Multiple sequence alignment - TraesCS7D01G115700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G115700 chr7D 100.000 3694 0 0 1 3694 71090177 71093870 0.000000e+00 6822.0
1 TraesCS7D01G115700 chr7D 93.454 3712 209 20 1 3694 71081587 71085282 0.000000e+00 5478.0
2 TraesCS7D01G115700 chr7D 92.258 3707 237 27 1 3694 71052373 71056042 0.000000e+00 5210.0
3 TraesCS7D01G115700 chr7D 93.299 2507 129 15 847 3347 71106412 71108885 0.000000e+00 3663.0
4 TraesCS7D01G115700 chr7D 92.354 824 55 2 1 817 71105601 71106423 0.000000e+00 1166.0
5 TraesCS7D01G115700 chr7D 82.716 243 37 5 3456 3694 71077708 71077949 1.040000e-50 211.0
6 TraesCS7D01G115700 chr7D 81.739 115 17 2 3091 3202 614698296 614698409 3.930000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G115700 chr7D 71090177 71093870 3693 False 6822.0 6822 100.0000 1 3694 1 chr7D.!!$F2 3693
1 TraesCS7D01G115700 chr7D 71052373 71056042 3669 False 5210.0 5210 92.2580 1 3694 1 chr7D.!!$F1 3693
2 TraesCS7D01G115700 chr7D 71077708 71085282 7574 False 2844.5 5478 88.0850 1 3694 2 chr7D.!!$F4 3693
3 TraesCS7D01G115700 chr7D 71105601 71108885 3284 False 2414.5 3663 92.8265 1 3347 2 chr7D.!!$F5 3346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 4383 0.037697 TTAGGTGTGCGAGCGACATT 60.038 50.0 0.0 0.91 0.00 2.71 F
893 4782 0.606673 GTCCACTTGAAGGCACTCCC 60.607 60.0 0.0 0.00 38.49 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 5487 0.040425 GGTCGTTGCTTGCATCGTTT 60.04 50.000 20.53 0.0 0.0 3.60 R
2764 6685 1.480312 CCCATCCTTCAAACCCACACA 60.48 52.381 0.00 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 4001 5.431765 AGGATTCGATTGCAGTATGAGTTT 58.568 37.500 1.65 0.00 39.69 2.66
124 4004 6.037610 GGATTCGATTGCAGTATGAGTTTCTT 59.962 38.462 0.00 0.00 39.69 2.52
152 4032 4.853924 AACAAGTGGCTCCTAATTTGTG 57.146 40.909 0.00 0.00 0.00 3.33
165 4045 7.472663 GCTCCTAATTTGTGGATCTAGATCACT 60.473 40.741 29.33 14.10 39.54 3.41
170 4050 6.358974 TTTGTGGATCTAGATCACTGAACA 57.641 37.500 29.33 21.17 39.54 3.18
180 4060 8.255111 TCTAGATCACTGAACATCATAATGGT 57.745 34.615 0.00 0.00 37.19 3.55
239 4119 4.737598 CGACGTCGCTTTGAATACTATTG 58.262 43.478 26.59 0.00 0.00 1.90
242 4122 6.091123 ACGTCGCTTTGAATACTATTGAAC 57.909 37.500 0.00 0.00 0.00 3.18
