Multiple sequence alignment - TraesCS7D01G113000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G113000 chr7D 100.000 2523 0 0 1 2523 69202502 69199980 0.000000e+00 4660
1 TraesCS7D01G113000 chr7D 94.364 1863 69 15 535 2379 503923852 503925696 0.000000e+00 2826
2 TraesCS7D01G113000 chr7D 93.980 1661 54 14 532 2172 629661719 629660085 0.000000e+00 2471
3 TraesCS7D01G113000 chr7D 95.807 1264 43 5 1092 2348 4429142 4430402 0.000000e+00 2032
4 TraesCS7D01G113000 chr7D 95.012 1203 51 9 1180 2379 564083084 564084280 0.000000e+00 1881
5 TraesCS7D01G113000 chr7D 89.858 493 18 2 528 1003 4428280 4428757 2.780000e-169 604
6 TraesCS7D01G113000 chr7D 97.260 73 2 0 5 77 69074279 69074207 9.480000e-25 124
7 TraesCS7D01G113000 chr5D 94.948 1841 68 13 527 2348 435154597 435156431 0.000000e+00 2861
8 TraesCS7D01G113000 chr5D 93.414 1397 58 14 533 1911 124541032 124539652 0.000000e+00 2039
9 TraesCS7D01G113000 chr5D 93.740 1278 45 9 533 1790 565841270 565842532 0.000000e+00 1884
10 TraesCS7D01G113000 chr1D 94.789 1823 71 12 544 2348 22594392 22592576 0.000000e+00 2819
11 TraesCS7D01G113000 chr1D 93.525 278 18 0 536 813 476789518 476789241 5.020000e-112 414
12 TraesCS7D01G113000 chr1D 96.753 154 5 0 2370 2523 319300193 319300346 8.950000e-65 257
13 TraesCS7D01G113000 chr3D 94.688 1826 78 4 541 2348 70093975 70095799 0.000000e+00 2817
14 TraesCS7D01G113000 chr3D 91.967 722 25 7 536 1240 590028812 590029517 0.000000e+00 981
15 TraesCS7D01G113000 chr3D 97.403 154 2 2 2372 2523 175367777 175367624 6.920000e-66 261
16 TraesCS7D01G113000 chr3D 94.083 169 7 2 2356 2523 91770324 91770158 1.160000e-63 254
17 TraesCS7D01G113000 chr3D 93.939 165 8 2 2360 2523 514057990 514058153 5.390000e-62 248
18 TraesCS7D01G113000 chr7A 93.969 1824 86 13 544 2348 668988053 668986235 0.000000e+00 2737
19 TraesCS7D01G113000 chr7A 91.210 1661 99 24 523 2172 695378930 695380554 0.000000e+00 2215
20 TraesCS7D01G113000 chr7A 92.523 535 36 2 5 539 74931419 74930889 0.000000e+00 763
21 TraesCS7D01G113000 chr7A 93.023 172 9 3 2353 2523 192598758 192598589 5.390000e-62 248
22 TraesCS7D01G113000 chr3A 93.555 1831 91 6 536 2348 699108759 699110580 0.000000e+00 2702
23 TraesCS7D01G113000 chr5A 92.787 1636 82 10 732 2348 639271975 639270357 0.000000e+00 2335
24 TraesCS7D01G113000 chr5A 93.939 165 8 2 2360 2523 578809100 578809263 5.390000e-62 248
25 TraesCS7D01G113000 chr7B 84.030 526 76 5 4 528 11022680 11022162 1.350000e-137 499
26 TraesCS7D01G113000 chr4D 95.625 160 3 4 2367 2523 28948632 28948790 1.160000e-63 254
