Multiple sequence alignment - TraesCS7D01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G114700 chr7D 100.000 2468 0 0 1 2468 70132162 70129695 0.000000e+00 4558.0
1 TraesCS7D01G114700 chr2A 94.671 1126 41 13 424 1542 588998567 588997454 0.000000e+00 1729.0
2 TraesCS7D01G114700 chr2A 93.634 1131 56 8 415 1542 588678702 588677585 0.000000e+00 1676.0
3 TraesCS7D01G114700 chr2D 95.949 790 32 0 1679 2468 570405817 570406606 0.000000e+00 1282.0
4 TraesCS7D01G114700 chr2D 86.877 602 65 7 1879 2468 595936234 595935635 0.000000e+00 662.0
5 TraesCS7D01G114700 chr2D 82.594 293 44 5 1284 1576 595936926 595936641 4.070000e-63 252.0
6 TraesCS7D01G114700 chr2D 87.273 165 20 1 1266 1430 595937577 595937414 1.170000e-43 187.0
7 TraesCS7D01G114700 chr3A 87.827 764 65 15 574 1335 357838138 357837401 0.000000e+00 870.0
8 TraesCS7D01G114700 chr3A 85.854 615 77 3 1863 2468 675493410 675492797 0.000000e+00 645.0
9 TraesCS7D01G114700 chr3A 91.566 83 7 0 1086 1168 709213067 709213149 5.580000e-22 115.0
10 TraesCS7D01G114700 chr3A 91.566 83 7 0 1086 1168 715589799 715589717 5.580000e-22 115.0
11 TraesCS7D01G114700 chr1D 87.605 597 58 9 1879 2462 428219176 428219769 0.000000e+00 678.0
12 TraesCS7D01G114700 chr1D 88.667 150 9 8 420 563 100908055 100907908 2.520000e-40 176.0
13 TraesCS7D01G114700 chr5D 92.120 368 27 2 3 369 312480284 312479918 3.640000e-143 518.0
14 TraesCS7D01G114700 chr5D 90.984 366 33 0 3 368 483233680 483234045 6.130000e-136 494.0
15 TraesCS7D01G114700 chr5D 87.470 423 42 4 2055 2468 218771728 218771308 6.170000e-131 477.0
16 TraesCS7D01G114700 chr2B 92.350 366 21 2 557 921 415387075 415386716 4.710000e-142 514.0
17 TraesCS7D01G114700 chr7A 86.017 472 52 7 1879 2338 15681703 15682172 6.130000e-136 494.0
18 TraesCS7D01G114700 chr7A 89.402 368 39 0 3 370 92036939 92036572 4.810000e-127 464.0
19 TraesCS7D01G114700 chr7A 94.702 151 7 1 413 563 95902619 95902768 1.480000e-57 233.0
20 TraesCS7D01G114700 chr7A 91.026 156 12 2 413 568 95894318 95894471 2.490000e-50 209.0
21 TraesCS7D01G114700 chr7A 93.233 133 9 0 2330 2462 15684241 15684373 1.940000e-46 196.0
22 TraesCS7D01G114700 chr7A 83.648 159 21 5 413 569 483858548 483858703 7.110000e-31 145.0
23 TraesCS7D01G114700 chr7A 82.911 158 18 8 412 564 100884050 100884203 1.540000e-27 134.0
24 TraesCS7D01G114700 chr7A 91.566 83 7 0 1086 1168 66990934 66991016 5.580000e-22 115.0
25 TraesCS7D01G114700 chr7A 91.566 83 7 0 1086 1168 67286042 67286124 5.580000e-22 115.0
26 TraesCS7D01G114700 chr4A 89.891 366 37 0 3 368 513095101 513094736 2.870000e-129 472.0
27 TraesCS7D01G114700 chr4A 91.566 83 7 0 1086 1168 596082669 596082751 5.580000e-22 115.0
28 TraesCS7D01G114700 chr1B 89.130 368 40 0 3 370 319900634 319901001 2.240000e-125 459.0
29 TraesCS7D01G114700 chr1B 95.918 147 6 0 1760 1906 360517494 360517348 3.170000e-59 239.0
30 TraesCS7D01G114700 chr1B 94.558 147 8 0 1760 1906 12930831 12930685 6.870000e-56 228.0
31 TraesCS7D01G114700 chr1B 92.121 165 8 3 402 563 394033822 394033984 6.870000e-56 228.0
32 TraesCS7D01G114700 chr1B 93.333 135 9 0 557 691 12933542 12933408 1.500000e-47 200.0
33 TraesCS7D01G114700 chr3B 87.397 365 46 0 3 367 676607847 676607483 1.060000e-113 420.0
34 TraesCS7D01G114700 chr3B 83.475 236 36 2 1739 1972 519400843 519400609 1.490000e-52 217.0
35 TraesCS7D01G114700 chr1A 87.193 367 47 0 3 369 37490154 37490520 3.800000e-113 418.0
36 TraesCS7D01G114700 chr1A 85.479 365 53 0 3 367 403042301 403041937 4.980000e-102 381.0
37 TraesCS7D01G114700 chr5B 87.328 363 45 1 8 369 526729899 526730261 4.910000e-112 414.0
38 TraesCS7D01G114700 chr5B 94.558 147 8 0 1760 1906 398392327 398392181 6.870000e-56 228.0
39 TraesCS7D01G114700 chr4D 82.029 345 55 5 1237 1581 423250090 423249753 1.120000e-73 287.0
40 TraesCS7D01G114700 chr6B 95.238 147 7 0 1760 1906 78216264 78216118 1.480000e-57 233.0
41 TraesCS7D01G114700 chr4B 95.745 141 6 0 1760 1900 404452760 404452900 6.870000e-56 228.0
42 TraesCS7D01G114700 chr4B 95.238 126 6 0 557 682 404450672 404450797 1.500000e-47 200.0
43 TraesCS7D01G114700 chr4B 92.647 68 4 1 599 665 201797192 201797259 2.020000e-16 97.1
44 TraesCS7D01G114700 chr3D 86.577 149 12 7 426 568 71780399 71780545 9.140000e-35 158.0
45 TraesCS7D01G114700 chr7B 91.000 100 3 3 608 707 506617449 506617542 1.990000e-26 130.0
46 TraesCS7D01G114700 chr6A 91.566 83 7 0 1086 1168 37783392 37783474 5.580000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G114700 chr7D 70129695 70132162 2467 True 4558 4558 100.000000 1 2468 1 chr7D.!!$R1 2467
1 TraesCS7D01G114700 chr2A 588997454 588998567 1113 True 1729 1729 94.671000 424 1542 1 chr2A.!!$R2 1118
2 TraesCS7D01G114700 chr2A 588677585 588678702 1117 True 1676 1676 93.634000 415 1542 1 chr2A.!!$R1 1127
3 TraesCS7D01G114700 chr2D 570405817 570406606 789 False 1282 1282 95.949000 1679 2468 1 chr2D.!!$F1 789
4 TraesCS7D01G114700 chr2D 595935635 595937577 1942 True 367 662 85.581333 1266 2468 3 chr2D.!!$R1 1202
5 TraesCS7D01G114700 chr3A 357837401 357838138 737 True 870 870 87.827000 574 1335 1 chr3A.!!$R1 761
6 TraesCS7D01G114700 chr3A 675492797 675493410 613 True 645 645 85.854000 1863 2468 1 chr3A.!!$R2 605
7 TraesCS7D01G114700 chr1D 428219176 428219769 593 False 678 678 87.605000 1879 2462 1 chr1D.!!$F1 583
8 TraesCS7D01G114700 chr7A 15681703 15684373 2670 False 345 494 89.625000 1879 2462 2 chr7A.!!$F7 583
9 TraesCS7D01G114700 chr1B 12930685 12933542 2857 True 214 228 93.945500 557 1906 2 chr1B.!!$R2 1349
10 TraesCS7D01G114700 chr4B 404450672 404452900 2228 False 214 228 95.491500 557 1900 2 chr4B.!!$F2 1343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.031857 CTCTGAGCTACTGGCCGATG 59.968 60.0 0.00 0.0 43.05 3.84 F
100 101 0.179048 CTACTGGCCGATGCAATGGA 60.179 55.0 11.51 0.0 40.13 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 3281 1.318576 CGTTGGCTCCCTTTTGAACT 58.681 50.000 0.0 0.0 0.0 3.01 R