316 4203 4.404640 CATGCATTGTTCCATCCCTCTAT 58.595 43.478 0.00 0.00 0.00 1.98
360 4247 5.949787 CGTCATATTTGTACTTCGGTTTTCG 59.050 40.000 0.00 0.00 40.90 3.46
392 4279 3.385755 ACATTGCAATATTGGCTTCCCTC 59.614 43.478 12.53 0.00 0.00 4.30
496 4383 0.037697 TTAGGTGTGCGAGCGACATT 60.038 50.000 0.00 0.91 0.00 2.71
497 4384 0.812549 TAGGTGTGCGAGCGACATTA 59.187 50.000 0.00 0.22 0.00 1.90
559 4446 3.813166 CGCGGTTGGGTAAATCATTCTAT 59.187 43.478 0.00 0.00 0.00 1.98
624 4511 8.122952 GGATTCAACATCCTATTAGAAAACACG 58.877 37.037 0.00 0.00 35.36 4.49
676 4563 8.943002 CCAAATACTAAAAAGTTGATACGGTCT 58.057 33.333 0.00 0.00 0.00 3.85
681 4568 8.488651 ACTAAAAAGTTGATACGGTCTAATGG 57.511 34.615 0.00 0.00 0.00 3.16
831 4719 6.206395 TCACATGTCAAAACAAAGTGTCAT 57.794 33.333 0.00 0.00 41.99 3.06
893 4782 0.606673 GTCCACTTGAAGGCACTCCC 60.607 60.000 0.00 0.00 38.49 4.30
950 4839 1.135960 TCCACACACATCCACTTCCA 58.864 50.000 0.00 0.00 0.00 3.53
969 4858 2.954989 CCACTCTACTAGCTCATCTGCA 59.045 50.000 0.00 0.00 34.99 4.41
979 4868 3.022406 AGCTCATCTGCATTTTTCTCCC 58.978 45.455 0.00 0.00 34.99 4.30
1122 5011 3.634397 AATGAGCTTAGCTTGCACCTA 57.366 42.857 8.58 0.00 39.88 3.08
1128 5017 4.223953 AGCTTAGCTTGCACCTATACCTA 58.776 43.478 0.00 0.00 33.89 3.08
1275 5164 3.987868 CCAGCGATACTATTATTGCACGT 59.012 43.478 13.24 0.00 44.82 4.49
1317 5206 3.134804 AGGCGAGTAGAACCAATGCTAAT 59.865 43.478 0.00 0.00 0.00 1.73
1400 5289 7.837863 TCTCTCCTGACTCAATAAATTACGTT 58.162 34.615 0.00 0.00 0.00 3.99
1526 5415 6.280643 AGAAACTCCTGGCAAAAATACAAAC 58.719 36.000 0.00 0.00 0.00 2.93
1598 5487 9.126151 TTGAACTTTTAGATCACAATGGTACAA 57.874 29.630 0.00 0.00 31.17 2.41
1614 5503 1.476074 ACAAAACGATGCAAGCAACG 58.524 45.000 20.58 20.58 45.51 4.10
1622 5511 0.241749 ATGCAAGCAACGACCACATG 59.758 50.000 0.00 0.00 0.00 3.21
1639 5528 4.746115 CCACATGCACACATATTAATTGGC 59.254 41.667 0.00 0.00 33.67 4.52
1651 5569 3.641437 TTAATTGGCAAGACACACAGC 57.359 42.857 5.96 0.00 0.00 4.40
1654 5572 3.034030 GGCAAGACACACAGCCAC 58.966 61.111 0.00 0.00 46.26 5.01
1655 5573 1.823470 GGCAAGACACACAGCCACA 60.823 57.895 0.00 0.00 46.26 4.17
1656 5574 1.356624 GCAAGACACACAGCCACAC 59.643 57.895 0.00 0.00 0.00 3.82
1657 5575 1.375853 GCAAGACACACAGCCACACA 61.376 55.000 0.00 0.00 0.00 3.72
1658 5576 0.378257 CAAGACACACAGCCACACAC 59.622 55.000 0.00 0.00 0.00 3.82
