Multiple sequence alignment - TraesCS7D01G113200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G113200 chr7D 100.000 4861 0 0 1 4861 69594300 69589440 0.000000e+00 8977.0
1 TraesCS7D01G113200 chr7D 90.495 768 59 11 3498 4262 69532436 69531680 0.000000e+00 1002.0
2 TraesCS7D01G113200 chr7D 88.476 807 73 11 2611 3406 69488681 69487884 0.000000e+00 957.0
3 TraesCS7D01G113200 chr7D 85.457 832 89 15 3423 4241 69487796 69486984 0.000000e+00 837.0
4 TraesCS7D01G113200 chr7D 84.735 773 86 20 1873 2624 69581116 69580355 0.000000e+00 745.0
5 TraesCS7D01G113200 chr7D 80.506 949 111 39 3419 4312 69483806 69482877 0.000000e+00 660.0
6 TraesCS7D01G113200 chr7D 92.881 295 20 1 4471 4764 69493241 69492947 1.250000e-115 427.0
7 TraesCS7D01G113200 chr7D 100.000 29 0 0 4447 4475 69531677 69531649 2.000000e-03 54.7
8 TraesCS7D01G113200 chr7A 91.689 1468 101 13 1946 3406 76120728 76119275 0.000000e+00 2015.0
9 TraesCS7D01G113200 chr7A 92.296 1350 64 8 3419 4764 76119173 76117860 0.000000e+00 1881.0
10 TraesCS7D01G113200 chr7A 85.532 1486 110 43 1 1406 76122553 76121093 0.000000e+00 1456.0
11 TraesCS7D01G113200 chr7A 95.535 739 27 3 3419 4157 75668231 75667499 0.000000e+00 1177.0
12 TraesCS7D01G113200 chr7A 79.855 968 115 39 3419 4323 75869038 75868088 6.860000e-178 634.0
13 TraesCS7D01G113200 chr7A 79.574 940 130 36 3419 4312 75572943 75572020 2.490000e-172 616.0
14 TraesCS7D01G113200 chr7A 93.355 301 14 2 3108 3406 75668630 75668334 1.610000e-119 440.0
15 TraesCS7D01G113200 chr7B 88.134 1340 120 22 3450 4764 11957826 11956501 0.000000e+00 1557.0
16 TraesCS7D01G113200 chr7B 82.650 1268 132 48 1638 2866 11959449 11958231 0.000000e+00 1042.0
17 TraesCS7D01G113200 chr7B 85.700 1021 78 34 508 1478 11960448 11959446 0.000000e+00 1014.0
18 TraesCS7D01G113200 chr7B 82.328 1194 163 34 1638 2808 11922130 11920962 0.000000e+00 992.0
19 TraesCS7D01G113200 chr7B 84.587 824 82 19 3496 4302 11925869 11925074 0.000000e+00 776.0
20 TraesCS7D01G113200 chr7B 88.528 523 44 8 4256 4764 11918487 11917967 1.920000e-173 619.0
21 TraesCS7D01G113200 chr7B 78.991 971 114 46 3419 4323 11896151 11895205 9.070000e-162 580.0
22 TraesCS7D01G113200 chr7B 88.235 442 49 3 1797 2236 11928578 11928138 4.310000e-145 525.0
23 TraesCS7D01G113200 chr7B 85.484 434 50 7 2 424 11961037 11960606 1.610000e-119 440.0
24 TraesCS7D01G113200 chr7B 80.379 581 87 20 2234 2800 11926884 11926317 2.710000e-112 416.0
25 TraesCS7D01G113200 chr7B 86.742 264 20 8 1157 1406 11929269 11929007 3.700000e-71 279.0
26 TraesCS7D01G113200 chr7B 85.532 235 26 8 2914 3145 98979367 98979138 6.290000e-59 239.0
27 TraesCS7D01G113200 chr7B 92.553 94 7 0 4763 4856 178082800 178082893 8.490000e-28 135.0
28 TraesCS7D01G113200 chr4D 98.246 171 3 0 1476 1646 93338207 93338037 2.840000e-77 300.0
29 TraesCS7D01G113200 chr2B 97.714 175 2 2 1467 1641 174794994 174794822 2.840000e-77 300.0
30 TraesCS7D01G113200 chr2B 89.270 233 22 3 2920 3151 449827391 449827621 6.160000e-74 289.0
31 TraesCS7D01G113200 chr6D 96.685 181 3 3 1464 1641 32865154 32865334 1.020000e-76 298.0
32 TraesCS7D01G113200 chr6D 98.802 167 2 0 1477 1643 392897139 392896973 1.020000e-76 298.0
33 TraesCS7D01G113200 chr1D 96.629 178 5 1 1476 1652 196817844 196817667 1.320000e-75 294.0
34 TraesCS7D01G113200 chr1D 96.111 180 6 1 1467 1645 444346156 444346335 4.760000e-75 292.0
35 TraesCS7D01G113200 chr1D 97.590 166 4 0 1476 1641 345368844 345368679 7.960000e-73 285.0
36 TraesCS7D01G113200 chr1B 96.133 181 3 4 1464 1641 628050672 628050851 4.760000e-75 292.0
37 TraesCS7D01G113200 chr1B 80.000 270 29 8 2070 2335 623941081 623940833 5.000000e-40 176.0
38 TraesCS7D01G113200 chr6A 96.089 179 5 2 1477 1653 222571244 222571422 1.710000e-74 291.0
39 TraesCS7D01G113200 chr5D 97.674 43 1 0 4763 4805 281858611 281858653 1.880000e-09 75.0
40 TraesCS7D01G113200 chr6B 95.349 43 2 0 4762 4804 689929008 689929050 8.730000e-08 69.4
41 TraesCS7D01G113200 chr3D 95.349 43 2 0 4763 4805 164328528 164328570 8.730000e-08 69.4
42 TraesCS7D01G113200 chr3A 95.349 43 2 0 4763 4805 606031812 606031770 8.730000e-08 69.4
43 TraesCS7D01G113200 chr3A 95.238 42 2 0 4764 4805 194227274 194227315 3.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G113200 chr7D 69589440 69594300 4860 True 8977.000000 8977 100.000000 1 4861 1 chr7D.!!$R3 4860
1 TraesCS7D01G113200 chr7D 69482877 69488681 5804 True 818.000000 957 84.813000 2611 4312 3 chr7D.!!$R4 1701
2 TraesCS7D01G113200 chr7D 69580355 69581116 761 True 745.000000 745 84.735000 1873 2624 1 chr7D.!!$R2 751
3 TraesCS7D01G113200 chr7D 69531649 69532436 787 True 528.350000 1002 95.247500 3498 4475 2 chr7D.!!$R5 977
4 TraesCS7D01G113200 chr7A 76117860 76122553 4693 True 1784.000000 2015 89.839000 1 4764 3 chr7A.!!$R4 4763
5 TraesCS7D01G113200 chr7A 75667499 75668630 1131 True 808.500000 1177 94.445000 3108 4157 2 chr7A.!!$R3 1049
6 TraesCS7D01G113200 chr7A 75868088 75869038 950 True 634.000000 634 79.855000 3419 4323 1 chr7A.!!$R2 904
7 TraesCS7D01G113200 chr7A 75572020 75572943 923 True 616.000000 616 79.574000 3419 4312 1 chr7A.!!$R1 893
8 TraesCS7D01G113200 chr7B 11956501 11961037 4536 True 1013.250000 1557 85.492000 2 4764 4 chr7B.!!$R4 4762
9 TraesCS7D01G113200 chr7B 11917967 11929269 11302 True 601.166667 992 85.133167 1157 4764 6 chr7B.!!$R3 3607
10 TraesCS7D01G113200 chr7B 11895205 11896151 946 True 580.000000 580 78.991000 3419 4323 1 chr7B.!!$R1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 238 0.093705 GCTTGCTAGTCTTTGTCGCG 59.906 55.0 0.00 0.0 0.00 5.87 F
1467 1636 0.035820 GCCCCCGTGTAATCTCAACA 60.036 55.0 0.00 0.0 0.00 3.33 F
2158 2592 0.167908 TAGCGCCATTGTTTTGCTCG 59.832 50.0 2.29 0.0 37.12 5.03 F
2240 3931 0.823356 TGCTGACAAACCCTGCCTTC 60.823 55.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1858 0.386838 ACTTTGAAACTGCCTGCTGC 59.613 50.0 0.0 0.0 41.77 5.25 R
2585 4296 0.537188 CGGCACCTCCACTCTAACAT 59.463 55.0 0.0 0.0 34.01 2.71 R
3411 5172 0.692476 ACTGACTTGCTATGCCACCA 59.308 50.0 0.0 0.0 0.00 4.17 R
