Multiple sequence alignment - TraesCS7D01G113500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G113500 chr7D 100.000 3437 0 0 1 3437 69664508 69661072 0.000000e+00 6348.0
1 TraesCS7D01G113500 chr7D 93.625 251 13 3 346 593 369463279 369463529 4.190000e-99 372.0
2 TraesCS7D01G113500 chr7D 92.218 257 16 4 346 599 208291174 208291429 9.070000e-96 361.0
3 TraesCS7D01G113500 chr7D 87.791 172 16 4 3239 3410 69818755 69818589 2.710000e-46 196.0
4 TraesCS7D01G113500 chr7D 87.719 171 16 4 3245 3415 71547810 71547645 9.730000e-46 195.0
5 TraesCS7D01G113500 chr7D 82.741 197 26 4 2881 3077 71345272 71345460 5.900000e-38 169.0
6 TraesCS7D01G113500 chr7D 80.882 204 29 6 2881 3082 72169541 72169736 5.940000e-33 152.0
7 TraesCS7D01G113500 chr7A 91.663 2219 149 21 823 3026 76195573 76193376 0.000000e+00 3040.0
8 TraesCS7D01G113500 chr7A 88.468 633 55 8 2096 2716 76368946 76368320 0.000000e+00 749.0
9 TraesCS7D01G113500 chr7A 97.826 184 4 0 3239 3422 76192831 76192648 5.540000e-83 318.0
10 TraesCS7D01G113500 chr7A 91.667 216 15 1 1885 2100 76371005 76370793 2.590000e-76 296.0
11 TraesCS7D01G113500 chr7A 98.125 160 3 0 3078 3237 76193103 76192944 2.610000e-71 279.0
12 TraesCS7D01G113500 chr7A 91.099 191 15 2 592 781 159677205 159677394 1.220000e-64 257.0
13 TraesCS7D01G113500 chr7A 87.791 172 16 4 3239 3410 76489536 76489370 2.710000e-46 196.0
14 TraesCS7D01G113500 chr7A 86.364 176 19 4 3239 3414 76501228 76501058 1.630000e-43 187.0
15 TraesCS7D01G113500 chr7A 80.676 207 30 6 2881 3085 76515558 76515360 5.940000e-33 152.0
16 TraesCS7D01G113500 chr7A 80.392 204 30 7 2881 3082 76942207 76942012 2.760000e-31 147.0
17 TraesCS7D01G113500 chr7B 91.613 1860 126 7 997 2830 12195148 12193293 0.000000e+00 2543.0
18 TraesCS7D01G113500 chr7B 92.935 184 8 1 3239 3422 12184338 12184160 2.630000e-66 263.0
19 TraesCS7D01G113500 chr7B 88.202 178 16 4 2866 3043 12193295 12193123 1.250000e-49 207.0
20 TraesCS7D01G113500 chr7B 87.791 172 16 4 3239 3410 12398270 12398104 2.710000e-46 196.0
21 TraesCS7D01G113500 chr7B 86.364 176 19 4 3239 3414 12409310 12409140 1.630000e-43 187.0
22 TraesCS7D01G113500 chr7B 86.550 171 18 4 3245 3415 14067605 14067440 2.110000e-42 183.0
23 TraesCS7D01G113500 chr7B 82.843 204 25 6 2881 3082 13116816 13116621 1.270000e-39 174.0
24 TraesCS7D01G113500 chr1D 92.913 254 17 1 349 601 448103381 448103128 5.420000e-98 368.0
25 TraesCS7D01G113500 chr1D 91.623 191 14 2 592 781 351251186 351250997 2.630000e-66 263.0
26 TraesCS7D01G113500 chr3A 93.173 249 15 2 345 592 83238891 83239138 7.010000e-97 364.0
27 TraesCS7D01G113500 chr3A 90.667 150 11 2 207 353 693346582 693346433 2.710000e-46 196.0
28 TraesCS7D01G113500 chr5B 92.829 251 16 2 352 601 656245626 656245377 2.520000e-96 363.0
29 TraesCS7D01G113500 chr4A 93.469 245 14 2 350 593 358871869 358872112 2.520000e-96 363.0
30 TraesCS7D01G113500 chr4A 89.542 153 12 3 205 353 631489448 631489296 1.260000e-44 191.0
31 TraesCS7D01G113500 chr4A 93.846 65 3 1 2381 2444 617933718 617933654 2.820000e-16 97.1
32 TraesCS7D01G113500 chr3D 92.800 250 15 3 346 592 563448934 563449183 3.260000e-95 359.0
33 TraesCS7D01G113500 chr3D 90.062 161 12 3 197 353 556939806 556939966 4.500000e-49 206.0
34 TraesCS7D01G113500 chr3D 89.610 154 12 2 203 353 427777172 427777020 3.500000e-45 193.0
35 TraesCS7D01G113500 chr2D 91.797 256 18 2 350 604 474745027 474745280 1.520000e-93 353.0
36 TraesCS7D01G113500 chr6D 91.120 259 20 3 337 592 384535072 384535330 7.060000e-92 348.0
37 TraesCS7D01G113500 chr1A 92.670 191 12 2 592 781 101794985 101795174 1.220000e-69 274.0
38 TraesCS7D01G113500 chr1A 92.147 191 13 2 592 781 302930925 302930736 5.650000e-68 268.0
39 TraesCS7D01G113500 chr1A 92.763 152 8 3 205 353 555952021 555952172 2.080000e-52 217.0
40 TraesCS7D01G113500 chr1A 92.715 151 8 3 206 353 302931075 302930925 7.470000e-52 215.0
41 TraesCS7D01G113500 chr1A 91.447 152 10 3 205 353 555952719 555952870 4.500000e-49 206.0
42 TraesCS7D01G113500 chr1A 91.447 152 10 3 205 353 555953137 555953288 4.500000e-49 206.0
43 TraesCS7D01G113500 chr1A 90.132 152 12 1 205 353 555952440 555952591 9.730000e-46 195.0
44 TraesCS7D01G113500 chrUn 92.147 191 13 2 592 781 475334741 475334552 5.650000e-68 268.0
45 TraesCS7D01G113500 chrUn 90.576 191 16 2 592 781 74688307 74688118 5.690000e-63 252.0
46 TraesCS7D01G113500 chrUn 80.597 201 29 6 2887 3085 84248844 84248652 2.760000e-31 147.0
47 TraesCS7D01G113500 chr6A 91.623 191 14 2 592 781 132355358 132355547 2.630000e-66 263.0
48 TraesCS7D01G113500 chr2A 91.623 191 14 2 592 781 776405098 776404909 2.630000e-66 263.0
49 TraesCS7D01G113500 chr2A 91.623 191 14 2 592 781 776430903 776430714 2.630000e-66 263.0
50 TraesCS7D01G113500 chr2B 81.643 207 28 6 2881 3085 723403273 723403075 2.740000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G113500 chr7D 69661072 69664508 3436 True 6348.000000 6348 100.000000 1 3437 1 chr7D.!!$R1 3436
1 TraesCS7D01G113500 chr7A 76192648 76195573 2925 True 1212.333333 3040 95.871333 823 3422 3 chr7A.!!$R5 2599
2 TraesCS7D01G113500 chr7A 76368320 76371005 2685 True 522.500000 749 90.067500 1885 2716 2 chr7A.!!$R6 831
3 TraesCS7D01G113500 chr7B 12193123 12195148 2025 True 1375.000000 2543 89.907500 997 3043 2 chr7B.!!$R6 2046
4 TraesCS7D01G113500 chr1A 555952021 555953288 1267 False 206.000000 217 91.447250 205 353 4 chr1A.!!$F2 148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.095073 GCCAAAATTTTCATGCCGCG 59.905 50.0 0.00 0.00 0.00 6.46 F
458 462 0.100682 ATGTCGAGCGCTCAATACGT 59.899 50.0 34.69 25.63 0.00 3.57 F
459 463 0.109458 TGTCGAGCGCTCAATACGTT 60.109 50.0 34.69 0.00 0.00 3.99 F
904 909 0.609131 GCCCACCTGTAAGCATGTGT 60.609 55.0 0.00 0.00 38.86 3.72 F
1192 1220 0.670546 CGAAATGCCTCCTGACACGT 60.671 55.0 0.00 0.00 0.00 4.49 F
2251 4574 0.906775 GGAGTATGACGGGGTGGAAA 59.093 55.0 0.00 0.00 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1149 0.515564 GACGGGAATGTGTGGAAACG 59.484 55.000 0.00 0.00 0.00 3.60 R
1396 1424 0.912006 GGGGAGAAGCTGGAGAAGGT 60.912 60.000 0.00 0.00 38.63 3.50 R
1760 1788 0.954449 CACAGAGAAGGCAGCCACAG 60.954 60.000 15.80 1.68 0.00 3.66 R
1782 1810 1.302832 AAGCTTGGCTCCGTTCCTG 60.303 57.895 0.00 0.00 38.25 3.86 R
2376 4699 1.550072 CCATCTGGTGCCCGAAAATTT 59.450 47.619 0.00 0.00 0.00 1.82 R
3416 6099 1.827681 TGAAGTCTGGACTCCGAGAG 58.172 55.000 1.33 0.00 41.58 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.435430 TCATGTACAAAATTTCATCTCCGG 57.565 37.500 0.00 0.00 0.00 5.14
38 39 5.356751 TCATGTACAAAATTTCATCTCCGGG 59.643 40.000 0.00 0.00 0.00 5.73
39 40 4.658063 TGTACAAAATTTCATCTCCGGGT 58.342 39.130 0.00 0.00 0.00 5.28
40 41 5.074115 TGTACAAAATTTCATCTCCGGGTT 58.926 37.500 0.00 0.00 0.00 4.11
41 42 4.519540 ACAAAATTTCATCTCCGGGTTG 57.480 40.909 0.00 0.00 0.00 3.77
42 43 3.253230 CAAAATTTCATCTCCGGGTTGC 58.747 45.455 0.00 0.00 0.00 4.17
43 44 2.214376 AATTTCATCTCCGGGTTGCA 57.786 45.000 0.00 0.00 0.00 4.08
44 45 2.214376 ATTTCATCTCCGGGTTGCAA 57.786 45.000 0.00 0.00 0.00 4.08
45 46 1.988293 TTTCATCTCCGGGTTGCAAA 58.012 45.000 0.00 0.00 0.00 3.68
57 58 1.822506 GTTGCAAACCTAGGTCTCCC 58.177 55.000 16.64 4.92 42.21 4.30
58 59 1.351350 GTTGCAAACCTAGGTCTCCCT 59.649 52.381 16.64 0.00 42.21 4.20
59 60 0.984230 TGCAAACCTAGGTCTCCCTG 59.016 55.000 16.64 8.96 42.67 4.45
60 61 0.393132 GCAAACCTAGGTCTCCCTGC 60.393 60.000 16.64 14.75 42.67 4.85
61 62 1.280457 CAAACCTAGGTCTCCCTGCT 58.720 55.000 16.64 0.00 42.67 4.24
62 63 2.467880 CAAACCTAGGTCTCCCTGCTA 58.532 52.381 16.64 0.00 42.67 3.49
63 64 2.162264 AACCTAGGTCTCCCTGCTAC 57.838 55.000 16.64 0.00 42.67 3.58
64 65 1.008403 ACCTAGGTCTCCCTGCTACA 58.992 55.000 9.21 0.00 42.67 2.74
65 66 1.361543 ACCTAGGTCTCCCTGCTACAA 59.638 52.381 9.21 0.00 42.67 2.41
66 67 2.022918 ACCTAGGTCTCCCTGCTACAAT 60.023 50.000 9.21 0.00 42.67 2.71
67 68 2.366916 CCTAGGTCTCCCTGCTACAATG 59.633 54.545 0.00 0.00 42.67 2.82
68 69 1.207791 AGGTCTCCCTGCTACAATGG 58.792 55.000 0.00 0.00 40.58 3.16
69 70 0.912486 GGTCTCCCTGCTACAATGGT 59.088 55.000 0.00 0.00 0.00 3.55
70 71 1.282157 GGTCTCCCTGCTACAATGGTT 59.718 52.381 0.00 0.00 0.00 3.67
71 72 2.633488 GTCTCCCTGCTACAATGGTTC 58.367 52.381 0.00 0.00 0.00 3.62
72 73 2.237392 GTCTCCCTGCTACAATGGTTCT 59.763 50.000 0.00 0.00 0.00 3.01
73 74 3.451178 GTCTCCCTGCTACAATGGTTCTA 59.549 47.826 0.00 0.00 0.00 2.10
74 75 3.706594 TCTCCCTGCTACAATGGTTCTAG 59.293 47.826 0.00 0.00 0.00 2.43
75 76 2.170607 TCCCTGCTACAATGGTTCTAGC 59.829 50.000 0.00 0.00 34.60 3.42
76 77 2.092968 CCCTGCTACAATGGTTCTAGCA 60.093 50.000 3.77 3.77 40.43 3.49
77 78 2.939103 CCTGCTACAATGGTTCTAGCAC 59.061 50.000 0.00 0.00 38.34 4.40