1659 5577 0.035534 AAGACACACAGCCACACACA 60.036 50.000 0.00 0.00 0.00 3.72
1660 5578 0.744414 AGACACACAGCCACACACAC 60.744 55.000 0.00 0.00 0.00 3.82
1661 5579 0.744414 GACACACAGCCACACACACT 60.744 55.000 0.00 0.00 0.00 3.55
1662 5580 1.026182 ACACACAGCCACACACACTG 61.026 55.000 0.00 0.00 37.45 3.66
1663 5581 1.451927 ACACAGCCACACACACTGG 60.452 57.895 0.00 0.00 35.70 4.00
1664 5582 1.451927 CACAGCCACACACACTGGT 60.452 57.895 0.00 0.00 35.70 4.00
1665 5583 0.179059 CACAGCCACACACACTGGTA 60.179 55.000 0.00 0.00 35.70 3.25
1666 5584 0.544223 ACAGCCACACACACTGGTAA 59.456 50.000 0.00 0.00 35.70 2.85
1667 5585 1.229428 CAGCCACACACACTGGTAAG 58.771 55.000 0.00 0.00 0.00 2.34
1668 5586 1.128200 AGCCACACACACTGGTAAGA 58.872 50.000 0.00 0.00 0.00 2.10
1669 5587 1.202651 AGCCACACACACTGGTAAGAC 60.203 52.381 0.00 0.00 0.00 3.01
1670 5588 1.474320 GCCACACACACTGGTAAGACA 60.474 52.381 0.00 0.00 0.00 3.41
1671 5589 2.210116 CCACACACACTGGTAAGACAC 58.790 52.381 0.00 0.00 0.00 3.67
1672 5590 1.858458 CACACACACTGGTAAGACACG 59.142 52.381 0.00 0.00 0.00 4.49
1673 5591 0.859232 CACACACTGGTAAGACACGC 59.141 55.000 0.00 0.00 0.00 5.34
1674 5592 0.462375 ACACACTGGTAAGACACGCA 59.538 50.000 0.00 0.00 0.00 5.24
1675 5593 1.139989 CACACTGGTAAGACACGCAG 58.860 55.000 0.00 0.00 33.85 5.18
1676 5594 0.600255 ACACTGGTAAGACACGCAGC 60.600 55.000 0.00 0.00 31.98 5.25
1692 5610 0.740149 CAGCCACACACACACACATT 59.260 50.000 0.00 0.00 0.00 2.71
1707 5625 2.813754 ACACATTGTGCACATCCACTAC 59.186 45.455 22.39 0.00 36.98 2.73
1712 5630 2.345876 TGTGCACATCCACTACAATCG 58.654 47.619 17.42 0.00 36.68 3.34
1745 5663 6.425417 TGTTGCGAACACATGAGATTACTAAA 59.575 34.615 0.00 0.00 36.25 1.85
1970 5888 5.351465 ACTTCGGCACATAGTAAGTTTGATG 59.649 40.000 0.00 0.00 0.00 3.07
2000 5918 9.535878 GTTAAATCTTCCATACCTCTCTAACAG 57.464 37.037 0.00 0.00 0.00 3.16
2002 5920 7.741554 AATCTTCCATACCTCTCTAACAGTT 57.258 36.000 0.00 0.00 0.00 3.16
2005 5923 5.086104 TCCATACCTCTCTAACAGTTTGC 57.914 43.478 0.00 0.00 0.00 3.68
2129 6048 4.164413 GGGACTGGAGAATTTACTAAGGCT 59.836 45.833 0.00 0.00 0.00 4.58
2251 6170 5.368989 AGCTGTAAGTACAAGTGAAGCTTT 58.631 37.500 0.00 0.00 35.50 3.51
2342 6261 5.878669 CCGTAATTTAACTAAGGGTTGCTCT 59.121 40.000 0.00 0.00 38.75 4.09