27 TraesCS7D01G113000 chr1A 94.545 165 4 5 2362 2523 345413373 345413211 1.500000e-62 250
28 TraesCS7D01G113000 chr1B 90.811 185 10 7 2341 2523 477993282 477993461 9.020000e-60 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G113000 chr7D 69199980 69202502 2522 True 4660 4660 100.0000 1 2523 1 chr7D.!!$R2 2522
1 TraesCS7D01G113000 chr7D 503923852 503925696 1844 False 2826 2826 94.3640 535 2379 1 chr7D.!!$F1 1844
2 TraesCS7D01G113000 chr7D 629660085 629661719 1634 True 2471 2471 93.9800 532 2172 1 chr7D.!!$R3 1640
3 TraesCS7D01G113000 chr7D 564083084 564084280 1196 False 1881 1881 95.0120 1180 2379 1 chr7D.!!$F2 1199
4 TraesCS7D01G113000 chr7D 4428280 4430402 2122 False 1318 2032 92.8325 528 2348 2 chr7D.!!$F3 1820
5 TraesCS7D01G113000 chr5D 435154597 435156431 1834 False 2861 2861 94.9480 527 2348 1 chr5D.!!$F1 1821
6 TraesCS7D01G113000 chr5D 124539652 124541032 1380 True 2039 2039 93.4140 533 1911 1 chr5D.!!$R1 1378
7 TraesCS7D01G113000 chr5D 565841270 565842532 1262 False 1884 1884 93.7400 533 1790 1 chr5D.!!$F2 1257
8 TraesCS7D01G113000 chr1D 22592576 22594392 1816 True 2819 2819 94.7890 544 2348 1 chr1D.!!$R1 1804
9 TraesCS7D01G113000 chr3D 70093975 70095799 1824 False 2817 2817 94.6880 541 2348 1 chr3D.!!$F1 1807
10 TraesCS7D01G113000 chr3D 590028812 590029517 705 False 981 981 91.9670 536 1240 1 chr3D.!!$F3 704
11 TraesCS7D01G113000 chr7A 668986235 668988053 1818 True 2737 2737 93.9690 544 2348 1 chr7A.!!$R3 1804
12 TraesCS7D01G113000 chr7A 695378930 695380554 1624 False 2215 2215 91.2100 523 2172 1 chr7A.!!$F1 1649
13 TraesCS7D01G113000 chr7A 74930889 74931419 530 True 763 763 92.5230 5 539 1 chr7A.!!$R1 534
14 TraesCS7D01G113000 chr3A 699108759 699110580 1821 False 2702 2702 93.5550 536 2348 1 chr3A.!!$F1 1812
15 TraesCS7D01G113000 chr5A 639270357 639271975 1618 True 2335 2335 92.7870 732 2348 1 chr5A.!!$R1 1616
16 TraesCS7D01G113000 chr7B 11022162 11022680 518 True 499 499 84.0300 4 528 1 chr7B.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.032615 TGAAGGCAGGTGGTGGTTTT 60.033 50.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2948 0.168128 CGAAAACTGTTGCGATCCCC 59.832 55.0 9.57 0.0 38.11 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.897141 AACTAAGGGAGACTAGCTTGC 57.103 47.619 0.00 0.00 0.00 4.01
93 94 1.265095 GCATACCGCAATGATCCTGTG 59.735 52.381 0.00 0.00 41.79 3.66
101 102 3.208594 GCAATGATCCTGTGCATCAGTA 58.791 45.455 13.06 1.03 42.19 2.74
141 142 3.516981 ATCGACAACACTGAGATGGAG 57.483 47.619 0.00 0.00 0.00 3.86
148 149 5.624159 ACAACACTGAGATGGAGAAAATCA 58.376 37.500 0.00 0.00 0.00 2.57