4172 6105 1.913778 TGGCAACTGAGTGCAATGAT 58.086 45.0 0.0 0.0 46.81 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 4.591321 TGGGCAGACCATAAGAGAAAAT 57.409 40.909 0.00 0.00 46.80 1.82
114 115 4.272489 TGGGCAGACCATAAGAGAAAATG 58.728 43.478 0.00 0.00 46.80 2.32
151 152 2.507407 TCATTTCAACCCCTACCAGC 57.493 50.000 0.00 0.00 0.00 4.85
152 153 1.707989 TCATTTCAACCCCTACCAGCA 59.292 47.619 0.00 0.00 0.00 4.41
154 155 0.404040 TTTCAACCCCTACCAGCAGG 59.596 55.000 0.00 0.00 42.21 4.85
184 185 0.886490 AGTTCTGCAAAGGTCGCCAG 60.886 55.000 0.00 0.00 0.00 4.85
189 190 1.600916 GCAAAGGTCGCCAGAGGTT 60.601 57.895 0.00 0.00 0.00 3.50
190 191 1.172812 GCAAAGGTCGCCAGAGGTTT 61.173 55.000 0.00 0.00 0.00 3.27
232 235 3.658709 AGAGTGCTTGCTAGTCTTTGTC 58.341 45.455 0.00 0.00 0.00 3.18
235 238 0.093705 GCTTGCTAGTCTTTGTCGCG 59.906 55.000 0.00 0.00 0.00 5.87
248 251 1.817357 TGTCGCGAGGAGAAGACTTA 58.183 50.000 10.24 0.00 34.92 2.24
257 260 5.517054 GCGAGGAGAAGACTTAACACAATAG 59.483 44.000 0.00 0.00 0.00 1.73
299 305 3.565764 ATCAGGCTAATAGCAGTGCAA 57.434 42.857 19.20 0.00 44.75 4.08
340 356 7.888021 ACTATTTGTCTGTAAAATGATGTCCCA 59.112 33.333 0.00 0.00 0.00 4.37
390 406 4.009675 TCACATCATTGCTACCAAGAACC 58.990 43.478 0.00 0.00 33.80 3.62
401 417 6.480763 TGCTACCAAGAACCTGATAAAATGA 58.519 36.000 0.00 0.00 0.00 2.57
476 549 6.094464 TCAACCATTGAGCAACAGATAATCAG 59.906 38.462 0.00 0.00 34.08 2.90
478 551 6.182627 ACCATTGAGCAACAGATAATCAGAA 58.817 36.000 0.00 0.00 0.00 3.02
485 558 8.963725 TGAGCAACAGATAATCAGAAAATTGAT 58.036 29.630 0.00 0.00 39.42 2.57
486 559 9.234384 GAGCAACAGATAATCAGAAAATTGATG 57.766 33.333 0.00 0.00 37.83 3.07
488 561 9.577110 GCAACAGATAATCAGAAAATTGATGAA 57.423 29.630 0.00 0.00 37.83 2.57
500 591 6.438425 AGAAAATTGATGAAAGGTAGTGGCAT 59.562 34.615 0.00 0.00 0.00 4.40
506 597 6.346096 TGATGAAAGGTAGTGGCATTAGTAC 58.654 40.000 0.00 0.00 0.00 2.73
532 623 0.250727 ACCACAACTGAATGGACCGG 60.251 55.000 0.00 0.00 39.46 5.28
533 624 0.250727 CCACAACTGAATGGACCGGT 60.251 55.000 6.92 6.92 38.34 5.28
603 694 4.500116 GCCGAGACCGTCAGAGCC 62.500 72.222 0.40 0.00 0.00 4.70
606 697 4.838486 GAGACCGTCAGAGCCGCG 62.838 72.222 0.00 0.00 0.00 6.46
669 760 3.781307 CGGAGATTGCGGGGGTCA 61.781 66.667 0.00 0.00 0.00 4.02
718 830 4.778415 CGCCGTCTGACTCGGGTG 62.778 72.222 0.00 3.00 46.90 4.61
787 908 1.434622 GCATGGGCGATGACTGACAG 61.435 60.000 14.07 0.00 33.31 3.51
788 909 0.176449 CATGGGCGATGACTGACAGA 59.824 55.000 10.08 0.00 33.31 3.41
789 910 0.176680 ATGGGCGATGACTGACAGAC 59.823 55.000 10.08 3.32 0.00 3.51
790 911 1.184970 TGGGCGATGACTGACAGACA 61.185 55.000 10.08 10.04 0.00 3.41
801 922 0.836606 TGACAGACAGAAAGGGCACA 59.163 50.000 0.00 0.00 0.00 4.57
847 973 0.309302 CAGTCAGACGCCGATAGAGG 59.691 60.000 0.00 0.00 39.76 3.69
850 976 0.106868 TCAGACGCCGATAGAGGGAA 60.107 55.000 0.00 0.00 39.76 3.97
872 1004 1.635817 GCTTGGCCCAGGAGATACCA 61.636 60.000 5.89 0.00 42.04 3.25
873 1005 0.181350 CTTGGCCCAGGAGATACCAC 59.819 60.000 0.00 0.00 42.04 4.16
874 1006 0.548926 TTGGCCCAGGAGATACCACA 60.549 55.000 0.00 0.00 42.04 4.17
875 1007 0.548926 TGGCCCAGGAGATACCACAA 60.549 55.000 0.00 0.00 42.04 3.33
920 1052 2.142761 CCTCGGGAGCCATCATCCA 61.143 63.158 0.00 0.00 38.70 3.41
921 1053 1.070445 CTCGGGAGCCATCATCCAC 59.930 63.158 0.00 0.00 38.70 4.02
922 1054 2.280389 CGGGAGCCATCATCCACG 60.280 66.667 0.00 0.00 38.70 4.94
924 1056 2.443394 GGGAGCCATCATCCACGGA 61.443 63.158 0.00 0.00 38.70 4.69
925 1057 1.227674 GGAGCCATCATCCACGGAC 60.228 63.158 0.00 0.00 36.79 4.79
988 1127 4.530857 CCGGTGCTAGGGCTTCGG 62.531 72.222 0.00 0.00 43.33 4.30
1076 1215 5.012046 TCAGCAAGAAGACCATCAAGAAGTA 59.988 40.000 0.00 0.00 0.00 2.24
1079 1218 5.391416 GCAAGAAGACCATCAAGAAGTAAGC 60.391 44.000 0.00 0.00 0.00 3.09
1080 1219 5.489792 AGAAGACCATCAAGAAGTAAGCA 57.510 39.130 0.00 0.00 0.00 3.91
1081 1220 6.059787 AGAAGACCATCAAGAAGTAAGCAT 57.940 37.500 0.00 0.00 0.00 3.79
1103 1242 0.170339 CCGTTCCCCTTTGCGATTTC 59.830 55.000 0.00 0.00 0.00 2.17
1116 1259 0.370273 CGATTTCTCGCGGTTTCCTG 59.630 55.000 6.13 0.00 38.20 3.86
1121 1264 2.027625 CTCGCGGTTTCCTGTGGTC 61.028 63.158 6.13 0.00 0.00 4.02
1122 1265 2.030562 CGCGGTTTCCTGTGGTCT 59.969 61.111 0.00 0.00 0.00 3.85
1126 1269 1.003718 GGTTTCCTGTGGTCTCGGG 60.004 63.158 0.00 0.00 35.33 5.14
1140 1285 3.554342 CGGGGCCCTGAGATGAGG 61.554 72.222 28.28 0.00 0.00 3.86
1169 1314 1.134877 GGTCGGCTTAGGTACAAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
1194 1341 4.388499 TGGACCCGCGGAAGAAGC 62.388 66.667 30.73 8.52 0.00 3.86
1267 1428 0.830023 GCCTGTTTTGGGGGTTGCTA 60.830 55.000 0.00 0.00 0.00 3.49
1284 1445 5.106908 GGTTGCTATTCTTGATCTAATCGGC 60.107 44.000 0.00 1.80 0.00 5.54
1432 1601 3.673902 AGCCTGCTTTGTTGTTGTTTTT 58.326 36.364 0.00 0.00 0.00 1.94
1467 1636 0.035820 GCCCCCGTGTAATCTCAACA 60.036 55.000 0.00 0.00 0.00 3.33
1468 1637 1.734163 CCCCCGTGTAATCTCAACAC 58.266 55.000 0.00 0.00 43.04 3.32
1478 1647 7.148853 CCGTGTAATCTCAACACTACAAAGTAC 60.149 40.741 4.99 0.00 44.05 2.73
1479 1648 7.594015 CGTGTAATCTCAACACTACAAAGTACT 59.406 37.037 4.99 0.00 44.05 2.73
1480 1649 8.913656 GTGTAATCTCAACACTACAAAGTACTC 58.086 37.037 0.00 0.00 43.13 2.59
1481 1650 8.086522 TGTAATCTCAACACTACAAAGTACTCC 58.913 37.037 0.00 0.00 33.48 3.85
1482 1651 5.464030 TCTCAACACTACAAAGTACTCCC 57.536 43.478 0.00 0.00 33.48 4.30
1483 1652 5.145564 TCTCAACACTACAAAGTACTCCCT 58.854 41.667 0.00 0.00 33.48 4.20
1484 1653 5.243283 TCTCAACACTACAAAGTACTCCCTC 59.757 44.000 0.00 0.00 33.48 4.30
1485 1654 4.282703 TCAACACTACAAAGTACTCCCTCC 59.717 45.833 0.00 0.00 33.48 4.30
1486 1655 2.824341 ACACTACAAAGTACTCCCTCCG 59.176 50.000 0.00 0.00 33.48 4.63
1487 1656 2.824341 CACTACAAAGTACTCCCTCCGT 59.176 50.000 0.00 0.00 33.48 4.69
1488 1657 3.257624 CACTACAAAGTACTCCCTCCGTT 59.742 47.826 0.00 0.00 33.48 4.44
1489 1658 3.509184 ACTACAAAGTACTCCCTCCGTTC 59.491 47.826 0.00 0.00 32.84 3.95
1490 1659 1.622312 ACAAAGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
1491 1660 1.900486 CAAAGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
1492 1661 3.094572 CAAAGTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
1493 1662 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