78 79 2.939103 CTGCTACAATGGTTCTAGCACC 59.061 50.000 4.37 4.37 38.34 5.01
79 80 2.571653 TGCTACAATGGTTCTAGCACCT 59.428 45.455 12.98 0.00 38.34 4.00
80 81 3.009033 TGCTACAATGGTTCTAGCACCTT 59.991 43.478 12.98 3.58 38.34 3.50
81 82 3.375299 GCTACAATGGTTCTAGCACCTTG 59.625 47.826 12.98 15.01 37.75 3.61
82 83 3.788227 ACAATGGTTCTAGCACCTTGA 57.212 42.857 21.33 2.56 37.75 3.02
83 84 4.098914 ACAATGGTTCTAGCACCTTGAA 57.901 40.909 21.33 2.26 37.75 2.69
84 85 4.666512 ACAATGGTTCTAGCACCTTGAAT 58.333 39.130 21.33 4.21 37.75 2.57
85 86 5.815581 ACAATGGTTCTAGCACCTTGAATA 58.184 37.500 21.33 1.34 37.75 1.75
86 87 6.245408 ACAATGGTTCTAGCACCTTGAATAA 58.755 36.000 21.33 0.74 37.75 1.40
87 88 6.375455 ACAATGGTTCTAGCACCTTGAATAAG 59.625 38.462 21.33 5.93 37.75 1.73
88 89 4.261801 TGGTTCTAGCACCTTGAATAAGC 58.738 43.478 12.98 0.00 37.75 3.09
89 90 3.628032 GGTTCTAGCACCTTGAATAAGCC 59.372 47.826 4.06 0.00 33.50 4.35
90 91 4.261801 GTTCTAGCACCTTGAATAAGCCA 58.738 43.478 0.00 0.00 29.44 4.75
91 92 4.568072 TCTAGCACCTTGAATAAGCCAA 57.432 40.909 0.00 0.00 32.40 4.52
92 93 4.917385 TCTAGCACCTTGAATAAGCCAAA 58.083 39.130 0.00 0.00 32.40 3.28
93 94 5.321102 TCTAGCACCTTGAATAAGCCAAAA 58.679 37.500 0.00 0.00 32.40 2.44
94 95 5.951747 TCTAGCACCTTGAATAAGCCAAAAT 59.048 36.000 0.00 0.00 32.40 1.82
95 96 5.488262 AGCACCTTGAATAAGCCAAAATT 57.512 34.783 0.00 0.00 32.40 1.82
96 97 5.868454 AGCACCTTGAATAAGCCAAAATTT 58.132 33.333 0.00 0.00 32.40 1.82
97 98 6.298361 AGCACCTTGAATAAGCCAAAATTTT 58.702 32.000 0.00 0.00 32.40 1.82
98 99 6.427853 AGCACCTTGAATAAGCCAAAATTTTC 59.572 34.615 0.00 0.00 32.40 2.29
99 100 6.204495 GCACCTTGAATAAGCCAAAATTTTCA 59.796 34.615 0.00 0.00 32.40 2.69
100 101 7.094677 GCACCTTGAATAAGCCAAAATTTTCAT 60.095 33.333 0.00 0.00 32.40 2.57
101 102 8.231837 CACCTTGAATAAGCCAAAATTTTCATG 58.768 33.333 0.00 0.00 32.40 3.07
102 103 7.094677 ACCTTGAATAAGCCAAAATTTTCATGC 60.095 33.333 0.00 4.62 32.40 4.06
103 104 6.740411 TGAATAAGCCAAAATTTTCATGCC 57.260 33.333 0.00 0.00 0.00 4.40
104 105 5.350914 TGAATAAGCCAAAATTTTCATGCCG 59.649 36.000 0.00 0.00 0.00 5.69
105 106 1.441738 AGCCAAAATTTTCATGCCGC 58.558 45.000 0.00 0.00 0.00 6.53
106 107 0.095073 GCCAAAATTTTCATGCCGCG 59.905 50.000 0.00 0.00 0.00 6.46
107 108 1.707632 CCAAAATTTTCATGCCGCGA 58.292 45.000 8.23 0.00 0.00 5.87
108 109 1.389784 CCAAAATTTTCATGCCGCGAC 59.610 47.619 8.23 0.00 0.00 5.19
109 110 2.057316 CAAAATTTTCATGCCGCGACA 58.943 42.857 8.23 0.48 0.00 4.35
110 111 2.430546 AAATTTTCATGCCGCGACAA 57.569 40.000 8.23 0.00 0.00 3.18
111 112 2.652941 AATTTTCATGCCGCGACAAT 57.347 40.000 8.23 0.00 0.00 2.71
112 113 2.652941 ATTTTCATGCCGCGACAATT 57.347 40.000 8.23 0.00 0.00 2.32
113 114 3.773860 ATTTTCATGCCGCGACAATTA 57.226 38.095 8.23 0.00 0.00 1.40
114 115 3.560902 TTTTCATGCCGCGACAATTAA 57.439 38.095 8.23 0.00 0.00 1.40
115 116 3.560902 TTTCATGCCGCGACAATTAAA 57.439 38.095 8.23 1.54 0.00 1.52
116 117 3.560902 TTCATGCCGCGACAATTAAAA 57.439 38.095 8.23 0.00 0.00 1.52
117 118 3.129852 TCATGCCGCGACAATTAAAAG 57.870 42.857 8.23 0.00 0.00 2.27
118 119 2.159448 TCATGCCGCGACAATTAAAAGG 60.159 45.455 8.23 0.00 0.00 3.11
119 120 1.240256 TGCCGCGACAATTAAAAGGT 58.760 45.000 8.23 0.00 0.00 3.50
120 121 1.198178 TGCCGCGACAATTAAAAGGTC 59.802 47.619 8.23 0.00 0.00 3.85
121 122 1.198178 GCCGCGACAATTAAAAGGTCA 59.802 47.619 8.23 0.00 0.00 4.02
122 123 2.727916 GCCGCGACAATTAAAAGGTCAG 60.728 50.000 8.23 0.00 0.00 3.51
123 124 2.739913 CCGCGACAATTAAAAGGTCAGA 59.260 45.455 8.23 0.00 0.00 3.27
124 125 3.187637 CCGCGACAATTAAAAGGTCAGAA 59.812 43.478 8.23 0.00 0.00 3.02
125 126 4.319911 CCGCGACAATTAAAAGGTCAGAAA 60.320 41.667 8.23 0.00 0.00 2.52
126 127 5.209240 CGCGACAATTAAAAGGTCAGAAAA 58.791 37.500 0.00 0.00 0.00 2.29
127 128 5.339611 CGCGACAATTAAAAGGTCAGAAAAG 59.660 40.000 0.00 0.00 0.00 2.27
128 129 5.629435 GCGACAATTAAAAGGTCAGAAAAGG 59.371 40.000 0.00 0.00 0.00 3.11
129 130 5.629435 CGACAATTAAAAGGTCAGAAAAGGC 59.371 40.000 0.00 0.00 0.00 4.35
130 131 5.853936 ACAATTAAAAGGTCAGAAAAGGCC 58.146 37.500 0.00 0.00 0.00 5.19
131 132 5.365314 ACAATTAAAAGGTCAGAAAAGGCCA 59.635 36.000 5.01 0.00 0.00 5.36
132 133 6.126911 ACAATTAAAAGGTCAGAAAAGGCCAA 60.127 34.615 5.01 0.00 0.00 4.52
133 134 5.941555 TTAAAAGGTCAGAAAAGGCCAAA 57.058 34.783 5.01 0.00 0.00 3.28
134 135 6.493189 TTAAAAGGTCAGAAAAGGCCAAAT 57.507 33.333 5.01 0.00 0.00 2.32
135 136 5.372343 AAAAGGTCAGAAAAGGCCAAATT 57.628 34.783 5.01 0.00 0.00 1.82
136 137 4.607293 AAGGTCAGAAAAGGCCAAATTC 57.393 40.909 5.01 6.28 0.00 2.17
137 138 3.849527 AGGTCAGAAAAGGCCAAATTCT 58.150 40.909 5.01 8.77 33.83 2.40
138 139 4.226384 AGGTCAGAAAAGGCCAAATTCTT 58.774 39.130 5.01 0.00 31.26 2.52
139 140 4.655649 AGGTCAGAAAAGGCCAAATTCTTT 59.344 37.500 5.01 0.00 35.01 2.52
140 141 4.991056 GGTCAGAAAAGGCCAAATTCTTTC 59.009 41.667 5.01 4.06 32.68 2.62
141 142 4.991056 GTCAGAAAAGGCCAAATTCTTTCC 59.009 41.667 5.01 0.00 32.68 3.13
142 143 4.901250 TCAGAAAAGGCCAAATTCTTTCCT 59.099 37.500 5.01 0.00 32.68 3.36
143 144 6.015434 GTCAGAAAAGGCCAAATTCTTTCCTA 60.015 38.462 5.01 0.00 32.68 2.94
144 145 6.725834 TCAGAAAAGGCCAAATTCTTTCCTAT 59.274 34.615 5.01 0.00 32.68 2.57
145 146 6.815142 CAGAAAAGGCCAAATTCTTTCCTATG 59.185 38.462 5.01 0.00 32.68 2.23
146 147 6.725834 AGAAAAGGCCAAATTCTTTCCTATGA 59.274 34.615 5.01 0.00 32.68 2.15
147 148 5.921962 AAGGCCAAATTCTTTCCTATGAC 57.078 39.130 5.01 0.00 0.00 3.06
148 149 4.281657 AGGCCAAATTCTTTCCTATGACC 58.718 43.478 5.01 0.00 0.00 4.02
149 150 4.023291 GGCCAAATTCTTTCCTATGACCA 58.977 43.478 0.00 0.00 0.00 4.02
150 151 4.466015 GGCCAAATTCTTTCCTATGACCAA 59.534 41.667 0.00 0.00 0.00 3.67
151 152 5.129320 GGCCAAATTCTTTCCTATGACCAAT 59.871 40.000 0.00 0.00 0.00 3.16
152 153 6.044682 GCCAAATTCTTTCCTATGACCAATG 58.955 40.000 0.00 0.00 0.00 2.82
153 154 6.044682 CCAAATTCTTTCCTATGACCAATGC 58.955 40.000 0.00 0.00 0.00 3.56
154 155 6.351202 CCAAATTCTTTCCTATGACCAATGCA 60.351 38.462 0.00 0.00 0.00 3.96
155 156 6.855763 AATTCTTTCCTATGACCAATGCAA 57.144 33.333 0.00 0.00 0.00 4.08
156 157 7.427989 AATTCTTTCCTATGACCAATGCAAT 57.572 32.000 0.00 0.00 0.00 3.56
157 158 8.537728 AATTCTTTCCTATGACCAATGCAATA 57.462 30.769 0.00 0.00 0.00 1.90
158 159 7.953005 TTCTTTCCTATGACCAATGCAATAA 57.047 32.000 0.00 0.00 0.00 1.40
159 160 8.537728 TTCTTTCCTATGACCAATGCAATAAT 57.462 30.769 0.00 0.00 0.00 1.28
160 161 8.537728 TCTTTCCTATGACCAATGCAATAATT 57.462 30.769 0.00 0.00 0.00 1.40
161 162 8.980596 TCTTTCCTATGACCAATGCAATAATTT 58.019 29.630 0.00 0.00 0.00 1.82
162 163 8.945481 TTTCCTATGACCAATGCAATAATTTG 57.055 30.769 0.00 0.00 35.85 2.32
163 164 7.894753 TCCTATGACCAATGCAATAATTTGA 57.105 32.000 0.00 0.00 34.60 2.69
164 165 8.481492 TCCTATGACCAATGCAATAATTTGAT 57.519 30.769 0.00 0.00 34.60 2.57
165 166 8.926374 TCCTATGACCAATGCAATAATTTGATT 58.074 29.630 0.00 0.00 34.60 2.57
166 167 8.984764 CCTATGACCAATGCAATAATTTGATTG 58.015 33.333 0.00 0.00 39.41 2.67
167 168 9.537192 CTATGACCAATGCAATAATTTGATTGT 57.463 29.630 0.00 0.00 38.77 2.71
168 169 8.795842 ATGACCAATGCAATAATTTGATTGTT 57.204 26.923 0.00 0.00 38.77 2.83
169 170 9.887629 ATGACCAATGCAATAATTTGATTGTTA 57.112 25.926 0.00 0.00 38.77 2.41
170 171 9.887629 TGACCAATGCAATAATTTGATTGTTAT 57.112 25.926 0.00 0.00 38.77 1.89
186 187 9.717942 TTGATTGTTATAACCTTGAAAATTGGG 57.282 29.630 13.01 0.00 0.00 4.12
187 188 9.094578 TGATTGTTATAACCTTGAAAATTGGGA 57.905 29.630 13.01 0.00 0.00 4.37
188 189 9.586435 GATTGTTATAACCTTGAAAATTGGGAG 57.414 33.333 13.01 0.00 0.00 4.30
189 190 7.475137 TGTTATAACCTTGAAAATTGGGAGG 57.525 36.000 13.01 0.00 0.00 4.30
190 191 6.071051 TGTTATAACCTTGAAAATTGGGAGGC 60.071 38.462 13.01 0.00 0.00 4.70
191 192 2.702270 ACCTTGAAAATTGGGAGGCT 57.298 45.000 0.00 0.00 0.00 4.58
192 193 2.529632 ACCTTGAAAATTGGGAGGCTC 58.470 47.619 5.78 5.78 0.00 4.70
193 194 1.474077 CCTTGAAAATTGGGAGGCTCG 59.526 52.381 8.69 0.00 0.00 5.03
194 195 2.436417 CTTGAAAATTGGGAGGCTCGA 58.564 47.619 8.69 0.00 0.00 4.04
195 196 2.577606 TGAAAATTGGGAGGCTCGAA 57.422 45.000 8.69 4.20 0.00 3.71
196 197 2.159382 TGAAAATTGGGAGGCTCGAAC 58.841 47.619 8.69 1.93 0.00 3.95
197 198 2.224769 TGAAAATTGGGAGGCTCGAACT 60.225 45.455 8.69 0.00 0.00 3.01
198 199 2.586648 AAATTGGGAGGCTCGAACTT 57.413 45.000 8.69 0.00 0.00 2.66
199 200 2.586648 AATTGGGAGGCTCGAACTTT 57.413 45.000 8.69 0.00 0.00 2.66
200 201 2.586648 ATTGGGAGGCTCGAACTTTT 57.413 45.000 8.69 0.00 0.00 2.27
201 202 1.892209 TTGGGAGGCTCGAACTTTTC 58.108 50.000 8.69 0.00 0.00 2.29
202 203 1.056660 TGGGAGGCTCGAACTTTTCT 58.943 50.000 8.69 0.00 0.00 2.52
203 204 1.420138 TGGGAGGCTCGAACTTTTCTT 59.580 47.619 8.69 0.00 0.00 2.52
206 207 4.468510 TGGGAGGCTCGAACTTTTCTTATA 59.531 41.667 8.69 0.00 0.00 0.98