2366 6285 9.842775 TCTCGTACTCTATTAGGATGAAGTTTA 57.157 33.333 0.00 0.00 33.42 2.01
2422 6341 7.019418 GGCTAAAATGTCGTCGTTAAAGAATT 58.981 34.615 0.00 0.00 0.00 2.17
2455 6374 8.862550 ATCAATAAAGATTTTTCTTGGATCGC 57.137 30.769 6.90 0.00 33.55 4.58
2482 6403 8.092521 AGTCACATTTCATAGAAGAAAGTGTG 57.907 34.615 16.66 16.66 41.63 3.82
2584 6505 9.758651 GGTACATATGTGAGTTGTATATGACAA 57.241 33.333 18.81 0.00 46.03 3.18
2698 6619 3.943381 TGCTGCAAGAAATACTGATGAGG 59.057 43.478 0.00 0.00 34.07 3.86
2708 6629 6.996879 AGAAATACTGATGAGGTCAATGATGG 59.003 38.462 0.00 0.00 36.14 3.51
2841 6762 6.561614 TCAGTTCTCTTTATATCGTGTGACC 58.438 40.000 0.00 0.00 0.00 4.02
2862 6783 3.307410 CCATGTGTGTTTGGAGCTACCTA 60.307 47.826 0.00 0.00 39.86 3.08
2863 6784 4.323417 CATGTGTGTTTGGAGCTACCTAA 58.677 43.478 0.00 0.00 39.86 2.69
2904 6825 9.500701 AGAATAATAAAATTGGTATGGTTGGGT 57.499 29.630 0.00 0.00 0.00 4.51
2905 6826 9.541143 GAATAATAAAATTGGTATGGTTGGGTG 57.459 33.333 0.00 0.00 0.00 4.61
2919 6840 5.701224 TGGTTGGGTGAAATTACTCTCTTT 58.299 37.500 0.00 0.00 0.00 2.52
3064 6989 6.678568 AAAATACATTTGTGATTGTGGGGA 57.321 33.333 0.00 0.00 0.00 4.81
3065 6990 5.920193 AATACATTTGTGATTGTGGGGAG 57.080 39.130 0.00 0.00 0.00 4.30
3066 6991 3.243359 ACATTTGTGATTGTGGGGAGT 57.757 42.857 0.00 0.00 0.00 3.85
3086 7011 8.534496 GGGGAGTGTATAGTTTTTAGACTTGTA 58.466 37.037 0.00 0.00 0.00 2.41
3110 7036 3.198853 TGGAATTCCGTCACATATGGACA 59.801 43.478 19.57 0.00 43.32 4.02
3115 7041 3.595173 TCCGTCACATATGGACAACTTG 58.405 45.455 18.49 3.79 38.44 3.16
3135 7061 2.965831 TGGTTATGCTAGAGCCAGGTAG 59.034 50.000 0.00 0.00 41.18 3.18
3200 7126 7.066284 GTGAATACTCTGTAATGCTCATTGGTT 59.934 37.037 5.43 0.00 32.50 3.67
3246 7172 9.265862 TGGAATTATAAATTGTTGTCCTTCCAT 57.734 29.630 5.98 0.00 34.93 3.41
3287 7213 8.882415 ATGATTTTTCCTCATGATTTGTATGC 57.118 30.769 0.00 0.00 32.20 3.14
3354 7281 7.202016 TGTACTCTCTTTGTTTGCCTTTATG 57.798 36.000 0.00 0.00 0.00 1.90
3440 7367 3.307269 CCTCACATCACTCACACTTCCAT 60.307 47.826 0.00 0.00 0.00 3.41
3566 7494 6.311690 TCGTTTATCATGAAGCGTATTGTGAA 59.688 34.615 0.00 0.00 34.96 3.18
3578 7506 6.966021 AGCGTATTGTGAATTTAGTTGTGTT 58.034 32.000 0.00 0.00 0.00 3.32
3608 7536 7.008266 GGTTACGTGAACATTATTGATGCTTTG 59.992 37.037 0.00 0.00 40.09 2.77