1494 1663 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1495 1664 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1496 1665 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1497 1666 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1498 1667 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1499 1668 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1500 1669 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1501 1670 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1502 1671 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1503 1672 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1504 1673 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1505 1674 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1506 1675 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1507 1676 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1544 1713 7.727578 TGGATTACCACATACGGATGTATAT 57.272 36.000 14.23 4.37 44.82 0.86
1545 1714 8.826293 TGGATTACCACATACGGATGTATATA 57.174 34.615 14.23 3.33 44.82 0.86
1546 1715 8.909923 TGGATTACCACATACGGATGTATATAG 58.090 37.037 14.23 0.00 44.82 1.31
1547 1716 9.128404 GGATTACCACATACGGATGTATATAGA 57.872 37.037 14.23 0.00 44.82 1.98
1548 1717 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
1549 1718 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
1550 1719 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
1552 1721 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
1581 1750 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1582 1751 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1583 1752 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1584 1753 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1585 1754 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1586 1755 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1587 1756 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1588 1757 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1589 1758 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1590 1759 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1591 1760 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1592 1761 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1593 1762 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1594 1763 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1595 1764 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1596 1765 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1597 1766 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1598 1767 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1599 1768 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1600 1769 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1601 1770 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1602 1771 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1603 1772 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1604 1773 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1605 1774 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
1606 1775 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
1607 1776 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
1608 1777 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1609 1778 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1610 1779 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1611 1780 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1612 1781 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1613 1782 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1614 1783 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1615 1784 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1616 1785 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1617 1786 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1618 1787 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1619 1788 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1635 1804 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
1636 1805 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
1637 1806 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
1638 1807 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
1639 1808 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
1640 1809 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
1641 1810 9.004231 ACAAATATTTAGGAACAGAGGGAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
1674 1843 5.105106 TCACCAGAACTTGTCTTACAACTGA 60.105 40.000 9.29 0.00 33.90 3.41
1675 1844 5.584649 CACCAGAACTTGTCTTACAACTGAA 59.415 40.000 9.29 0.00 33.90 3.02
1676 1845 5.585047 ACCAGAACTTGTCTTACAACTGAAC 59.415 40.000 9.29 0.00 33.90 3.18
1677 1846 5.817816 CCAGAACTTGTCTTACAACTGAACT 59.182 40.000 9.29 0.00 33.90 3.01
1678 1847 6.238211 CCAGAACTTGTCTTACAACTGAACTG 60.238 42.308 9.29 0.00 33.90 3.16
1689 1858 0.535102 ACTGAACTGCCTCGTTTGGG 60.535 55.000 0.00 0.00 0.00 4.12
1696 1865 3.058160 CCTCGTTTGGGCAGCAGG 61.058 66.667 0.00 0.00 0.00 4.85
1707 1876 3.190337 GCAGCAGGCAGTTTCAAAG 57.810 52.632 0.00 0.00 43.97 2.77
1733 1902 0.239082 TCAGCAGCGCTCAAAACATG 59.761 50.000 7.13 0.00 36.40 3.21
1781 2194 6.070653 TGACGAGTTTGGGTTATACCATTAGT 60.071 38.462 0.00 0.00 41.02 2.24
1839 2253 7.745022 ATTCATAATTTCATTGCTTGTGTCG 57.255 32.000 0.00 0.00 0.00 4.35
1845 2274 0.661187 CATTGCTTGTGTCGTGGCAC 60.661 55.000 7.79 7.79 39.65 5.01
1850 2279 2.047151 CTTGTGTCGTGGCACGCTTT 62.047 55.000 33.59 0.00 42.21 3.51
1867 2296 1.266175 CTTTGGTGTGAGCAGCTTCAG 59.734 52.381 0.00 0.00 43.05 3.02
1926 2355 1.907807 GACCACCATGGCAGCCAAA 60.908 57.895 20.84 0.00 42.67 3.28
1951 2380 0.482446 TGGCCAGGATGAAGTGGTTT 59.518 50.000 0.00 0.00 39.69 3.27
1983 2415 1.867865 GATTTAGTCCGCTAGCCTTGC 59.132 52.381 9.66 0.00 0.00 4.01
2021 2455 4.558226 TGCTAGTGATGTTCCAGTCAAT 57.442 40.909 0.00 0.00 0.00 2.57
2157 2591 2.566952 ATAGCGCCATTGTTTTGCTC 57.433 45.000 2.29 0.00 37.12 4.26
2158 2592 0.167908 TAGCGCCATTGTTTTGCTCG 59.832 50.000 2.29 0.00 37.12 5.03
2159 2593 1.371635 GCGCCATTGTTTTGCTCGT 60.372 52.632 0.00 0.00 0.00 4.18