222 223 7.387265 TTTCTTATAACTAGATGATGCCCCA 57.613 36.000 0.00 0.00 0.00 4.96
226 227 1.665916 CTAGATGATGCCCCACGCG 60.666 63.158 3.53 3.53 42.08 6.01
227 228 2.369257 CTAGATGATGCCCCACGCGT 62.369 60.000 5.58 5.58 42.08 6.01
229 230 3.112126 GATGATGCCCCACGCGTTG 62.112 63.158 10.22 6.05 42.08 4.10
260 261 9.995003 GGGAATTGGTTGCAATATATTTCAATA 57.005 29.630 12.65 4.37 0.00 1.90
326 330 9.921637 ATGAACCAAAATCAAAAATACATACGT 57.078 25.926 0.00 0.00 0.00 3.57
382 386 8.011844 ACCAATATAAAAAGATCCAAAGAGGC 57.988 34.615 0.00 0.00 37.29 4.70
383 387 7.619302 ACCAATATAAAAAGATCCAAAGAGGCA 59.381 33.333 0.00 0.00 37.29 4.75
384 388 8.139989 CCAATATAAAAAGATCCAAAGAGGCAG 58.860 37.037 0.00 0.00 37.29 4.85
385 389 8.906867 CAATATAAAAAGATCCAAAGAGGCAGA 58.093 33.333 0.00 0.00 37.29 4.26
386 390 9.652114 AATATAAAAAGATCCAAAGAGGCAGAT 57.348 29.630 0.00 0.00 37.29 2.90
387 391 5.911378 AAAAAGATCCAAAGAGGCAGATC 57.089 39.130 0.00 0.00 37.29 2.75
388 392 4.581309 AAAGATCCAAAGAGGCAGATCA 57.419 40.909 0.00 0.00 38.06 2.92
389 393 4.581309 AAGATCCAAAGAGGCAGATCAA 57.419 40.909 0.00 0.00 38.06 2.57
390 394 4.792513 AGATCCAAAGAGGCAGATCAAT 57.207 40.909 0.00 0.00 38.06 2.57
391 395 5.126699 AGATCCAAAGAGGCAGATCAATT 57.873 39.130 0.00 0.00 38.06 2.32
392 396 6.257994 AGATCCAAAGAGGCAGATCAATTA 57.742 37.500 0.00 0.00 38.06 1.40
393 397 6.666678 AGATCCAAAGAGGCAGATCAATTAA 58.333 36.000 0.00 0.00 38.06 1.40
394 398 7.296098 AGATCCAAAGAGGCAGATCAATTAAT 58.704 34.615 0.00 0.00 38.06 1.40
395 399 6.949352 TCCAAAGAGGCAGATCAATTAATC 57.051 37.500 0.00 0.00 37.29 1.75
396 400 6.666678 TCCAAAGAGGCAGATCAATTAATCT 58.333 36.000 0.00 0.00 37.29 2.40
397 401 6.769822 TCCAAAGAGGCAGATCAATTAATCTC 59.230 38.462 0.00 0.00 37.29 2.75
398 402 6.293298 CCAAAGAGGCAGATCAATTAATCTCG 60.293 42.308 0.00 0.00 33.68 4.04
399 403 4.892433 AGAGGCAGATCAATTAATCTCGG 58.108 43.478 0.00 0.00 33.68 4.63
400 404 3.406764 AGGCAGATCAATTAATCTCGGC 58.593 45.455 0.00 6.52 33.68 5.54
401 405 2.485814 GGCAGATCAATTAATCTCGGCC 59.514 50.000 15.67 15.67 37.55 6.13
402 406 3.141398 GCAGATCAATTAATCTCGGCCA 58.859 45.455 2.24 0.00 33.68 5.36
403 407 3.755378 GCAGATCAATTAATCTCGGCCAT 59.245 43.478 2.24 0.00 33.68 4.40
404 408 4.142730 GCAGATCAATTAATCTCGGCCATC 60.143 45.833 2.24 0.00 33.68 3.51
405 409 4.999311 CAGATCAATTAATCTCGGCCATCA 59.001 41.667 2.24 0.00 33.68 3.07
406 410 5.471116 CAGATCAATTAATCTCGGCCATCAA 59.529 40.000 2.24 0.00 33.68 2.57
407 411 6.016860 CAGATCAATTAATCTCGGCCATCAAA 60.017 38.462 2.24 0.00 33.68 2.69
408 412 6.718454 AGATCAATTAATCTCGGCCATCAAAT 59.282 34.615 2.24 0.00 29.89 2.32
409 413 6.317789 TCAATTAATCTCGGCCATCAAATC 57.682 37.500 2.24 0.00 0.00 2.17
410 414 5.827267 TCAATTAATCTCGGCCATCAAATCA 59.173 36.000 2.24 0.00 0.00 2.57
411 415 6.491062 TCAATTAATCTCGGCCATCAAATCAT 59.509 34.615 2.24 0.00 0.00 2.45
412 416 7.665145 TCAATTAATCTCGGCCATCAAATCATA 59.335 33.333 2.24 0.00 0.00 2.15
413 417 8.464404 CAATTAATCTCGGCCATCAAATCATAT 58.536 33.333 2.24 0.00 0.00 1.78
414 418 7.615582 TTAATCTCGGCCATCAAATCATATC 57.384 36.000 2.24 0.00 0.00 1.63
415 419 4.622260 TCTCGGCCATCAAATCATATCA 57.378 40.909 2.24 0.00 0.00 2.15
416 420 4.971939 TCTCGGCCATCAAATCATATCAA 58.028 39.130 2.24 0.00 0.00 2.57
417 421 5.563592 TCTCGGCCATCAAATCATATCAAT 58.436 37.500 2.24 0.00 0.00 2.57
418 422 5.645067 TCTCGGCCATCAAATCATATCAATC 59.355 40.000 2.24 0.00 0.00 2.67
419 423 4.701651 TCGGCCATCAAATCATATCAATCC 59.298 41.667 2.24 0.00 0.00 3.01
420 424 4.460034 CGGCCATCAAATCATATCAATCCA 59.540 41.667 2.24 0.00 0.00 3.41
421 425 5.047872 CGGCCATCAAATCATATCAATCCAA 60.048 40.000 2.24 0.00 0.00 3.53
422 426 6.350696 CGGCCATCAAATCATATCAATCCAAT 60.351 38.462 2.24 0.00 0.00 3.16
423 427 6.816640 GGCCATCAAATCATATCAATCCAATG 59.183 38.462 0.00 0.00 0.00 2.82
424 428 7.310175 GGCCATCAAATCATATCAATCCAATGA 60.310 37.037 0.00 0.00 34.35 2.57
425 429 7.544566 GCCATCAAATCATATCAATCCAATGAC 59.455 37.037 0.00 0.00 32.74 3.06
426 430 8.033038 CCATCAAATCATATCAATCCAATGACC 58.967 37.037 0.00 0.00 32.74 4.02
427 431 8.803235 CATCAAATCATATCAATCCAATGACCT 58.197 33.333 0.00 0.00 32.74 3.85
429 433 9.511272 TCAAATCATATCAATCCAATGACCTAG 57.489 33.333 0.00 0.00 32.74 3.02
430 434 9.511272 CAAATCATATCAATCCAATGACCTAGA 57.489 33.333 0.00 0.00 32.74 2.43
431 435 9.512588 AAATCATATCAATCCAATGACCTAGAC 57.487 33.333 0.00 0.00 32.74 2.59
432 436 7.862274 TCATATCAATCCAATGACCTAGACT 57.138 36.000 0.00 0.00 30.82 3.24
433 437 7.674120 TCATATCAATCCAATGACCTAGACTG 58.326 38.462 0.00 0.00 30.82 3.51
434 438 4.142609 TCAATCCAATGACCTAGACTGC 57.857 45.455 0.00 0.00 0.00 4.40
435 439 3.776969 TCAATCCAATGACCTAGACTGCT 59.223 43.478 0.00 0.00 0.00 4.24
436 440 4.225942 TCAATCCAATGACCTAGACTGCTT 59.774 41.667 0.00 0.00 0.00 3.91
437 441 3.895232 TCCAATGACCTAGACTGCTTC 57.105 47.619 0.00 0.00 0.00 3.86
438 442 3.173151 TCCAATGACCTAGACTGCTTCA 58.827 45.455 0.00 0.00 0.00 3.02
439 443 3.582647 TCCAATGACCTAGACTGCTTCAA 59.417 43.478 0.00 0.00 0.00 2.69
440 444 4.225942 TCCAATGACCTAGACTGCTTCAAT 59.774 41.667 0.00 0.00 0.00 2.57
441 445 4.334759 CCAATGACCTAGACTGCTTCAATG 59.665 45.833 0.00 0.00 0.00 2.82
442 446 4.833478 ATGACCTAGACTGCTTCAATGT 57.167 40.909 0.00 0.00 0.00 2.71
443 447 4.193826 TGACCTAGACTGCTTCAATGTC 57.806 45.455 0.00 0.00 0.00 3.06
444 448 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
445 449 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
446 450 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
447 451 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
448 452 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
449 453 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
450 454 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
451 455 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
452 456 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
453 457 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
454 458 1.662629 CTTCAATGTCGAGCGCTCAAT 59.337 47.619 34.69 22.10 0.00 2.57
455 459 2.577449 TCAATGTCGAGCGCTCAATA 57.423 45.000 34.69 18.26 0.00 1.90
456 460 2.193447 TCAATGTCGAGCGCTCAATAC 58.807 47.619 34.69 27.26 0.00 1.89
457 461 1.071894 CAATGTCGAGCGCTCAATACG 60.072 52.381 34.69 22.24 0.00 3.06
458 462 0.100682 ATGTCGAGCGCTCAATACGT 59.899 50.000 34.69 25.63 0.00 3.57
459 463 0.109458 TGTCGAGCGCTCAATACGTT 60.109 50.000 34.69 0.00 0.00 3.99
460 464 0.989890 GTCGAGCGCTCAATACGTTT 59.010 50.000 34.69 0.00 0.00 3.60
461 465 2.179589 GTCGAGCGCTCAATACGTTTA 58.820 47.619 34.69 4.78 0.00 2.01
462 466 2.213575 GTCGAGCGCTCAATACGTTTAG 59.786 50.000 34.69 15.72 0.00 1.85
463 467 1.072089 CGAGCGCTCAATACGTTTAGC 60.072 52.381 34.69 6.02 32.48 3.09
478 482 4.459606 CGTTTAGCGTGCAGTTAATTTCA 58.540 39.130 0.00 0.00 35.54 2.69
479 483 5.086058 CGTTTAGCGTGCAGTTAATTTCAT 58.914 37.500 0.00 0.00 35.54 2.57
480 484 5.002468 CGTTTAGCGTGCAGTTAATTTCATG 59.998 40.000 0.00 0.00 35.54 3.07
481 485 5.621197 TTAGCGTGCAGTTAATTTCATGT 57.379 34.783 0.00 0.00 0.00 3.21
482 486 4.083581 AGCGTGCAGTTAATTTCATGTC 57.916 40.909 0.00 0.00 0.00 3.06
483 487 3.501828 AGCGTGCAGTTAATTTCATGTCA 59.498 39.130 0.00 0.00 0.00 3.58
484 488 4.023279 AGCGTGCAGTTAATTTCATGTCAA 60.023 37.500 0.00 0.00 0.00 3.18
485 489 4.679197 GCGTGCAGTTAATTTCATGTCAAA 59.321 37.500 0.00 0.00 0.00 2.69
486 490 5.345741 GCGTGCAGTTAATTTCATGTCAAAT 59.654 36.000 0.00 0.00 0.00 2.32
487 491 6.526325 GCGTGCAGTTAATTTCATGTCAAATA 59.474 34.615 0.00 0.00 0.00 1.40
488 492 7.220683 GCGTGCAGTTAATTTCATGTCAAATAT 59.779 33.333 0.00 0.00 0.00 1.28
489 493 9.715123 CGTGCAGTTAATTTCATGTCAAATATA 57.285 29.630 0.00 0.00 0.00 0.86
513 517 9.869757 ATAGTGCTAATCATATAATAACACGCA 57.130 29.630 0.00 0.00 0.00 5.24
514 518 8.601845 AGTGCTAATCATATAATAACACGCAA 57.398 30.769 0.00 0.00 0.00 4.85
515 519 9.051679 AGTGCTAATCATATAATAACACGCAAA 57.948 29.630 0.00 0.00 0.00 3.68
516 520 9.825972 GTGCTAATCATATAATAACACGCAAAT 57.174 29.630 0.00 0.00 0.00 2.32
541 545 9.712305 ATAATATCCTACTTAATATCCGCATGC 57.288 33.333 7.91 7.91 0.00 4.06
542 546 4.882842 TCCTACTTAATATCCGCATGCA 57.117 40.909 19.57 0.00 0.00 3.96
543 547 4.566004 TCCTACTTAATATCCGCATGCAC 58.434 43.478 19.57 0.00 0.00 4.57
544 548 4.283467 TCCTACTTAATATCCGCATGCACT 59.717 41.667 19.57 3.59 0.00 4.40
545 549 4.997395 CCTACTTAATATCCGCATGCACTT 59.003 41.667 19.57 3.39 0.00 3.16
546 550 6.014925 TCCTACTTAATATCCGCATGCACTTA 60.015 38.462 19.57 5.72 0.00 2.24
547 551 6.649141 CCTACTTAATATCCGCATGCACTTAA 59.351 38.462 19.57 11.55 0.00 1.85
548 552 7.334421 CCTACTTAATATCCGCATGCACTTAAT 59.666 37.037 19.57 5.58 0.00 1.40
549 553 6.902341 ACTTAATATCCGCATGCACTTAATG 58.098 36.000 19.57 0.00 0.00 1.90
550 554 6.486657 ACTTAATATCCGCATGCACTTAATGT 59.513 34.615 19.57 9.76 0.00 2.71
