AutoCloner

Multiple sequence alignment - TraesCS7D01G114800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G114800	chr7D	100.000	3503	0	0	1	3503	70154891	70151389	0.000000e+00	6469.0
1	TraesCS7D01G114800	chr7D	98.801	3337	29	2	1	3337	70047426	70050751	0.000000e+00	5930.0
2	TraesCS7D01G114800	chr7D	91.727	2067	115	20	623	2658	69953926	69955967	0.000000e+00	2819.0
3	TraesCS7D01G114800	chr7D	93.459	1269	46	10	886	2148	70736793	70735556	0.000000e+00	1849.0
4	TraesCS7D01G114800	chr7D	92.570	969	40	14	2177	3113	70735561	70734593	0.000000e+00	1362.0
5	TraesCS7D01G114800	chr7D	89.008	373	23	7	715	1081	70361728	70362088	2.480000e-121	446.0
6	TraesCS7D01G114800	chr7D	94.071	253	14	1	3086	3337	70729530	70729278	1.970000e-102	383.0
7	TraesCS7D01G114800	chr7D	82.688	439	64	4	1	430	70737543	70737108	2.550000e-101	379.0
8	TraesCS7D01G114800	chr7D	82.895	380	49	9	1	372	69952278	69952649	9.380000e-86	327.0
9	TraesCS7D01G114800	chr7D	96.571	175	6	0	3022	3196	70362324	70362498	1.230000e-74	291.0
10	TraesCS7D01G114800	chr7D	80.153	393	50	12	1	385	70040520	70040892	5.760000e-68	268.0
11	TraesCS7D01G114800	chr7D	94.152	171	10	0	1846	2016	70362284	70362114	9.640000e-66	261.0
12	TraesCS7D01G114800	chr7D	86.555	238	16	11	576	809	70737047	70736822	7.510000e-62	248.0
13	TraesCS7D01G114800	chr7D	84.466	103	8	5	25	120	42551664	42551563	1.040000e-15	95.3
14	TraesCS7D01G114800	chr7B	93.910	2660	121	15	1	2658	12720263	12717643	0.000000e+00	3976.0
15	TraesCS7D01G114800	chr7B	91.548	1964	126	17	718	2658	12951767	12953713	0.000000e+00	2671.0
16	TraesCS7D01G114800	chr7B	82.705	769	39	32	535	1247	12716053	12716783	6.470000e-167	597.0
17	TraesCS7D01G114800	chr7B	84.739	249	24	5	1	242	12715653	12715894	1.630000e-58	237.0
18	TraesCS7D01G114800	chr7B	87.640	178	22	0	273	450	634772090	634772267	1.270000e-49	207.0
19	TraesCS7D01G114800	chr7B	74.654	434	77	19	1	424	12950909	12951319	1.010000e-35	161.0
20	TraesCS7D01G114800	chr7A	93.239	1065	52	4	2151	3196	76550199	76551262	0.000000e+00	1550.0
21	TraesCS7D01G114800	chr7A	83.386	632	81	11	1	620	76818468	76819087	6.560000e-157	564.0
22	TraesCS7D01G114800	chr7A	88.710	186	18	2	469	652	617915757	617915941	1.270000e-54	224.0
23	TraesCS7D01G114800	chr7A	89.844	128	8	4	476	601	76549679	76549803	3.620000e-35	159.0
24	TraesCS7D01G114800	chr7A	88.889	99	4	1	673	771	76819166	76819257	7.950000e-22	115.0
25	TraesCS7D01G114800	chr4A	77.941	408	46	23	269	670	304782102	304782471	7.620000e-52	215.0