2184 2618 7.325660 AGTTGTCTTATTTGGATATGTGCTG 57.674 36.000 0.00 0.00 0.00 4.41
2185 2619 5.756195 TGTCTTATTTGGATATGTGCTGC 57.244 39.130 0.00 0.00 0.00 5.25
2240 3931 0.823356 TGCTGACAAACCCTGCCTTC 60.823 55.000 0.00 0.00 0.00 3.46
2313 4004 4.251268 AGCTAGGACAAAAATACCGTGTC 58.749 43.478 0.00 0.00 40.77 3.67
2316 4007 1.462869 GGACAAAAATACCGTGTCGCG 60.463 52.381 0.00 0.00 42.11 5.87
2358 4050 9.717942 GCCCAATAATTATTGTAATATTTGCCA 57.282 29.630 28.10 0.00 41.04 4.92
2373 4065 5.854010 ATTTGCCAAGTCGTCTCTCTATA 57.146 39.130 0.00 0.00 0.00 1.31
2459 4168 9.802039 ACTTGTATTTTTGTAATTCCCTCTGTA 57.198 29.630 0.00 0.00 0.00 2.74
2585 4296 8.908903 TCTGCTTCTTTGAATTACCTTTTGTTA 58.091 29.630 0.00 0.00 0.00 2.41
2601 4312 6.149474 CCTTTTGTTATGTTAGAGTGGAGGTG 59.851 42.308 0.00 0.00 0.00 4.00
2825 4560 8.545229 TGAAGTTTTCAACAACAATGACATTT 57.455 26.923 0.00 0.00 36.59 2.32
2827 4562 9.476761 GAAGTTTTCAACAACAATGACATTTTC 57.523 29.630 0.00 0.00 0.00 2.29
2892 4627 7.473735 TTTATGTCCATTTGTGGCATCTAAA 57.526 32.000 0.00 0.00 31.59 1.85
2898 4633 7.229306 TGTCCATTTGTGGCATCTAAATATCTC 59.771 37.037 0.00 0.00 0.00 2.75
2916 4652 1.000896 CCCAGGGCGAATGAAAGGT 60.001 57.895 0.00 0.00 0.00 3.50
3151 4887 2.774234 TCAATCCAAACAGCCCCAAAAA 59.226 40.909 0.00 0.00 0.00 1.94
3169 4907 2.814280 AAGTCCTGTACAACCACTCG 57.186 50.000 0.00 0.00 0.00 4.18
3263 5012 3.324846 TCATGGCATGTACTACCTCCATC 59.675 47.826 25.62 0.00 32.48 3.51
3284 5033 6.542370 CCATCCAAAAATACACGATTCCTAGT 59.458 38.462 0.00 0.00 0.00 2.57
3406 5167 8.700973 TGTAGAATGGCTTCACAGTATAATGTA 58.299 33.333 5.36 0.00 33.56 2.29
3413 5174 9.283768 TGGCTTCACAGTATAATGTATAAATGG 57.716 33.333 5.36 0.00 0.00 3.16
3417 5178 8.615878 TCACAGTATAATGTATAAATGGTGGC 57.384 34.615 5.36 0.00 0.00 5.01
3429 5291 2.048444 ATGGTGGCATAGCAAGTCAG 57.952 50.000 0.00 0.00 40.70 3.51
3443 5306 5.640732 AGCAAGTCAGTAATTATTTTGGCG 58.359 37.500 0.00 0.00 0.00 5.69
3458 5321 2.634815 TGGCGTGTGGTACCTTTTTA 57.365 45.000 14.36 0.00 0.00 1.52
3618 5499 0.310854 CCAGGACACCGAAGTTTTGC 59.689 55.000 0.00 0.00 0.00 3.68
3682 5567 3.950397 TCCTGGTGTTCCAATCATGTAC 58.050 45.455 0.00 0.00 43.81 2.90
3754 5649 5.995282 TGGTGGAGGTAATATATTTTGCTCG 59.005 40.000 2.68 0.00 0.00 5.03
3893 5794 2.813754 CTGGTACCAAACACCATCACAG 59.186 50.000 17.11 0.00 44.89 3.66
4105 6030 3.156293 TGGTGTTGTTAATGCTGCAGAT 58.844 40.909 20.43 5.31 0.00 2.90
4172 6105 0.540133 TGCTTTGGCATGCTTCTGGA 60.540 50.000 18.92 4.59 44.28 3.86
4422 17027 3.196469 TCTCTGCTCTTGGTCATTGTAGG 59.804 47.826 0.00 0.00 0.00 3.18
4537 17146 0.908198 AGGGAGAGCAAGCTTACCAG 59.092 55.000 0.00 0.00 0.00 4.00
4558 17167 7.820648 ACCAGCACATAATTTTCTAAACTGAG 58.179 34.615 0.00 0.00 0.00 3.35
4693 17302 0.462759 CCTGGGTGCTAGCTTGTAGC 60.463 60.000 17.23 6.89 42.84 3.58
4733 17342 4.979335 TGACTCACATTGGAACCACATAA 58.021 39.130 0.00 0.00 0.00 1.90
4739 17348 8.303876 ACTCACATTGGAACCACATAAAATAAC 58.696 33.333 0.00 0.00 0.00 1.89
4764 17373 1.215423 GAGGGTACATGCTGGGGAATT 59.785 52.381 0.00 0.00 0.00 2.17
4765 17374 2.441750 GAGGGTACATGCTGGGGAATTA 59.558 50.000 0.00 0.00 0.00 1.40
4766 17375 2.856231 AGGGTACATGCTGGGGAATTAA 59.144 45.455 0.00 0.00 0.00 1.40
4767 17376 3.117512 AGGGTACATGCTGGGGAATTAAG 60.118 47.826 0.00 0.00 0.00 1.85
4768 17377 3.222603 GGTACATGCTGGGGAATTAAGG 58.777 50.000 0.00 0.00 0.00 2.69
4769 17378 3.117663 GGTACATGCTGGGGAATTAAGGA 60.118 47.826 0.00 0.00 0.00 3.36
4770 17379 3.018423 ACATGCTGGGGAATTAAGGAC 57.982 47.619 0.00 0.00 0.00 3.85
4771 17380 2.311542 ACATGCTGGGGAATTAAGGACA 59.688 45.455 0.00 0.00 0.00 4.02
4772 17381 2.806945 TGCTGGGGAATTAAGGACAG 57.193 50.000 0.00 0.00 0.00 3.51
4773 17382 1.992557 TGCTGGGGAATTAAGGACAGT 59.007 47.619 0.00 0.00 0.00 3.55
4774 17383 2.026262 TGCTGGGGAATTAAGGACAGTC 60.026 50.000 0.00 0.00 0.00 3.51
4775 17384 2.026262 GCTGGGGAATTAAGGACAGTCA 60.026 50.000 2.17 0.00 0.00 3.41
4776 17385 3.561313 GCTGGGGAATTAAGGACAGTCAA 60.561 47.826 2.17 0.00 0.00 3.18
4777 17386 4.662278 CTGGGGAATTAAGGACAGTCAAA 58.338 43.478 2.17 0.00 0.00 2.69
4778 17387 4.403734 TGGGGAATTAAGGACAGTCAAAC 58.596 43.478 2.17 0.00 0.00 2.93
4779 17388 3.762288 GGGGAATTAAGGACAGTCAAACC 59.238 47.826 2.17 0.00 0.00 3.27
4780 17389 3.439129 GGGAATTAAGGACAGTCAAACCG 59.561 47.826 2.17 0.00 0.00 4.44
4781 17390 4.320870 GGAATTAAGGACAGTCAAACCGA 58.679 43.478 2.17 0.00 0.00 4.69
4782 17391 4.392138 GGAATTAAGGACAGTCAAACCGAG 59.608 45.833 2.17 0.00 0.00 4.63
4783 17392 2.450609 TAAGGACAGTCAAACCGAGC 57.549 50.000 2.17 0.00 0.00 5.03
4784 17393 0.250338 AAGGACAGTCAAACCGAGCC 60.250 55.000 2.17 0.00 0.00 4.70
4785 17394 1.122019 AGGACAGTCAAACCGAGCCT 61.122 55.000 2.17 0.00 0.00 4.58
4786 17395 0.606604 GGACAGTCAAACCGAGCCTA 59.393 55.000 2.17 0.00 0.00 3.93
4787 17396 1.001633 GGACAGTCAAACCGAGCCTAA 59.998 52.381 2.17 0.00 0.00 2.69
4788 17397 2.549349 GGACAGTCAAACCGAGCCTAAA 60.549 50.000 2.17 0.00 0.00 1.85
4789 17398 2.737252 GACAGTCAAACCGAGCCTAAAG 59.263 50.000 0.00 0.00 0.00 1.85
4790 17399 1.464997 CAGTCAAACCGAGCCTAAAGC 59.535 52.381 0.00 0.00 44.25 3.51
4800 17409 3.266282 GCCTAAAGCGAGCTCTCTC 57.734 57.895 12.85 0.65 35.99 3.20
4801 17410 0.457851 GCCTAAAGCGAGCTCTCTCA 59.542 55.000 12.85 0.00 39.30 3.27
4802 17411 1.535860 GCCTAAAGCGAGCTCTCTCAG 60.536 57.143 12.85 9.84 39.30 3.35
4810 17419 2.104729 GCTCTCTCAGCGCCTCAG 59.895 66.667 2.29 0.00 38.76 3.35
4811 17420 2.709883 GCTCTCTCAGCGCCTCAGT 61.710 63.158 2.29 0.00 38.76 3.41
4812 17421 1.380403 GCTCTCTCAGCGCCTCAGTA 61.380 60.000 2.29 0.00 38.76 2.74
4813 17422 1.098869 CTCTCTCAGCGCCTCAGTAA 58.901 55.000 2.29 0.00 0.00 2.24
4814 17423 1.680735 CTCTCTCAGCGCCTCAGTAAT 59.319 52.381 2.29 0.00 0.00 1.89
4815 17424 2.100584 CTCTCTCAGCGCCTCAGTAATT 59.899 50.000 2.29 0.00 0.00 1.40
4816 17425 2.497675 TCTCTCAGCGCCTCAGTAATTT 59.502 45.455 2.29 0.00 0.00 1.82
4817 17426 3.055819 TCTCTCAGCGCCTCAGTAATTTT 60.056 43.478 2.29 0.00 0.00 1.82
4818 17427 3.002791 TCTCAGCGCCTCAGTAATTTTG 58.997 45.455 2.29 0.00 0.00 2.44
4819 17428 2.083774 TCAGCGCCTCAGTAATTTTGG 58.916 47.619 2.29 0.00 0.00 3.28
4820 17429 0.811281 AGCGCCTCAGTAATTTTGGC 59.189 50.000 2.29 0.00 40.14 4.52