3609 7537 6.252967 ACGTGAACATTATTGATGCTTTGA 57.747 33.333 0.00 0.00 39.47 2.69
3639 7569 9.865321 ATATTCAATCATTTGTTTTCTGTGGAG 57.135 29.630 0.00 0.00 34.32 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 3961 5.568023 CGAATCCTAGGTGTTCCACTTAACA 60.568 44.000 9.08 0.00 37.03 2.41
121 4001 4.349930 AGGAGCCACTTGTTAAAGGTAAGA 59.650 41.667 0.00 0.00 37.76 2.10
124 4004 5.829062 TTAGGAGCCACTTGTTAAAGGTA 57.171 39.130 0.00 0.00 37.76 3.08
152 4032 9.368674 CATTATGATGTTCAGTGATCTAGATCC 57.631 37.037 26.33 18.26 37.02 3.36
165 4045 8.916062 AGCATTTAATGACCATTATGATGTTCA 58.084 29.630 9.36 0.14 38.77 3.18
198 4078 3.247648 GTCGCAAAGTCAAGCACTTAGAA 59.752 43.478 0.00 0.00 45.32 2.10
239 4119 8.329203 ACCTTCATTATCTTGAGAACTTGTTC 57.671 34.615 5.44 5.44 0.00 3.18
316 4203 3.142951 CGTTTGGAATGGTTACTGTCCA 58.857 45.455 0.00 0.00 38.39 4.02
322 4209 7.309920 ACAAATATGACGTTTGGAATGGTTAC 58.690 34.615 0.00 0.00 40.08 2.50
360 4247 5.697633 CCAATATTGCAATGTAATCCAAGGC 59.302 40.000 22.27 0.00 0.00 4.35
559 4446 1.243342 CCTTCATTGGTTGCCTCGCA 61.243 55.000 0.00 0.00 36.47 5.10
692 4579 4.098349 TGGAATAATGGTACTAACGCTCGT 59.902 41.667 0.00 0.00 0.00 4.18
796 4684 3.990092 TGACATGTGAACTTTACGCTCT 58.010 40.909 1.15 0.00 0.00 4.09
831 4719 9.449719 GACATGAGACCTCCTTAGAAAATTTTA 57.550 33.333 2.75 0.00 0.00 1.52
848 4737 7.055667 TCAATCTATACCTTGGACATGAGAC 57.944 40.000 0.00 0.00 0.00 3.36
919 4808 0.605319 TGTGTGGACGAATGAAGGGC 60.605 55.000 0.00 0.00 0.00 5.19
950 4839 5.867903 AAATGCAGATGAGCTAGTAGAGT 57.132 39.130 0.00 0.00 34.99 3.24
969 4858 2.307686 TGCTAAGGACGGGGAGAAAAAT 59.692 45.455 0.00 0.00 0.00 1.82
979 4868 3.442996 CAGGAAGTGCTAAGGACGG 57.557 57.895 0.00 0.00 0.00 4.79
1317 5206 5.042463 TGTTTTGAGAGATGTACCAACCA 57.958 39.130 0.00 0.00 0.00 3.67
1598 5487 0.040425 GGTCGTTGCTTGCATCGTTT 60.040 50.000 20.53 0.00 0.00 3.60
1604 5493 1.653667 CATGTGGTCGTTGCTTGCA 59.346 52.632 0.00 0.00 0.00 4.08
1614 5503 5.978919 CCAATTAATATGTGTGCATGTGGTC 59.021 40.000 0.00 0.00 36.58 4.02
1622 5511 5.516339 GTGTCTTGCCAATTAATATGTGTGC 59.484 40.000 0.00 0.00 0.00 4.57
1639 5528 0.378257 GTGTGTGGCTGTGTGTCTTG 59.622 55.000 0.00 0.00 0.00 3.02
1651 5569 2.210116 GTGTCTTACCAGTGTGTGTGG 58.790 52.381 0.00 0.00 41.30 4.17
1652 5570 1.858458 CGTGTCTTACCAGTGTGTGTG 59.142 52.381 0.00 0.00 0.00 3.82