26	TraesCS7D01G114800	chr4A	87.097	93	11	1	25	116	649434314	649434222	1.720000e-18	104.0
27	TraesCS7D01G114800	chr3B	88.462	182	15	2	470	651	243767563	243767738	7.620000e-52	215.0
28	TraesCS7D01G114800	chr3D	85.644	202	27	2	470	670	168492505	168492705	9.850000e-51	211.0
29	TraesCS7D01G114800	chr3A	85.784	204	24	5	470	670	199149601	199149400	9.850000e-51	211.0
30	TraesCS7D01G114800	chr5B	87.363	182	23	0	269	450	580437567	580437748	3.540000e-50	209.0
31	TraesCS7D01G114800	chr6A	86.813	182	24	0	269	450	201453009	201453190	1.650000e-48	204.0
32	TraesCS7D01G114800	chr6A	90.323	93	6	3	579	669	610480622	610480531	6.140000e-23	119.0
33	TraesCS7D01G114800	chr6A	87.500	64	5	3	22	83	496018473	496018535	1.740000e-08	71.3
34	TraesCS7D01G114800	chr4B	86.243	189	24	2	269	455	455976795	455976607	1.650000e-48	204.0
35	TraesCS7D01G114800	chr4B	86.813	182	24	0	269	450	529837134	529837315	1.650000e-48	204.0
36	TraesCS7D01G114800	chr1B	86.813	182	24	0	269	450	524162274	524162455	1.650000e-48	204.0
37	TraesCS7D01G114800	chr1B	86.607	112	11	3	1	108	616595129	616595240	1.710000e-23	121.0
38	TraesCS7D01G114800	chr1B	91.111	45	4	0	3347	3391	233699206	233699162	1.050000e-05	62.1
39	TraesCS7D01G114800	chr1D	100.000	31	0	0	3347	3377	77370135	77370165	1.360000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G114800	chr7D	70151389	70154891	3502	True	6469.0	6469	100.0000	1	3503	1	chr7D.!!$R2	3502
1	TraesCS7D01G114800	chr7D	70047426	70050751	3325	False	5930.0	5930	98.8010	1	3337	1	chr7D.!!$F2	3336
2	TraesCS7D01G114800	chr7D	69952278	69955967	3689	False	1573.0	2819	87.3110	1	2658	2	chr7D.!!$F3	2657
3	TraesCS7D01G114800	chr7D	70734593	70737543	2950	True	959.5	1849	88.8180	1	3113	4	chr7D.!!$R5	3112
4	TraesCS7D01G114800	chr7D	70361728	70362498	770	False	368.5	446	92.7895	715	3196	2	chr7D.!!$F4	2481
5	TraesCS7D01G114800	chr7B	12717643	12720263	2620	True	3976.0	3976	93.9100	1	2658	1	chr7B.!!$R1	2657
6	TraesCS7D01G114800	chr7B	12950909	12953713	2804	False	1416.0	2671	83.1010	1	2658	2	chr7B.!!$F3	2657
7	TraesCS7D01G114800	chr7B	12715653	12716783	1130	False	417.0	597	83.7220	1	1247	2	chr7B.!!$F2	1246
8	TraesCS7D01G114800	chr7A	76549679	76551262	1583	False	854.5	1550	91.5415	476	3196	2	chr7A.!!$F2	2720
9	TraesCS7D01G114800	chr7A	76818468	76819257	789	False	339.5	564	86.1375	1	771	2	chr7A.!!$F3	770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
271	284	0.109342	ATCCCCTCCTATGCAAAGCG	59.891	55.000	0.00	0.0	0.0	4.68	F