4821 17430 0.179137 GCGCCTCAGTAATTTTGGCC 60.179 55.000 0.00 0.00 40.40 5.36
4822 17431 0.098728 CGCCTCAGTAATTTTGGCCG 59.901 55.000 0.00 0.00 40.40 6.13
4823 17432 1.173913 GCCTCAGTAATTTTGGCCGT 58.826 50.000 0.00 0.00 37.81 5.68
4824 17433 1.132453 GCCTCAGTAATTTTGGCCGTC 59.868 52.381 0.00 0.00 37.81 4.79
4825 17434 2.432444 CCTCAGTAATTTTGGCCGTCA 58.568 47.619 0.00 0.00 0.00 4.35
4826 17435 2.420022 CCTCAGTAATTTTGGCCGTCAG 59.580 50.000 0.00 0.00 0.00 3.51
4827 17436 3.334691 CTCAGTAATTTTGGCCGTCAGA 58.665 45.455 0.00 0.00 0.00 3.27
4828 17437 3.941483 CTCAGTAATTTTGGCCGTCAGAT 59.059 43.478 0.00 0.00 0.00 2.90
4829 17438 3.938963 TCAGTAATTTTGGCCGTCAGATC 59.061 43.478 0.00 0.00 0.00 2.75
4830 17439 3.941483 CAGTAATTTTGGCCGTCAGATCT 59.059 43.478 0.00 0.00 0.00 2.75
4831 17440 4.034510 CAGTAATTTTGGCCGTCAGATCTC 59.965 45.833 0.00 0.00 0.00 2.75
4832 17441 1.656652 ATTTTGGCCGTCAGATCTCG 58.343 50.000 0.00 0.00 0.00 4.04
4833 17442 0.320374 TTTTGGCCGTCAGATCTCGT 59.680 50.000 0.00 0.00 0.00 4.18
4834 17443 0.320374 TTTGGCCGTCAGATCTCGTT 59.680 50.000 0.00 0.00 0.00 3.85
4835 17444 0.320374 TTGGCCGTCAGATCTCGTTT 59.680 50.000 0.00 0.00 0.00 3.60
4836 17445 0.389817 TGGCCGTCAGATCTCGTTTG 60.390 55.000 0.00 0.00 0.00 2.93
4837 17446 1.696832 GGCCGTCAGATCTCGTTTGC 61.697 60.000 0.00 0.00 0.00 3.68
4838 17447 1.014044 GCCGTCAGATCTCGTTTGCA 61.014 55.000 0.00 0.00 0.00 4.08
4839 17448 0.994995 CCGTCAGATCTCGTTTGCAG 59.005 55.000 0.00 0.00 0.00 4.41
4840 17449 1.402852 CCGTCAGATCTCGTTTGCAGA 60.403 52.381 0.00 0.00 0.00 4.26
4841 17450 2.534298 CGTCAGATCTCGTTTGCAGAT 58.466 47.619 0.00 0.00 33.01 2.90
4842 17451 2.533535 CGTCAGATCTCGTTTGCAGATC 59.466 50.000 5.05 5.05 44.69 2.75
4846 17455 3.999229 GATCTCGTTTGCAGATCGTTT 57.001 42.857 7.03 0.00 37.59 3.60
4847 17456 4.327854 GATCTCGTTTGCAGATCGTTTT 57.672 40.909 7.03 0.00 37.59 2.43
4848 17457 3.788434 TCTCGTTTGCAGATCGTTTTC 57.212 42.857 7.03 0.00 0.00 2.29
4849 17458 3.127589 TCTCGTTTGCAGATCGTTTTCA 58.872 40.909 7.03 0.00 0.00 2.69
4850 17459 3.745975 TCTCGTTTGCAGATCGTTTTCAT 59.254 39.130 7.03 0.00 0.00 2.57
4851 17460 4.213270 TCTCGTTTGCAGATCGTTTTCATT 59.787 37.500 7.03 0.00 0.00 2.57
4852 17461 5.407084 TCTCGTTTGCAGATCGTTTTCATTA 59.593 36.000 7.03 0.00 0.00 1.90
4853 17462 5.617609 TCGTTTGCAGATCGTTTTCATTAG 58.382 37.500 7.03 0.00 0.00 1.73
4854 17463 5.178623 TCGTTTGCAGATCGTTTTCATTAGT 59.821 36.000 7.03 0.00 0.00 2.24
4855 17464 5.504755 CGTTTGCAGATCGTTTTCATTAGTC 59.495 40.000 0.00 0.00 0.00 2.59
4856 17465 6.370593 GTTTGCAGATCGTTTTCATTAGTCA 58.629 36.000 0.00 0.00 0.00 3.41
4857 17466 5.784750 TGCAGATCGTTTTCATTAGTCAG 57.215 39.130 0.00 0.00 0.00 3.51
4858 17467 4.631377 TGCAGATCGTTTTCATTAGTCAGG 59.369 41.667 0.00 0.00 0.00 3.86
4859 17468 4.631813 GCAGATCGTTTTCATTAGTCAGGT 59.368 41.667 0.00 0.00 0.00 4.00
4860 17469 5.220491 GCAGATCGTTTTCATTAGTCAGGTC 60.220 44.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.943340 GCCCAGGCTCTAGAATTTTCG 59.057 52.381 0.08 0.00 38.26 3.46
151 152 1.728971 CAGAACTTGCTTCGCTACCTG 59.271 52.381 0.00 0.00 33.60 4.00
152 153 2.086054 CAGAACTTGCTTCGCTACCT 57.914 50.000 0.00 0.00 33.60 3.08
163 164 0.040067 GGCGACCTTTGCAGAACTTG 60.040 55.000 0.00 0.00 0.00 3.16
166 167 0.884704 TCTGGCGACCTTTGCAGAAC 60.885 55.000 0.00 0.00 0.00 3.01
169 170 2.037136 CCTCTGGCGACCTTTGCAG 61.037 63.158 0.00 0.00 0.00 4.41
171 172 1.172812 AAACCTCTGGCGACCTTTGC 61.173 55.000 0.00 0.00 0.00 3.68
179 180 4.731773 GCAAGATAATTGAAACCTCTGGCG 60.732 45.833 0.00 0.00 0.00 5.69
184 185 5.124457 TGCTCTGCAAGATAATTGAAACCTC 59.876 40.000 0.00 0.00 45.62 3.85
232 235 2.251893 GTGTTAAGTCTTCTCCTCGCG 58.748 52.381 0.00 0.00 0.00 5.87
235 238 7.171630 TCCTATTGTGTTAAGTCTTCTCCTC 57.828 40.000 0.00 0.00 0.00 3.71
248 251 6.925165 CACAGCAAGAAATTTCCTATTGTGTT 59.075 34.615 22.46 7.08 0.00 3.32
257 260 2.560105 AGCCTCACAGCAAGAAATTTCC 59.440 45.455 14.61 0.00 34.23 3.13
323 335 7.377398 TGAATTTGTGGGACATCATTTTACAG 58.623 34.615 0.00 0.00 44.52 2.74
325 337 8.776376 AATGAATTTGTGGGACATCATTTTAC 57.224 30.769 0.00 0.00 44.52 2.01
333 345 4.592351 TGGTTGAATGAATTTGTGGGACAT 59.408 37.500 0.00 0.00 44.52 3.06
340 356 5.997129 GGGTCATTTGGTTGAATGAATTTGT 59.003 36.000 2.21 0.00 44.92 2.83
390 406 6.857437 AGGGGAGGTTTTTCATTTTATCAG 57.143 37.500 0.00 0.00 0.00 2.90
401 417 4.536295 TTCAGAGAAAGGGGAGGTTTTT 57.464 40.909 0.00 0.00 0.00 1.94
438 511 6.647895 GCTCAATGGTTGATTTGAACTTGAAT 59.352 34.615 0.00 0.00 39.30 2.57
476 549 6.024552 TGCCACTACCTTTCATCAATTTTC 57.975 37.500 0.00 0.00 0.00 2.29
478 551 6.610075 AATGCCACTACCTTTCATCAATTT 57.390 33.333 0.00 0.00 0.00 1.82
485 558 5.247564 ACTGTACTAATGCCACTACCTTTCA 59.752 40.000 0.00 0.00 0.00 2.69
486 559 5.731591 ACTGTACTAATGCCACTACCTTTC 58.268 41.667 0.00 0.00 0.00 2.62
488 561 5.956563 ACTACTGTACTAATGCCACTACCTT 59.043 40.000 0.00 0.00 0.00 3.50
489 562 5.516984 ACTACTGTACTAATGCCACTACCT 58.483 41.667 0.00 0.00 0.00 3.08
490 563 5.848833 ACTACTGTACTAATGCCACTACC 57.151 43.478 0.00 0.00 0.00 3.18
491 564 6.319658 TGGTACTACTGTACTAATGCCACTAC 59.680 42.308 6.34 0.00 46.04 2.73
493 566 5.126707 GTGGTACTACTGTACTAATGCCACT 59.873 44.000 1.48 0.00 46.04 4.00
496 569 5.587388 TGTGGTACTACTGTACTAATGCC 57.413 43.478 10.95 0.00 46.04 4.40
500 591 7.822161 TTCAGTTGTGGTACTACTGTACTAA 57.178 36.000 18.16 7.14 46.80 2.24
515 606 0.874390 CACCGGTCCATTCAGTTGTG 59.126 55.000 2.59 0.00 0.00 3.33
532 623 4.751767 AGATGAGGAACTGAGGAATCAC 57.248 45.455 0.00 0.00 41.55 3.06
533 624 5.129485 GGTAAGATGAGGAACTGAGGAATCA 59.871 44.000 0.00 0.00 41.55 2.57
718 830 2.079288 GTTCCTCCCCTGATCCCCC 61.079 68.421 0.00 0.00 0.00 5.40
776 889 3.594134 CCCTTTCTGTCTGTCAGTCATC 58.406 50.000 0.00 0.00 43.97 2.92
787 908 2.946762 GCGTGTGCCCTTTCTGTC 59.053 61.111 0.00 0.00 33.98 3.51
788 909 2.972505 CGCGTGTGCCCTTTCTGT 60.973 61.111 0.00 0.00 38.08 3.41
789 910 3.726517 CCGCGTGTGCCCTTTCTG 61.727 66.667 4.92 0.00 38.08 3.02
907 1039 1.227674 GTCCGTGGATGATGGCTCC 60.228 63.158 0.00 0.00 0.00 4.70
912 1044 2.588877 GCGGGTCCGTGGATGATG 60.589 66.667 11.25 0.00 42.09 3.07
988 1127 0.981277 TTCCCCATCCTCCCTCGAAC 60.981 60.000 0.00 0.00 0.00 3.95
