACAACCA 58.299 50.000 0.00 0.00 42.86 3.67
3444 3543 0.038435 TGTTGGTCGCCGTATTTCGA 60.038 50.000 0.00 0.00 42.86 3.71
3445 3544 0.368907 CTGTTGGTCGCCGTATTTCG 59.631 55.000 0.00 0.00 39.52 3.46
3446 3545 1.127951 CACTGTTGGTCGCCGTATTTC 59.872 52.381 0.00 0.00 0.00 2.17
3447 3546 1.153353 CACTGTTGGTCGCCGTATTT 58.847 50.000 0.00 0.00 0.00 1.40
3448 3547 0.319083 TCACTGTTGGTCGCCGTATT 59.681 50.000 0.00 0.00 0.00 1.89
3449 3548 0.535335 ATCACTGTTGGTCGCCGTAT 59.465 50.000 0.00 0.00 0.00 3.06
3450 3549 0.389296 CATCACTGTTGGTCGCCGTA 60.389 55.000 0.00 0.00 0.00 4.02
3451 3550 1.667830 CATCACTGTTGGTCGCCGT 60.668 57.895 0.00 0.00 0.00 5.68
3452 3551 0.389296 TACATCACTGTTGGTCGCCG 60.389 55.000 0.00 0.00 36.79 6.46
3453 3552 1.076332 GTACATCACTGTTGGTCGCC 58.924 55.000 0.00 0.00 36.79 5.54
3454 3553 0.713883 CGTACATCACTGTTGGTCGC 59.286 55.000 0.00 0.00 36.79 5.19
3455 3554 2.341318 TCGTACATCACTGTTGGTCG 57.659 50.000 0.00 0.00 36.79 4.79
3456 3555 3.650139 AGTTCGTACATCACTGTTGGTC 58.350 45.455 0.00 0.00 36.79 4.02
3457 3556 3.746045 AGTTCGTACATCACTGTTGGT 57.254 42.857 0.00 0.00 36.79 3.67
3458 3557 3.432252 GGAAGTTCGTACATCACTGTTGG 59.568 47.826 0.00 0.00 36.79 3.77
3459 3558 3.121279 CGGAAGTTCGTACATCACTGTTG 59.879 47.826 0.00 0.00 36.79 3.33
3460 3559 3.314553 CGGAAGTTCGTACATCACTGTT 58.685 45.455 0.00 0.00 36.79 3.16
3461 3560 2.925306 GCGGAAGTTCGTACATCACTGT 60.925 50.000 0.00 0.00 39.49 3.55
3462 3561 1.654105 GCGGAAGTTCGTACATCACTG 59.346 52.381 0.00 0.00 0.00 3.66
3463 3562 1.731424 CGCGGAAGTTCGTACATCACT 60.731 52.381 0.00 0.00 0.00 3.41
3464 3563 0.638746 CGCGGAAGTTCGTACATCAC 59.361 55.000 0.00 0.00 0.00 3.06
3465 3564 0.457166 CCGCGGAAGTTCGTACATCA 60.457 55.000 24.07 0.00 0.00 3.07
3466 3565 1.143969 CCCGCGGAAGTTCGTACATC 61.144 60.000 30.73 0.00 0.00 3.06
3467 3566 1.153706 CCCGCGGAAGTTCGTACAT 60.154 57.895 30.73 0.00 0.00 2.29
3468 3567 2.259204 CCCGCGGAAGTTCGTACA 59.741 61.111 30.73 0.00 0.00 2.90
3469 3568 3.184003 GCCCGCGGAAGTTCGTAC 61.184 66.667 30.73 0.00 0.00 3.67
3470 3569 3.376078 AGCCCGCGGAAGTTCGTA 61.376 61.111 30.73 0.00 0.00 3.43
3473 3572 3.682292 ATCCAGCCCGCGGAAGTTC 62.682 63.158 30.73 9.96 35.77 3.01
3474 3573 2.764637 AAATCCAGCCCGCGGAAGTT 62.765 55.000 30.73 5.66 35.77 2.66