694	2187	1.549620	TCCGGCGTGTGGATTAAAGTA	59.450	47.619	6.01	0.0	0.0	2.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1748	3311	0.915364	ATCTTCCTTGAGCCACCCTC	59.085	55.0	0.0	0.0	41.15	4.30	R
3056	4675	5.763204	TCTTTAGATTGTGTTGAGGTTGGAC	59.237	40.0	0.0	0.0	0.00	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
198	210	1.300620	CGCCCGACTCTGTTTGTGA	60.301	57.895	0.00	0.00	0.00	3.58
271	284	0.109342	ATCCCCTCCTATGCAAAGCG	59.891	55.000	0.00	0.00	0.00	4.68
694	2187	1.549620	TCCGGCGTGTGGATTAAAGTA	59.450	47.619	6.01	0.00	0.00	2.24
1746	3309	2.442188	GGCTTTACGCGACAGTCGG	61.442	63.158	24.13	15.97	40.84	4.79
1748	3311	2.774951	CTTTACGCGACAGTCGGCG	61.775	63.158	27.10	27.10	40.84	6.46
3080	4699	5.763204	GTCCAACCTCAACACAATCTAAAGA	59.237	40.000	0.00	0.00	0.00	2.52
3119	4738	6.939730	TGAAGAGCTGTTGTATTTTACCATGA	59.060	34.615	0.00	0.00	0.00	3.07
3196	4815	6.095377	GGTGCTAAAGGAAAAATGTGATGAG	58.905	40.000	0.00	0.00	0.00	2.90
3197	4816	6.071952	GGTGCTAAAGGAAAAATGTGATGAGA	60.072	38.462	0.00	0.00	0.00	3.27
3198	4817	7.025963	GTGCTAAAGGAAAAATGTGATGAGAG	58.974	38.462	0.00	0.00	0.00	3.20
3278	4897	4.520111	TGGAAAAATGTGATGTGAGGAGTG	59.480	41.667	0.00	0.00	0.00	3.51
3296	4915	5.416952	AGGAGTGCATATCTTTTGTTGGAAG	59.583	40.000	0.00	0.00	0.00	3.46
3337	4956	3.951775	TGCGAAAATATGCCCTTGTTT	57.048	38.095	0.00	0.00	0.00	2.83
3338	4957	5.047660	ACTTGCGAAAATATGCCCTTGTTTA	60.048	36.000	0.00	0.00	0.00	2.01
3339	4958	5.590530	TGCGAAAATATGCCCTTGTTTAT	57.409	34.783	0.00	0.00	0.00	1.40
3340	4959	5.347342	TGCGAAAATATGCCCTTGTTTATG	58.653	37.500	0.00	0.00	0.00	1.90
3341	4960	5.126222	TGCGAAAATATGCCCTTGTTTATGA	59.874	36.000	0.00	0.00	0.00	2.15
3342	4961	6.039616	GCGAAAATATGCCCTTGTTTATGAA	58.960	36.000	0.00	0.00	0.00	2.57
3343	4962	6.701400	GCGAAAATATGCCCTTGTTTATGAAT	59.299	34.615	0.00	0.00	0.00	2.57
3344	4963	7.306749	GCGAAAATATGCCCTTGTTTATGAATG	60.307	37.037	0.00	0.00	0.00	2.67
3345	4964	7.920151	CGAAAATATGCCCTTGTTTATGAATGA	59.080	33.333	0.00	0.00	0.00	2.57
3346	4965	9.598517	GAAAATATGCCCTTGTTTATGAATGAA	57.401	29.630	0.00	0.00	0.00	2.57
3347	4966	8.947055	AAATATGCCCTTGTTTATGAATGAAC	57.053	30.769	0.00	0.00	0.00	3.18
3348	4967	7.902920	ATATGCCCTTGTTTATGAATGAACT	57.097	32.000	0.46	0.00	0.00	3.01
3349	4968	8.995027	ATATGCCCTTGTTTATGAATGAACTA	57.005	30.769	0.46	0.00	0.00	2.24
3350	4969	6.757897	TGCCCTTGTTTATGAATGAACTAG	57.242	37.500	3.52	3.52	32.13	2.57
3351	4970	5.125417	TGCCCTTGTTTATGAATGAACTAGC	59.875	40.000	4.60	0.00	31.41	3.42
3352	4971	5.125417	GCCCTTGTTTATGAATGAACTAGCA	59.875	40.000	4.60	0.00	31.41	3.49