1666 5052 2.027625 CGACTTCCGCACCCTGAAC 61.028 63.158 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.872557 CAGTCAATGCACTGGCGG 59.127 61.111 0.00 0.00 45.35 6.13
19 20 1.968017 CAGTCAATGCACTGGCGGT 60.968 57.895 0.00 0.00 45.35 5.68
21 22 2.672651 TCAATGCACTGGCGGTGG 60.673 61.111 26.71 11.00 45.44 4.61
22 23 4.424566 CAATGCACTGGCGGTGGC 62.425 66.667 26.71 18.76 45.44 5.01
33 34 2.897846 CGGTGGCGGTGACAACAA 60.898 61.111 0.00 0.00 0.00 2.83
34 35 2.719354 GGTGGCGGTGACAACAAC 59.281 61.111 0.00 0.00 0.00 3.32
40 41 4.134623 GGTGACAACAACGGCTGA 57.865 55.556 0.00 0.00 0.00 4.26
41 42 2.629002 GGTGACAACAACGGCTGAT 58.371 52.632 0.00 0.00 0.00 2.90
42 43 1.803334 GGTGACAACAACGGCTGATA 58.197 50.000 0.00 0.00 0.00 2.15
43 44 2.356135 GGTGACAACAACGGCTGATAT 58.644 47.619 0.00 0.00 0.00 1.63
44 45 2.095853 GGTGACAACAACGGCTGATATG 59.904 50.000 0.00 0.00 0.00 1.78
45 46 2.095853 GTGACAACAACGGCTGATATGG 59.904 50.000 0.00 0.00 0.00 2.74
46 47 1.670811 GACAACAACGGCTGATATGGG 59.329 52.381 0.00 0.00 0.00 4.00
47 48 1.280710 ACAACAACGGCTGATATGGGA 59.719 47.619 0.00 0.00 0.00 4.37
48 49 1.942657 CAACAACGGCTGATATGGGAG 59.057 52.381 0.00 0.00 0.00 4.30
49 50 1.204146 ACAACGGCTGATATGGGAGT 58.796 50.000 0.00 0.00 0.00 3.85
50 51 1.559682 ACAACGGCTGATATGGGAGTT 59.440 47.619 0.00 0.00 0.00 3.01
51 52 1.942657 CAACGGCTGATATGGGAGTTG 59.057 52.381 0.00 0.00 32.92 3.16
52 53 1.204146 ACGGCTGATATGGGAGTTGT 58.796 50.000 0.00 0.00 0.00 3.32
53 54 1.139058 ACGGCTGATATGGGAGTTGTC 59.861 52.381 0.00 0.00 0.00 3.18
54 55 1.138859 CGGCTGATATGGGAGTTGTCA 59.861 52.381 0.00 0.00 0.00 3.58
55 56 2.804572 CGGCTGATATGGGAGTTGTCAG 60.805 54.545 0.00 0.00 39.35 3.51
56 57 2.486191 GGCTGATATGGGAGTTGTCAGG 60.486 54.545 0.00 0.00 37.39 3.86
57 58 2.486191 GCTGATATGGGAGTTGTCAGGG 60.486 54.545 0.00 0.00 37.39 4.45
58 59 2.774234 CTGATATGGGAGTTGTCAGGGT 59.226 50.000 0.00 0.00 34.21 4.34
59 60 2.771943 TGATATGGGAGTTGTCAGGGTC 59.228 50.000 0.00 0.00 0.00 4.46
60 61 2.642171 TATGGGAGTTGTCAGGGTCT 57.358 50.000 0.00 0.00 0.00 3.85
61 62 1.280457 ATGGGAGTTGTCAGGGTCTC 58.720 55.000 0.00 0.00 0.00 3.36
62 63 0.836400 TGGGAGTTGTCAGGGTCTCC 60.836 60.000 0.00 0.00 43.84 3.71
63 64 0.545548 GGGAGTTGTCAGGGTCTCCT 60.546 60.000 9.43 0.00 46.26 3.69
64 65 1.353091 GGAGTTGTCAGGGTCTCCTT 58.647 55.000 0.00 0.00 42.67 3.36
65 66 1.700186 GGAGTTGTCAGGGTCTCCTTT 59.300 52.381 0.00 0.00 42.67 3.11
66 67 2.551071 GGAGTTGTCAGGGTCTCCTTTG 60.551 54.545 0.00 0.00 42.67 2.77
67 68 2.368875 GAGTTGTCAGGGTCTCCTTTGA 59.631 50.000 0.00 0.00 42.67 2.69
68 69 2.370189 AGTTGTCAGGGTCTCCTTTGAG 59.630 50.000 0.00 0.00 42.67 3.02
69 70 2.368875 GTTGTCAGGGTCTCCTTTGAGA 59.631 50.000 0.00 0.00 45.39 3.27
77 78 2.588464 TCTCCTTTGAGACGGACTCT 57.412 50.000 8.81 0.00 42.73 3.24
78 79 2.163509 TCTCCTTTGAGACGGACTCTG 58.836 52.381 8.81 0.37 42.73 3.35
79 80 2.163509 CTCCTTTGAGACGGACTCTGA 58.836 52.381 8.81 0.83 45.13 3.27
80 81 2.163412 CTCCTTTGAGACGGACTCTGAG 59.837 54.545 2.45 2.45 45.13 3.35
81 82 1.403514 CCTTTGAGACGGACTCTGAGC 60.404 57.143 4.19 0.00 45.13 4.26
82 83 1.543802 CTTTGAGACGGACTCTGAGCT 59.456 52.381 4.19 0.00 45.13 4.09
83 84 2.491675 TTGAGACGGACTCTGAGCTA 57.508 50.000 4.19 0.00 45.13 3.32
84 85 1.740297 TGAGACGGACTCTGAGCTAC 58.260 55.000 4.19 0.00 45.13 3.58
85 86 1.279558 TGAGACGGACTCTGAGCTACT 59.720 52.381 4.19 0.00 45.13 2.57
86 87 1.668751 GAGACGGACTCTGAGCTACTG 59.331 57.143 4.19 4.70 41.94 2.74
87 88 0.736053 GACGGACTCTGAGCTACTGG 59.264 60.000 4.19 0.00 0.00 4.00
88 89 1.316706 ACGGACTCTGAGCTACTGGC 61.317 60.000 4.19 0.00 42.19 4.85
89 90 1.819905 GGACTCTGAGCTACTGGCC 59.180 63.158 4.19 0.00 43.05 5.36
90 91 1.435515 GACTCTGAGCTACTGGCCG 59.564 63.158 4.19 0.00 43.05 6.13
91 92 1.000771 ACTCTGAGCTACTGGCCGA 60.001 57.895 4.19 0.00 43.05 5.54
92 93 0.396417 ACTCTGAGCTACTGGCCGAT 60.396 55.000 4.19 0.00 43.05 4.18
93 94 0.031857 CTCTGAGCTACTGGCCGATG 59.968 60.000 0.00 0.00 43.05 3.84
94 95 1.593750 CTGAGCTACTGGCCGATGC 60.594 63.158 0.00 0.00 43.05 3.91
95 96 2.302199 CTGAGCTACTGGCCGATGCA 62.302 60.000 0.00 0.00 43.05 3.96
96 97 1.153369 GAGCTACTGGCCGATGCAA 60.153 57.895 0.00 0.00 43.05 4.08
97 98 0.533755 GAGCTACTGGCCGATGCAAT 60.534 55.000 0.00 0.00 43.05 3.56
98 99 0.816825 AGCTACTGGCCGATGCAATG 60.817 55.000 0.00 0.00 43.05 2.82
99 100 1.789078 GCTACTGGCCGATGCAATGG 61.789 60.000 0.00 3.29 40.13 3.16
100 101 0.179048 CTACTGGCCGATGCAATGGA 60.179 55.000 11.51 0.00 40.13 3.41
101 102 0.473755 TACTGGCCGATGCAATGGAT 59.526 50.000 11.51 0.00 40.13 3.41
102 103 1.105167 ACTGGCCGATGCAATGGATG 61.105 55.000 11.51 3.32 40.13 3.51
103 104 1.076850 TGGCCGATGCAATGGATGT 60.077 52.632 11.51 0.00 40.13 3.06
104 105 1.102809 TGGCCGATGCAATGGATGTC 61.103 55.000 11.51 0.00 40.13 3.06
105 106 1.656441 GCCGATGCAATGGATGTCC 59.344 57.895 11.51 0.00 37.47 4.02
106 107 1.102809 GCCGATGCAATGGATGTCCA 61.103 55.000 11.51 3.88 43.73 4.02
107 108 3.010734 GCCGATGCAATGGATGTCCAG 62.011 57.143 11.51 0.00 43.18 3.86
114 115 2.494445 TGGATGTCCAGCGCGTAG 59.506 61.111 8.43 0.00 42.01 3.51
115 116 2.049767 TGGATGTCCAGCGCGTAGA 61.050 57.895 8.43 0.00 42.01 2.59
116 117 1.364171 GGATGTCCAGCGCGTAGAT 59.636 57.895 8.43 0.00 35.64 1.98
117 118 0.249489 GGATGTCCAGCGCGTAGATT 60.249 55.000 8.43 0.00 35.64 2.40
118 119 1.132588 GATGTCCAGCGCGTAGATTC 58.867 55.000 8.43 0.74 0.00 2.52
119 120 0.747255 ATGTCCAGCGCGTAGATTCT 59.253 50.000 8.43 0.00 0.00 2.40
120 121 0.530744 TGTCCAGCGCGTAGATTCTT 59.469 50.000 8.43 0.00 0.00 2.52
121 122 1.201343 GTCCAGCGCGTAGATTCTTC 58.799 55.000 8.43 0.00 0.00 2.87
122 123 0.248498 TCCAGCGCGTAGATTCTTCG 60.248 55.000 8.43 8.19 0.00 3.79
123 124 1.555538 CAGCGCGTAGATTCTTCGC 59.444 57.895 22.92 22.92 44.47 4.70
124 125 1.589196 AGCGCGTAGATTCTTCGCC 60.589 57.895 25.48 19.32 44.94 5.54
125 126 1.876714 GCGCGTAGATTCTTCGCCA 60.877 57.895 25.48 0.00 44.94 5.69