3475 3574 3.268103 AAATCCAGCCCGCGGAAGT 62.268 57.895 30.73 7.50 35.77 3.01
3476 3575 2.438434 AAATCCAGCCCGCGGAAG 60.438 61.111 30.73 15.75 35.77 3.46
3477 3576 2.749839 CAAATCCAGCCCGCGGAA 60.750 61.111 30.73 6.66 35.77 4.30
3478 3577 2.756321 TTTCAAATCCAGCCCGCGGA 62.756 55.000 30.73 6.25 36.84 5.54
3479 3578 1.872197 TTTTCAAATCCAGCCCGCGG 61.872 55.000 21.04 21.04 0.00 6.46
3480 3579 0.173255 ATTTTCAAATCCAGCCCGCG 59.827 50.000 0.00 0.00 0.00 6.46
3481 3580 2.223805 CCTATTTTCAAATCCAGCCCGC 60.224 50.000 0.00 0.00 0.00 6.13
3482 3581 2.362077 CCCTATTTTCAAATCCAGCCCG 59.638 50.000 0.00 0.00 0.00 6.13
3483 3582 2.103094 GCCCTATTTTCAAATCCAGCCC 59.897 50.000 0.00 0.00 0.00 5.19
3484 3583 2.223805 CGCCCTATTTTCAAATCCAGCC 60.224 50.000 0.00 0.00 0.00 4.85
3485 3584 2.687935 TCGCCCTATTTTCAAATCCAGC 59.312 45.455 0.00 0.00 0.00 4.85
3486 3585 3.242739 CGTCGCCCTATTTTCAAATCCAG 60.243 47.826 0.00 0.00 0.00 3.86
3487 3586 2.680841 CGTCGCCCTATTTTCAAATCCA 59.319 45.455 0.00 0.00 0.00 3.41
3488 3587 2.032924 CCGTCGCCCTATTTTCAAATCC 59.967 50.000 0.00 0.00 0.00 3.01
3489 3588 2.940410 TCCGTCGCCCTATTTTCAAATC 59.060 45.455 0.00 0.00 0.00 2.17
3490 3589 2.943033 CTCCGTCGCCCTATTTTCAAAT 59.057 45.455 0.00 0.00 0.00 2.32
3491 3590 2.352388 CTCCGTCGCCCTATTTTCAAA 58.648 47.619 0.00 0.00 0.00 2.69
3492 3591 2.010043 GCTCCGTCGCCCTATTTTCAA 61.010 52.381 0.00 0.00 0.00 2.69
3493 3592 0.461339 GCTCCGTCGCCCTATTTTCA 60.461 55.000 0.00 0.00 0.00 2.69
3494 3593 1.158484 GGCTCCGTCGCCCTATTTTC 61.158 60.000 0.97 0.00 44.41 2.29
3495 3594 1.153229 GGCTCCGTCGCCCTATTTT 60.153 57.895 0.97 0.00 44.41 1.82
3496 3595 2.504519 GGCTCCGTCGCCCTATTT 59.495 61.111 0.97 0.00 44.41 1.40
3523 3622 2.432628 GAACAGACCCGAGCCACG 60.433 66.667 0.00 0.00 42.18 4.94
3524 3623 0.951040 CTTGAACAGACCCGAGCCAC 60.951 60.000 0.00 0.00 0.00 5.01
3525 3624 1.371183 CTTGAACAGACCCGAGCCA 59.629 57.895 0.00 0.00 0.00 4.75
3526 3625 1.376037 CCTTGAACAGACCCGAGCC 60.376 63.158 0.00 0.00 0.00 4.70
3527 3626 0.034896 TTCCTTGAACAGACCCGAGC 59.965 55.000 0.00 0.00 0.00 5.03
3528 3627 1.941668 GCTTCCTTGAACAGACCCGAG 60.942 57.143 0.00 0.00 0.00 4.63
3529 3628 0.034896 GCTTCCTTGAACAGACCCGA 59.965 55.000 0.00 0.00 0.00 5.14
3530 3629 0.035458 AGCTTCCTTGAACAGACCCG 59.965 55.000 0.00 0.00 0.00 5.28