551 555 7.659799 ACTTAATATCCGCATGCACTTAATGTA 59.340 33.333 19.57 0.00 0.00 2.29
552 556 8.560355 TTAATATCCGCATGCACTTAATGTAT 57.440 30.769 19.57 1.54 33.21 2.29
553 557 7.452880 AATATCCGCATGCACTTAATGTATT 57.547 32.000 19.57 7.24 29.99 1.89
554 558 5.772825 ATCCGCATGCACTTAATGTATTT 57.227 34.783 19.57 0.00 29.99 1.40
555 559 5.574891 TCCGCATGCACTTAATGTATTTT 57.425 34.783 19.57 0.00 29.99 1.82
556 560 5.960113 TCCGCATGCACTTAATGTATTTTT 58.040 33.333 19.57 0.00 29.99 1.94
557 561 7.089770 TCCGCATGCACTTAATGTATTTTTA 57.910 32.000 19.57 0.00 29.99 1.52
558 562 7.539436 TCCGCATGCACTTAATGTATTTTTAA 58.461 30.769 19.57 0.00 29.99 1.52
559 563 8.029522 TCCGCATGCACTTAATGTATTTTTAAA 58.970 29.630 19.57 0.00 29.99 1.52
560 564 8.816144 CCGCATGCACTTAATGTATTTTTAAAT 58.184 29.630 19.57 0.00 29.99 1.40
580 584 9.678941 TTTAAATTAACGTGAATTGCATGTACA 57.321 25.926 11.72 0.00 45.80 2.90
581 585 7.561237 AAATTAACGTGAATTGCATGTACAC 57.439 32.000 11.72 0.00 45.80 2.90
582 586 5.674933 TTAACGTGAATTGCATGTACACA 57.325 34.783 0.00 0.00 45.80 3.72
583 587 4.764679 AACGTGAATTGCATGTACACAT 57.235 36.364 0.00 0.00 45.80 3.21
584 588 4.764679 ACGTGAATTGCATGTACACATT 57.235 36.364 0.00 0.00 44.72 2.71
585 589 4.475028 ACGTGAATTGCATGTACACATTG 58.525 39.130 0.00 0.00 44.72 2.82
586 590 4.215185 ACGTGAATTGCATGTACACATTGA 59.785 37.500 0.00 0.00 44.72 2.57
587 591 4.554586 CGTGAATTGCATGTACACATTGAC 59.445 41.667 0.00 0.00 33.61 3.18
588 592 5.617529 CGTGAATTGCATGTACACATTGACT 60.618 40.000 0.00 0.00 33.61 3.41
589 593 6.402011 CGTGAATTGCATGTACACATTGACTA 60.402 38.462 0.00 0.00 33.61 2.59
590 594 6.963242 GTGAATTGCATGTACACATTGACTAG 59.037 38.462 0.00 0.00 33.61 2.57
591 595 6.654582 TGAATTGCATGTACACATTGACTAGT 59.345 34.615 0.00 0.00 33.61 2.57
604 608 9.102757 ACACATTGACTAGTTGAATATAAGCTG 57.897 33.333 0.00 0.00 0.00 4.24
605 609 8.554528 CACATTGACTAGTTGAATATAAGCTGG 58.445 37.037 0.00 0.00 0.00 4.85
723 728 5.771153 CATAATTGTATGGTGATGTGGCA 57.229 39.130 0.00 0.00 34.54 4.92
724 729 6.335471 CATAATTGTATGGTGATGTGGCAT 57.665 37.500 0.00 0.00 34.54 4.40
725 730 4.659111 AATTGTATGGTGATGTGGCATG 57.341 40.909 0.00 0.00 0.00 4.06
726 731 1.391577 TGTATGGTGATGTGGCATGC 58.608 50.000 9.90 9.90 0.00 4.06
727 732 1.064537 TGTATGGTGATGTGGCATGCT 60.065 47.619 18.92 0.00 0.00 3.79
728 733 2.026641 GTATGGTGATGTGGCATGCTT 58.973 47.619 18.92 0.00 0.00 3.91
729 734 1.108776 ATGGTGATGTGGCATGCTTC 58.891 50.000 18.92 11.37 0.00 3.86
730 735 0.966875 TGGTGATGTGGCATGCTTCC 60.967 55.000 18.92 6.25 0.00 3.46
731 736 0.966875 GGTGATGTGGCATGCTTCCA 60.967 55.000 18.92 11.96 0.00 3.53
732 737 1.108776 GTGATGTGGCATGCTTCCAT 58.891 50.000 18.92 16.12 35.81 3.41
785 790 9.805204 AATCCCTTAGATTATATAGGATGTGGT 57.195 33.333 0.00 0.00 43.65 4.16
787 792 9.937876 TCCCTTAGATTATATAGGATGTGGTAG 57.062 37.037 0.00 0.00 0.00 3.18
788 793 8.643324 CCCTTAGATTATATAGGATGTGGTAGC 58.357 40.741 0.00 0.00 0.00 3.58
789 794 8.643324 CCTTAGATTATATAGGATGTGGTAGCC 58.357 40.741 0.00 0.00 34.09 3.93
790 795 8.548880 TTAGATTATATAGGATGTGGTAGCCC 57.451 38.462 0.00 0.00 34.56 5.19
791 796 6.512120 AGATTATATAGGATGTGGTAGCCCA 58.488 40.000 0.00 0.00 34.56 5.36
792 797 7.142364 AGATTATATAGGATGTGGTAGCCCAT 58.858 38.462 0.00 0.00 44.35 4.00
793 798 8.296906 AGATTATATAGGATGTGGTAGCCCATA 58.703 37.037 0.00 0.00 44.35 2.74
794 799 7.914427 TTATATAGGATGTGGTAGCCCATAG 57.086 40.000 0.00 0.00 44.35 2.23
795 800 1.059913 AGGATGTGGTAGCCCATAGC 58.940 55.000 0.00 0.00 44.35 2.97
799 804 1.904990 TGTGGTAGCCCATAGCGCAA 61.905 55.000 11.47 0.00 46.43 4.85
800 805 3.197715 TGTGGTAGCCCATAGCGCAAT 62.198 52.381 11.47 0.00 46.43 3.56
801 806 3.869737 TGTGGTAGCCCATAGCGCAATA 61.870 50.000 11.47 0.00 46.43 1.90
802 807 5.673210 TGTGGTAGCCCATAGCGCAATAG 62.673 52.174 11.47 0.00 46.43 1.73
805 810 3.006672 GCCCATAGCGCAATAGTGT 57.993 52.632 11.47 0.00 0.00 3.55
806 811 1.308998 GCCCATAGCGCAATAGTGTT 58.691 50.000 11.47 0.00 0.00 3.32
807 812 1.676006 GCCCATAGCGCAATAGTGTTT 59.324 47.619 11.47 0.00 0.00 2.83
808 813 2.099098 GCCCATAGCGCAATAGTGTTTT 59.901 45.455 11.47 0.00 0.00 2.43
809 814 3.694734 CCCATAGCGCAATAGTGTTTTG 58.305 45.455 11.47 0.00 0.00 2.44
810 815 3.128589 CCCATAGCGCAATAGTGTTTTGT 59.871 43.478 11.47 0.00 0.00 2.83
811 816 4.342772 CCATAGCGCAATAGTGTTTTGTC 58.657 43.478 11.47 0.00 0.00 3.18
812 817 4.094887 CCATAGCGCAATAGTGTTTTGTCT 59.905 41.667 11.47 0.00 0.00 3.41
813 818 5.391950 CCATAGCGCAATAGTGTTTTGTCTT 60.392 40.000 11.47 0.00 0.00 3.01
814 819 4.147219 AGCGCAATAGTGTTTTGTCTTC 57.853 40.909 11.47 0.00 0.00 2.87
815 820 3.815401 AGCGCAATAGTGTTTTGTCTTCT 59.185 39.130 11.47 0.00 0.00 2.85
816 821 4.083802 AGCGCAATAGTGTTTTGTCTTCTC 60.084 41.667 11.47 0.00 0.00 2.87
817 822 4.386230 CGCAATAGTGTTTTGTCTTCTCG 58.614 43.478 0.00 0.00 0.00 4.04
818 823 4.084537 CGCAATAGTGTTTTGTCTTCTCGT 60.085 41.667 0.00 0.00 0.00 4.18
819 824 5.140177 GCAATAGTGTTTTGTCTTCTCGTG 58.860 41.667 0.00 0.00 0.00 4.35
820 825 5.050363 GCAATAGTGTTTTGTCTTCTCGTGA 60.050 40.000 0.00 0.00 0.00 4.35
821 826 6.347725 GCAATAGTGTTTTGTCTTCTCGTGAT 60.348 38.462 0.00 0.00 0.00 3.06
837 842 6.687604 TCTCGTGATTCTCTCAACAACAATA 58.312 36.000 0.00 0.00 35.07 1.90
900 905 2.683475 GGGCCCACCTGTAAGCAT 59.317 61.111 19.95 0.00 35.85 3.79
901 906 1.754234 GGGCCCACCTGTAAGCATG 60.754 63.158 19.95 0.00 35.85 4.06
902 907 1.000896 GGCCCACCTGTAAGCATGT 60.001 57.895 0.00 0.00 0.00 3.21
903 908 1.315257 GGCCCACCTGTAAGCATGTG 61.315 60.000 0.00 0.00 39.77 3.21
904 909 0.609131 GCCCACCTGTAAGCATGTGT 60.609 55.000 0.00 0.00 38.86 3.72
905 910 1.909700 CCCACCTGTAAGCATGTGTT 58.090 50.000 0.00 0.00 38.86 3.32
906 911 2.238521 CCCACCTGTAAGCATGTGTTT 58.761 47.619 0.00 0.00 38.86 2.83
907 912 2.228822 CCCACCTGTAAGCATGTGTTTC 59.771 50.000 0.00 0.00 38.86 2.78
908 913 2.095768 CCACCTGTAAGCATGTGTTTCG 60.096 50.000 0.00 0.00 38.86 3.46
909 914 2.548057 CACCTGTAAGCATGTGTTTCGT 59.452 45.455 0.00 0.00 36.77 3.85
910 915 2.806244 ACCTGTAAGCATGTGTTTCGTC 59.194 45.455 0.00 0.00 0.00 4.20
911 916 2.805671 CCTGTAAGCATGTGTTTCGTCA 59.194 45.455 0.00 0.00 0.00 4.35
912 917 3.120546 CCTGTAAGCATGTGTTTCGTCAG 60.121 47.826 0.00 0.00 0.00 3.51
913 918 3.723260 TGTAAGCATGTGTTTCGTCAGA 58.277 40.909 0.00 0.00 0.00 3.27
914 919 3.740832 TGTAAGCATGTGTTTCGTCAGAG 59.259 43.478 0.00 0.00 0.00 3.35
915 920 2.820059 AGCATGTGTTTCGTCAGAGA 57.180 45.000 0.00 0.00 0.00 3.10
916 921 3.325293 AGCATGTGTTTCGTCAGAGAT 57.675 42.857 0.00 0.00 0.00 2.75
917 922 4.456280 AGCATGTGTTTCGTCAGAGATA 57.544 40.909 0.00 0.00 0.00 1.98
918 923 4.177026 AGCATGTGTTTCGTCAGAGATAC 58.823 43.478 0.00 0.00 0.00 2.24
919 924 3.000674 GCATGTGTTTCGTCAGAGATACG 60.001 47.826 0.00 0.00 41.64 3.06
920 925 4.412207 CATGTGTTTCGTCAGAGATACGA 58.588 43.478 0.00 0.00 46.82 3.43
955 960 2.496871 CTCAACTCTCTGCATCTCACCT 59.503 50.000 0.00 0.00 0.00 4.00
989 1017 2.500098 TCCCAACTCTTTCCGTATCCTG 59.500 50.000 0.00 0.00 0.00 3.86
1023 1051 4.477975 GGAGCTCCGGTCGTGACG 62.478 72.222 19.06 0.00 0.00 4.35
1192 1220 0.670546 CGAAATGCCTCCTGACACGT 60.671 55.000 0.00 0.00 0.00 4.49
1197 1225 2.029844 GCCTCCTGACACGTCAAGC 61.030 63.158 0.92 0.00 39.39 4.01
1425 1453 3.296709 CTTCTCCCCCGACGGTGTG 62.297 68.421 13.94 4.85 0.00 3.82
1427 1455 3.760035 CTCCCCCGACGGTGTGAG 61.760 72.222 13.94 11.19 0.00 3.51
1430 1458 3.075005 CCCCGACGGTGTGAGGAT 61.075 66.667 13.94 0.00 0.00 3.24
1435 1463 4.082523 ACGGTGTGAGGATGGGCG 62.083 66.667 0.00 0.00 0.00 6.13
1540 1568 1.515736 CCGAACGAAGGTCGCTACC 60.516 63.158 0.00 0.00 45.12 3.18
1548 1576 4.592426 GGTCGCTACCTTGGTGAC 57.408 61.111 0.00 1.73 43.08 3.67
1550 1578 1.445582 GTCGCTACCTTGGTGACGG 60.446 63.158 13.54 0.00 35.10 4.79
1569 1597 1.661341 GCGAGTGCTTCCTGATGAAT 58.339 50.000 0.00 0.00 38.39 2.57
1617 1645 2.419198 CCTCCCTCCGCATCTTCG 59.581 66.667 0.00 0.00 0.00 3.79
1755 1783 1.630369 TCACCTGATTCTGGGTCCAAG 59.370 52.381 13.49 0.00 32.95 3.61
1760 1788 1.168714 GATTCTGGGTCCAAGTGCAC 58.831 55.000 9.40 9.40 0.00 4.57
1782 1810 2.331132 GGCTGCCTTCTCTGTGCAC 61.331 63.158 12.43 10.75 0.00 4.57
1949 1988 2.159612 TCGTTGAGATAACAGACGACGG 60.160 50.000 0.00 0.00 39.59 4.79
1952 1991 1.201098 GAGATAACAGACGACGGCGC 61.201 60.000 12.58 3.05 42.48 6.53
2085 2375 2.928731 GCTCATCGCCAGATACTTAGGC 60.929 54.545 0.00 0.00 44.89 3.93
2128 4451 7.173218 ACGATATTTGCAAGGTTGGAGTATATG 59.827 37.037 0.00 0.00 0.00 1.78
2156 4479 4.435651 GGATTTAAGCACGAAACCTCTTCG 60.436 45.833 5.40 5.40 46.36 3.79
2175 4498 6.687604 TCTTCGATTTACTGAGATCAACACA 58.312 36.000 0.00 0.00 0.00 3.72
2178 4501 8.996024 TTCGATTTACTGAGATCAACACATTA 57.004 30.769 0.00 0.00 0.00 1.90