3353	4972	6.350110	GCCCTTGTTTATGAATGAACTAGCAA	60.350	38.462	4.60	0.00	31.41	3.91
3354	4973	7.601856	CCCTTGTTTATGAATGAACTAGCAAA	58.398	34.615	4.60	0.00	31.41	3.68
3355	4974	8.253113	CCCTTGTTTATGAATGAACTAGCAAAT	58.747	33.333	4.60	0.00	31.41	2.32
3370	4989	2.525750	CAAATATGCTCGTGCGTTGT	57.474	45.000	9.76	0.00	43.34	3.32
3371	4990	3.649870	CAAATATGCTCGTGCGTTGTA	57.350	42.857	9.76	0.00	43.34	2.41
3372	4991	3.997276	CAAATATGCTCGTGCGTTGTAA	58.003	40.909	9.76	0.00	43.34	2.41
3373	4992	3.651562	AATATGCTCGTGCGTTGTAAC	57.348	42.857	9.76	0.00	43.34	2.50
3416	5035	9.729281	ACATTGCCATTTATTTTCTTTCTTCAT	57.271	25.926	0.00	0.00	0.00	2.57
3428	5047	7.921786	TTTCTTTCTTCATATTGTCGATGGT	57.078	32.000	0.00	0.00	0.00	3.55
3429	5048	6.908870	TCTTTCTTCATATTGTCGATGGTG	57.091	37.500	0.00	0.00	0.00	4.17
3430	5049	5.817296	TCTTTCTTCATATTGTCGATGGTGG	59.183	40.000	0.00	0.00	0.00	4.61
3431	5050	3.466836	TCTTCATATTGTCGATGGTGGC	58.533	45.455	0.00	0.00	0.00	5.01
3432	5051	2.254546	TCATATTGTCGATGGTGGCC	57.745	50.000	0.00	0.00	0.00	5.36
3433	5052	1.488393	TCATATTGTCGATGGTGGCCA	59.512	47.619	0.00	0.00	38.19	5.36
3435	5054	3.326297	TCATATTGTCGATGGTGGCCATA	59.674	43.478	9.72	0.77	45.26	2.74
3436	5055	2.957402	ATTGTCGATGGTGGCCATAT	57.043	45.000	9.72	6.99	45.26	1.78
3437	5056	2.254546	TTGTCGATGGTGGCCATATC	57.745	50.000	9.72	15.46	45.26	1.63
3438	5057	0.396435	TGTCGATGGTGGCCATATCC	59.604	55.000	20.82	14.02	45.26	2.59
3439	5058	0.396435	GTCGATGGTGGCCATATCCA	59.604	55.000	15.44	15.44	45.26	3.41
3447	5066	2.957402	TGGCCATATCCACTTGATCC	57.043	50.000	0.00	0.00	34.76	3.36
3448	5067	1.425066	TGGCCATATCCACTTGATCCC	59.575	52.381	0.00	0.00	34.76	3.85
3449	5068	1.425066	GGCCATATCCACTTGATCCCA	59.575	52.381	0.00	0.00	34.76	4.37
3450	5069	2.158475	GGCCATATCCACTTGATCCCAA	60.158	50.000	0.00	0.00	34.76	4.12
3451	5070	2.887152	GCCATATCCACTTGATCCCAAC	59.113	50.000	0.00	0.00	34.76	3.77
3452	5071	3.141398	CCATATCCACTTGATCCCAACG	58.859	50.000	0.00	0.00	34.76	4.10
3453	5072	2.325583	TATCCACTTGATCCCAACGC	57.674	50.000	0.00	0.00	34.76	4.84
3454	5073	0.327924	ATCCACTTGATCCCAACGCA	59.672	50.000	0.00	0.00	0.00	5.24
3455	5074	0.327924	TCCACTTGATCCCAACGCAT	59.672	50.000	0.00	0.00	0.00	4.73
3456	5075	0.734889	CCACTTGATCCCAACGCATC	59.265	55.000	0.00	0.00	0.00	3.91
3457	5076	0.734889	CACTTGATCCCAACGCATCC	59.265	55.000	0.00	0.00	0.00	3.51
3458	5077	0.744414	ACTTGATCCCAACGCATCCG	60.744	55.000	0.00	0.00	41.14	4.18