126 127 1.215655 GCGCGTAGATTCTTCGCCAT 61.216 55.000 25.48 0.00 44.94 4.40
127 128 1.929038 GCGCGTAGATTCTTCGCCATA 60.929 52.381 25.48 0.00 44.94 2.74
128 129 2.596452 CGCGTAGATTCTTCGCCATAT 58.404 47.619 25.48 0.00 44.94 1.78
129 130 2.342651 CGCGTAGATTCTTCGCCATATG 59.657 50.000 25.48 11.93 44.94 1.78
130 131 2.092838 GCGTAGATTCTTCGCCATATGC 59.907 50.000 22.46 3.09 42.71 3.14
131 132 3.317150 CGTAGATTCTTCGCCATATGCA 58.683 45.455 0.00 0.00 41.33 3.96
132 133 3.366121 CGTAGATTCTTCGCCATATGCAG 59.634 47.826 0.00 0.00 41.33 4.41
133 134 2.149578 AGATTCTTCGCCATATGCAGC 58.850 47.619 0.00 0.00 41.33 5.25
134 135 1.875514 GATTCTTCGCCATATGCAGCA 59.124 47.619 0.00 0.00 41.33 4.41
135 136 1.748950 TTCTTCGCCATATGCAGCAA 58.251 45.000 0.00 0.00 41.33 3.91
136 137 1.971481 TCTTCGCCATATGCAGCAAT 58.029 45.000 0.00 0.00 41.33 3.56
137 138 1.875514 TCTTCGCCATATGCAGCAATC 59.124 47.619 0.00 0.00 41.33 2.67
138 139 0.587768 TTCGCCATATGCAGCAATCG 59.412 50.000 0.00 0.00 41.33 3.34
139 140 0.532640 TCGCCATATGCAGCAATCGT 60.533 50.000 0.00 0.00 41.33 3.73
140 141 0.308684 CGCCATATGCAGCAATCGTT 59.691 50.000 0.00 0.00 41.33 3.85
141 142 1.762419 GCCATATGCAGCAATCGTTG 58.238 50.000 0.00 0.00 40.77 4.10
142 143 1.334556 GCCATATGCAGCAATCGTTGA 59.665 47.619 0.00 0.00 40.77 3.18
143 144 2.223548 GCCATATGCAGCAATCGTTGAA 60.224 45.455 0.00 0.00 40.77 2.69
144 145 3.624900 CCATATGCAGCAATCGTTGAAG 58.375 45.455 0.00 0.00 0.00 3.02
145 146 3.313249 CCATATGCAGCAATCGTTGAAGA 59.687 43.478 0.00 0.00 0.00 2.87
146 147 4.023450 CCATATGCAGCAATCGTTGAAGAT 60.023 41.667 0.00 0.00 0.00 2.40
147 148 5.179929 CCATATGCAGCAATCGTTGAAGATA 59.820 40.000 0.00 0.00 0.00 1.98
148 149 4.542662 ATGCAGCAATCGTTGAAGATAC 57.457 40.909 0.00 0.00 0.00 2.24
149 150 3.333804 TGCAGCAATCGTTGAAGATACA 58.666 40.909 0.00 0.00 0.00 2.29
150 151 3.750652 TGCAGCAATCGTTGAAGATACAA 59.249 39.130 0.00 0.00 0.00 2.41
151 152 4.215185 TGCAGCAATCGTTGAAGATACAAA 59.785 37.500 0.00 0.00 0.00 2.83
152 153 4.790140 GCAGCAATCGTTGAAGATACAAAG 59.210 41.667 2.51 0.00 0.00 2.77
153 154 5.617751 GCAGCAATCGTTGAAGATACAAAGT 60.618 40.000 2.51 0.00 32.77 2.66
154 155 6.373779 CAGCAATCGTTGAAGATACAAAGTT 58.626 36.000 2.51 0.00 32.77 2.66
155 156 6.857964 CAGCAATCGTTGAAGATACAAAGTTT 59.142 34.615 2.51 0.00 32.77 2.66
156 157 7.059945 CAGCAATCGTTGAAGATACAAAGTTTC 59.940 37.037 2.51 0.00 32.77 2.78
157 158 6.855914 GCAATCGTTGAAGATACAAAGTTTCA 59.144 34.615 2.51 0.00 32.77 2.69
158 159 7.378461 GCAATCGTTGAAGATACAAAGTTTCAA 59.622 33.333 2.51 0.00 37.25 2.69
159 160 9.398170 CAATCGTTGAAGATACAAAGTTTCAAT 57.602 29.630 2.35 0.00 40.43 2.57
160 161 9.965824 AATCGTTGAAGATACAAAGTTTCAATT 57.034 25.926 2.35 0.00 40.43 2.32
191 192 5.784578 GGTTTTCCAAATGGAGTGTTAGT 57.215 39.130 1.86 0.00 46.36 2.24
192 193 5.528870 GGTTTTCCAAATGGAGTGTTAGTG 58.471 41.667 1.86 0.00 46.36 2.74
193 194 4.846779 TTTCCAAATGGAGTGTTAGTGC 57.153 40.909 1.86 0.00 46.36 4.40
194 195 2.422597 TCCAAATGGAGTGTTAGTGCG 58.577 47.619 0.00 0.00 39.78 5.34
195 196 2.151202 CCAAATGGAGTGTTAGTGCGT 58.849 47.619 0.00 0.00 37.39 5.24
196 197 2.095768 CCAAATGGAGTGTTAGTGCGTG 60.096 50.000 0.00 0.00 37.39 5.34
197 198 2.543777 AATGGAGTGTTAGTGCGTGT 57.456 45.000 0.00 0.00 0.00 4.49
198 199 3.671008 AATGGAGTGTTAGTGCGTGTA 57.329 42.857 0.00 0.00 0.00 2.90
199 200 2.717580 TGGAGTGTTAGTGCGTGTAG 57.282 50.000 0.00 0.00 0.00 2.74
200 201 2.232399 TGGAGTGTTAGTGCGTGTAGA 58.768 47.619 0.00 0.00 0.00 2.59
201 202 2.030540 TGGAGTGTTAGTGCGTGTAGAC 60.031 50.000 0.00 0.00 0.00 2.59
213 214 3.482722 CGTGTAGACGTACCATGAACT 57.517 47.619 3.89 0.00 40.91 3.01
214 215 3.423571 CGTGTAGACGTACCATGAACTC 58.576 50.000 3.89 0.00 40.91 3.01
215 216 3.126514 CGTGTAGACGTACCATGAACTCT 59.873 47.826 3.89 0.75 40.91 3.24
216 217 4.413087 GTGTAGACGTACCATGAACTCTG 58.587 47.826 0.00 0.00 0.00 3.35
217 218 4.077108 TGTAGACGTACCATGAACTCTGT 58.923 43.478 0.00 0.00 0.00 3.41
218 219 4.521639 TGTAGACGTACCATGAACTCTGTT 59.478 41.667 0.00 0.00 0.00 3.16
219 220 3.914312 AGACGTACCATGAACTCTGTTG 58.086 45.455 0.00 0.00 0.00 3.33
220 221 2.412089 GACGTACCATGAACTCTGTTGC 59.588 50.000 0.00 0.00 0.00 4.17
221 222 2.037251 ACGTACCATGAACTCTGTTGCT 59.963 45.455 0.00 0.00 0.00 3.91
222 223 2.668457 CGTACCATGAACTCTGTTGCTC 59.332 50.000 0.00 0.00 0.00 4.26
223 224 2.936919 ACCATGAACTCTGTTGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
224 225 3.430042 ACCATGAACTCTGTTGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
225 226 3.079578 ACCATGAACTCTGTTGCTCATG 58.920 45.455 0.00 4.31 43.09 3.07
226 227 3.244665 ACCATGAACTCTGTTGCTCATGA 60.245 43.478 11.48 0.00 45.21 3.07
227 228 3.374367 CCATGAACTCTGTTGCTCATGAG 59.626 47.826 18.84 18.84 45.21 2.90
228 229 3.758755 TGAACTCTGTTGCTCATGAGT 57.241 42.857 23.38 0.26 36.70 3.41
229 230 4.077300 TGAACTCTGTTGCTCATGAGTT 57.923 40.909 23.38 8.39 41.90 3.01
230 231 5.213891 TGAACTCTGTTGCTCATGAGTTA 57.786 39.130 23.38 10.77 40.70 2.24
231 232 5.233225 TGAACTCTGTTGCTCATGAGTTAG 58.767 41.667 23.38 15.48 40.70 2.34
232 233 3.594134 ACTCTGTTGCTCATGAGTTAGC 58.406 45.455 23.38 14.90 39.25 3.09
233 234 3.007290 ACTCTGTTGCTCATGAGTTAGCA 59.993 43.478 23.38 18.13 46.59 3.49
239 240 4.952262 TGCTCATGAGTTAGCACAAATC 57.048 40.909 23.38 3.35 43.56 2.17
240 241 3.371898 TGCTCATGAGTTAGCACAAATCG 59.628 43.478 23.38 0.00 43.56 3.34
241 242 3.242543 GCTCATGAGTTAGCACAAATCGG 60.243 47.826 23.38 0.00 38.63 4.18
242 243 3.935203 CTCATGAGTTAGCACAAATCGGT 59.065 43.478 14.95 0.00 0.00 4.69
243 244 4.323417 TCATGAGTTAGCACAAATCGGTT 58.677 39.130 0.00 0.00 0.00 4.44
244 245 4.154015 TCATGAGTTAGCACAAATCGGTTG 59.846 41.667 0.00 0.00 43.43 3.77
253 254 2.629639 CAAATCGGTTGTACTTGCCC 57.370 50.000 0.00 0.00 32.08 5.36
254 255 1.883275 CAAATCGGTTGTACTTGCCCA 59.117 47.619 0.00 0.00 32.08 5.36
255 256 1.530323 AATCGGTTGTACTTGCCCAC 58.470 50.000 0.00 0.00 0.00 4.61
256 257 0.322187 ATCGGTTGTACTTGCCCACC 60.322 55.000 0.00 0.00 0.00 4.61