2251 4574 0.906775 GGAGTATGACGGGGTGGAAA 59.093 55.000 0.00 0.00 0.00 3.13
2271 4594 8.462016 GTGGAAAGCAATGTTATCTACTTCATT 58.538 33.333 0.00 0.00 0.00 2.57
2278 4601 7.365741 CAATGTTATCTACTTCATTGATGGCC 58.634 38.462 10.06 0.00 45.40 5.36
2376 4699 3.613030 TGCTGCAGATTTATCAGAGCAA 58.387 40.909 20.43 0.00 33.34 3.91
2379 4702 5.126545 TGCTGCAGATTTATCAGAGCAAAAT 59.873 36.000 20.43 0.00 33.34 1.82
2384 4707 7.274033 TGCAGATTTATCAGAGCAAAATTTTCG 59.726 33.333 0.00 0.00 31.67 3.46
2482 4818 1.760192 ATGAATCACAGAAGCCCTGC 58.240 50.000 3.85 0.00 46.81 4.85
2523 4859 4.053295 CCATGGTGTTTGCTTTTCAAGAG 58.947 43.478 2.57 0.00 35.84 2.85
2577 4914 8.284693 TGTCTGATTTGTGATTATTATGATGCG 58.715 33.333 0.00 0.00 0.00 4.73
2581 4918 6.375945 TTTGTGATTATTATGATGCGTGCT 57.624 33.333 0.00 0.00 0.00 4.40
2614 4951 8.885302 ACTGTTTTAGTACTTCGTTTTCAAAC 57.115 30.769 0.00 0.00 38.04 2.93
2808 5159 7.045126 AGCTAGTGGAGTGTTATATCTTCAC 57.955 40.000 0.00 0.00 39.65 3.18
3200 5772 5.782047 TCGAAGAGTAACGGAAATACCAAA 58.218 37.500 0.00 0.00 38.90 3.28
3217 5789 5.046910 ACCAAAAACAGCGACTGATAATG 57.953 39.130 12.77 7.00 35.18 1.90
3229 5801 5.065218 GCGACTGATAATGTTCATGGAAACT 59.935 40.000 0.00 0.00 0.00 2.66
3304 5987 7.010183 GCTGATCAAATTTCACAGAATTCATGG 59.990 37.037 8.44 0.00 0.00 3.66
3410 6093 6.597672 ACCATTTTCTTTGTGCTATCACGATA 59.402 34.615 0.00 0.00 46.01 2.92
3416 6099 7.234187 TCTTTGTGCTATCACGATATTTGTC 57.766 36.000 0.00 0.00 46.01 3.18
3417 6100 7.041721 TCTTTGTGCTATCACGATATTTGTCT 58.958 34.615 0.00 0.00 46.01 3.41
3422 6105 4.854291 GCTATCACGATATTTGTCTCTCGG 59.146 45.833 0.00 0.00 35.52 4.63
3423 6106 5.334957 GCTATCACGATATTTGTCTCTCGGA 60.335 44.000 0.00 0.00 35.52 4.55
3424 6107 4.553756 TCACGATATTTGTCTCTCGGAG 57.446 45.455 0.00 0.00 35.52 4.63
3425 6108 3.945921 TCACGATATTTGTCTCTCGGAGT 59.054 43.478 4.69 0.00 35.52 3.85
3426 6109 4.035324 TCACGATATTTGTCTCTCGGAGTC 59.965 45.833 4.69 0.00 35.52 3.36
3427 6110 3.315749 ACGATATTTGTCTCTCGGAGTCC 59.684 47.826 4.69 0.00 35.52 3.85
3428 6111 3.315470 CGATATTTGTCTCTCGGAGTCCA 59.685 47.826 10.49 0.00 0.00 4.02
3429 6112 4.555708 CGATATTTGTCTCTCGGAGTCCAG 60.556 50.000 10.49 6.15 0.00 3.86
3430 6113 2.287977 TTTGTCTCTCGGAGTCCAGA 57.712 50.000 10.49 10.15 0.00 3.86
3431 6114 1.535833 TTGTCTCTCGGAGTCCAGAC 58.464 55.000 17.41 17.41 36.57 3.51
3432 6115 0.693622 TGTCTCTCGGAGTCCAGACT 59.306 55.000 22.24 0.00 45.84 3.24
3433 6116 1.074084 TGTCTCTCGGAGTCCAGACTT 59.926 52.381 22.24 0.00 42.66 3.01
3434 6117 1.741145 GTCTCTCGGAGTCCAGACTTC 59.259 57.143 17.11 0.00 42.66 3.01
3435 6118 1.351350 TCTCTCGGAGTCCAGACTTCA 59.649 52.381 10.49 0.00 42.66 3.02
3436 6119 2.163509 CTCTCGGAGTCCAGACTTCAA 58.836 52.381 10.49 0.00 42.66 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.786898 CCGGAGATGAAATTTTGTACATGATAT 58.213 33.333 0.00 0.00 0.00 1.63
12 13 7.228507 CCCGGAGATGAAATTTTGTACATGATA 59.771 37.037 0.73 0.00 0.00 2.15
13 14 6.039717 CCCGGAGATGAAATTTTGTACATGAT 59.960 38.462 0.73 0.00 0.00 2.45
14 15 5.356751 CCCGGAGATGAAATTTTGTACATGA 59.643 40.000 0.73 0.00 0.00 3.07
15 16 5.125417 ACCCGGAGATGAAATTTTGTACATG 59.875 40.000 0.73 0.00 0.00 3.21
16 17 5.261216 ACCCGGAGATGAAATTTTGTACAT 58.739 37.500 0.73 0.00 0.00 2.29
17 18 4.658063 ACCCGGAGATGAAATTTTGTACA 58.342 39.130 0.73 0.00 0.00 2.90
18 19 5.399013 CAACCCGGAGATGAAATTTTGTAC 58.601 41.667 0.73 0.00 0.00 2.90
19 20 4.082463 GCAACCCGGAGATGAAATTTTGTA 60.082 41.667 0.73 0.00 0.00 2.41
20 21 3.306019 GCAACCCGGAGATGAAATTTTGT 60.306 43.478 0.73 0.00 0.00 2.83
21 22 3.253230 GCAACCCGGAGATGAAATTTTG 58.747 45.455 0.73 0.00 0.00 2.44
22 23 2.896685 TGCAACCCGGAGATGAAATTTT 59.103 40.909 0.73 0.00 0.00 1.82
23 24 2.524306 TGCAACCCGGAGATGAAATTT 58.476 42.857 0.73 0.00 0.00 1.82
24 25 2.214376 TGCAACCCGGAGATGAAATT 57.786 45.000 0.73 0.00 0.00 1.82
25 26 2.214376 TTGCAACCCGGAGATGAAAT 57.786 45.000 0.73 0.00 0.00 2.17
26 27 1.611491 GTTTGCAACCCGGAGATGAAA 59.389 47.619 0.73 0.00 0.00 2.69
27 28 1.243902 GTTTGCAACCCGGAGATGAA 58.756 50.000 0.73 0.00 0.00 2.57
28 29 0.608035 GGTTTGCAACCCGGAGATGA 60.608 55.000 0.73 0.00 46.12 2.92
29 30 1.883021 GGTTTGCAACCCGGAGATG 59.117 57.895 0.73 0.00 46.12 2.90
30 31 4.415783 GGTTTGCAACCCGGAGAT 57.584 55.556 0.73 0.00 46.12 2.75
51 52 2.237392 AGAACCATTGTAGCAGGGAGAC 59.763 50.000 0.00 0.00 0.00 3.36
52 53 2.551270 AGAACCATTGTAGCAGGGAGA 58.449 47.619 0.00 0.00 0.00 3.71
53 54 4.065321 CTAGAACCATTGTAGCAGGGAG 57.935 50.000 0.00 0.00 0.00 4.30
60 61 4.832248 TCAAGGTGCTAGAACCATTGTAG 58.168 43.478 22.67 4.97 43.20 2.74
61 62 4.901197 TCAAGGTGCTAGAACCATTGTA 57.099 40.909 22.67 10.15 43.20 2.41
62 63 3.788227 TCAAGGTGCTAGAACCATTGT 57.212 42.857 22.67 0.00 43.20 2.71
63 64 6.678900 GCTTATTCAAGGTGCTAGAACCATTG 60.679 42.308 22.67 20.40 43.20 2.82
64 65 5.358160 GCTTATTCAAGGTGCTAGAACCATT 59.642 40.000 22.67 10.34 43.20 3.16
65 66 4.884164 GCTTATTCAAGGTGCTAGAACCAT 59.116 41.667 22.67 7.33 43.20 3.55
66 67 4.261801 GCTTATTCAAGGTGCTAGAACCA 58.738 43.478 22.67 0.86 43.20 3.67
67 68 3.628032 GGCTTATTCAAGGTGCTAGAACC 59.372 47.826 12.63 12.63 40.85 3.62
68 69 4.261801 TGGCTTATTCAAGGTGCTAGAAC 58.738 43.478 0.00 0.00 31.96 3.01
69 70 4.568072 TGGCTTATTCAAGGTGCTAGAA 57.432 40.909 0.00 0.00 31.96 2.10
70 71 4.568072 TTGGCTTATTCAAGGTGCTAGA 57.432 40.909 0.00 0.00 31.96 2.43
71 72 5.643379 TTTTGGCTTATTCAAGGTGCTAG 57.357 39.130 0.00 0.00 31.96 3.42
72 73 6.603940 AATTTTGGCTTATTCAAGGTGCTA 57.396 33.333 0.00 0.00 31.96 3.49
73 74 5.488262 AATTTTGGCTTATTCAAGGTGCT 57.512 34.783 0.00 0.00 31.96 4.40
74 75 6.204495 TGAAAATTTTGGCTTATTCAAGGTGC 59.796 34.615 8.47 0.00 31.96 5.01
75 76 7.727331 TGAAAATTTTGGCTTATTCAAGGTG 57.273 32.000 8.47 0.00 31.96 4.00
76 77 7.094677 GCATGAAAATTTTGGCTTATTCAAGGT 60.095 33.333 8.47 0.00 31.37 3.50
77 78 7.245604 GCATGAAAATTTTGGCTTATTCAAGG 58.754 34.615 8.47 0.00 31.37 3.61
78 79 7.245604 GGCATGAAAATTTTGGCTTATTCAAG 58.754 34.615 8.47 0.00 33.51 3.02
79 80 6.128336 CGGCATGAAAATTTTGGCTTATTCAA 60.128 34.615 8.47 0.00 34.08 2.69
80 81 5.350914 CGGCATGAAAATTTTGGCTTATTCA 59.649 36.000 8.47 0.00 34.08 2.57
81 82 5.727515 GCGGCATGAAAATTTTGGCTTATTC 60.728 40.000 8.47 0.00 34.08 1.75
82 83 4.094739 GCGGCATGAAAATTTTGGCTTATT 59.905 37.500 8.47 0.00 34.08 1.40
83 84 3.622612 GCGGCATGAAAATTTTGGCTTAT 59.377 39.130 8.47 0.00 34.08 1.73
84 85 2.999355 GCGGCATGAAAATTTTGGCTTA 59.001 40.909 8.47 0.00 34.08 3.09
85 86 1.805943 GCGGCATGAAAATTTTGGCTT 59.194 42.857 8.47 0.00 34.08 4.35
86 87 1.441738 GCGGCATGAAAATTTTGGCT 58.558 45.000 8.47 0.00 34.08 4.75
87 88 0.095073 CGCGGCATGAAAATTTTGGC 59.905 50.000 8.47 8.96 0.00 4.52
88 89 1.389784 GTCGCGGCATGAAAATTTTGG 59.610 47.619 5.47 0.00 0.00 3.28
89 90 2.057316 TGTCGCGGCATGAAAATTTTG 58.943 42.857 10.57 0.00 0.00 2.44
90 91 2.430546 TGTCGCGGCATGAAAATTTT 57.569 40.000 10.57 2.28 0.00 1.82
91 92 2.430546 TTGTCGCGGCATGAAAATTT 57.569 40.000 16.97 0.00 0.00 1.82
92 93 2.652941 ATTGTCGCGGCATGAAAATT 57.347 40.000 16.97 0.00 0.00 1.82
93 94 2.652941 AATTGTCGCGGCATGAAAAT 57.347 40.000 16.97 0.27 0.00 1.82
94 95 3.560902 TTAATTGTCGCGGCATGAAAA 57.439 38.095 16.97 0.00 0.00 2.29
95 96 3.560902 TTTAATTGTCGCGGCATGAAA 57.439 38.095 16.97 12.59 0.00 2.69
96 97 3.497118 CTTTTAATTGTCGCGGCATGAA 58.503 40.909 16.97 6.26 0.00 2.57
97 98 2.159448 CCTTTTAATTGTCGCGGCATGA 60.159 45.455 16.97 0.00 0.00 3.07
98 99 2.184448 CCTTTTAATTGTCGCGGCATG 58.816 47.619 16.97 0.00 0.00 4.06
99 100 1.816224 ACCTTTTAATTGTCGCGGCAT 59.184 42.857 16.97 2.15 0.00 4.40
100 101 1.198178 GACCTTTTAATTGTCGCGGCA 59.802 47.619 10.57 10.57 0.00 5.69
101 102 1.198178 TGACCTTTTAATTGTCGCGGC 59.802 47.619 2.29 2.29 0.00 6.53
102 103 2.739913 TCTGACCTTTTAATTGTCGCGG 59.260 45.455 6.13 0.00 0.00 6.46
103 104 4.398549 TTCTGACCTTTTAATTGTCGCG 57.601 40.909 0.00 0.00 0.00 5.87
104 105 5.629435 CCTTTTCTGACCTTTTAATTGTCGC 59.371 40.000 0.00 0.00 0.00 5.19
105 106 5.629435 GCCTTTTCTGACCTTTTAATTGTCG 59.371 40.000 0.00 0.00 0.00 4.35
106 107 5.926542 GGCCTTTTCTGACCTTTTAATTGTC 59.073 40.000 0.00 0.00 0.00 3.18
107 108 5.365314 TGGCCTTTTCTGACCTTTTAATTGT 59.635 36.000 3.32 0.00 0.00 2.71
108 109 5.852827 TGGCCTTTTCTGACCTTTTAATTG 58.147 37.500 3.32 0.00 0.00 2.32
109 110 6.493189 TTGGCCTTTTCTGACCTTTTAATT 57.507 33.333 3.32 0.00 0.00 1.40
110 111 6.493189 TTTGGCCTTTTCTGACCTTTTAAT 57.507 33.333 3.32 0.00 0.00 1.40
111 112 5.941555 TTTGGCCTTTTCTGACCTTTTAA 57.058 34.783 3.32 0.00 0.00 1.52
112 113 6.326323 AGAATTTGGCCTTTTCTGACCTTTTA 59.674 34.615 3.32 0.00 0.00 1.52
113 114 5.130975 AGAATTTGGCCTTTTCTGACCTTTT 59.869 36.000 3.32 0.00 0.00 2.27
114 115 4.655649 AGAATTTGGCCTTTTCTGACCTTT 59.344 37.500 3.32 0.00 0.00 3.11
115 116 4.226384 AGAATTTGGCCTTTTCTGACCTT 58.774 39.130 3.32 0.00 0.00 3.50