1041 1180 5.294060 GGTCTTCTTGCTGATGATCTTCTTC 59.706 44.000 9.75 2.86 32.57 2.87
1076 1215 1.800229 AAAGGGGAACGGGGATGCTT 61.800 55.000 0.00 0.00 0.00 3.91
1079 1218 2.052104 GCAAAGGGGAACGGGGATG 61.052 63.158 0.00 0.00 0.00 3.51
1080 1219 2.359011 GCAAAGGGGAACGGGGAT 59.641 61.111 0.00 0.00 0.00 3.85
1081 1220 4.338710 CGCAAAGGGGAACGGGGA 62.339 66.667 0.00 0.00 0.00 4.81
1103 1242 2.027625 GACCACAGGAAACCGCGAG 61.028 63.158 8.23 0.00 0.00 5.03
1107 1250 1.374252 CCGAGACCACAGGAAACCG 60.374 63.158 0.00 0.00 0.00 4.44
1121 1264 2.444706 TCATCTCAGGGCCCCGAG 60.445 66.667 27.03 27.03 0.00 4.63
1122 1265 2.444706 CTCATCTCAGGGCCCCGA 60.445 66.667 21.43 14.23 0.00 5.14
1126 1269 1.034292 GCAAACCTCATCTCAGGGCC 61.034 60.000 0.00 0.00 37.96 5.80
1155 1300 2.416972 GCACCTCGTCCTTGTACCTAAG 60.417 54.545 0.00 0.00 0.00 2.18
1194 1341 0.605589 AGCTTCTCCTTCTCGGTGTG 59.394 55.000 0.00 0.00 0.00 3.82
1267 1428 3.804325 CACACGCCGATTAGATCAAGAAT 59.196 43.478 0.00 0.00 0.00 2.40
1432 1601 1.967779 GGGGCTTCCAGCAAGTTAAAA 59.032 47.619 0.00 0.00 44.75 1.52
1433 1602 1.627864 GGGGCTTCCAGCAAGTTAAA 58.372 50.000 0.00 0.00 44.75 1.52
1437 1606 4.351054 CGGGGGCTTCCAGCAAGT 62.351 66.667 0.00 0.00 44.75 3.16
1441 1610 2.552231 ATTACACGGGGGCTTCCAGC 62.552 60.000 0.00 0.00 41.46 4.85
1467 1636 3.166560 ACGGAGGGAGTACTTTGTAGT 57.833 47.619 0.00 0.00 38.44 2.73
1468 1637 3.119209 GGAACGGAGGGAGTACTTTGTAG 60.119 52.174 0.00 0.00 0.00 2.74
1478 1647 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1479 1648 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1480 1649 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1481 1650 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1505 1674 9.527157 TGTGGTAATCCATTTGAAATCTCTAAA 57.473 29.630 0.00 0.00 46.20 1.85
1506 1675 9.699410 ATGTGGTAATCCATTTGAAATCTCTAA 57.301 29.630 0.00 0.00 46.20 2.10
1508 1677 9.125026 GTATGTGGTAATCCATTTGAAATCTCT 57.875 33.333 0.00 0.00 46.20 3.10
1509 1678 8.070171 CGTATGTGGTAATCCATTTGAAATCTC 58.930 37.037 0.00 0.00 46.20 2.75
1510 1679 7.013274 CCGTATGTGGTAATCCATTTGAAATCT 59.987 37.037 0.00 0.00 46.20 2.40
1511 1680 7.012894 TCCGTATGTGGTAATCCATTTGAAATC 59.987 37.037 0.00 0.00 46.20 2.17
1512 1681 6.831353 TCCGTATGTGGTAATCCATTTGAAAT 59.169 34.615 0.00 0.00 46.20 2.17
1513 1682 6.181190 TCCGTATGTGGTAATCCATTTGAAA 58.819 36.000 0.00 0.00 46.20 2.69
1514 1683 5.746284 TCCGTATGTGGTAATCCATTTGAA 58.254 37.500 0.00 0.00 46.20 2.69
1515 1684 5.360649 TCCGTATGTGGTAATCCATTTGA 57.639 39.130 0.00 0.00 46.20 2.69
1516 1685 5.530915 ACATCCGTATGTGGTAATCCATTTG 59.469 40.000 0.00 0.00 44.79 2.32
1517 1686 5.690865 ACATCCGTATGTGGTAATCCATTT 58.309 37.500 0.00 0.00 44.79 2.32
1518 1687 5.304686 ACATCCGTATGTGGTAATCCATT 57.695 39.130 0.00 0.00 44.79 3.16
1519 1688 4.974645 ACATCCGTATGTGGTAATCCAT 57.025 40.909 0.00 0.00 44.79 3.41
1520 1689 7.727578 ATATACATCCGTATGTGGTAATCCA 57.272 36.000 3.56 0.00 45.99 3.41
1521 1690 9.128404 TCTATATACATCCGTATGTGGTAATCC 57.872 37.037 3.56 0.00 45.99 3.01
1522 1691 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
1523 1692 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
1524 1693 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
1526 1695 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
1559 1728 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1560 1729 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1561 1730 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1562 1731 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1563 1732 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1564 1733 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1565 1734 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1566 1735 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1567 1736 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1568 1737 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1569 1738 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1570 1739 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1571 1740 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1572 1741 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1573 1742 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1574 1743 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1575 1744 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1576 1745 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1577 1746 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1578 1747 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1579 1748 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1580 1749 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1581 1750 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
1582 1751 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1583 1752 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1585 1754 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1586 1755 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1587 1756 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1588 1757 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1589 1758 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1590 1759 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1591 1760 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1592 1761 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1593 1762 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1609 1778 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
1610 1779 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
1611 1780 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
1612 1781 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
1613 1782 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
1614 1783 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
1615 1784 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
1616 1785 9.853177 AATACTCCCTCTGTTCCTAAATATTTG 57.147 33.333 11.05 1.40 0.00 2.32
1621 1790 9.004231 ACATAAATACTCCCTCTGTTCCTAAAT 57.996 33.333 0.00 0.00 0.00 1.40