257 258 1.072505 CGGTTGTACTTGCCCACCT 59.927 57.895 0.00 0.00 0.00 4.00
258 259 0.322322 CGGTTGTACTTGCCCACCTA 59.678 55.000 0.00 0.00 0.00 3.08
259 260 1.270947 CGGTTGTACTTGCCCACCTAA 60.271 52.381 0.00 0.00 0.00 2.69
260 261 2.617021 CGGTTGTACTTGCCCACCTAAT 60.617 50.000 0.00 0.00 0.00 1.73
261 262 3.369681 CGGTTGTACTTGCCCACCTAATA 60.370 47.826 0.00 0.00 0.00 0.98
262 263 4.591929 GGTTGTACTTGCCCACCTAATAA 58.408 43.478 0.00 0.00 0.00 1.40
263 264 4.638865 GGTTGTACTTGCCCACCTAATAAG 59.361 45.833 0.00 0.00 0.00 1.73
264 265 5.250982 GTTGTACTTGCCCACCTAATAAGT 58.749 41.667 0.00 0.00 35.86 2.24
265 266 4.839121 TGTACTTGCCCACCTAATAAGTG 58.161 43.478 0.00 0.00 33.93 3.16
266 267 4.287585 TGTACTTGCCCACCTAATAAGTGT 59.712 41.667 0.00 0.00 33.93 3.55
267 268 3.686016 ACTTGCCCACCTAATAAGTGTG 58.314 45.455 0.00 0.00 33.20 3.82
268 269 3.073946 ACTTGCCCACCTAATAAGTGTGT 59.926 43.478 0.00 0.00 33.20 3.72
269 270 3.066291 TGCCCACCTAATAAGTGTGTG 57.934 47.619 0.00 0.00 33.20 3.82
270 271 2.290641 TGCCCACCTAATAAGTGTGTGG 60.291 50.000 0.00 0.00 44.79 4.17
275 276 4.253685 CACCTAATAAGTGTGTGGAGTGG 58.746 47.826 0.00 0.00 0.00 4.00
276 277 3.263425 ACCTAATAAGTGTGTGGAGTGGG 59.737 47.826 0.00 0.00 0.00 4.61
277 278 3.517901 CCTAATAAGTGTGTGGAGTGGGA 59.482 47.826 0.00 0.00 0.00 4.37
278 279 3.418684 AATAAGTGTGTGGAGTGGGAC 57.581 47.619 0.00 0.00 0.00 4.46
279 280 1.796017 TAAGTGTGTGGAGTGGGACA 58.204 50.000 0.00 0.00 0.00 4.02
293 294 3.374506 GGACACTATTGTACCGCCC 57.625 57.895 0.00 0.00 35.47 6.13
294 295 0.538118 GGACACTATTGTACCGCCCA 59.462 55.000 0.00 0.00 35.47 5.36
295 296 1.065998 GGACACTATTGTACCGCCCAA 60.066 52.381 0.00 0.00 35.47 4.12
296 297 2.616001 GGACACTATTGTACCGCCCAAA 60.616 50.000 0.00 0.00 35.47 3.28
297 298 2.676342 GACACTATTGTACCGCCCAAAG 59.324 50.000 0.00 0.00 35.47 2.77
298 299 2.039348 ACACTATTGTACCGCCCAAAGT 59.961 45.455 0.00 0.00 32.60 2.66
299 300 2.418628 CACTATTGTACCGCCCAAAGTG 59.581 50.000 0.00 0.00 31.37 3.16
306 307 3.685435 CGCCCAAAGTGGATGCTT 58.315 55.556 0.00 0.00 40.96 3.91
307 308 1.213537 CGCCCAAAGTGGATGCTTG 59.786 57.895 0.00 0.00 40.96 4.01
308 309 1.079612 GCCCAAAGTGGATGCTTGC 60.080 57.895 0.00 0.00 40.96 4.01
309 310 1.213537 CCCAAAGTGGATGCTTGCG 59.786 57.895 0.00 0.00 40.96 4.85
310 311 1.526575 CCCAAAGTGGATGCTTGCGT 61.527 55.000 0.00 0.00 40.96 5.24
311 312 0.387622 CCAAAGTGGATGCTTGCGTG 60.388 55.000 0.00 0.00 40.96 5.34
312 313 0.311790 CAAAGTGGATGCTTGCGTGT 59.688 50.000 0.00 0.00 0.00 4.49
313 314 0.593128 AAAGTGGATGCTTGCGTGTC 59.407 50.000 0.00 0.00 0.00 3.67
314 315 1.568612 AAGTGGATGCTTGCGTGTCG 61.569 55.000 0.00 0.00 0.00 4.35
315 316 2.741985 TGGATGCTTGCGTGTCGG 60.742 61.111 0.00 0.00 0.00 4.79
316 317 3.499737 GGATGCTTGCGTGTCGGG 61.500 66.667 0.00 0.00 0.00 5.14
317 318 4.166011 GATGCTTGCGTGTCGGGC 62.166 66.667 0.00 0.00 0.00 6.13
321 322 2.202690 CTTGCGTGTCGGGCGATA 60.203 61.111 0.00 0.00 0.00 2.92
322 323 1.591594 CTTGCGTGTCGGGCGATAT 60.592 57.895 0.00 0.00 0.00 1.63
323 324 1.821241 CTTGCGTGTCGGGCGATATG 61.821 60.000 0.00 0.00 0.00 1.78
324 325 3.702555 GCGTGTCGGGCGATATGC 61.703 66.667 0.00 0.00 40.10 3.14
333 334 3.768632 GCGATATGCCCGATCGTC 58.231 61.111 15.09 6.02 46.25 4.20
334 335 2.152699 GCGATATGCCCGATCGTCG 61.153 63.158 15.09 15.84 46.25 5.12
335 336 1.209383 CGATATGCCCGATCGTCGT 59.791 57.895 15.09 9.23 41.00 4.34
336 337 0.386858 CGATATGCCCGATCGTCGTT 60.387 55.000 15.09 0.00 41.00 3.85
337 338 1.060713 GATATGCCCGATCGTCGTTG 58.939 55.000 15.09 0.00 38.40 4.10
338 339 0.671796 ATATGCCCGATCGTCGTTGA 59.328 50.000 15.09 0.00 38.40 3.18
339 340 0.671796 TATGCCCGATCGTCGTTGAT 59.328 50.000 15.09 0.00 38.40 2.57
340 341 0.597637 ATGCCCGATCGTCGTTGATC 60.598 55.000 15.09 8.85 41.10 2.92
341 342 1.065928 GCCCGATCGTCGTTGATCT 59.934 57.895 15.09 0.00 42.10 2.75
342 343 0.309922 GCCCGATCGTCGTTGATCTA 59.690 55.000 15.09 0.00 42.10 1.98
343 344 1.068472 GCCCGATCGTCGTTGATCTAT 60.068 52.381 15.09 0.00 42.10 1.98
344 345 2.161012 GCCCGATCGTCGTTGATCTATA 59.839 50.000 15.09 0.00 42.10 1.31
345 346 3.365666 GCCCGATCGTCGTTGATCTATAA 60.366 47.826 15.09 0.00 42.10 0.98
346 347 4.790878 CCCGATCGTCGTTGATCTATAAA 58.209 43.478 15.09 0.00 42.10 1.40
347 348 4.852104 CCCGATCGTCGTTGATCTATAAAG 59.148 45.833 15.09 0.00 42.10 1.85
348 349 4.321217 CCGATCGTCGTTGATCTATAAAGC 59.679 45.833 15.09 0.00 42.10 3.51
349 350 5.147865 CGATCGTCGTTGATCTATAAAGCT 58.852 41.667 7.03 0.00 42.10 3.74
350 351 5.625721 CGATCGTCGTTGATCTATAAAGCTT 59.374 40.000 7.03 0.00 42.10 3.74
351 352 6.142480 CGATCGTCGTTGATCTATAAAGCTTT 59.858 38.462 17.30 17.30 42.10 3.51
352 353 6.569228 TCGTCGTTGATCTATAAAGCTTTG 57.431 37.500 22.02 5.30 0.00 2.77
353 354 5.005394 TCGTCGTTGATCTATAAAGCTTTGC 59.995 40.000 22.02 4.80 0.00 3.68
354 355 5.005779 CGTCGTTGATCTATAAAGCTTTGCT 59.994 40.000 22.02 11.18 42.56 3.91
387 388 5.966636 AAAAGAAAATCTTTGCGGTGAAC 57.033 34.783 6.14 0.00 45.19 3.18
388 389 4.647424 AAGAAAATCTTTGCGGTGAACA 57.353 36.364 0.00 0.00 31.57 3.18
389 390 4.647424 AGAAAATCTTTGCGGTGAACAA 57.353 36.364 0.00 0.00 0.00 2.83
390 391 5.004922 AGAAAATCTTTGCGGTGAACAAA 57.995 34.783 0.00 0.00 35.77 2.83
391 392 5.415221 AGAAAATCTTTGCGGTGAACAAAA 58.585 33.333 0.00 0.00 36.63 2.44
392 393 5.872070 AGAAAATCTTTGCGGTGAACAAAAA 59.128 32.000 0.00 0.00 36.63 1.94
448 449 6.851222 ATAATAAAGCACGGATTGAGTCTG 57.149 37.500 0.00 0.00 39.25 3.51
486 487 2.359848 GGCGTTTTTACACAAAGGTCCT 59.640 45.455 0.00 0.00 0.00 3.85
521 522 6.702723 GTGTATTCAACCCGCAGTACATATAA 59.297 38.462 0.00 0.00 0.00 0.98
597 599 1.335780 CCATCTCGATCTCCAAGCTCG 60.336 57.143 0.00 0.00 35.40 5.03
948 1123 1.522900 CCCTCCTCTCTCTCTCTCCT 58.477 60.000 0.00 0.00 0.00 3.69
1081 1799 0.698818 GGTCCCTGTCATGAAACCCT 59.301 55.000 0.00 0.00 0.00 4.34
1206 2141 2.175811 GTGTTTCCGACGCCATGC 59.824 61.111 0.00 0.00 32.52 4.06
1376 3216 0.753262 AGCCAGGTAGGTAATGCTCG 59.247 55.000 0.00 0.00 40.61 5.03