3531 3630 1.202818 ACAGCTTCCTTGAACAGACCC 60.203 52.381 0.00 0.00 0.00 4.46
3532 3631 2.147150 GACAGCTTCCTTGAACAGACC 58.853 52.381 0.00 0.00 0.00 3.85
3533 3632 2.147150 GGACAGCTTCCTTGAACAGAC 58.853 52.381 7.46 0.00 41.95 3.51
3534 3633 1.270305 CGGACAGCTTCCTTGAACAGA 60.270 52.381 11.56 0.00 43.25 3.41
3535 3634 1.151668 CGGACAGCTTCCTTGAACAG 58.848 55.000 11.56 0.00 43.25 3.16
3536 3635 0.468226 ACGGACAGCTTCCTTGAACA 59.532 50.000 11.56 0.00 43.25 3.18
3537 3636 0.868406 CACGGACAGCTTCCTTGAAC 59.132 55.000 12.91 0.00 44.92 3.18
3538 3637 0.250295 CCACGGACAGCTTCCTTGAA 60.250 55.000 17.31 0.00 44.92 2.69
3539 3638 1.371183 CCACGGACAGCTTCCTTGA 59.629 57.895 17.31 0.00 44.92 3.02
3540 3639 1.672356 CCCACGGACAGCTTCCTTG 60.672 63.158 11.84 11.84 43.25 3.61
3541 3640 1.201429 ATCCCACGGACAGCTTCCTT 61.201 55.000 11.56 1.92 43.25 3.36
3542 3641 1.613630 ATCCCACGGACAGCTTCCT 60.614 57.895 11.56 0.00 43.25 3.36
3543 3642 1.153349 GATCCCACGGACAGCTTCC 60.153 63.158 5.20 5.20 41.75 3.46
3544 3643 0.460987 CTGATCCCACGGACAGCTTC 60.461 60.000 0.00 0.00 32.98 3.86
3545 3644 0.904865 TCTGATCCCACGGACAGCTT 60.905 55.000 0.00 0.00 32.98 3.74
3546 3645 0.689080 ATCTGATCCCACGGACAGCT 60.689 55.000 0.00 0.00 32.98 4.24
3547 3646 0.179000 AATCTGATCCCACGGACAGC 59.821 55.000 0.00 0.00 32.98 4.40
3548 3647 1.482182 TCAATCTGATCCCACGGACAG 59.518 52.381 0.00 0.00 32.98 3.51
3549 3648 1.567357 TCAATCTGATCCCACGGACA 58.433 50.000 0.00 0.00 32.98 4.02
3550 3649 2.487934 CATCAATCTGATCCCACGGAC 58.512 52.381 0.00 0.00 34.28 4.79
3551 3650 1.417517 CCATCAATCTGATCCCACGGA 59.582 52.381 0.00 0.00 34.28 4.69
3552 3651 1.141657 ACCATCAATCTGATCCCACGG 59.858 52.381 0.00 0.00 34.28 4.94
3553 3652 2.627515 ACCATCAATCTGATCCCACG 57.372 50.000 0.00 0.00 34.28 4.94
3554 3653 3.809832 CGTTACCATCAATCTGATCCCAC 59.190 47.826 0.00 0.00 34.28 4.61
3555 3654 3.744214 GCGTTACCATCAATCTGATCCCA 60.744 47.826 0.00 0.00 34.28 4.37
3556 3655 2.808543 GCGTTACCATCAATCTGATCCC 59.191 50.000 0.00 0.00 34.28 3.85
3557 3656 2.808543 GGCGTTACCATCAATCTGATCC 59.191 50.000 0.00 0.00 34.28 3.36
3558 3657 2.476619 CGGCGTTACCATCAATCTGATC 59.523 50.000 0.00 0.00 34.28 2.92
3559 3658 2.158957 ACGGCGTTACCATCAATCTGAT 60.159 45.455 6.77 0.00 37.65 2.90