178 179 0.972134 CTGAGTCACTCAAGGCAGGA 59.028 55.000 9.30 0.00 40.18 3.86
213 214 3.477956 AACCTCCCCACCCGTGAGA 62.478 63.158 0.00 0.00 0.00 3.27
214 215 3.391382 CCTCCCCACCCGTGAGAC 61.391 72.222 0.00 0.00 0.00 3.36
260 261 3.417275 CTGCTAGAGGTCACCGGCG 62.417 68.421 0.00 0.00 0.00 6.46
278 279 1.891919 GGGCAAAGCTCGTGTGACA 60.892 57.895 0.00 0.00 0.00 3.58
281 282 0.233332 GCAAAGCTCGTGTGACAGAC 59.767 55.000 0.00 0.00 0.00 3.51
287 288 3.036084 CGTGTGACAGACGGCACC 61.036 66.667 16.80 0.00 34.19 5.01
288 289 3.036084 GTGTGACAGACGGCACCG 61.036 66.667 7.71 7.71 46.03 4.94
302 303 2.039624 ACCGGCTGGAGTCCATCT 59.960 61.111 21.41 0.00 39.21 2.90
356 357 3.300388 CTGCCTCTCAGGTATCTTGGTA 58.700 50.000 0.00 0.00 37.80 3.25
358 359 3.706594 TGCCTCTCAGGTATCTTGGTAAG 59.293 47.826 0.00 0.00 37.80 2.34
359 360 3.070302 GCCTCTCAGGTATCTTGGTAAGG 59.930 52.174 0.00 0.00 37.80 2.69
360 361 4.547671 CCTCTCAGGTATCTTGGTAAGGA 58.452 47.826 0.00 0.00 0.00 3.36
361 362 5.151454 CCTCTCAGGTATCTTGGTAAGGAT 58.849 45.833 0.00 0.00 0.00 3.24
362 363 5.604650 CCTCTCAGGTATCTTGGTAAGGATT 59.395 44.000 0.00 0.00 0.00 3.01
363 364 6.100424 CCTCTCAGGTATCTTGGTAAGGATTT 59.900 42.308 0.00 0.00 0.00 2.17
364 365 6.889198 TCTCAGGTATCTTGGTAAGGATTTG 58.111 40.000 0.00 0.00 0.00 2.32
365 366 6.443849 TCTCAGGTATCTTGGTAAGGATTTGT 59.556 38.462 0.00 0.00 0.00 2.83
366 367 7.027874 TCAGGTATCTTGGTAAGGATTTGTT 57.972 36.000 0.00 0.00 0.00 2.83
367 368 7.110155 TCAGGTATCTTGGTAAGGATTTGTTC 58.890 38.462 0.00 0.00 0.00 3.18
368 369 7.037586 TCAGGTATCTTGGTAAGGATTTGTTCT 60.038 37.037 0.00 0.00 0.00 3.01
369 370 8.265055 CAGGTATCTTGGTAAGGATTTGTTCTA 58.735 37.037 0.00 0.00 0.00 2.10
370 371 8.265764 AGGTATCTTGGTAAGGATTTGTTCTAC 58.734 37.037 0.00 0.00 0.00 2.59
371 372 8.044908 GGTATCTTGGTAAGGATTTGTTCTACA 58.955 37.037 0.00 0.00 0.00 2.74
372 373 9.099454 GTATCTTGGTAAGGATTTGTTCTACAG 57.901 37.037 0.00 0.00 0.00 2.74
373 374 5.938125 TCTTGGTAAGGATTTGTTCTACAGC 59.062 40.000 0.00 0.00 0.00 4.40
374 375 4.250464 TGGTAAGGATTTGTTCTACAGCG 58.750 43.478 0.00 0.00 0.00 5.18
375 376 4.020928 TGGTAAGGATTTGTTCTACAGCGA 60.021 41.667 0.00 0.00 0.00 4.93
376 377 4.933400 GGTAAGGATTTGTTCTACAGCGAA 59.067 41.667 0.00 0.00 0.00 4.70
377 378 5.585047 GGTAAGGATTTGTTCTACAGCGAAT 59.415 40.000 0.00 0.00 0.00 3.34
378 379 5.551760 AAGGATTTGTTCTACAGCGAATG 57.448 39.130 0.00 0.00 0.00 2.67
379 380 4.579869 AGGATTTGTTCTACAGCGAATGT 58.420 39.130 0.00 0.00 46.45 2.71
380 381 5.003804 AGGATTTGTTCTACAGCGAATGTT 58.996 37.500 0.00 0.00 39.96 2.71