1441 3281 1.277842 TCTGAATCCTAAGCCGTGCAA 59.722 47.619 0.00 0.00 0.00 4.08
1524 3481 2.842462 ACACCGGTGGAGCTGACA 60.842 61.111 36.47 0.00 34.19 3.58
1542 4683 3.971702 GGGAACAGCCAGGCAGGT 61.972 66.667 15.80 3.24 40.61 4.00
1559 4700 3.691342 TCCGGTGAAGCGTGGAGG 61.691 66.667 0.00 0.00 0.00 4.30
1560 4701 3.691342 CCGGTGAAGCGTGGAGGA 61.691 66.667 0.00 0.00 0.00 3.71
1578 4894 2.297597 AGGAGTCGACAAGAACCTCAAG 59.702 50.000 19.50 0.00 34.39 3.02
1580 4896 3.570559 GAGTCGACAAGAACCTCAAGAG 58.429 50.000 19.50 0.00 0.00 2.85
1601 4980 8.790718 CAAGAGGTAGTAACTCAACTAACAGTA 58.209 37.037 17.48 0.00 41.32 2.74
1611 4997 6.288294 ACTCAACTAACAGTATCACTTTGCA 58.712 36.000 0.00 0.00 0.00 4.08
1612 4998 6.936900 ACTCAACTAACAGTATCACTTTGCAT 59.063 34.615 0.00 0.00 0.00 3.96
1613 4999 7.118390 ACTCAACTAACAGTATCACTTTGCATC 59.882 37.037 0.00 0.00 0.00 3.91
1640 5026 6.700081 TGTGTGAGTTACTACTTGTTCATCAC 59.300 38.462 0.00 0.00 33.84 3.06
1666 5052 5.974158 CGTCTATCACTACTGATCTTGGTTG 59.026 44.000 0.00 0.00 38.21 3.77
1667 5053 6.404844 CGTCTATCACTACTGATCTTGGTTGT 60.405 42.308 0.00 0.00 38.21 3.32
1726 5112 2.363680 AGATGAGCAAGACGATACTGGG 59.636 50.000 0.00 0.00 0.00 4.45
1779 5739 0.370273 CCGCGACGAGGAAATCTTTG 59.630 55.000 12.82 0.00 0.00 2.77
1843 5803 0.614979 ATGGACACGGTAGAGGCTGT 60.615 55.000 0.00 0.00 0.00 4.40
1931 5891 2.158856 TGAGCACCTCAAGCCATATGAG 60.159 50.000 3.65 0.00 43.15 2.90
1985 5945 2.717809 GAACGTCGACTTCGCCAGC 61.718 63.158 14.70 0.00 39.60 4.85
2023 5983 1.690985 GCTCCCCTCAAGGTAGGCT 60.691 63.158 0.00 0.00 35.09 4.58
2119 6079 9.813446 CTATATGTAGAAAATATTACCCCGTCC 57.187 37.037 0.00 0.00 0.00 4.79
2120 6080 6.758806 ATGTAGAAAATATTACCCCGTCCT 57.241 37.500 0.00 0.00 0.00 3.85
2124 6084 7.564660 TGTAGAAAATATTACCCCGTCCTCTAA 59.435 37.037 0.00 0.00 0.00 2.10
2132 6092 2.289257 ACCCCGTCCTCTAAAAACTTCG 60.289 50.000 0.00 0.00 0.00 3.79
2184 6144 2.728007 GCCCCATGCTTCTACTTTCTT 58.272 47.619 0.00 0.00 36.87 2.52
2219 6179 1.497286 TGAGGCCTTGGTTAGTTTGGT 59.503 47.619 6.77 0.00 0.00 3.67
2384 8433 1.221007 TGGATGGGCCATGGATGATTT 59.779 47.619 26.77 0.00 43.33 2.17
2462 8511 8.109634 ACATGGTTATGTACCTTCAAGAATTCT 58.890 33.333 0.88 0.88 45.45 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.968017 ACCGCCAGTGCATTGACTG 60.968 57.895 11.31 2.72 42.68 3.51
2 3 1.968017 CACCGCCAGTGCATTGACT 60.968 57.895 11.31 0.00 40.28 3.41
3 4 2.562912 CACCGCCAGTGCATTGAC 59.437 61.111 11.31 0.00 40.28 3.18
4 5 2.672651 CCACCGCCAGTGCATTGA 60.673 61.111 11.31 0.00 45.83 2.57
5 6 4.424566 GCCACCGCCAGTGCATTG 62.425 66.667 1.49 1.49 45.83 2.82
16 17 2.897846 TTGTTGTCACCGCCACCG 60.898 61.111 0.00 0.00 0.00 4.94
17 18 2.719354 GTTGTTGTCACCGCCACC 59.281 61.111 0.00 0.00 0.00 4.61
18 19 2.326550 CGTTGTTGTCACCGCCAC 59.673 61.111 0.00 0.00 0.00 5.01
19 20 2.897846 CCGTTGTTGTCACCGCCA 60.898 61.111 0.00 0.00 0.00 5.69
20 21 4.322385 GCCGTTGTTGTCACCGCC 62.322 66.667 0.00 0.00 0.00 6.13
21 22 3.276846 AGCCGTTGTTGTCACCGC 61.277 61.111 0.00 0.00 0.00 5.68
22 23 1.227999 ATCAGCCGTTGTTGTCACCG 61.228 55.000 0.00 0.00 0.00 4.94
23 24 1.803334 TATCAGCCGTTGTTGTCACC 58.197 50.000 0.00 0.00 0.00 4.02
24 25 2.095853 CCATATCAGCCGTTGTTGTCAC 59.904 50.000 0.00 0.00 0.00 3.67
25 26 2.355197 CCATATCAGCCGTTGTTGTCA 58.645 47.619 0.00 0.00 0.00 3.58
26 27 1.670811 CCCATATCAGCCGTTGTTGTC 59.329 52.381 0.00 0.00 0.00 3.18
27 28 1.280710 TCCCATATCAGCCGTTGTTGT 59.719 47.619 0.00 0.00 0.00 3.32
28 29 1.942657 CTCCCATATCAGCCGTTGTTG 59.057 52.381 0.00 0.00 0.00 3.33
29 30 1.559682 ACTCCCATATCAGCCGTTGTT 59.440 47.619 0.00 0.00 0.00 2.83
30 31 1.204146 ACTCCCATATCAGCCGTTGT 58.796 50.000 0.00 0.00 0.00 3.32
31 32 1.942657 CAACTCCCATATCAGCCGTTG 59.057 52.381 0.00 0.00 0.00 4.10
32 33 1.559682 ACAACTCCCATATCAGCCGTT 59.440 47.619 0.00 0.00 0.00 4.44
33 34 1.139058 GACAACTCCCATATCAGCCGT 59.861 52.381 0.00 0.00 0.00 5.68
34 35 1.138859 TGACAACTCCCATATCAGCCG 59.861 52.381 0.00 0.00 0.00 5.52
35 36 2.486191 CCTGACAACTCCCATATCAGCC 60.486 54.545 0.00 0.00 36.32 4.85
36 37 2.486191 CCCTGACAACTCCCATATCAGC 60.486 54.545 0.00 0.00 36.32 4.26
37 38 2.774234 ACCCTGACAACTCCCATATCAG 59.226 50.000 0.00 0.00 37.20 2.90
38 39 2.771943 GACCCTGACAACTCCCATATCA 59.228 50.000 0.00 0.00 0.00 2.15
39 40 3.041946 AGACCCTGACAACTCCCATATC 58.958 50.000 0.00 0.00 0.00 1.63
40 41 3.041946 GAGACCCTGACAACTCCCATAT 58.958 50.000 0.00 0.00 0.00 1.78
41 42 2.467880 GAGACCCTGACAACTCCCATA 58.532 52.381 0.00 0.00 0.00 2.74
42 43 1.280457 GAGACCCTGACAACTCCCAT 58.720 55.000 0.00 0.00 0.00 4.00
43 44 0.836400 GGAGACCCTGACAACTCCCA 60.836 60.000 0.00 0.00 41.89 4.37
44 45 0.545548 AGGAGACCCTGACAACTCCC 60.546 60.000 0.00 0.00 46.88 4.30
45 46 1.353091 AAGGAGACCCTGACAACTCC 58.647 55.000 0.00 0.00 43.48 3.85
46 47 2.368875 TCAAAGGAGACCCTGACAACTC 59.631 50.000 0.00 0.00 43.48 3.01
47 48 2.370189 CTCAAAGGAGACCCTGACAACT 59.630 50.000 0.00 0.00 43.48 3.16
48 49 2.368875 TCTCAAAGGAGACCCTGACAAC 59.631 50.000 0.00 0.00 45.12 3.32
49 50 2.689658 TCTCAAAGGAGACCCTGACAA 58.310 47.619 0.00 0.00 45.12 3.18
50 51 2.398754 TCTCAAAGGAGACCCTGACA 57.601 50.000 0.00 0.00 45.12 3.58
59 60 2.163412 CTCAGAGTCCGTCTCAAAGGAG 59.837 54.545 7.43 0.00 44.98 3.69
60 61 2.163509 CTCAGAGTCCGTCTCAAAGGA 58.836 52.381 7.43 0.00 44.98 3.36
61 62 1.403514 GCTCAGAGTCCGTCTCAAAGG 60.404 57.143 0.00 0.00 44.98 3.11
62 63 1.543802 AGCTCAGAGTCCGTCTCAAAG 59.456 52.381 0.00 5.39 44.98 2.77
63 64 1.621992 AGCTCAGAGTCCGTCTCAAA 58.378 50.000 0.00 0.00 44.98 2.69
64 65 2.085320 GTAGCTCAGAGTCCGTCTCAA 58.915 52.381 0.00 0.00 44.98 3.02
65 66 1.279558 AGTAGCTCAGAGTCCGTCTCA 59.720 52.381 0.00 0.00 44.98 3.27
66 67 1.668751 CAGTAGCTCAGAGTCCGTCTC 59.331 57.143 0.00 0.00 43.05 3.36
67 68 1.680555 CCAGTAGCTCAGAGTCCGTCT 60.681 57.143 0.00 0.00 35.00 4.18
68 69 0.736053 CCAGTAGCTCAGAGTCCGTC 59.264 60.000 0.00 0.00 0.00 4.79