116 117 3.849527 AGAATTTGGCCTTTTCTGACCT 58.150 40.909 3.32 0.00 0.00 3.85
117 118 4.607293 AAGAATTTGGCCTTTTCTGACC 57.393 40.909 3.32 0.00 30.41 4.02
118 119 4.991056 GGAAAGAATTTGGCCTTTTCTGAC 59.009 41.667 3.32 7.46 39.27 3.51
119 120 4.901250 AGGAAAGAATTTGGCCTTTTCTGA 59.099 37.500 3.32 0.00 39.27 3.27
120 121 5.219343 AGGAAAGAATTTGGCCTTTTCTG 57.781 39.130 3.32 0.00 39.27 3.02
121 122 6.725834 TCATAGGAAAGAATTTGGCCTTTTCT 59.274 34.615 3.32 6.94 39.27 2.52
122 123 6.813649 GTCATAGGAAAGAATTTGGCCTTTTC 59.186 38.462 3.32 4.49 39.27 2.29
123 124 6.295859 GGTCATAGGAAAGAATTTGGCCTTTT 60.296 38.462 3.32 0.00 39.27 2.27
124 125 5.187772 GGTCATAGGAAAGAATTTGGCCTTT 59.812 40.000 3.32 0.00 39.27 3.11
125 126 4.711846 GGTCATAGGAAAGAATTTGGCCTT 59.288 41.667 3.32 0.00 39.27 4.35
126 127 4.264352 TGGTCATAGGAAAGAATTTGGCCT 60.264 41.667 3.32 0.00 39.27 5.19
127 128 4.023291 TGGTCATAGGAAAGAATTTGGCC 58.977 43.478 0.00 0.00 39.27 5.36
128 129 5.659440 TTGGTCATAGGAAAGAATTTGGC 57.341 39.130 0.00 0.00 39.27 4.52
129 130 6.044682 GCATTGGTCATAGGAAAGAATTTGG 58.955 40.000 0.00 0.00 39.27 3.28
130 131 6.632909 TGCATTGGTCATAGGAAAGAATTTG 58.367 36.000 0.00 0.00 39.27 2.32
131 132 6.855763 TGCATTGGTCATAGGAAAGAATTT 57.144 33.333 0.00 0.00 43.98 1.82
132 133 6.855763 TTGCATTGGTCATAGGAAAGAATT 57.144 33.333 0.00 0.00 0.00 2.17
133 134 8.537728 TTATTGCATTGGTCATAGGAAAGAAT 57.462 30.769 0.00 0.00 0.00 2.40
134 135 7.953005 TTATTGCATTGGTCATAGGAAAGAA 57.047 32.000 0.00 0.00 0.00 2.52
135 136 8.537728 AATTATTGCATTGGTCATAGGAAAGA 57.462 30.769 0.00 0.00 0.00 2.52
136 137 9.037737 CAAATTATTGCATTGGTCATAGGAAAG 57.962 33.333 0.00 0.00 0.00 2.62
137 138 8.756927 TCAAATTATTGCATTGGTCATAGGAAA 58.243 29.630 0.00 0.00 36.45 3.13
138 139 8.303780 TCAAATTATTGCATTGGTCATAGGAA 57.696 30.769 0.00 0.00 36.45 3.36
139 140 7.894753 TCAAATTATTGCATTGGTCATAGGA 57.105 32.000 0.00 0.00 36.45 2.94
140 141 8.984764 CAATCAAATTATTGCATTGGTCATAGG 58.015 33.333 0.00 0.00 36.45 2.57
141 142 9.537192 ACAATCAAATTATTGCATTGGTCATAG 57.463 29.630 11.45 0.00 39.93 2.23
142 143 9.887629 AACAATCAAATTATTGCATTGGTCATA 57.112 25.926 11.45 0.00 39.93 2.15
143 144 8.795842 AACAATCAAATTATTGCATTGGTCAT 57.204 26.923 11.45 0.00 39.93 3.06
144 145 9.887629 ATAACAATCAAATTATTGCATTGGTCA 57.112 25.926 11.45 1.11 39.93 4.02
160 161 9.717942 CCCAATTTTCAAGGTTATAACAATCAA 57.282 29.630 17.16 2.19 0.00 2.57
161 162 9.094578 TCCCAATTTTCAAGGTTATAACAATCA 57.905 29.630 17.16 0.00 0.00 2.57
162 163 9.586435 CTCCCAATTTTCAAGGTTATAACAATC 57.414 33.333 17.16 0.38 0.00 2.67
163 164 8.539544 CCTCCCAATTTTCAAGGTTATAACAAT 58.460 33.333 17.16 4.63 0.00 2.71
164 165 7.526359 GCCTCCCAATTTTCAAGGTTATAACAA 60.526 37.037 17.16 2.43 0.00 2.83
165 166 6.071051 GCCTCCCAATTTTCAAGGTTATAACA 60.071 38.462 17.16 0.00 0.00 2.41
166 167 6.154534 AGCCTCCCAATTTTCAAGGTTATAAC 59.845 38.462 7.09 7.09 0.00 1.89
167 168 6.260663 AGCCTCCCAATTTTCAAGGTTATAA 58.739 36.000 0.00 0.00 0.00 0.98
168 169 5.837829 AGCCTCCCAATTTTCAAGGTTATA 58.162 37.500 0.00 0.00 0.00 0.98
169 170 4.687976 AGCCTCCCAATTTTCAAGGTTAT 58.312 39.130 0.00 0.00 0.00 1.89
170 171 4.086457 GAGCCTCCCAATTTTCAAGGTTA 58.914 43.478 0.00 0.00 0.00 2.85
171 172 2.899900 GAGCCTCCCAATTTTCAAGGTT 59.100 45.455 0.00 0.00 0.00 3.50
172 173 2.529632 GAGCCTCCCAATTTTCAAGGT 58.470 47.619 0.00 0.00 0.00 3.50
173 174 1.474077 CGAGCCTCCCAATTTTCAAGG 59.526 52.381 0.00 0.00 0.00 3.61
174 175 2.436417 TCGAGCCTCCCAATTTTCAAG 58.564 47.619 0.00 0.00 0.00 3.02
175 176 2.556622 GTTCGAGCCTCCCAATTTTCAA 59.443 45.455 0.00 0.00 0.00 2.69
176 177 2.159382 GTTCGAGCCTCCCAATTTTCA 58.841 47.619 0.00 0.00 0.00 2.69
177 178 2.437413 AGTTCGAGCCTCCCAATTTTC 58.563 47.619 0.00 0.00 0.00 2.29
178 179 2.586648 AGTTCGAGCCTCCCAATTTT 57.413 45.000 0.00 0.00 0.00 1.82
179 180 2.586648 AAGTTCGAGCCTCCCAATTT 57.413 45.000 0.00 0.00 0.00 1.82
180 181 2.586648 AAAGTTCGAGCCTCCCAATT 57.413 45.000 0.00 0.00 0.00 2.32
181 182 2.040412 AGAAAAGTTCGAGCCTCCCAAT 59.960 45.455 0.00 0.00 34.02 3.16
182 183 1.420138 AGAAAAGTTCGAGCCTCCCAA 59.580 47.619 0.00 0.00 34.02 4.12
183 184 1.056660 AGAAAAGTTCGAGCCTCCCA 58.943 50.000 0.00 0.00 34.02 4.37
184 185 2.186532 AAGAAAAGTTCGAGCCTCCC 57.813 50.000 0.00 0.00 34.02 4.30
185 186 6.107343 AGTTATAAGAAAAGTTCGAGCCTCC 58.893 40.000 0.00 0.00 34.02 4.30
186 187 8.189460 TCTAGTTATAAGAAAAGTTCGAGCCTC 58.811 37.037 0.00 0.00 34.02 4.70
187 188 8.064336 TCTAGTTATAAGAAAAGTTCGAGCCT 57.936 34.615 0.00 0.00 34.02 4.58
188 189 8.756864 CATCTAGTTATAAGAAAAGTTCGAGCC 58.243 37.037 0.00 0.00 34.02 4.70
189 190 9.517609 TCATCTAGTTATAAGAAAAGTTCGAGC 57.482 33.333 0.00 0.00 34.02 5.03
194 195 9.343539 GGGCATCATCTAGTTATAAGAAAAGTT 57.656 33.333 0.00 0.00 0.00 2.66
195 196 7.939588 GGGGCATCATCTAGTTATAAGAAAAGT 59.060 37.037 0.00 0.00 0.00 2.66
196 197 7.939039 TGGGGCATCATCTAGTTATAAGAAAAG 59.061 37.037 0.00 0.00 0.00 2.27
197 198 7.719633 GTGGGGCATCATCTAGTTATAAGAAAA 59.280 37.037 0.00 0.00 0.00 2.29
198 199 7.224297 GTGGGGCATCATCTAGTTATAAGAAA 58.776 38.462 0.00 0.00 0.00 2.52
199 200 6.518369 CGTGGGGCATCATCTAGTTATAAGAA 60.518 42.308 0.00 0.00 0.00 2.52
200 201 5.047306 CGTGGGGCATCATCTAGTTATAAGA 60.047 44.000 0.00 0.00 0.00 2.10
201 202 5.171476 CGTGGGGCATCATCTAGTTATAAG 58.829 45.833 0.00 0.00 0.00 1.73
202 203 4.562757 GCGTGGGGCATCATCTAGTTATAA 60.563 45.833 0.00 0.00 42.87 0.98
203 204 3.056107 GCGTGGGGCATCATCTAGTTATA 60.056 47.826 0.00 0.00 42.87 0.98
206 207 0.179045 GCGTGGGGCATCATCTAGTT 60.179 55.000 0.00 0.00 42.87 2.24
226 227 0.667184 CAACCAATTCCCGCAGCAAC 60.667 55.000 0.00 0.00 0.00 4.17
227 228 1.664873 CAACCAATTCCCGCAGCAA 59.335 52.632 0.00 0.00 0.00 3.91
229 230 2.125952 GCAACCAATTCCCGCAGC 60.126 61.111 0.00 0.00 0.00 5.25
356 360 9.131791 GCCTCTTTGGATCTTTTTATATTGGTA 57.868 33.333 0.00 0.00 38.35 3.25
357 361 7.619302 TGCCTCTTTGGATCTTTTTATATTGGT 59.381 33.333 0.00 0.00 38.35 3.67
358 362 8.010733 TGCCTCTTTGGATCTTTTTATATTGG 57.989 34.615 0.00 0.00 38.35 3.16
359 363 8.906867 TCTGCCTCTTTGGATCTTTTTATATTG 58.093 33.333 0.00 0.00 38.35 1.90
360 364 9.652114 ATCTGCCTCTTTGGATCTTTTTATATT 57.348 29.630 0.00 0.00 38.35 1.28
361 365 9.294614 GATCTGCCTCTTTGGATCTTTTTATAT 57.705 33.333 0.00 0.00 38.35 0.86
362 366 8.274322 TGATCTGCCTCTTTGGATCTTTTTATA 58.726 33.333 0.00 0.00 38.35 0.98
363 367 7.121382 TGATCTGCCTCTTTGGATCTTTTTAT 58.879 34.615 0.00 0.00 38.35 1.40
364 368 6.484288 TGATCTGCCTCTTTGGATCTTTTTA 58.516 36.000 0.00 0.00 38.35 1.52
365 369 5.327732 TGATCTGCCTCTTTGGATCTTTTT 58.672 37.500 0.00 0.00 38.35 1.94
366 370 4.927049 TGATCTGCCTCTTTGGATCTTTT 58.073 39.130 0.00 0.00 38.35 2.27
367 371 4.581309 TGATCTGCCTCTTTGGATCTTT 57.419 40.909 0.00 0.00 38.35 2.52
368 372 4.581309 TTGATCTGCCTCTTTGGATCTT 57.419 40.909 0.00 0.00 38.35 2.40
369 373 4.792513 ATTGATCTGCCTCTTTGGATCT 57.207 40.909 0.00 0.00 38.35 2.75
370 374 6.949352 TTAATTGATCTGCCTCTTTGGATC 57.051 37.500 0.00 0.00 38.35 3.36
371 375 7.296098 AGATTAATTGATCTGCCTCTTTGGAT 58.704 34.615 11.66 0.00 35.13 3.41
372 376 6.666678 AGATTAATTGATCTGCCTCTTTGGA 58.333 36.000 11.66 0.00 35.13 3.53
373 377 6.293298 CGAGATTAATTGATCTGCCTCTTTGG 60.293 42.308 16.78 0.00 36.54 3.28
374 378 6.293298 CCGAGATTAATTGATCTGCCTCTTTG 60.293 42.308 16.78 0.00 36.54 2.77
375 379 5.762218 CCGAGATTAATTGATCTGCCTCTTT 59.238 40.000 16.78 0.00 36.54 2.52
376 380 5.303971 CCGAGATTAATTGATCTGCCTCTT 58.696 41.667 16.78 0.00 36.54 2.85
377 381 4.802248 GCCGAGATTAATTGATCTGCCTCT 60.802 45.833 16.78 0.00 36.54 3.69
378 382 3.434984 GCCGAGATTAATTGATCTGCCTC 59.565 47.826 16.78 2.84 36.54 4.70
379 383 3.406764 GCCGAGATTAATTGATCTGCCT 58.593 45.455 16.78 0.00 36.54 4.75
380 384 2.485814 GGCCGAGATTAATTGATCTGCC 59.514 50.000 19.47 19.47 37.77 4.85
381 385 3.141398 TGGCCGAGATTAATTGATCTGC 58.859 45.455 16.78 13.96 36.54 4.26
382 386 4.999311 TGATGGCCGAGATTAATTGATCTG 59.001 41.667 16.78 9.31 36.54 2.90
383 387 5.233083 TGATGGCCGAGATTAATTGATCT 57.767 39.130 12.23 12.23 39.04 2.75
384 388 5.947228 TTGATGGCCGAGATTAATTGATC 57.053 39.130 0.00 2.02 0.00 2.92
385 389 6.491062 TGATTTGATGGCCGAGATTAATTGAT 59.509 34.615 0.00 0.00 0.00 2.57
386 390 5.827267 TGATTTGATGGCCGAGATTAATTGA 59.173 36.000 0.00 0.00 0.00 2.57
387 391 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
388 392 6.906157 ATGATTTGATGGCCGAGATTAATT 57.094 33.333 0.00 0.00 0.00 1.40
389 393 7.830697 TGATATGATTTGATGGCCGAGATTAAT 59.169 33.333 0.00 0.00 0.00 1.40
390 394 7.167535 TGATATGATTTGATGGCCGAGATTAA 58.832 34.615 0.00 0.00 0.00 1.40
391 395 6.710278 TGATATGATTTGATGGCCGAGATTA 58.290 36.000 0.00 0.00 0.00 1.75
392 396 5.563592 TGATATGATTTGATGGCCGAGATT 58.436 37.500 0.00 0.00 0.00 2.40