3459	5078	0.461870	CTTGATCCCAACGCATCCGA	60.462	55.000	0.00	0.00	38.29	4.55
3460	5079	0.461870	TTGATCCCAACGCATCCGAG	60.462	55.000	0.00	0.00	38.29	4.63
3461	5080	2.203070	ATCCCAACGCATCCGAGC	60.203	61.111	0.00	0.00	38.29	5.03
3469	5088	2.434185	GCATCCGAGCGTGGTCAA	60.434	61.111	0.00	0.00	0.00	3.18
3470	5089	2.740714	GCATCCGAGCGTGGTCAAC	61.741	63.158	0.00	0.00	0.00	3.18
3471	5090	1.374125	CATCCGAGCGTGGTCAACA	60.374	57.895	0.00	0.00	0.00	3.33
3472	5091	1.374252	ATCCGAGCGTGGTCAACAC	60.374	57.895	0.00	0.00	46.78	3.32
3482	5101	3.773117	GGTCAACACCAAAGCGATG	57.227	52.632	0.00	0.00	43.17	3.84
3483	5102	1.234821	GGTCAACACCAAAGCGATGA	58.765	50.000	0.00	0.00	43.17	2.92
3484	5103	1.197721	GGTCAACACCAAAGCGATGAG	59.802	52.381	0.00	0.00	43.17	2.90
3485	5104	1.873591	GTCAACACCAAAGCGATGAGT	59.126	47.619	0.00	0.00	0.00	3.41
3486	5105	2.290641	GTCAACACCAAAGCGATGAGTT	59.709	45.455	0.00	0.00	0.00	3.01
3487	5106	2.548057	TCAACACCAAAGCGATGAGTTC	59.452	45.455	0.00	0.00	0.00	3.01
3488	5107	2.254546	ACACCAAAGCGATGAGTTCA	57.745	45.000	0.00	0.00	0.00	3.18
3489	5108	2.571212	ACACCAAAGCGATGAGTTCAA	58.429	42.857	0.00	0.00	0.00	2.69
3490	5109	2.290641	ACACCAAAGCGATGAGTTCAAC	59.709	45.455	0.00	0.00	0.00	3.18
3491	5110	1.880027	ACCAAAGCGATGAGTTCAACC	59.120	47.619	0.00	0.00	0.00	3.77
3492	5111	1.879380	CCAAAGCGATGAGTTCAACCA	59.121	47.619	0.00	0.00	0.00	3.67
3493	5112	2.489329	CCAAAGCGATGAGTTCAACCAT	59.511	45.455	0.00	0.00	0.00	3.55
3494	5113	3.426695	CCAAAGCGATGAGTTCAACCATC	60.427	47.826	8.29	8.29	36.67	3.51
3499	5118	3.329743	GATGAGTTCAACCATCGCATG	57.670	47.619	3.99	0.00	31.20	4.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
374	387	4.722700	GCACGGCCCCAGACATGT	62.723	66.667	0.00	0.00	0.00	3.21
1746	3309	3.254024	TTCCTTGAGCCACCCTCGC	62.254	63.158	0.00	0.00	43.82	5.03
1748	3311	0.915364	ATCTTCCTTGAGCCACCCTC	59.085	55.000	0.00	0.00	41.15	4.30
3056	4675	5.763204	TCTTTAGATTGTGTTGAGGTTGGAC	59.237	40.000	0.00	0.00	0.00	4.02
3080	4699	3.008330	GCTCTTCATGAGAACAGCACAT	58.992	45.455	10.68	0.00	42.97	3.21
3119	4738	9.162764	CAGGTTACAACATAAATAGCTACTGTT	57.837	33.333	0.00	1.38	0.00	3.16
3196	4815	1.226746	CCAACGGACACAACTTCCTC	58.773	55.000	0.00	0.00	0.00	3.71
3197	4816	0.544697	ACCAACGGACACAACTTCCT	59.455	50.000	0.00	0.00	0.00	3.36
3198	4817	2.243602	TACCAACGGACACAACTTCC	57.756	50.000	0.00	0.00	0.00	3.46
3278	4897	9.860898	AGATAAAACTTCCAACAAAAGATATGC	57.139	29.630	0.00	0.00	0.00	3.14
3317	4936	3.951775	AAACAAGGGCATATTTTCGCA	57.048	38.095	0.00	0.00	0.00	5.10