69 70 1.316706 GCCAGTAGCTCAGAGTCCGT 61.317 60.000 0.00 0.00 38.99 4.69
70 71 1.435515 GCCAGTAGCTCAGAGTCCG 59.564 63.158 0.00 0.00 38.99 4.79
71 72 1.819905 GGCCAGTAGCTCAGAGTCC 59.180 63.158 0.00 0.00 43.05 3.85
72 73 1.032657 TCGGCCAGTAGCTCAGAGTC 61.033 60.000 2.24 0.00 43.05 3.36
73 74 0.396417 ATCGGCCAGTAGCTCAGAGT 60.396 55.000 2.24 0.00 43.05 3.24
74 75 0.031857 CATCGGCCAGTAGCTCAGAG 59.968 60.000 2.24 0.00 43.05 3.35
75 76 2.021068 GCATCGGCCAGTAGCTCAGA 62.021 60.000 2.24 0.00 43.05 3.27
76 77 1.593750 GCATCGGCCAGTAGCTCAG 60.594 63.158 2.24 0.00 43.05 3.35
77 78 1.898330 TTGCATCGGCCAGTAGCTCA 61.898 55.000 2.24 0.00 43.05 4.26
78 79 0.533755 ATTGCATCGGCCAGTAGCTC 60.534 55.000 2.24 0.00 43.05 4.09
79 80 0.816825 CATTGCATCGGCCAGTAGCT 60.817 55.000 2.24 0.00 43.05 3.32
80 81 1.650912 CATTGCATCGGCCAGTAGC 59.349 57.895 2.24 0.86 40.13 3.58
81 82 0.179048 TCCATTGCATCGGCCAGTAG 60.179 55.000 2.24 0.00 40.13 2.57
82 83 0.473755 ATCCATTGCATCGGCCAGTA 59.526 50.000 2.24 0.00 40.13 2.74
83 84 1.105167 CATCCATTGCATCGGCCAGT 61.105 55.000 2.24 0.00 40.13 4.00
84 85 1.105167 ACATCCATTGCATCGGCCAG 61.105 55.000 2.24 0.00 40.13 4.85
85 86 1.076850 ACATCCATTGCATCGGCCA 60.077 52.632 2.24 0.00 40.13 5.36
86 87 1.656441 GACATCCATTGCATCGGCC 59.344 57.895 0.00 0.00 40.13 6.13
87 88 1.102809 TGGACATCCATTGCATCGGC 61.103 55.000 0.00 0.00 42.01 5.54
88 89 0.949397 CTGGACATCCATTGCATCGG 59.051 55.000 0.00 0.00 46.46 4.18
89 90 0.309922 GCTGGACATCCATTGCATCG 59.690 55.000 0.00 0.00 46.46 3.84
90 91 0.309922 CGCTGGACATCCATTGCATC 59.690 55.000 11.47 0.00 46.46 3.91
91 92 1.731433 GCGCTGGACATCCATTGCAT 61.731 55.000 15.83 0.00 46.46 3.96
92 93 2.409055 GCGCTGGACATCCATTGCA 61.409 57.895 15.83 0.00 46.46 4.08
93 94 2.410469 GCGCTGGACATCCATTGC 59.590 61.111 0.00 4.99 46.46 3.56
94 95 0.809636 TACGCGCTGGACATCCATTG 60.810 55.000 5.73 0.00 46.46 2.82
95 96 0.530650 CTACGCGCTGGACATCCATT 60.531 55.000 5.73 0.00 46.46 3.16
96 97 1.068083 CTACGCGCTGGACATCCAT 59.932 57.895 5.73 0.00 46.46 3.41
97 98 1.391933 ATCTACGCGCTGGACATCCA 61.392 55.000 5.73 0.00 45.30 3.41
98 99 0.249489 AATCTACGCGCTGGACATCC 60.249 55.000 5.73 0.00 0.00 3.51
99 100 1.132588 GAATCTACGCGCTGGACATC 58.867 55.000 5.73 1.05 0.00 3.06
100 101 0.747255 AGAATCTACGCGCTGGACAT 59.253 50.000 5.73 0.00 0.00 3.06
101 102 0.530744 AAGAATCTACGCGCTGGACA 59.469 50.000 5.73 0.00 0.00 4.02
102 103 1.201343 GAAGAATCTACGCGCTGGAC 58.799 55.000 5.73 0.00 0.00 4.02
103 104 0.248498 CGAAGAATCTACGCGCTGGA 60.248 55.000 5.73 1.70 0.00 3.86
104 105 1.812214 GCGAAGAATCTACGCGCTGG 61.812 60.000 5.73 0.00 43.85 4.85
105 106 1.555538 GCGAAGAATCTACGCGCTG 59.444 57.895 5.73 1.02 43.85 5.18
106 107 3.999051 GCGAAGAATCTACGCGCT 58.001 55.556 5.73 0.00 43.85 5.92
110 111 3.980238 GCATATGGCGAAGAATCTACG 57.020 47.619 4.56 0.00 0.00 3.51
122 123 1.334556 TCAACGATTGCTGCATATGGC 59.665 47.619 1.84 0.69 45.13 4.40
123 124 3.313249 TCTTCAACGATTGCTGCATATGG 59.687 43.478 1.84 4.41 0.00 2.74
124 125 4.541085 TCTTCAACGATTGCTGCATATG 57.459 40.909 1.84 0.00 0.00 1.78
125 126 5.759763 TGTATCTTCAACGATTGCTGCATAT 59.240 36.000 1.84 0.00 0.00 1.78
126 127 5.115480 TGTATCTTCAACGATTGCTGCATA 58.885 37.500 1.84 0.00 0.00 3.14
127 128 3.940852 TGTATCTTCAACGATTGCTGCAT 59.059 39.130 1.84 0.00 0.00 3.96
128 129 3.333804 TGTATCTTCAACGATTGCTGCA 58.666 40.909 0.00 0.00 0.00 4.41
129 130 4.340894 TTGTATCTTCAACGATTGCTGC 57.659 40.909 0.00 0.00 0.00 5.25
130 131 5.931532 ACTTTGTATCTTCAACGATTGCTG 58.068 37.500 0.00 0.00 0.00 4.41
131 132 6.560253 AACTTTGTATCTTCAACGATTGCT 57.440 33.333 0.00 0.00 0.00 3.91
132 133 6.855914 TGAAACTTTGTATCTTCAACGATTGC 59.144 34.615 0.00 0.00 0.00 3.56
133 134 8.781067 TTGAAACTTTGTATCTTCAACGATTG 57.219 30.769 0.00 0.00 33.90 2.67
134 135 9.965824 AATTGAAACTTTGTATCTTCAACGATT 57.034 25.926 0.00 0.00 39.78 3.34
151 152 9.454859 TGGAAAACCACATTTTTAATTGAAACT 57.545 25.926 0.00 0.00 40.73 2.66
156 157 9.460906 CCATTTGGAAAACCACATTTTTAATTG 57.539 29.630 0.00 0.00 40.73 2.32
157 158 9.413734 TCCATTTGGAAAACCACATTTTTAATT 57.586 25.926 0.00 0.00 40.73 1.40
158 159 8.986929 TCCATTTGGAAAACCACATTTTTAAT 57.013 26.923 0.00 0.00 40.73 1.40
159 160 8.049721 ACTCCATTTGGAAAACCACATTTTTAA 58.950 29.630 0.18 0.00 44.91 1.52
160 161 7.497249 CACTCCATTTGGAAAACCACATTTTTA 59.503 33.333 0.18 0.00 44.91 1.52
161 162 6.318396 CACTCCATTTGGAAAACCACATTTTT 59.682 34.615 0.18 0.00 44.91 1.94
162 163 5.821995 CACTCCATTTGGAAAACCACATTTT 59.178 36.000 0.18 0.00 44.91 1.82
163 164 5.104569 ACACTCCATTTGGAAAACCACATTT 60.105 36.000 0.18 0.00 44.91 2.32
164 165 4.408596 ACACTCCATTTGGAAAACCACATT 59.591 37.500 0.18 0.00 44.91 2.71
165 166 3.966665 ACACTCCATTTGGAAAACCACAT 59.033 39.130 0.18 0.00 44.91 3.21
166 167 3.370104 ACACTCCATTTGGAAAACCACA 58.630 40.909 0.18 0.00 44.91 4.17
167 168 4.400529 AACACTCCATTTGGAAAACCAC 57.599 40.909 0.18 0.00 44.91 4.16
168 169 5.068460 CACTAACACTCCATTTGGAAAACCA 59.932 40.000 0.18 0.00 44.91 3.67
169 170 5.528870 CACTAACACTCCATTTGGAAAACC 58.471 41.667 0.18 0.00 44.91 3.27
170 171 4.982295 GCACTAACACTCCATTTGGAAAAC 59.018 41.667 0.18 0.00 44.91 2.43
171 172 4.261405 CGCACTAACACTCCATTTGGAAAA 60.261 41.667 0.18 0.00 44.91 2.29
172 173 3.252215 CGCACTAACACTCCATTTGGAAA 59.748 43.478 0.18 0.00 44.91 3.13
173 174 2.811431 CGCACTAACACTCCATTTGGAA 59.189 45.455 0.18 0.00 44.91 3.53
174 175 2.224426 ACGCACTAACACTCCATTTGGA 60.224 45.455 0.00 0.00 43.08 3.53
175 176 2.095768 CACGCACTAACACTCCATTTGG 60.096 50.000 0.00 0.00 0.00 3.28
176 177 2.548057 ACACGCACTAACACTCCATTTG 59.452 45.455 0.00 0.00 0.00 2.32
177 178 2.846193 ACACGCACTAACACTCCATTT 58.154 42.857 0.00 0.00 0.00 2.32
178 179 2.543777 ACACGCACTAACACTCCATT 57.456 45.000 0.00 0.00 0.00 3.16
179 180 2.823747 TCTACACGCACTAACACTCCAT 59.176 45.455 0.00 0.00 0.00 3.41
180 181 2.030540 GTCTACACGCACTAACACTCCA 60.031 50.000 0.00 0.00 0.00 3.86
181 182 2.593257 GTCTACACGCACTAACACTCC 58.407 52.381 0.00 0.00 0.00 3.85