1622 1791 8.265055 CACATAAATACTCCCTCTGTTCCTAAA 58.735 37.037 0.00 0.00 0.00 1.85
1623 1792 7.402071 ACACATAAATACTCCCTCTGTTCCTAA 59.598 37.037 0.00 0.00 0.00 2.69
1624 1793 6.901300 ACACATAAATACTCCCTCTGTTCCTA 59.099 38.462 0.00 0.00 0.00 2.94
1625 1794 5.726793 ACACATAAATACTCCCTCTGTTCCT 59.273 40.000 0.00 0.00 0.00 3.36
1626 1795 5.990668 ACACATAAATACTCCCTCTGTTCC 58.009 41.667 0.00 0.00 0.00 3.62
1627 1796 7.064728 GTGAACACATAAATACTCCCTCTGTTC 59.935 40.741 0.00 0.00 36.88 3.18
1628 1797 6.879458 GTGAACACATAAATACTCCCTCTGTT 59.121 38.462 0.00 0.00 0.00 3.16
1629 1798 6.407202 GTGAACACATAAATACTCCCTCTGT 58.593 40.000 0.00 0.00 0.00 3.41
1630 1799 5.817816 GGTGAACACATAAATACTCCCTCTG 59.182 44.000 7.25 0.00 0.00 3.35
1631 1800 5.487488 TGGTGAACACATAAATACTCCCTCT 59.513 40.000 7.25 0.00 0.00 3.69
1632 1801 5.741011 TGGTGAACACATAAATACTCCCTC 58.259 41.667 7.25 0.00 0.00 4.30
1633 1802 5.487488 TCTGGTGAACACATAAATACTCCCT 59.513 40.000 7.25 0.00 0.00 4.20
1634 1803 5.741011 TCTGGTGAACACATAAATACTCCC 58.259 41.667 7.25 0.00 0.00 4.30
1689 1858 0.386838 ACTTTGAAACTGCCTGCTGC 59.613 50.000 0.00 0.00 41.77 5.25
1696 1865 3.060070 GCTGAATGCAACTTTGAAACTGC 60.060 43.478 0.00 1.36 42.31 4.40
1750 1919 3.764237 AACCCAAACTCGTCAGTATGT 57.236 42.857 0.00 0.00 37.40 2.29
1752 1921 5.422970 TGGTATAACCCAAACTCGTCAGTAT 59.577 40.000 0.00 0.00 37.50 2.12
1755 2141 4.196626 TGGTATAACCCAAACTCGTCAG 57.803 45.455 0.00 0.00 37.50 3.51
1760 2146 7.773690 ACATGACTAATGGTATAACCCAAACTC 59.226 37.037 0.00 0.00 40.94 3.01
1781 2194 2.743664 GCACATGAACTAGCACACATGA 59.256 45.455 18.76 0.00 41.45 3.07
1839 2253 2.026014 CACACCAAAGCGTGCCAC 59.974 61.111 0.00 0.00 37.25 5.01
1845 2274 1.789078 AAGCTGCTCACACCAAAGCG 61.789 55.000 1.00 0.00 41.51 4.68
1850 2279 1.598962 GCTGAAGCTGCTCACACCA 60.599 57.895 1.00 0.00 38.21 4.17
1859 2288 6.486253 TCAGTTTAATTAGTGCTGAAGCTG 57.514 37.500 3.61 3.82 42.66 4.24
1894 2323 5.760253 CCATGGTGGTCTGTTATCTGATAAC 59.240 44.000 26.19 26.19 38.18 1.89
1898 2327 2.092968 GCCATGGTGGTCTGTTATCTGA 60.093 50.000 14.67 0.00 40.46 3.27
1908 2337 1.470996 TTTTGGCTGCCATGGTGGTC 61.471 55.000 24.03 8.63 40.46 4.02
1951 2380 6.220930 AGCGGACTAAATCTAATCGCAATAA 58.779 36.000 0.00 0.00 43.41 1.40
1983 2415 6.426025 TCACTAGCATTAGCAAAGCATATGAG 59.574 38.462 6.97 0.00 45.49 2.90
2021 2455 3.599730 ATGCATGAAGACGAGTCTGAA 57.400 42.857 6.51 0.00 40.36 3.02
2077 2511 3.523157 TCTCCAAATCCAACTGCATAGGA 59.477 43.478 4.62 4.62 35.59 2.94
2157 2591 7.224753 AGCACATATCCAAATAAGACAACTACG 59.775 37.037 0.00 0.00 0.00 3.51
2158 2592 8.338259 CAGCACATATCCAAATAAGACAACTAC 58.662 37.037 0.00 0.00 0.00 2.73
2159 2593 7.012327 GCAGCACATATCCAAATAAGACAACTA 59.988 37.037 0.00 0.00 0.00 2.24
2184 2618 4.541779 TCAACATACACATGAAAAACGGC 58.458 39.130 0.00 0.00 35.96 5.68
2185 2619 6.142161 CAGTTCAACATACACATGAAAAACGG 59.858 38.462 0.00 0.00 35.07 4.44
2293 3984 3.061697 GCGACACGGTATTTTTGTCCTAG 59.938 47.826 0.00 0.00 37.01 3.02
2313 4004 2.157668 GGCATGAATATACCTCAACGCG 59.842 50.000 3.53 3.53 0.00 6.01
2316 4007 7.759489 TTATTGGGCATGAATATACCTCAAC 57.241 36.000 0.00 0.00 0.00 3.18
2358 4050 6.952773 AGCTCATTTATAGAGAGACGACTT 57.047 37.500 0.00 0.00 35.09 3.01
2459 4168 4.080299 CCTAGGGTCCTTAGCAATTCTGTT 60.080 45.833 0.00 0.00 0.00 3.16
2585 4296 0.537188 CGGCACCTCCACTCTAACAT 59.463 55.000 0.00 0.00 34.01 2.71
2601 4312 1.490621 GCATAACAAATGATGCCGGC 58.509 50.000 22.73 22.73 42.18 6.13
2722 4439 7.519002 ACTGTCGCTGTAAATGATTTTAGTTC 58.481 34.615 0.00 0.00 0.00 3.01
2892 4627 2.030027 TCATTCGCCCTGGGAGATAT 57.970 50.000 20.29 12.95 30.42 1.63
2898 4633 1.000896 ACCTTTCATTCGCCCTGGG 60.001 57.895 8.86 8.86 0.00 4.45
2916 4652 0.749818 TTGGCTCGAACCAAACAGCA 60.750 50.000 17.76 0.00 46.65 4.41
2974 4710 1.496934 GTGGGTGGCGAAAACATTTG 58.503 50.000 0.00 0.00 0.00 2.32
3111 4847 4.947147 GCCCTCACACGCCCAACA 62.947 66.667 0.00 0.00 0.00 3.33
3114 4850 4.408821 GATGCCCTCACACGCCCA 62.409 66.667 0.00 0.00 0.00 5.36
3151 4887 1.700955 ACGAGTGGTTGTACAGGACT 58.299 50.000 0.00 0.00 0.00 3.85
3263 5012 8.388103 CACTTACTAGGAATCGTGTATTTTTGG 58.612 37.037 0.00 0.00 0.00 3.28
3284 5033 9.890629 ATATACAGAATTCTGAAAGCACACTTA 57.109 29.630 36.15 17.30 46.59 2.24
3355 5106 5.114764 TCTGATGGTGCAATTTCTATCCA 57.885 39.130 0.00 0.00 0.00 3.41
3356 5107 6.645790 AATCTGATGGTGCAATTTCTATCC 57.354 37.500 0.00 0.00 0.00 2.59
3406 5167 4.535781 TGACTTGCTATGCCACCATTTAT 58.464 39.130 0.00 0.00 32.85 1.40
3408 5169 2.756760 CTGACTTGCTATGCCACCATTT 59.243 45.455 0.00 0.00 32.85 2.32
3410 5171 1.283029 ACTGACTTGCTATGCCACCAT 59.717 47.619 0.00 0.00 35.44 3.55
3411 5172 0.692476 ACTGACTTGCTATGCCACCA 59.308 50.000 0.00 0.00 0.00 4.17
3412 5173 2.691409 TACTGACTTGCTATGCCACC 57.309 50.000 0.00 0.00 0.00 4.61
3413 5174 6.867662 ATAATTACTGACTTGCTATGCCAC 57.132 37.500 0.00 0.00 0.00 5.01
3415 5176 7.649306 CCAAAATAATTACTGACTTGCTATGCC 59.351 37.037 0.00 0.00 0.00 4.40
3416 5177 7.168135 GCCAAAATAATTACTGACTTGCTATGC 59.832 37.037 0.00 0.00 0.00 3.14
3417 5178 7.376866 CGCCAAAATAATTACTGACTTGCTATG 59.623 37.037 0.00 0.00 0.00 2.23
3429 5291 5.124297 AGGTACCACACGCCAAAATAATTAC 59.876 40.000 15.94 0.00 0.00 1.89
3443 5306 7.911727 CAGTGTTTAACTAAAAAGGTACCACAC 59.088 37.037 15.94 14.21 36.83 3.82
3576 5441 4.036852 GTGCTAAACTTCAAGGAAGCAAGT 59.963 41.667 11.00 0.00 42.79 3.16
3577 5442 4.540824 GTGCTAAACTTCAAGGAAGCAAG 58.459 43.478 11.00 3.02 42.79 4.01
3578 5443 3.317993 GGTGCTAAACTTCAAGGAAGCAA 59.682 43.478 11.00 0.00 42.79 3.91
3579 5444 2.884639 GGTGCTAAACTTCAAGGAAGCA 59.115 45.455 6.52 6.52 42.79 3.91
3618 5499 5.620206 TGCACATGTTATCAGTATAAGGGG 58.380 41.667 0.00 0.00 0.00 4.79
3682 5567 2.699954 GAGTACCTGTGTTGGGTGATG 58.300 52.381 0.00 0.00 37.65 3.07
3754 5649 6.861065 TTTCATGAACAGAAACTACCACTC 57.139 37.500 7.89 0.00 30.56 3.51
3893 5794 4.098501 CCTAAATCAAGGAATCTGGGCAAC 59.901 45.833 0.00 0.00 39.15 4.17
4172 6105 1.913778 TGGCAACTGAGTGCAATGAT 58.086 45.000 0.00 0.00 46.81 2.45
4297 16892 8.141909 AGTTGAGCAATTATAGTTATCGCTACA 58.858 33.333 0.00 0.00 0.00 2.74
4422 17027 6.884836 AGTACCAAGTAAAGGTTCATGATTCC 59.115 38.462 0.00 2.61 40.54 3.01