1653 5571 1.805120 GCGTGTCTTACCAGTGTGTGT 60.805 52.381 0.00 0.00 0.00 3.72
1654 5572 0.859232 GCGTGTCTTACCAGTGTGTG 59.141 55.000 0.00 0.00 0.00 3.82
1655 5573 0.462375 TGCGTGTCTTACCAGTGTGT 59.538 50.000 0.00 0.00 0.00 3.72
1656 5574 1.139989 CTGCGTGTCTTACCAGTGTG 58.860 55.000 0.00 0.00 0.00 3.82
1657 5575 0.600255 GCTGCGTGTCTTACCAGTGT 60.600 55.000 0.00 0.00 33.06 3.55
1658 5576 1.291877 GGCTGCGTGTCTTACCAGTG 61.292 60.000 0.00 0.00 33.06 3.66
1659 5577 1.004918 GGCTGCGTGTCTTACCAGT 60.005 57.895 0.00 0.00 33.06 4.00
1660 5578 1.005037 TGGCTGCGTGTCTTACCAG 60.005 57.895 0.00 0.00 33.41 4.00
1661 5579 1.301401 GTGGCTGCGTGTCTTACCA 60.301 57.895 0.00 0.00 0.00 3.25
1662 5580 1.301401 TGTGGCTGCGTGTCTTACC 60.301 57.895 0.00 0.00 0.00 2.85
1663 5581 0.878523 TGTGTGGCTGCGTGTCTTAC 60.879 55.000 0.00 0.00 0.00 2.34
1664 5582 0.878523 GTGTGTGGCTGCGTGTCTTA 60.879 55.000 0.00 0.00 0.00 2.10
1665 5583 2.180204 GTGTGTGGCTGCGTGTCTT 61.180 57.895 0.00 0.00 0.00 3.01
1666 5584 2.588877 GTGTGTGGCTGCGTGTCT 60.589 61.111 0.00 0.00 0.00 3.41
1667 5585 2.894879 TGTGTGTGGCTGCGTGTC 60.895 61.111 0.00 0.00 0.00 3.67
1668 5586 3.202001 GTGTGTGTGGCTGCGTGT 61.202 61.111 0.00 0.00 0.00 4.49
1669 5587 3.201297 TGTGTGTGTGGCTGCGTG 61.201 61.111 0.00 0.00 0.00 5.34
1670 5588 3.202001 GTGTGTGTGTGGCTGCGT 61.202 61.111 0.00 0.00 0.00 5.24
1671 5589 3.201297 TGTGTGTGTGTGGCTGCG 61.201 61.111 0.00 0.00 0.00 5.18
1672 5590 1.727511 ATGTGTGTGTGTGTGGCTGC 61.728 55.000 0.00 0.00 0.00 5.25
1673 5591 0.740149 AATGTGTGTGTGTGTGGCTG 59.260 50.000 0.00 0.00 0.00 4.85
1674 5592 0.740149 CAATGTGTGTGTGTGTGGCT 59.260 50.000 0.00 0.00 0.00 4.75
1675 5593 0.455410 ACAATGTGTGTGTGTGTGGC 59.545 50.000 0.00 0.00 39.72 5.01
1692 5610 2.289382 ACGATTGTAGTGGATGTGCACA 60.289 45.455 24.08 24.08 0.00 4.57
1707 5625 3.454042 TCGCAACATTTCTCACGATTG 57.546 42.857 0.00 0.00 0.00 2.67
1712 5630 3.332761 TGTGTTCGCAACATTTCTCAC 57.667 42.857 5.26 0.00 44.35 3.51
1850 5768 7.170965 AGTATTATTTAGATGCATGGAGGTGG 58.829 38.462 2.46 0.00 0.00 4.61
1951 5869 7.088589 ACAATCATCAAACTTACTATGTGCC 57.911 36.000 0.00 0.00 0.00 5.01
2000 5918 5.928264 GGAGGGCATATCAAATATTGCAAAC 59.072 40.000 1.71 0.00 0.00 2.93
2002 5920 5.146298 TGGAGGGCATATCAAATATTGCAA 58.854 37.500 0.00 0.00 0.00 4.08