393 397 5.169992 TGATATGATTTGATGGCCGAGAT 57.830 39.130 0.00 0.00 0.00 2.75
394 398 4.622260 TGATATGATTTGATGGCCGAGA 57.378 40.909 0.00 0.00 0.00 4.04
395 399 5.163683 GGATTGATATGATTTGATGGCCGAG 60.164 44.000 0.00 0.00 0.00 4.63
396 400 4.701651 GGATTGATATGATTTGATGGCCGA 59.298 41.667 0.00 0.00 0.00 5.54
397 401 4.460034 TGGATTGATATGATTTGATGGCCG 59.540 41.667 0.00 0.00 0.00 6.13
398 402 5.988310 TGGATTGATATGATTTGATGGCC 57.012 39.130 0.00 0.00 0.00 5.36
399 403 7.544566 GTCATTGGATTGATATGATTTGATGGC 59.455 37.037 0.00 0.00 31.58 4.40
400 404 8.033038 GGTCATTGGATTGATATGATTTGATGG 58.967 37.037 0.00 0.00 31.58 3.51
401 405 8.803235 AGGTCATTGGATTGATATGATTTGATG 58.197 33.333 0.00 0.00 31.58 3.07
402 406 8.951614 AGGTCATTGGATTGATATGATTTGAT 57.048 30.769 0.00 0.00 31.58 2.57
403 407 9.511272 CTAGGTCATTGGATTGATATGATTTGA 57.489 33.333 0.00 0.00 31.58 2.69
404 408 9.511272 TCTAGGTCATTGGATTGATATGATTTG 57.489 33.333 0.00 0.00 31.58 2.32
405 409 9.512588 GTCTAGGTCATTGGATTGATATGATTT 57.487 33.333 0.00 0.00 31.58 2.17
406 410 8.888419 AGTCTAGGTCATTGGATTGATATGATT 58.112 33.333 0.00 0.00 31.58 2.57
407 411 8.319881 CAGTCTAGGTCATTGGATTGATATGAT 58.680 37.037 0.00 0.00 31.58 2.45
408 412 7.674120 CAGTCTAGGTCATTGGATTGATATGA 58.326 38.462 0.00 0.00 0.00 2.15
409 413 6.370994 GCAGTCTAGGTCATTGGATTGATATG 59.629 42.308 0.00 0.00 0.00 1.78
410 414 6.271857 AGCAGTCTAGGTCATTGGATTGATAT 59.728 38.462 0.00 0.00 0.00 1.63
411 415 5.604231 AGCAGTCTAGGTCATTGGATTGATA 59.396 40.000 0.00 0.00 0.00 2.15
412 416 4.411540 AGCAGTCTAGGTCATTGGATTGAT 59.588 41.667 0.00 0.00 0.00 2.57
413 417 3.776969 AGCAGTCTAGGTCATTGGATTGA 59.223 43.478 0.00 0.00 0.00 2.57
414 418 4.148128 AGCAGTCTAGGTCATTGGATTG 57.852 45.455 0.00 0.00 0.00 2.67
415 419 4.225942 TGAAGCAGTCTAGGTCATTGGATT 59.774 41.667 0.00 0.00 0.00 3.01
416 420 3.776969 TGAAGCAGTCTAGGTCATTGGAT 59.223 43.478 0.00 0.00 0.00 3.41
417 421 3.173151 TGAAGCAGTCTAGGTCATTGGA 58.827 45.455 0.00 0.00 0.00 3.53
418 422 3.616956 TGAAGCAGTCTAGGTCATTGG 57.383 47.619 0.00 0.00 0.00 3.16
419 423 4.940046 ACATTGAAGCAGTCTAGGTCATTG 59.060 41.667 0.00 0.00 0.00 2.82
420 424 5.171339 ACATTGAAGCAGTCTAGGTCATT 57.829 39.130 0.00 0.00 0.00 2.57
421 425 4.679106 CGACATTGAAGCAGTCTAGGTCAT 60.679 45.833 13.69 0.00 41.10 3.06
422 426 3.367395 CGACATTGAAGCAGTCTAGGTCA 60.367 47.826 13.69 0.00 41.10 4.02
423 427 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
424 428 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
425 429 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
426 430 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
427 431 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
428 432 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
429 433 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
430 434 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
431 435 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
432 436 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
433 437 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
434 438 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
435 439 1.725641 ATTGAGCGCTCGACATTGAA 58.274 45.000 29.30 17.27 0.00 2.69
436 440 2.193447 GTATTGAGCGCTCGACATTGA 58.807 47.619 29.30 8.49 0.00 2.57
437 441 1.071894 CGTATTGAGCGCTCGACATTG 60.072 52.381 29.30 15.29 0.00 2.82
438 442 1.200483 CGTATTGAGCGCTCGACATT 58.800 50.000 29.30 16.37 0.00 2.71
439 443 0.100682 ACGTATTGAGCGCTCGACAT 59.899 50.000 29.30 22.54 0.00 3.06
440 444 0.109458 AACGTATTGAGCGCTCGACA 60.109 50.000 29.30 16.51 0.00 4.35
441 445 0.989890 AAACGTATTGAGCGCTCGAC 59.010 50.000 29.30 24.38 0.00 4.20
442 446 2.447250 CTAAACGTATTGAGCGCTCGA 58.553 47.619 28.90 28.90 0.00 4.04
443 447 1.072089 GCTAAACGTATTGAGCGCTCG 60.072 52.381 30.75 21.89 32.38 5.03
444 448 2.629928 GCTAAACGTATTGAGCGCTC 57.370 50.000 30.42 30.42 32.38 5.03
457 461 5.856455 ACATGAAATTAACTGCACGCTAAAC 59.144 36.000 0.00 0.00 0.00 2.01
458 462 6.007936 ACATGAAATTAACTGCACGCTAAA 57.992 33.333 0.00 0.00 0.00 1.85
459 463 5.180304 TGACATGAAATTAACTGCACGCTAA 59.820 36.000 0.00 0.00 0.00 3.09
460 464 4.693095 TGACATGAAATTAACTGCACGCTA 59.307 37.500 0.00 0.00 0.00 4.26
461 465 3.501828 TGACATGAAATTAACTGCACGCT 59.498 39.130 0.00 0.00 0.00 5.07
462 466 3.820689 TGACATGAAATTAACTGCACGC 58.179 40.909 0.00 0.00 0.00 5.34
463 467 6.932901 ATTTGACATGAAATTAACTGCACG 57.067 33.333 0.00 0.00 0.00 5.34
487 491 9.869757 TGCGTGTTATTATATGATTAGCACTAT 57.130 29.630 0.00 0.00 0.00 2.12
488 492 9.699703 TTGCGTGTTATTATATGATTAGCACTA 57.300 29.630 0.00 0.00 0.00 2.74
489 493 8.601845 TTGCGTGTTATTATATGATTAGCACT 57.398 30.769 0.00 0.00 0.00 4.40
490 494 9.825972 ATTTGCGTGTTATTATATGATTAGCAC 57.174 29.630 0.00 0.00 0.00 4.40
515 519 9.712305 GCATGCGGATATTAAGTAGGATATTAT 57.288 33.333 0.00 0.00 0.00 1.28
516 520 8.700973 TGCATGCGGATATTAAGTAGGATATTA 58.299 33.333 14.09 0.00 0.00 0.98
517 521 7.495934 GTGCATGCGGATATTAAGTAGGATATT 59.504 37.037 14.09 0.00 0.00 1.28
518 522 6.986817 GTGCATGCGGATATTAAGTAGGATAT 59.013 38.462 14.09 0.00 0.00 1.63
519 523 6.154534 AGTGCATGCGGATATTAAGTAGGATA 59.845 38.462 14.09 0.00 0.00 2.59
520 524 5.046304 AGTGCATGCGGATATTAAGTAGGAT 60.046 40.000 14.09 0.00 0.00 3.24
521 525 4.283467 AGTGCATGCGGATATTAAGTAGGA 59.717 41.667 14.09 0.00 0.00 2.94
522 526 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
523 527 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
524 528 7.659799 ACATTAAGTGCATGCGGATATTAAGTA 59.340 33.333 14.09 0.00 0.00 2.24
525 529 6.486657 ACATTAAGTGCATGCGGATATTAAGT 59.513 34.615 14.09 9.84 0.00 2.24
526 530 6.902341 ACATTAAGTGCATGCGGATATTAAG 58.098 36.000 14.09 9.35 0.00 1.85
527 531 6.875948 ACATTAAGTGCATGCGGATATTAA 57.124 33.333 14.09 12.83 0.00 1.40
528 532 8.560355 AATACATTAAGTGCATGCGGATATTA 57.440 30.769 14.09 4.65 0.00 0.98
529 533 7.452880 AATACATTAAGTGCATGCGGATATT 57.547 32.000 14.09 5.62 0.00 1.28
530 534 7.452880 AAATACATTAAGTGCATGCGGATAT 57.547 32.000 14.09 0.00 0.00 1.63
531 535 6.875948 AAATACATTAAGTGCATGCGGATA 57.124 33.333 14.09 2.53 0.00 2.59
532 536 5.772825 AAATACATTAAGTGCATGCGGAT 57.227 34.783 14.09 3.59 0.00 4.18
533 537 5.574891 AAAATACATTAAGTGCATGCGGA 57.425 34.783 14.09 0.00 0.00 5.54
534 538 7.748031 TTAAAAATACATTAAGTGCATGCGG 57.252 32.000 14.09 0.00 0.00 5.69
554 558 9.678941 TGTACATGCAATTCACGTTAATTTAAA 57.321 25.926 4.97 0.00 0.00 1.52
555 559 9.119329 GTGTACATGCAATTCACGTTAATTTAA 57.881 29.630 4.97 0.00 0.00 1.52
556 560 8.290325 TGTGTACATGCAATTCACGTTAATTTA 58.710 29.630 4.97 0.00 32.55 1.40
557 561 7.142021 TGTGTACATGCAATTCACGTTAATTT 58.858 30.769 4.97 0.00 32.55 1.82
558 562 6.673106 TGTGTACATGCAATTCACGTTAATT 58.327 32.000 0.00 1.85 32.55 1.40
559 563 6.247727 TGTGTACATGCAATTCACGTTAAT 57.752 33.333 0.00 0.00 32.55 1.40
560 564 5.674933 TGTGTACATGCAATTCACGTTAA 57.325 34.783 0.00 0.00 32.55 2.01
561 565 5.871465 ATGTGTACATGCAATTCACGTTA 57.129 34.783 0.00 0.00 34.83 3.18
562 566 4.764679 ATGTGTACATGCAATTCACGTT 57.235 36.364 0.00 0.00 34.83 3.99
563 567 4.215185 TCAATGTGTACATGCAATTCACGT 59.785 37.500 0.00 0.00 36.56 4.49
564 568 4.554586 GTCAATGTGTACATGCAATTCACG 59.445 41.667 0.00 0.00 36.56 4.35
565 569 5.702865 AGTCAATGTGTACATGCAATTCAC 58.297 37.500 0.00 0.00 36.56 3.18
566 570 5.963176 AGTCAATGTGTACATGCAATTCA 57.037 34.783 0.00 0.00 36.56 2.57
567 571 7.076842 ACTAGTCAATGTGTACATGCAATTC 57.923 36.000 0.00 0.00 36.56 2.17
568 572 7.174772 TCAACTAGTCAATGTGTACATGCAATT 59.825 33.333 0.00 0.00 36.56 2.32
569 573 6.654582 TCAACTAGTCAATGTGTACATGCAAT 59.345 34.615 0.00 0.00 36.56 3.56
570 574 5.994668 TCAACTAGTCAATGTGTACATGCAA 59.005 36.000 0.00 0.00 36.56 4.08
571 575 5.546526 TCAACTAGTCAATGTGTACATGCA 58.453 37.500 0.00 0.00 36.56 3.96
572 576 6.480524 TTCAACTAGTCAATGTGTACATGC 57.519 37.500 0.00 0.00 36.56 4.06
578 582 9.102757 CAGCTTATATTCAACTAGTCAATGTGT 57.897 33.333 0.00 0.00 0.00 3.72
579 583 8.554528 CCAGCTTATATTCAACTAGTCAATGTG 58.445 37.037 0.00 0.00 0.00 3.21
580 584 8.486210 TCCAGCTTATATTCAACTAGTCAATGT 58.514 33.333 0.00 0.00 0.00 2.71
581 585 8.768955 GTCCAGCTTATATTCAACTAGTCAATG 58.231 37.037 0.00 0.00 0.00 2.82
582 586 8.486210 TGTCCAGCTTATATTCAACTAGTCAAT 58.514 33.333 0.00 0.41 0.00 2.57
583 587 7.847096 TGTCCAGCTTATATTCAACTAGTCAA 58.153 34.615 0.00 0.00 0.00 3.18
584 588 7.418337 TGTCCAGCTTATATTCAACTAGTCA 57.582 36.000 0.00 0.00 0.00 3.41
585 589 8.894768 ATTGTCCAGCTTATATTCAACTAGTC 57.105 34.615 0.00 0.00 0.00 2.59
586 590 9.988815 CTATTGTCCAGCTTATATTCAACTAGT 57.011 33.333 0.00 0.00 0.00 2.57
643 647 2.039746 TCATAAAGACCCACCACCACAG 59.960 50.000 0.00 0.00 0.00 3.66