182 183 2.240040 CGTCTACACGCACTAACACTC 58.760 52.381 0.00 0.00 39.69 3.51
183 184 2.327081 CGTCTACACGCACTAACACT 57.673 50.000 0.00 0.00 39.69 3.55
194 195 4.082895 ACAGAGTTCATGGTACGTCTACAC 60.083 45.833 0.00 0.00 0.00 2.90
195 196 4.077108 ACAGAGTTCATGGTACGTCTACA 58.923 43.478 0.00 0.00 0.00 2.74
196 197 4.698583 ACAGAGTTCATGGTACGTCTAC 57.301 45.455 0.00 0.00 0.00 2.59
197 198 4.617530 GCAACAGAGTTCATGGTACGTCTA 60.618 45.833 0.00 0.00 0.00 2.59
198 199 3.861131 GCAACAGAGTTCATGGTACGTCT 60.861 47.826 0.00 0.00 0.00 4.18
199 200 2.412089 GCAACAGAGTTCATGGTACGTC 59.588 50.000 0.00 0.00 0.00 4.34
200 201 2.037251 AGCAACAGAGTTCATGGTACGT 59.963 45.455 0.00 0.00 0.00 3.57
201 202 2.668457 GAGCAACAGAGTTCATGGTACG 59.332 50.000 0.00 0.00 0.00 3.67
202 203 3.664107 TGAGCAACAGAGTTCATGGTAC 58.336 45.455 0.00 0.00 0.00 3.34
203 204 4.256110 CATGAGCAACAGAGTTCATGGTA 58.744 43.478 11.41 0.00 46.81 3.25
204 205 2.936919 TGAGCAACAGAGTTCATGGT 57.063 45.000 0.00 0.00 0.00 3.55
205 206 3.759527 CATGAGCAACAGAGTTCATGG 57.240 47.619 11.41 0.00 46.81 3.66
207 208 4.283363 ACTCATGAGCAACAGAGTTCAT 57.717 40.909 22.83 0.00 39.60 2.57
208 209 3.758755 ACTCATGAGCAACAGAGTTCA 57.241 42.857 22.83 0.00 35.29 3.18
209 210 4.092675 GCTAACTCATGAGCAACAGAGTTC 59.907 45.833 22.83 11.28 41.35 3.01
210 211 3.999663 GCTAACTCATGAGCAACAGAGTT 59.000 43.478 22.83 20.07 42.90 3.01
211 212 3.007290 TGCTAACTCATGAGCAACAGAGT 59.993 43.478 22.83 0.00 45.47 3.24
212 213 3.593096 TGCTAACTCATGAGCAACAGAG 58.407 45.455 22.83 11.26 45.47 3.35
213 214 3.683365 TGCTAACTCATGAGCAACAGA 57.317 42.857 22.83 0.00 45.47 3.41
218 219 3.371898 CGATTTGTGCTAACTCATGAGCA 59.628 43.478 22.83 12.85 46.24 4.26
219 220 3.242543 CCGATTTGTGCTAACTCATGAGC 60.243 47.826 22.83 10.16 39.25 4.26
220 221 3.935203 ACCGATTTGTGCTAACTCATGAG 59.065 43.478 21.37 21.37 0.00 2.90
221 222 3.937814 ACCGATTTGTGCTAACTCATGA 58.062 40.909 0.00 0.00 0.00 3.07
222 223 4.406069 CAACCGATTTGTGCTAACTCATG 58.594 43.478 0.00 0.00 0.00 3.07
223 224 4.685169 CAACCGATTTGTGCTAACTCAT 57.315 40.909 0.00 0.00 0.00 2.90
234 235 1.883275 TGGGCAAGTACAACCGATTTG 59.117 47.619 0.00 0.00 41.49 2.32
235 236 1.883926 GTGGGCAAGTACAACCGATTT 59.116 47.619 0.00 0.00 0.00 2.17
236 237 1.530323 GTGGGCAAGTACAACCGATT 58.470 50.000 0.00 0.00 0.00 3.34
237 238 0.322187 GGTGGGCAAGTACAACCGAT 60.322 55.000 0.00 0.00 0.00 4.18
238 239 1.071814 GGTGGGCAAGTACAACCGA 59.928 57.895 0.00 0.00 0.00 4.69
239 240 0.322322 TAGGTGGGCAAGTACAACCG 59.678 55.000 0.00 0.00 0.00 4.44
240 241 2.572209 TTAGGTGGGCAAGTACAACC 57.428 50.000 0.00 0.00 0.00 3.77
241 242 5.123344 CACTTATTAGGTGGGCAAGTACAAC 59.877 44.000 0.00 0.00 0.00 3.32
242 243 5.221966 ACACTTATTAGGTGGGCAAGTACAA 60.222 40.000 10.31 0.00 38.83 2.41
243 244 4.287585 ACACTTATTAGGTGGGCAAGTACA 59.712 41.667 10.31 0.00 38.83 2.90
244 245 4.634443 CACACTTATTAGGTGGGCAAGTAC 59.366 45.833 10.31 0.00 38.83 2.73
245 246 4.287585 ACACACTTATTAGGTGGGCAAGTA 59.712 41.667 8.02 0.00 41.33 2.24
246 247 3.073946 ACACACTTATTAGGTGGGCAAGT 59.926 43.478 8.02 0.00 41.33 3.16
247 248 3.440173 CACACACTTATTAGGTGGGCAAG 59.560 47.826 8.02 0.00 41.33 4.01
248 249 3.417101 CACACACTTATTAGGTGGGCAA 58.583 45.455 8.02 0.00 41.33 4.52
249 250 2.290641 CCACACACTTATTAGGTGGGCA 60.291 50.000 8.02 0.00 44.06 5.36
250 251 2.026636 TCCACACACTTATTAGGTGGGC 60.027 50.000 8.02 0.00 46.93 5.36
251 252 3.263425 ACTCCACACACTTATTAGGTGGG 59.737 47.826 6.64 6.64 46.93 4.61
253 254 4.253685 CCACTCCACACACTTATTAGGTG 58.746 47.826 4.52 4.52 40.19 4.00
254 255 3.263425 CCCACTCCACACACTTATTAGGT 59.737 47.826 0.00 0.00 0.00 3.08
255 256 3.517901 TCCCACTCCACACACTTATTAGG 59.482 47.826 0.00 0.00 0.00 2.69
256 257 4.020573 TGTCCCACTCCACACACTTATTAG 60.021 45.833 0.00 0.00 0.00 1.73
257 258 3.904965 TGTCCCACTCCACACACTTATTA 59.095 43.478 0.00 0.00 0.00 0.98
258 259 2.708861 TGTCCCACTCCACACACTTATT 59.291 45.455 0.00 0.00 0.00 1.40
259 260 2.038557 GTGTCCCACTCCACACACTTAT 59.961 50.000 0.00 0.00 42.20 1.73
260 261 1.414919 GTGTCCCACTCCACACACTTA 59.585 52.381 0.00 0.00 42.20 2.24
261 262 0.180406 GTGTCCCACTCCACACACTT 59.820 55.000 0.00 0.00 42.20 3.16
262 263 0.691078 AGTGTCCCACTCCACACACT 60.691 55.000 5.09 0.00 41.21 3.55
263 264 1.045407 TAGTGTCCCACTCCACACAC 58.955 55.000 0.00 0.00 41.21 3.82
264 265 2.024176 ATAGTGTCCCACTCCACACA 57.976 50.000 0.00 0.00 41.21 3.72
265 266 2.038557 ACAATAGTGTCCCACTCCACAC 59.961 50.000 0.00 0.00 41.21 3.82
266 267 2.334977 ACAATAGTGTCCCACTCCACA 58.665 47.619 0.00 0.00 41.21 4.17
267 268 3.369157 GGTACAATAGTGTCCCACTCCAC 60.369 52.174 0.00 0.00 41.21 4.02
268 269 2.835764 GGTACAATAGTGTCCCACTCCA 59.164 50.000 0.00 0.00 41.21 3.86
269 270 2.159142 CGGTACAATAGTGTCCCACTCC 60.159 54.545 5.74 0.00 41.21 3.85
270 271 2.737679 GCGGTACAATAGTGTCCCACTC 60.738 54.545 5.74 0.00 41.21 3.51
272 273 1.648504 GCGGTACAATAGTGTCCCAC 58.351 55.000 5.74 0.00 39.30 4.61
273 274 0.538118 GGCGGTACAATAGTGTCCCA 59.462 55.000 5.74 0.00 39.30 4.37
274 275 0.179065 GGGCGGTACAATAGTGTCCC 60.179 60.000 0.00 0.00 39.30 4.46
275 276 0.538118 TGGGCGGTACAATAGTGTCC 59.462 55.000 0.00 0.34 39.30 4.02
276 277 2.389962 TTGGGCGGTACAATAGTGTC 57.610 50.000 0.00 0.00 39.30 3.67
277 278 2.039348 ACTTTGGGCGGTACAATAGTGT 59.961 45.455 0.00 0.00 42.09 3.55
278 279 2.418628 CACTTTGGGCGGTACAATAGTG 59.581 50.000 0.00 0.00 34.26 2.74
279 280 2.617021 CCACTTTGGGCGGTACAATAGT 60.617 50.000 0.00 0.00 32.67 2.12
280 281 2.014128 CCACTTTGGGCGGTACAATAG 58.986 52.381 0.00 0.00 32.67 1.73
281 282 1.629353 TCCACTTTGGGCGGTACAATA 59.371 47.619 0.00 0.00 38.32 1.90
282 283 0.402504 TCCACTTTGGGCGGTACAAT 59.597 50.000 0.00 0.00 38.32 2.71
283 284 0.402504 ATCCACTTTGGGCGGTACAA 59.597 50.000 0.00 0.00 38.32 2.41
284 285 0.322098 CATCCACTTTGGGCGGTACA 60.322 55.000 0.00 0.00 38.32 2.90
285 286 1.654023 GCATCCACTTTGGGCGGTAC 61.654 60.000 0.00 0.00 38.32 3.34
286 287 1.377987 GCATCCACTTTGGGCGGTA 60.378 57.895 0.00 0.00 38.32 4.02