381 382 5.473504 AGGATTTGTTCTACAGCGAATGTTT 59.526 36.000 0.00 0.00 39.96 2.83
382 383 6.653320 AGGATTTGTTCTACAGCGAATGTTTA 59.347 34.615 0.00 0.00 39.96 2.01
383 384 6.961554 GGATTTGTTCTACAGCGAATGTTTAG 59.038 38.462 0.00 0.00 39.96 1.85
384 385 5.856126 TTGTTCTACAGCGAATGTTTAGG 57.144 39.130 0.00 0.00 39.96 2.69
385 386 3.682858 TGTTCTACAGCGAATGTTTAGGC 59.317 43.478 0.00 0.00 39.96 3.93
386 387 3.603158 TCTACAGCGAATGTTTAGGCA 57.397 42.857 0.00 0.00 39.96 4.75
387 388 3.259064 TCTACAGCGAATGTTTAGGCAC 58.741 45.455 0.00 0.00 39.96 5.01
388 389 1.890876 ACAGCGAATGTTTAGGCACA 58.109 45.000 0.00 0.00 39.96 4.57
389 390 1.806542 ACAGCGAATGTTTAGGCACAG 59.193 47.619 0.00 0.00 39.96 3.66
390 391 2.076100 CAGCGAATGTTTAGGCACAGA 58.924 47.619 0.00 0.00 0.00 3.41
391 392 2.094894 CAGCGAATGTTTAGGCACAGAG 59.905 50.000 0.00 0.00 0.00 3.35
392 393 1.202076 GCGAATGTTTAGGCACAGAGC 60.202 52.381 0.00 0.00 44.65 4.09
393 394 2.350522 CGAATGTTTAGGCACAGAGCT 58.649 47.619 0.00 0.00 44.79 4.09
394 395 2.094894 CGAATGTTTAGGCACAGAGCTG 59.905 50.000 0.00 0.00 44.79 4.24
395 396 2.867109 ATGTTTAGGCACAGAGCTGT 57.133 45.000 0.00 0.00 46.17 4.40
396 397 2.169832 TGTTTAGGCACAGAGCTGTC 57.830 50.000 0.00 0.00 42.83 3.51
397 398 1.270839 TGTTTAGGCACAGAGCTGTCC 60.271 52.381 0.00 5.72 42.83 4.02
398 399 1.055849 TTTAGGCACAGAGCTGTCCA 58.944 50.000 16.14 5.31 42.83 4.02
399 400 0.610174 TTAGGCACAGAGCTGTCCAG 59.390 55.000 16.14 3.12 42.83 3.86
400 401 0.251787 TAGGCACAGAGCTGTCCAGA 60.252 55.000 16.14 6.07 42.83 3.86
401 402 1.079266 GGCACAGAGCTGTCCAGAG 60.079 63.158 0.00 0.00 42.83 3.35
402 403 1.670590 GCACAGAGCTGTCCAGAGT 59.329 57.895 0.00 0.00 42.83 3.24
403 404 0.034616 GCACAGAGCTGTCCAGAGTT 59.965 55.000 0.00 0.00 42.83 3.01
404 405 1.273606 GCACAGAGCTGTCCAGAGTTA 59.726 52.381 0.00 0.00 42.83 2.24
405 406 2.673610 GCACAGAGCTGTCCAGAGTTAG 60.674 54.545 0.00 0.00 42.83 2.34
406 407 2.822561 CACAGAGCTGTCCAGAGTTAGA 59.177 50.000 0.00 0.00 42.83 2.10
407 408 3.088532 ACAGAGCTGTCCAGAGTTAGAG 58.911 50.000 0.00 0.00 40.24 2.43
408 409 3.088532 CAGAGCTGTCCAGAGTTAGAGT 58.911 50.000 0.00 0.00 0.00 3.24
409 410 3.088532 AGAGCTGTCCAGAGTTAGAGTG 58.911 50.000 0.00 0.00 0.00 3.51
410 411 2.165437 GAGCTGTCCAGAGTTAGAGTGG 59.835 54.545 0.00 0.00 0.00 4.00
411 412 1.404851 GCTGTCCAGAGTTAGAGTGGC 60.405 57.143 0.00 0.00 0.00 5.01
412 413 1.895798 CTGTCCAGAGTTAGAGTGGCA 59.104 52.381 0.00 0.00 0.00 4.92
413 414 2.499289 CTGTCCAGAGTTAGAGTGGCAT 59.501 50.000 0.00 0.00 0.00 4.40
414 415 2.497675 TGTCCAGAGTTAGAGTGGCATC 59.502 50.000 0.00 0.00 0.00 3.91