647 651 2.024414 GCATCATAAAGACCCACCACC 58.976 52.381 0.00 0.00 0.00 4.61
678 682 8.709386 ATGGATGAGATAAGACGCATATTAAC 57.291 34.615 0.00 0.00 31.14 2.01
684 689 7.164122 ACAATTATGGATGAGATAAGACGCAT 58.836 34.615 0.00 0.00 33.43 4.73
720 725 5.772825 TTATCTTAACATGGAAGCATGCC 57.227 39.130 15.66 0.00 36.08 4.40
721 726 8.571336 ACTATTTATCTTAACATGGAAGCATGC 58.429 33.333 10.51 10.51 36.08 4.06
759 764 9.805204 ACCACATCCTATATAATCTAAGGGATT 57.195 33.333 0.00 0.00 45.53 3.01
761 766 9.937876 CTACCACATCCTATATAATCTAAGGGA 57.062 37.037 0.00 0.00 0.00 4.20
762 767 8.643324 GCTACCACATCCTATATAATCTAAGGG 58.357 40.741 0.00 0.00 0.00 3.95
763 768 8.643324 GGCTACCACATCCTATATAATCTAAGG 58.357 40.741 0.00 0.00 0.00 2.69
764 769 8.643324 GGGCTACCACATCCTATATAATCTAAG 58.357 40.741 0.00 0.00 36.50 2.18
765 770 8.126385 TGGGCTACCACATCCTATATAATCTAA 58.874 37.037 0.00 0.00 43.37 2.10
766 771 7.658260 TGGGCTACCACATCCTATATAATCTA 58.342 38.462 0.00 0.00 43.37 1.98
767 772 6.512120 TGGGCTACCACATCCTATATAATCT 58.488 40.000 0.00 0.00 43.37 2.40
768 773 6.808321 TGGGCTACCACATCCTATATAATC 57.192 41.667 0.00 0.00 43.37 1.75
783 788 1.002087 ACTATTGCGCTATGGGCTACC 59.998 52.381 18.22 0.00 42.10 3.18
784 789 2.069273 CACTATTGCGCTATGGGCTAC 58.931 52.381 18.22 0.00 42.10 3.58
785 790 1.691976 ACACTATTGCGCTATGGGCTA 59.308 47.619 18.22 1.06 42.10 3.93
786 791 0.469917 ACACTATTGCGCTATGGGCT 59.530 50.000 18.22 1.24 42.10 5.19
787 792 1.308998 AACACTATTGCGCTATGGGC 58.691 50.000 18.22 0.00 41.94 5.36
788 793 3.128589 ACAAAACACTATTGCGCTATGGG 59.871 43.478 18.22 11.42 0.00 4.00
789 794 4.094887 AGACAAAACACTATTGCGCTATGG 59.905 41.667 14.76 13.94 0.00 2.74
790 795 5.221891 AGACAAAACACTATTGCGCTATG 57.778 39.130 14.76 7.10 0.00 2.23
791 796 5.643777 AGAAGACAAAACACTATTGCGCTAT 59.356 36.000 9.73 9.73 0.00 2.97
792 797 4.994852 AGAAGACAAAACACTATTGCGCTA 59.005 37.500 9.73 0.00 0.00 4.26
793 798 3.815401 AGAAGACAAAACACTATTGCGCT 59.185 39.130 9.73 0.00 0.00 5.92
794 799 4.147219 AGAAGACAAAACACTATTGCGC 57.853 40.909 0.00 0.00 0.00 6.09
795 800 4.084537 ACGAGAAGACAAAACACTATTGCG 60.085 41.667 0.00 0.00 0.00 4.85
796 801 5.050363 TCACGAGAAGACAAAACACTATTGC 60.050 40.000 0.00 0.00 0.00 3.56
797 802 6.525121 TCACGAGAAGACAAAACACTATTG 57.475 37.500 0.00 0.00 0.00 1.90
798 803 7.657761 AGAATCACGAGAAGACAAAACACTATT 59.342 33.333 0.00 0.00 0.00 1.73
799 804 7.155328 AGAATCACGAGAAGACAAAACACTAT 58.845 34.615 0.00 0.00 0.00 2.12
800 805 6.513180 AGAATCACGAGAAGACAAAACACTA 58.487 36.000 0.00 0.00 0.00 2.74
801 806 5.360591 AGAATCACGAGAAGACAAAACACT 58.639 37.500 0.00 0.00 0.00 3.55
802 807 5.463724 AGAGAATCACGAGAAGACAAAACAC 59.536 40.000 0.00 0.00 37.82 3.32
803 808 5.601662 AGAGAATCACGAGAAGACAAAACA 58.398 37.500 0.00 0.00 37.82 2.83
804 809 5.692204 TGAGAGAATCACGAGAAGACAAAAC 59.308 40.000 0.00 0.00 37.82 2.43
805 810 5.842907 TGAGAGAATCACGAGAAGACAAAA 58.157 37.500 0.00 0.00 37.82 2.44
806 811 5.453567 TGAGAGAATCACGAGAAGACAAA 57.546 39.130 0.00 0.00 37.82 2.83
807 812 5.221244 TGTTGAGAGAATCACGAGAAGACAA 60.221 40.000 0.00 0.00 37.77 3.18
808 813 4.278419 TGTTGAGAGAATCACGAGAAGACA 59.722 41.667 0.00 0.00 37.77 3.41
809 814 4.799678 TGTTGAGAGAATCACGAGAAGAC 58.200 43.478 0.00 0.00 37.77 3.01
810 815 5.221244 TGTTGTTGAGAGAATCACGAGAAGA 60.221 40.000 0.00 0.00 37.77 2.87
811 816 4.984785 TGTTGTTGAGAGAATCACGAGAAG 59.015 41.667 0.00 0.00 37.77 2.85
812 817 4.944048 TGTTGTTGAGAGAATCACGAGAA 58.056 39.130 0.00 0.00 37.77 2.87
813 818 4.584327 TGTTGTTGAGAGAATCACGAGA 57.416 40.909 0.00 0.00 37.77 4.04
814 819 5.852738 ATTGTTGTTGAGAGAATCACGAG 57.147 39.130 0.00 0.00 37.77 4.18
815 820 7.722795 TTTATTGTTGTTGAGAGAATCACGA 57.277 32.000 0.00 0.00 37.77 4.35
816 821 8.781067 TTTTTATTGTTGTTGAGAGAATCACG 57.219 30.769 0.00 0.00 37.77 4.35
843 848 6.261826 GCTTACAGAGCCATCATGAATACTTT 59.738 38.462 0.00 0.00 46.01 2.66
844 849 5.762218 GCTTACAGAGCCATCATGAATACTT 59.238 40.000 0.00 0.00 46.01 2.24
845 850 5.303971 GCTTACAGAGCCATCATGAATACT 58.696 41.667 0.00 0.00 46.01 2.12
846 851 5.604010 GCTTACAGAGCCATCATGAATAC 57.396 43.478 0.00 0.00 46.01 1.89
862 867 2.300152 CTCAGTCTCAACCCAGCTTACA 59.700 50.000 0.00 0.00 0.00 2.41
897 902 3.000674 CGTATCTCTGACGAAACACATGC 60.001 47.826 0.00 0.00 42.98 4.06
898 903 4.412207 TCGTATCTCTGACGAAACACATG 58.588 43.478 0.00 0.00 45.74 3.21
899 904 4.696899 TCGTATCTCTGACGAAACACAT 57.303 40.909 0.00 0.00 45.74 3.21
906 911 0.818445 GCCCCTCGTATCTCTGACGA 60.818 60.000 0.00 0.00 46.49 4.20
907 912 1.655329 GCCCCTCGTATCTCTGACG 59.345 63.158 0.00 0.00 41.69 4.35
908 913 1.655329 CGCCCCTCGTATCTCTGAC 59.345 63.158 0.00 0.00 0.00 3.51
909 914 4.159266 CGCCCCTCGTATCTCTGA 57.841 61.111 0.00 0.00 0.00 3.27
918 923 3.343788 GAGAGTGACACGCCCCTCG 62.344 68.421 5.64 0.00 45.38 4.63
919 924 1.816863 TTGAGAGTGACACGCCCCTC 61.817 60.000 5.64 8.99 0.00 4.30
920 925 1.837051 TTGAGAGTGACACGCCCCT 60.837 57.895 5.64 0.00 0.00 4.79
921 926 1.668151 GTTGAGAGTGACACGCCCC 60.668 63.158 5.64 0.00 0.00 5.80
922 927 0.667792 GAGTTGAGAGTGACACGCCC 60.668 60.000 5.64 0.00 0.00 6.13
923 928 0.315568 AGAGTTGAGAGTGACACGCC 59.684 55.000 5.64 0.00 0.00 5.68
955 960 0.252558 GTTGGGAGGGGAGAGGTACA 60.253 60.000 0.00 0.00 0.00 2.90
989 1017 2.883386 GCTCCTTCCATGGATTGATCAC 59.117 50.000 17.06 4.51 35.30 3.06
1023 1051 1.006337 TTGCGGCATTGGAGTTTGC 60.006 52.632 2.28 0.00 38.14 3.68
1121 1149 0.515564 GACGGGAATGTGTGGAAACG 59.484 55.000 0.00 0.00 0.00 3.60
1192 1220 3.610791 CTGCGACGACGAGGCTTGA 62.611 63.158 12.29 0.00 42.66 3.02
1396 1424 0.912006 GGGGAGAAGCTGGAGAAGGT 60.912 60.000 0.00 0.00 38.63 3.50
1482 1510 4.717629 TCGAACGAGCCCACGCAG 62.718 66.667 0.00 0.00 37.52 5.18
1540 1568 3.414700 GCACTCGCCGTCACCAAG 61.415 66.667 0.00 0.00 0.00 3.61
1545 1573 3.303135 AGGAAGCACTCGCCGTCA 61.303 61.111 0.00 0.00 39.83 4.35
1548 1576 2.169789 CATCAGGAAGCACTCGCCG 61.170 63.158 0.00 0.00 39.83 6.46
1550 1578 1.596727 GATTCATCAGGAAGCACTCGC 59.403 52.381 0.00 0.00 41.53 5.03
1569 1597 2.118951 ACGTCCCGGGAGAAAGGA 59.881 61.111 27.72 0.00 0.00 3.36
1611 1639 1.258982 GCATCGACGAAATGCGAAGAT 59.741 47.619 7.61 0.00 44.57 2.40
1617 1645 1.062525 GTGGGCATCGACGAAATGC 59.937 57.895 13.72 13.72 46.98 3.56
1755 1783 2.908940 AAGGCAGCCACAGTGCAC 60.909 61.111 15.80 9.40 43.12 4.57
1760 1788 0.954449 CACAGAGAAGGCAGCCACAG 60.954 60.000 15.80 1.68 0.00 3.66
1782 1810 1.302832 AAGCTTGGCTCCGTTCCTG 60.303 57.895 0.00 0.00 38.25 3.86
1952 1991 2.124983 CCATCAGCCCACAGTCGG 60.125 66.667 0.00 0.00 0.00 4.79
2085 2375 4.680237 TTCCAGCTCACACCGCCG 62.680 66.667 0.00 0.00 0.00 6.46
2128 4451 3.561503 GTTTCGTGCTTAAATCCACCAC 58.438 45.455 0.00 0.00 0.00 4.16
2175 4498 5.791336 TGAAGATACAGTCGCCATCTAAT 57.209 39.130 0.00 0.00 0.00 1.73
2178 4501 3.638627 TGATGAAGATACAGTCGCCATCT 59.361 43.478 0.00 0.00 39.30 2.90
2251 4574 7.255381 GCCATCAATGAAGTAGATAACATTGCT 60.255 37.037 0.00 0.00 44.89 3.91
2278 4601 4.617959 CCATTTTTAGCATGGCAGAGATG 58.382 43.478 0.00 0.00 34.98 2.90
2308 4631 9.208022 TCTCAAGTTGTACATGAACTTATCAAG 57.792 33.333 10.35 7.07 40.83 3.02
2376 4699 1.550072 CCATCTGGTGCCCGAAAATTT 59.450 47.619 0.00 0.00 0.00 1.82
2379 4702 1.976474 GCCATCTGGTGCCCGAAAA 60.976 57.895 0.00 0.00 37.57 2.29
2384 4707 3.455469 GCTTGCCATCTGGTGCCC 61.455 66.667 0.00 0.00 37.57 5.36
2402 4725 3.507162 ACAACCATGTTGGACTCATCA 57.493 42.857 11.28 0.00 40.96 3.07
2500 4836 2.237393 TGAAAAGCAAACACCATGGC 57.763 45.000 13.04 0.00 0.00 4.40
2532 4868 7.598278 TCAGACAACAACATACACTTGTTTTT 58.402 30.769 0.00 0.00 39.34 1.94
2537 4873 7.166307 CACAAATCAGACAACAACATACACTTG 59.834 37.037 0.00 0.00 0.00 3.16
2538 4874 7.066887 TCACAAATCAGACAACAACATACACTT 59.933 33.333 0.00 0.00 0.00 3.16
2577 4914 8.139521 AGTACTAAAACAGTTTAAGTCAGCAC 57.860 34.615 0.00 0.00 38.80 4.40
2581 4918 8.931385 ACGAAGTACTAAAACAGTTTAAGTCA 57.069 30.769 0.00 0.00 41.94 3.41
2614 4951 6.710597 ATCAACTGATGATCCAAATGGAAG 57.289 37.500 6.18 1.51 45.91 3.46
2868 5219 6.464222 TGAAAGGCTCATCCCTAATAATACG 58.536 40.000 0.00 0.00 33.97 3.06
3200 5772 5.163723 CCATGAACATTATCAGTCGCTGTTT 60.164 40.000 0.00 0.50 31.76 2.83
3217 5789 8.383619 GCATACGATATATCAGTTTCCATGAAC 58.616 37.037 13.11 0.00 0.00 3.18
3229 5801 7.394641 ACAGAAAGAGAGGCATACGATATATCA 59.605 37.037 13.11 0.00 0.00 2.15
3237 5809 6.758886 AGAAATAACAGAAAGAGAGGCATACG 59.241 38.462 0.00 0.00 0.00 3.06
3304 5987 4.365723 CATTTTGGACATTAGCAGCCATC 58.634 43.478 0.00 0.00 0.00 3.51
3410 6093 2.494073 GTCTGGACTCCGAGAGACAAAT 59.506 50.000 1.33 0.00 35.82 2.32
3416 6099 1.827681 TGAAGTCTGGACTCCGAGAG 58.172 55.000 1.33 0.00 41.58 3.20
3417 6100 2.287977 TTGAAGTCTGGACTCCGAGA 57.712 50.000 1.33 0.00 41.58 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.