287 288 2.676471 GCATCCACTTTGGGCGGT 60.676 61.111 0.00 0.00 38.32 5.68
288 289 1.978617 AAGCATCCACTTTGGGCGG 60.979 57.895 0.00 0.00 38.32 6.13
289 290 1.213537 CAAGCATCCACTTTGGGCG 59.786 57.895 0.00 0.00 38.32 6.13
290 291 1.079612 GCAAGCATCCACTTTGGGC 60.080 57.895 0.00 0.00 38.32 5.36
291 292 1.213537 CGCAAGCATCCACTTTGGG 59.786 57.895 0.00 0.00 38.32 4.12
292 293 0.387622 CACGCAAGCATCCACTTTGG 60.388 55.000 0.00 0.00 45.62 3.28
293 294 0.311790 ACACGCAAGCATCCACTTTG 59.688 50.000 0.00 0.00 45.62 2.77
294 295 0.593128 GACACGCAAGCATCCACTTT 59.407 50.000 0.00 0.00 45.62 2.66
295 296 1.568612 CGACACGCAAGCATCCACTT 61.569 55.000 0.00 0.00 45.62 3.16
296 297 2.029288 CGACACGCAAGCATCCACT 61.029 57.895 0.00 0.00 45.62 4.00
297 298 2.476051 CGACACGCAAGCATCCAC 59.524 61.111 0.00 0.00 45.62 4.02
298 299 2.741985 CCGACACGCAAGCATCCA 60.742 61.111 0.00 0.00 45.62 3.41
299 300 3.499737 CCCGACACGCAAGCATCC 61.500 66.667 0.00 0.00 45.62 3.51
300 301 4.166011 GCCCGACACGCAAGCATC 62.166 66.667 0.00 0.00 45.62 3.91
305 306 1.880796 CATATCGCCCGACACGCAA 60.881 57.895 0.00 0.00 0.00 4.85
306 307 2.279186 CATATCGCCCGACACGCA 60.279 61.111 0.00 0.00 0.00 5.24
307 308 3.702555 GCATATCGCCCGACACGC 61.703 66.667 0.00 0.00 32.94 5.34
318 319 1.060713 CAACGACGATCGGGCATATC 58.939 55.000 20.98 5.56 45.59 1.63
319 320 0.671796 TCAACGACGATCGGGCATAT 59.328 50.000 20.98 0.00 45.59 1.78
320 321 0.671796 ATCAACGACGATCGGGCATA 59.328 50.000 20.98 0.23 45.59 3.14
321 322 0.597637 GATCAACGACGATCGGGCAT 60.598 55.000 20.98 0.00 45.59 4.40
322 323 1.226859 GATCAACGACGATCGGGCA 60.227 57.895 20.98 0.00 45.59 5.36
323 324 0.309922 TAGATCAACGACGATCGGGC 59.690 55.000 20.98 10.07 45.59 6.13
324 325 2.991434 ATAGATCAACGACGATCGGG 57.009 50.000 20.98 13.29 45.59 5.14
325 326 4.321217 GCTTTATAGATCAACGACGATCGG 59.679 45.833 20.98 4.82 45.59 4.18
326 327 5.147865 AGCTTTATAGATCAACGACGATCG 58.852 41.667 14.88 14.88 45.39 3.69
327 328 6.994868 AAGCTTTATAGATCAACGACGATC 57.005 37.500 0.00 9.79 41.85 3.69
328 329 6.292381 GCAAAGCTTTATAGATCAACGACGAT 60.292 38.462 12.25 0.00 0.00 3.73
329 330 5.005394 GCAAAGCTTTATAGATCAACGACGA 59.995 40.000 12.25 0.00 0.00 4.20
330 331 5.005779 AGCAAAGCTTTATAGATCAACGACG 59.994 40.000 12.25 0.00 33.89 5.12
331 332 6.351327 AGCAAAGCTTTATAGATCAACGAC 57.649 37.500 12.25 0.00 33.89 4.34
364 365 5.872070 TGTTCACCGCAAAGATTTTCTTTTT 59.128 32.000 0.00 0.00 43.62 1.94
365 366 5.415221 TGTTCACCGCAAAGATTTTCTTTT 58.585 33.333 0.00 0.00 43.62 2.27
366 367 5.004922 TGTTCACCGCAAAGATTTTCTTT 57.995 34.783 0.00 0.00 46.75 2.52
367 368 4.647424 TGTTCACCGCAAAGATTTTCTT 57.353 36.364 0.00 0.00 38.59 2.52
368 369 4.647424 TTGTTCACCGCAAAGATTTTCT 57.353 36.364 0.00 0.00 0.00 2.52
369 370 5.710613 TTTTGTTCACCGCAAAGATTTTC 57.289 34.783 0.00 0.00 37.18 2.29
396 397 8.173412 GGGAAAGATTAGGGAAAGATATCCATT 58.827 37.037 0.00 0.00 41.55 3.16
397 398 7.522529 AGGGAAAGATTAGGGAAAGATATCCAT 59.477 37.037 0.00 0.00 41.55 3.41
398 399 6.857222 AGGGAAAGATTAGGGAAAGATATCCA 59.143 38.462 0.00 0.00 41.55 3.41
399 400 7.336475 AGGGAAAGATTAGGGAAAGATATCC 57.664 40.000 0.00 0.00 38.86 2.59
409 410 9.807921 TGCTTTATTATTAGGGAAAGATTAGGG 57.192 33.333 0.00 0.00 31.83 3.53
412 413 9.280174 CCGTGCTTTATTATTAGGGAAAGATTA 57.720 33.333 0.00 0.00 31.83 1.75
413 414 7.996644 TCCGTGCTTTATTATTAGGGAAAGATT 59.003 33.333 0.00 0.00 31.83 2.40
418 419 7.284074 TCAATCCGTGCTTTATTATTAGGGAA 58.716 34.615 0.00 0.00 0.00 3.97
486 487 4.035792 CGGGTTGAATACACTGAAACACAA 59.964 41.667 0.00 0.00 0.00 3.33
572 574 2.683211 TGGAGATCGAGATGGGATCA 57.317 50.000 0.00 0.00 42.16 2.92
948 1123 1.010793 AGAGAGAGAGAGGGAGGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
1081 1799 4.473559 CACTATACAGGGAAAAGGGGAAGA 59.526 45.833 0.00 0.00 0.00 2.87
1206 2141 2.738213 AAACCGAGGGACAGCAGCAG 62.738 60.000 0.00 0.00 0.00 4.24
1376 3216 1.348775 ACAAGGGATAGAGCAGGCCC 61.349 60.000 0.00 0.00 41.00 5.80
1441 3281 1.318576 CGTTGGCTCCCTTTTGAACT 58.681 50.000 0.00 0.00 0.00 3.01
1524 3481 3.655211 CCTGCCTGGCTGTTCCCT 61.655 66.667 21.03 0.00 0.00 4.20
1542 4683 3.691342 CCTCCACGCTTCACCGGA 61.691 66.667 9.46 0.00 0.00 5.14
1559 4700 3.570559 CTCTTGAGGTTCTTGTCGACTC 58.429 50.000 17.92 4.41 0.00 3.36
1560 4701 2.297597 CCTCTTGAGGTTCTTGTCGACT 59.702 50.000 17.92 0.00 0.00 4.18
1578 4894 8.954350 TGATACTGTTAGTTGAGTTACTACCTC 58.046 37.037 0.00 0.00 30.62 3.85
1580 4896 8.738106 AGTGATACTGTTAGTTGAGTTACTACC 58.262 37.037 0.00 0.00 30.62 3.18
1601 4980 4.139786 ACTCACACAAGATGCAAAGTGAT 58.860 39.130 15.18 1.35 35.70 3.06
1611 4997 7.497595 TGAACAAGTAGTAACTCACACAAGAT 58.502 34.615 0.00 0.00 33.75 2.40
1612 4998 6.869695 TGAACAAGTAGTAACTCACACAAGA 58.130 36.000 0.00 0.00 33.75 3.02
1613 4999 7.438160 TGATGAACAAGTAGTAACTCACACAAG 59.562 37.037 0.00 0.00 33.75 3.16
1640 5026 5.529430 ACCAAGATCAGTAGTGATAGACGAG 59.471 44.000 13.11 3.70 43.92 4.18
1666 5052 2.027625 CGACTTCCGCACCCTGAAC 61.028 63.158 0.00 0.00 0.00 3.18
1667 5053 2.342279 CGACTTCCGCACCCTGAA 59.658 61.111 0.00 0.00 0.00 3.02
1726 5112 3.578688 GTTGTTTCCAAGATGACCATGC 58.421 45.455 0.00 0.00 0.00 4.06
1779 5739 4.189231 AGGCCAACGATGTAATGTAACTC 58.811 43.478 5.01 0.00 0.00 3.01
1931 5891 4.750098 TGACTTTCGAACAGAGAAATGGTC 59.250 41.667 0.00 4.95 37.04 4.02
2119 6079 9.724839 TTGTTATTGTTTCCGAAGTTTTTAGAG 57.275 29.630 0.00 0.00 0.00 2.43
2124 6084 7.201574 GGCTTTTGTTATTGTTTCCGAAGTTTT 60.202 33.333 0.00 0.00 0.00 2.43
2184 6144 3.723681 AGGCCTCATCAATTCTGGGATTA 59.276 43.478 0.00 0.00 0.00 1.75
2219 6179 7.009179 AGTCTAATTGAACATTCCTGTGAGA 57.991 36.000 0.00 0.00 35.22 3.27
2257 6229 7.716799 TTTCCAATAGCTTGTATTCCACAAT 57.283 32.000 0.00 0.00 45.96 2.71
2280 6252 4.281688 ACACTCATAAGGCAAGTGCAAATT 59.718 37.500 5.52 0.00 43.30 1.82
2384 8433 4.892934 ACTATTGAGTTTGGTGAAAGGCAA 59.107 37.500 0.00 0.00 28.61 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.