2005 5923 6.434965 TCACATGGAGGGCATATCAAATATTG 59.565 38.462 0.00 0.00 0.00 1.90
2066 5985 4.202461 TGTCCCTCACTTTGCTCAGTTAAT 60.202 41.667 0.00 0.00 0.00 1.40
2097 6016 6.347061 AAATTCTCCAGTCCCTCCAATAAT 57.653 37.500 0.00 0.00 0.00 1.28
2408 6327 7.292292 TGATTACACCAAATTCTTTAACGACG 58.708 34.615 0.00 0.00 0.00 5.12
2436 6355 4.455877 ACTCGCGATCCAAGAAAAATCTTT 59.544 37.500 10.36 0.00 0.00 2.52
2455 6374 7.116948 ACACTTTCTTCTATGAAATGTGACTCG 59.883 37.037 17.46 0.00 37.83 4.18
2597 6518 5.698545 AGACTGAGTCTGCATAAAGTGAAAC 59.301 40.000 15.39 0.00 41.76 2.78
2624 6545 3.125316 CAATTTTGCAAGAGGTGGTGTG 58.875 45.455 0.00 0.00 0.00 3.82
2698 6619 7.201679 CCTCTCATTGAGTAAACCATCATTGAC 60.202 40.741 13.23 0.00 41.11 3.18
2708 6629 2.673368 CACGGCCTCTCATTGAGTAAAC 59.327 50.000 13.23 2.62 41.11 2.01
2752 6673 7.295322 TCAAACCCACACATTGATTGAAATA 57.705 32.000 0.00 0.00 0.00 1.40
2764 6685 1.480312 CCCATCCTTCAAACCCACACA 60.480 52.381 0.00 0.00 0.00 3.72
2841 6762 2.783135 AGGTAGCTCCAAACACACATG 58.217 47.619 0.00 0.00 39.02 3.21
2919 6840 9.777297 TTGCAGATTATCAGCACATAGTAATTA 57.223 29.630 11.74 0.00 38.63 1.40
2980 6904 8.869897 AGTTCGATAGTTGTAACATGTGTTATG 58.130 33.333 0.00 0.00 38.96 1.90
2993 6917 8.470805 ACTCATATCAAGAAGTTCGATAGTTGT 58.529 33.333 0.00 0.00 37.40 3.32
3086 7011 4.821805 GTCCATATGTGACGGAATTCCATT 59.178 41.667 24.09 10.27 35.14 3.16
3096 7022 3.334691 ACCAAGTTGTCCATATGTGACG 58.665 45.455 15.29 6.52 35.46 4.35
3110 7036 3.370953 CCTGGCTCTAGCATAACCAAGTT 60.371 47.826 4.07 0.00 44.36 2.66
3115 7041 2.300437 CCTACCTGGCTCTAGCATAACC 59.700 54.545 4.07 0.00 44.36 2.85
3135 7061 4.843728 TCATGGTATGAAGGTTTCTCACC 58.156 43.478 0.00 5.83 39.15 4.02
3246 7172 8.672815 GGAAAAATCATTCAAAAACAAAGTCCA 58.327 29.630 0.00 0.00 0.00 4.02
3474 7401 3.749609 GCGGCCCGACAGTATAATAAAAT 59.250 43.478 7.68 0.00 0.00 1.82
3485 7412 3.814615 ATGCTATGCGGCCCGACAG 62.815 63.158 7.68 0.22 0.00 3.51
3490 7417 1.066257 CAACAATGCTATGCGGCCC 59.934 57.895 0.00 0.00 0.00 5.80
3566 7494 6.093771 TCACGTAACCAACAACACAACTAAAT 59.906 34.615 0.00 0.00 0.00 1.40
3578 7506 6.862711 TCAATAATGTTCACGTAACCAACA 57.137 33.333 0.00 0.00 37.27 3.33
3620 7550 3.259123 GGCCTCCACAGAAAACAAATGAT 59.741 43.478 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.