4537 17146 9.214953 CGATTCTCAGTTTAGAAAATTATGTGC 57.785 33.333 0.00 0.00 38.90 4.57
4558 17167 4.392921 TCCTGTCTCCTTCATTCGATTC 57.607 45.455 0.00 0.00 0.00 2.52
4568 17177 1.150135 TGTCTCCCTTCCTGTCTCCTT 59.850 52.381 0.00 0.00 0.00 3.36
4693 17302 0.386352 CAACAGTTGCCGTCATGCTG 60.386 55.000 0.00 0.00 34.16 4.41
4733 17342 6.357367 CAGCATGTACCCTCCTAAGTTATTT 58.643 40.000 0.00 0.00 0.00 1.40
4739 17348 1.417890 CCCAGCATGTACCCTCCTAAG 59.582 57.143 0.00 0.00 0.00 2.18
4764 17373 1.001633 GGCTCGGTTTGACTGTCCTTA 59.998 52.381 5.17 0.00 0.00 2.69
4765 17374 0.250338 GGCTCGGTTTGACTGTCCTT 60.250 55.000 5.17 0.00 0.00 3.36
4766 17375 1.122019 AGGCTCGGTTTGACTGTCCT 61.122 55.000 5.17 0.00 0.00 3.85
4767 17376 0.606604 TAGGCTCGGTTTGACTGTCC 59.393 55.000 5.17 0.00 0.00 4.02
4768 17377 2.450609 TTAGGCTCGGTTTGACTGTC 57.549 50.000 0.00 0.00 0.00 3.51
4769 17378 2.767505 CTTTAGGCTCGGTTTGACTGT 58.232 47.619 0.00 0.00 0.00 3.55
4770 17379 1.464997 GCTTTAGGCTCGGTTTGACTG 59.535 52.381 0.00 0.00 38.06 3.51
4771 17380 1.809684 GCTTTAGGCTCGGTTTGACT 58.190 50.000 0.00 0.00 38.06 3.41
4772 17381 0.442699 CGCTTTAGGCTCGGTTTGAC 59.557 55.000 0.00 0.00 39.13 3.18
4773 17382 0.319083 TCGCTTTAGGCTCGGTTTGA 59.681 50.000 0.00 0.00 39.13 2.69
4774 17383 0.721718 CTCGCTTTAGGCTCGGTTTG 59.278 55.000 0.00 0.00 39.13 2.93
4775 17384 1.019805 GCTCGCTTTAGGCTCGGTTT 61.020 55.000 0.00 0.00 39.13 3.27
4776 17385 1.448013 GCTCGCTTTAGGCTCGGTT 60.448 57.895 0.00 0.00 39.13 4.44
4777 17386 2.184579 GCTCGCTTTAGGCTCGGT 59.815 61.111 0.00 0.00 39.13 4.69
4778 17387 1.590259 GAGCTCGCTTTAGGCTCGG 60.590 63.158 0.00 0.00 42.03 4.63
4779 17388 4.005032 GAGCTCGCTTTAGGCTCG 57.995 61.111 0.00 0.00 42.03 5.03
4781 17390 0.744281 GAGAGAGCTCGCTTTAGGCT 59.256 55.000 21.50 0.00 39.13 4.58
4782 17391 0.457851 TGAGAGAGCTCGCTTTAGGC 59.542 55.000 21.50 8.67 44.33 3.93
4783 17392 1.535860 GCTGAGAGAGCTCGCTTTAGG 60.536 57.143 21.50 12.19 45.21 2.69
4784 17393 1.838913 GCTGAGAGAGCTCGCTTTAG 58.161 55.000 21.50 20.99 45.21 1.85
4785 17394 0.099613 CGCTGAGAGAGCTCGCTTTA 59.900 55.000 21.50 12.46 46.64 1.85
4786 17395 1.153862 CGCTGAGAGAGCTCGCTTT 60.154 57.895 21.50 0.00 46.64 3.51
4787 17396 2.489285 CGCTGAGAGAGCTCGCTT 59.511 61.111 21.50 5.30 46.64 4.68
4788 17397 4.191950 GCGCTGAGAGAGCTCGCT 62.192 66.667 20.73 20.73 46.64 4.93
4790 17399 3.468266 GAGGCGCTGAGAGAGCTCG 62.468 68.421 7.64 0.00 46.64 5.03
4791 17400 2.340453 CTGAGGCGCTGAGAGAGCTC 62.340 65.000 7.64 5.27 46.64 4.09
4792 17401 2.362247 TGAGGCGCTGAGAGAGCT 60.362 61.111 7.64 0.00 46.64 4.09
4793 17402 1.380403 TACTGAGGCGCTGAGAGAGC 61.380 60.000 7.64 0.00 45.20 4.09
4794 17403 1.098869 TTACTGAGGCGCTGAGAGAG 58.901 55.000 7.64 0.00 0.00 3.20
4795 17404 1.769026 ATTACTGAGGCGCTGAGAGA 58.231 50.000 7.64 0.00 0.00 3.10
4796 17405 2.593346 AATTACTGAGGCGCTGAGAG 57.407 50.000 7.64 0.70 0.00 3.20
4797 17406 3.002791 CAAAATTACTGAGGCGCTGAGA 58.997 45.455 7.64 0.00 0.00 3.27
4798 17407 2.096496 CCAAAATTACTGAGGCGCTGAG 59.904 50.000 7.64 3.11 0.00 3.35
4799 17408 2.083774 CCAAAATTACTGAGGCGCTGA 58.916 47.619 7.64 0.00 0.00 4.26
4800 17409 1.468054 GCCAAAATTACTGAGGCGCTG 60.468 52.381 7.64 0.00 35.42 5.18
4801 17410 0.811281 GCCAAAATTACTGAGGCGCT 59.189 50.000 7.64 0.00 35.42 5.92
4802 17411 0.179137 GGCCAAAATTACTGAGGCGC 60.179 55.000 0.00 0.00 46.12 6.53
4803 17412 0.098728 CGGCCAAAATTACTGAGGCG 59.901 55.000 2.24 0.00 46.12 5.52
4804 17413 1.132453 GACGGCCAAAATTACTGAGGC 59.868 52.381 2.24 0.00 44.48 4.70
4805 17414 2.420022 CTGACGGCCAAAATTACTGAGG 59.580 50.000 2.24 0.00 0.00 3.86
4806 17415 3.334691 TCTGACGGCCAAAATTACTGAG 58.665 45.455 2.24 0.00 0.00 3.35
4807 17416 3.410631 TCTGACGGCCAAAATTACTGA 57.589 42.857 2.24 0.00 0.00 3.41
4808 17417 3.941483 AGATCTGACGGCCAAAATTACTG 59.059 43.478 2.24 0.00 0.00 2.74
4809 17418 4.192317 GAGATCTGACGGCCAAAATTACT 58.808 43.478 0.00 0.00 0.00 2.24
4810 17419 3.001330 CGAGATCTGACGGCCAAAATTAC 59.999 47.826 0.00 0.00 0.00 1.89
4811 17420 3.194861 CGAGATCTGACGGCCAAAATTA 58.805 45.455 0.00 0.00 0.00 1.40
4812 17421 2.009774 CGAGATCTGACGGCCAAAATT 58.990 47.619 0.00 0.00 0.00 1.82
4813 17422 1.066143 ACGAGATCTGACGGCCAAAAT 60.066 47.619 0.00 0.00 0.00 1.82
4814 17423 0.320374 ACGAGATCTGACGGCCAAAA 59.680 50.000 0.00 0.00 0.00 2.44
4815 17424 0.320374 AACGAGATCTGACGGCCAAA 59.680 50.000 0.00 0.00 0.00 3.28
4816 17425 0.320374 AAACGAGATCTGACGGCCAA 59.680 50.000 0.00 0.00 0.00 4.52
4817 17426 0.389817 CAAACGAGATCTGACGGCCA 60.390 55.000 0.00 0.00 0.00 5.36
4818 17427 1.696832 GCAAACGAGATCTGACGGCC 61.697 60.000 0.00 0.00 0.00 6.13
4819 17428 1.014044 TGCAAACGAGATCTGACGGC 61.014 55.000 0.00 0.00 0.00 5.68
4820 17429 0.994995 CTGCAAACGAGATCTGACGG 59.005 55.000 0.00 0.00 0.00 4.79
4821 17430 1.982612 TCTGCAAACGAGATCTGACG 58.017 50.000 0.00 0.07 0.00 4.35
4822 17431 2.533535 CGATCTGCAAACGAGATCTGAC 59.466 50.000 0.00 0.00 42.54 3.51
4823 17432 2.164422 ACGATCTGCAAACGAGATCTGA 59.836 45.455 0.00 0.00 42.54 3.27
4824 17433 2.534298 ACGATCTGCAAACGAGATCTG 58.466 47.619 0.00 7.96 42.54 2.90
4825 17434 2.949451 ACGATCTGCAAACGAGATCT 57.051 45.000 12.43 0.00 42.54 2.75
4826 17435 3.999229 AAACGATCTGCAAACGAGATC 57.001 42.857 12.43 8.03 41.68 2.75
4827 17436 3.745975 TGAAAACGATCTGCAAACGAGAT 59.254 39.130 12.43 0.00 32.63 2.75
4828 17437 3.127589 TGAAAACGATCTGCAAACGAGA 58.872 40.909 12.43 0.00 0.00 4.04
4829 17438 3.519908 TGAAAACGATCTGCAAACGAG 57.480 42.857 12.43 0.00 0.00 4.18
4830 17439 4.481930 AATGAAAACGATCTGCAAACGA 57.518 36.364 12.43 0.00 0.00 3.85
4831 17440 5.382303 ACTAATGAAAACGATCTGCAAACG 58.618 37.500 0.00 5.53 0.00 3.60
4832 17441 6.370593 TGACTAATGAAAACGATCTGCAAAC 58.629 36.000 0.00 0.00 0.00 2.93
4833 17442 6.348458 CCTGACTAATGAAAACGATCTGCAAA 60.348 38.462 0.00 0.00 0.00 3.68
4834 17443 5.122239 CCTGACTAATGAAAACGATCTGCAA 59.878 40.000 0.00 0.00 0.00 4.08
4835 17444 4.631377 CCTGACTAATGAAAACGATCTGCA 59.369 41.667 0.00 0.00 0.00 4.41
4836 17445 4.631813 ACCTGACTAATGAAAACGATCTGC 59.368 41.667 0.00 0.00 0.00 4.26
4837 17446 6.337853 GACCTGACTAATGAAAACGATCTG 57.662 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.