3320	4939	9.598517	TTCATTCATAAACAAGGGCATATTTTC	57.401	29.630	0.00	0.00	0.00	2.29
3351	4970	2.525750	ACAACGCACGAGCATATTTG	57.474	45.000	5.50	4.99	42.27	2.32
3352	4971	3.482923	CGTTACAACGCACGAGCATATTT	60.483	43.478	5.50	0.00	46.06	1.40
3353	4972	2.028763	CGTTACAACGCACGAGCATATT	59.971	45.455	5.50	0.00	46.06	1.28
3354	4973	1.586578	CGTTACAACGCACGAGCATAT	59.413	47.619	5.50	0.00	46.06	1.78
3355	4974	0.986270	CGTTACAACGCACGAGCATA	59.014	50.000	5.50	0.00	46.06	3.14
3356	4975	1.779061	CGTTACAACGCACGAGCAT	59.221	52.632	5.50	0.00	46.06	3.79
3357	4976	3.226712	CGTTACAACGCACGAGCA	58.773	55.556	5.50	0.00	46.06	4.26
3390	5009	9.729281	ATGAAGAAAGAAAATAAATGGCAATGT	57.271	25.926	0.00	0.00	0.00	2.71
3402	5021	8.960591	ACCATCGACAATATGAAGAAAGAAAAT	58.039	29.630	0.00	0.00	0.00	1.82
3403	5022	8.236586	CACCATCGACAATATGAAGAAAGAAAA	58.763	33.333	0.00	0.00	0.00	2.29
3404	5023	7.148255	CCACCATCGACAATATGAAGAAAGAAA	60.148	37.037	0.00	0.00	0.00	2.52
3405	5024	6.316140	CCACCATCGACAATATGAAGAAAGAA	59.684	38.462	0.00	0.00	0.00	2.52
3406	5025	5.817296	CCACCATCGACAATATGAAGAAAGA	59.183	40.000	0.00	0.00	0.00	2.52
3407	5026	5.504665	GCCACCATCGACAATATGAAGAAAG	60.505	44.000	0.00	0.00	0.00	2.62
3408	5027	4.335315	GCCACCATCGACAATATGAAGAAA	59.665	41.667	0.00	0.00	0.00	2.52
3409	5028	3.876914	GCCACCATCGACAATATGAAGAA	59.123	43.478	0.00	0.00	0.00	2.52
3410	5029	3.466836	GCCACCATCGACAATATGAAGA	58.533	45.455	0.00	0.00	0.00	2.87
3411	5030	2.549754	GGCCACCATCGACAATATGAAG	59.450	50.000	0.00	0.00	0.00	3.02
3412	5031	2.092699	TGGCCACCATCGACAATATGAA	60.093	45.455	0.00	0.00	0.00	2.57
3413	5032	1.488393	TGGCCACCATCGACAATATGA	59.512	47.619	0.00	0.00	0.00	2.15
3414	5033	1.965935	TGGCCACCATCGACAATATG	58.034	50.000	0.00	0.00	0.00	1.78
3415	5034	2.957402	ATGGCCACCATCGACAATAT	57.043	45.000	8.16	0.00	40.74	1.28
3416	5035	3.307410	GGATATGGCCACCATCGACAATA	60.307	47.826	8.16	0.00	40.74	1.90
3417	5036	2.553028	GGATATGGCCACCATCGACAAT	60.553	50.000	8.16	0.00	40.74	2.71
3418	5037	1.202758	GGATATGGCCACCATCGACAA	60.203	52.381	8.16	0.00	40.74	3.18
3419	5038	0.396435	GGATATGGCCACCATCGACA	59.604	55.000	8.16	0.00	40.74	4.35
3420	5039	0.396435	TGGATATGGCCACCATCGAC	59.604	55.000	8.16	3.11	40.74	4.20
3421	5040	2.847201	TGGATATGGCCACCATCGA	58.153	52.632	8.16	8.81	40.74	3.59
3428	5047	1.425066	GGGATCAAGTGGATATGGCCA	59.575	52.381	8.56	8.56	36.00	5.36
3429	5048	1.425066	TGGGATCAAGTGGATATGGCC	59.575	52.381	0.00	0.00	36.00	5.36
3430	5049	2.887152	GTTGGGATCAAGTGGATATGGC	59.113	50.000	0.00	0.00	36.00	4.40