3560 3659 1.206132 ACGGCGTTACCATCAATCTGA 59.794 47.619 6.77 0.00 39.03 3.27
3561 3660 1.593006 GACGGCGTTACCATCAATCTG 59.407 52.381 16.19 0.00 39.03 2.90
3562 3661 1.472728 GGACGGCGTTACCATCAATCT 60.473 52.381 16.19 0.00 39.03 2.40
3563 3662 0.935196 GGACGGCGTTACCATCAATC 59.065 55.000 16.19 0.00 39.03 2.67
3564 3663 0.463116 GGGACGGCGTTACCATCAAT 60.463 55.000 23.94 0.00 39.03 2.57
3565 3664 1.078988 GGGACGGCGTTACCATCAA 60.079 57.895 23.94 0.00 39.03 2.57
3566 3665 2.580276 GGGACGGCGTTACCATCA 59.420 61.111 23.94 0.00 39.03 3.07
3567 3666 2.202974 GGGGACGGCGTTACCATC 60.203 66.667 27.85 13.44 39.03 3.51
3568 3667 2.295602 AAGGGGACGGCGTTACCAT 61.296 57.895 27.85 21.83 39.03 3.55
3569 3668 2.924101 AAGGGGACGGCGTTACCA 60.924 61.111 27.85 0.00 39.03 3.25
3570 3669 2.435410 CAAGGGGACGGCGTTACC 60.435 66.667 16.19 19.66 0.00 2.85
3571 3670 2.435410 CCAAGGGGACGGCGTTAC 60.435 66.667 16.19 10.79 35.59 2.50
3572 3671 2.175035 CTTCCAAGGGGACGGCGTTA 62.175 60.000 16.19 0.00 44.89 3.18
3573 3672 3.546714 CTTCCAAGGGGACGGCGTT 62.547 63.158 16.19 0.00 44.89 4.84
3574 3673 4.016706 CTTCCAAGGGGACGGCGT 62.017 66.667 14.65 14.65 44.89 5.68
3575 3674 3.702048 TCTTCCAAGGGGACGGCG 61.702 66.667 4.80 4.80 44.89 6.46
3576 3675 2.046217 GTCTTCCAAGGGGACGGC 60.046 66.667 0.00 0.00 44.89 5.68
3577 3676 2.264794 CGTCTTCCAAGGGGACGG 59.735 66.667 19.68 8.16 44.89 4.79
3578 3677 2.264794 CCGTCTTCCAAGGGGACG 59.735 66.667 20.15 20.15 44.89 4.79
3579 3678 1.003718 CACCGTCTTCCAAGGGGAC 60.004 63.158 4.84 0.00 44.89 4.46
3580 3679 2.890766 GCACCGTCTTCCAAGGGGA 61.891 63.158 4.84 0.00 43.03 4.81
3581 3680 2.359975 GCACCGTCTTCCAAGGGG 60.360 66.667 0.00 0.00 0.00 4.79
3582 3681 2.359975 GGCACCGTCTTCCAAGGG 60.360 66.667 0.00 0.00 0.00 3.95
3583 3682 2.742372 CGGCACCGTCTTCCAAGG 60.742 66.667 0.00 0.00 34.35 3.61
3593 3692 0.806102 CTTATCCACTGACGGCACCG 60.806 60.000 7.71 7.71 46.03 4.94
3594 3693 0.249398 ACTTATCCACTGACGGCACC 59.751 55.000 0.00 0.00 0.00 5.01
3595 3694 2.953466 TACTTATCCACTGACGGCAC 57.047 50.000 0.00 0.00 0.00 5.01
3596 3695 4.188462 CAATTACTTATCCACTGACGGCA 58.812 43.478 0.00 0.00 0.00 5.69
3597 3696 3.002348 GCAATTACTTATCCACTGACGGC 59.998 47.826 0.00 0.00 0.00 5.68
3598 3697 4.442706 AGCAATTACTTATCCACTGACGG 58.557 43.478 0.00 0.00 0.00 4.79