3431	5050	3.141398	CGTTGGGATCAAGTGGATATGG	58.859	50.000	0.00	0.00	36.00	2.74
3432	5051	2.549754	GCGTTGGGATCAAGTGGATATG	59.450	50.000	0.00	0.00	36.00	1.78
3433	5052	2.172505	TGCGTTGGGATCAAGTGGATAT	59.827	45.455	0.00	0.00	36.00	1.63
3434	5053	1.557371	TGCGTTGGGATCAAGTGGATA	59.443	47.619	0.00	0.00	36.00	2.59
3435	5054	0.327924	TGCGTTGGGATCAAGTGGAT	59.672	50.000	0.00	0.00	39.53	3.41
3436	5055	0.327924	ATGCGTTGGGATCAAGTGGA	59.672	50.000	0.00	0.00	32.92	4.02
3437	5056	0.734889	GATGCGTTGGGATCAAGTGG	59.265	55.000	0.00	0.00	40.42	4.00
3438	5057	0.734889	GGATGCGTTGGGATCAAGTG	59.265	55.000	0.00	0.00	42.30	3.16
3439	5058	0.744414	CGGATGCGTTGGGATCAAGT	60.744	55.000	0.00	0.00	42.30	3.16
3440	5059	0.461870	TCGGATGCGTTGGGATCAAG	60.462	55.000	6.49	0.00	42.30	3.02
3441	5060	0.461870	CTCGGATGCGTTGGGATCAA	60.462	55.000	6.49	0.00	42.30	2.57
3442	5061	1.143838	CTCGGATGCGTTGGGATCA	59.856	57.895	6.49	0.00	42.30	2.92
3443	5062	2.247437	GCTCGGATGCGTTGGGATC	61.247	63.158	6.49	0.00	40.02	3.36
3444	5063	2.203070	GCTCGGATGCGTTGGGAT	60.203	61.111	6.49	0.00	0.00	3.85
3452	5071	2.434185	TTGACCACGCTCGGATGC	60.434	61.111	0.00	0.00	0.00	3.91
3453	5072	1.374125	TGTTGACCACGCTCGGATG	60.374	57.895	0.00	0.00	0.00	3.51
3454	5073	1.374252	GTGTTGACCACGCTCGGAT	60.374	57.895	0.00	0.00	33.61	4.18
3455	5074	2.028484	GTGTTGACCACGCTCGGA	59.972	61.111	0.00	0.00	33.61	4.55
3456	5075	3.041940	GGTGTTGACCACGCTCGG	61.042	66.667	0.00	0.00	45.52	4.63
3464	5083	1.197721	CTCATCGCTTTGGTGTTGACC	59.802	52.381	0.00	0.00	43.48	4.02
3465	5084	1.873591	ACTCATCGCTTTGGTGTTGAC	59.126	47.619	0.00	0.00	31.16	3.18
3466	5085	2.254546	ACTCATCGCTTTGGTGTTGA	57.745	45.000	0.00	0.00	32.77	3.18
3467	5086	2.290367	TGAACTCATCGCTTTGGTGTTG	59.710	45.455	0.00	0.00	0.00	3.33
3468	5087	2.571212	TGAACTCATCGCTTTGGTGTT	58.429	42.857	0.00	0.00	0.00	3.32
3469	5088	2.254546	TGAACTCATCGCTTTGGTGT	57.745	45.000	0.00	0.00	0.00	4.16
3470	5089	2.350772	GGTTGAACTCATCGCTTTGGTG	60.351	50.000	0.00	0.00	0.00	4.17
3471	5090	1.880027	GGTTGAACTCATCGCTTTGGT	59.120	47.619	0.00	0.00	0.00	3.67
3472	5091	1.879380	TGGTTGAACTCATCGCTTTGG	59.121	47.619	0.00	0.00	0.00	3.28
3473	5092	3.751621	GATGGTTGAACTCATCGCTTTG	58.248	45.455	9.79	0.00	31.83	2.77
3479	5098	2.032550	CCATGCGATGGTTGAACTCATC	59.967	50.000	13.38	13.38	45.54	2.92
3480	5099	2.019249	CCATGCGATGGTTGAACTCAT	58.981	47.619	6.93	0.00	45.54	2.90
3481	5100	1.452110	CCATGCGATGGTTGAACTCA	58.548	50.000	6.93	0.00	45.54	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.