3599 3698 6.250819 CAAAGCAATTACTTATCCACTGACG 58.749 40.000 0.00 0.00 0.00 4.35
3600 3699 6.030228 GCAAAGCAATTACTTATCCACTGAC 58.970 40.000 0.00 0.00 0.00 3.51
3601 3700 5.163764 CGCAAAGCAATTACTTATCCACTGA 60.164 40.000 0.00 0.00 0.00 3.41
3602 3701 5.030295 CGCAAAGCAATTACTTATCCACTG 58.970 41.667 0.00 0.00 0.00 3.66
3603 3702 5.235305 CGCAAAGCAATTACTTATCCACT 57.765 39.130 0.00 0.00 0.00 4.00
3619 3718 1.808411 TTAGAGGACCAAGCGCAAAG 58.192 50.000 11.47 0.00 0.00 2.77
3620 3719 2.264005 TTTAGAGGACCAAGCGCAAA 57.736 45.000 11.47 0.00 0.00 3.68
3621 3720 2.151202 CTTTTAGAGGACCAAGCGCAA 58.849 47.619 11.47 0.00 0.00 4.85
3622 3721 1.808411 CTTTTAGAGGACCAAGCGCA 58.192 50.000 11.47 0.00 0.00 6.09
3623 3722 0.448197 GCTTTTAGAGGACCAAGCGC 59.552 55.000 0.00 0.00 32.83 5.92
3624 3723 1.808411 TGCTTTTAGAGGACCAAGCG 58.192 50.000 8.50 0.00 43.88 4.68
3625 3724 3.149981 AGTTGCTTTTAGAGGACCAAGC 58.850 45.455 6.56 6.56 41.75 4.01
3626 3725 3.753797 GGAGTTGCTTTTAGAGGACCAAG 59.246 47.826 0.00 0.00 0.00 3.61
3627 3726 3.137544 TGGAGTTGCTTTTAGAGGACCAA 59.862 43.478 0.00 0.00 0.00 3.67
3628 3727 2.708861 TGGAGTTGCTTTTAGAGGACCA 59.291 45.455 0.00 0.00 0.00 4.02
3629 3728 3.418684 TGGAGTTGCTTTTAGAGGACC 57.581 47.619 0.00 0.00 0.00 4.46
3630 3729 3.186613 CGTTGGAGTTGCTTTTAGAGGAC 59.813 47.826 0.00 0.00 0.00 3.85
3631 3730 3.399330 CGTTGGAGTTGCTTTTAGAGGA 58.601 45.455 0.00 0.00 0.00 3.71
3632 3731 2.484264 CCGTTGGAGTTGCTTTTAGAGG 59.516 50.000 0.00 0.00 0.00 3.69
3633 3732 2.484264 CCCGTTGGAGTTGCTTTTAGAG 59.516 50.000 0.00 0.00 0.00 2.43
3634 3733 2.500229 CCCGTTGGAGTTGCTTTTAGA 58.500 47.619 0.00 0.00 0.00 2.10
3635 3734 1.068541 GCCCGTTGGAGTTGCTTTTAG 60.069 52.381 0.00 0.00 0.00 1.85
3636 3735 0.955905 GCCCGTTGGAGTTGCTTTTA 59.044 50.000 0.00 0.00 0.00 1.52
3637 3736 1.739667 GCCCGTTGGAGTTGCTTTT 59.260 52.632 0.00 0.00 0.00 2.27
3638 3737 2.200337 GGCCCGTTGGAGTTGCTTT 61.200 57.895 0.00 0.00 0.00 3.51
3639 3738 2.597510 GGCCCGTTGGAGTTGCTT 60.598 61.111 0.00 0.00 0.00 3.91
3642 3741 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
3643 3742 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
3654 3753 4.668118 TCGTCCGTTTGGGTCGGC 62.668 66.667 0.00 0.00 45.67 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.