415 416 2.763448 GTCCAGAGTTAGAGTGGCATCT 59.237 50.000 0.00 0.00 0.00 2.90
416 417 2.762887 TCCAGAGTTAGAGTGGCATCTG 59.237 50.000 5.28 5.28 35.14 2.90
417 418 2.762887 CCAGAGTTAGAGTGGCATCTGA 59.237 50.000 12.34 1.48 37.03 3.27
418 419 3.196469 CCAGAGTTAGAGTGGCATCTGAA 59.804 47.826 12.34 0.00 37.03 3.02
419 420 4.431809 CAGAGTTAGAGTGGCATCTGAAG 58.568 47.826 6.21 0.00 37.03 3.02
420 421 3.450457 AGAGTTAGAGTGGCATCTGAAGG 59.550 47.826 8.95 0.00 0.00 3.46
421 422 2.093235 AGTTAGAGTGGCATCTGAAGGC 60.093 50.000 0.00 0.00 0.00 4.35
422 423 1.571955 TAGAGTGGCATCTGAAGGCA 58.428 50.000 4.96 4.96 39.41 4.75
423 424 0.252479 AGAGTGGCATCTGAAGGCAG 59.748 55.000 9.49 0.00 42.55 4.85
424 425 0.747283 GAGTGGCATCTGAAGGCAGG 60.747 60.000 9.49 0.00 42.55 4.85
425 426 1.001641 GTGGCATCTGAAGGCAGGT 60.002 57.895 9.49 0.00 42.55 4.00
430 431 1.687612 ATCTGAAGGCAGGTGGTGG 59.312 57.895 0.00 0.00 42.53 4.61
431 432 1.136329 ATCTGAAGGCAGGTGGTGGT 61.136 55.000 0.00 0.00 42.53 4.16
432 433 1.151450 CTGAAGGCAGGTGGTGGTT 59.849 57.895 0.00 0.00 38.51 3.67
433 434 0.468029 CTGAAGGCAGGTGGTGGTTT 60.468 55.000 0.00 0.00 38.51 3.27
434 435 0.032615 TGAAGGCAGGTGGTGGTTTT 60.033 50.000 0.00 0.00 0.00 2.43
435 436 0.389025 GAAGGCAGGTGGTGGTTTTG 59.611 55.000 0.00 0.00 0.00 2.44
436 437 1.048160 AAGGCAGGTGGTGGTTTTGG 61.048 55.000 0.00 0.00 0.00 3.28
437 438 2.506957 GGCAGGTGGTGGTTTTGGG 61.507 63.158 0.00 0.00 0.00 4.12
438 439 2.506957 GCAGGTGGTGGTTTTGGGG 61.507 63.158 0.00 0.00 0.00 4.96
439 440 2.123033 AGGTGGTGGTTTTGGGGC 60.123 61.111 0.00 0.00 0.00 5.80
440 441 3.238497 GGTGGTGGTTTTGGGGCC 61.238 66.667 0.00 0.00 0.00 5.80
441 442 2.123033 GTGGTGGTTTTGGGGCCT 60.123 61.111 0.84 0.00 0.00 5.19
442 443 2.200092 TGGTGGTTTTGGGGCCTC 59.800 61.111 0.84 0.00 0.00 4.70
443 444 2.200092 GGTGGTTTTGGGGCCTCA 59.800 61.111 0.00 0.00 0.00 3.86
444 445 1.458588 GGTGGTTTTGGGGCCTCAA 60.459 57.895 16.07 16.07 0.00 3.02
445 446 1.471829 GGTGGTTTTGGGGCCTCAAG 61.472 60.000 19.55 0.00 0.00 3.02
446 447 1.152355 TGGTTTTGGGGCCTCAAGG 60.152 57.895 19.55 0.00 38.53 3.61
468 469 2.745884 CAGGCCCGCACGAATCAA 60.746 61.111 0.00 0.00 0.00 2.57
469 470 2.033448 AGGCCCGCACGAATCAAA 59.967 55.556 0.00 0.00 0.00 2.69
470 471 2.040544 AGGCCCGCACGAATCAAAG 61.041 57.895 0.00 0.00 0.00 2.77
471 472 2.038269 GGCCCGCACGAATCAAAGA 61.038 57.895 0.00 0.00 0.00 2.52
472 473 1.582610 GGCCCGCACGAATCAAAGAA 61.583 55.000 0.00 0.00 0.00 2.52
473 474 0.451783 GCCCGCACGAATCAAAGAAT 59.548 50.000 0.00 0.00 0.00 2.40
474 475 1.531883 GCCCGCACGAATCAAAGAATC 60.532 52.381 0.00 0.00 0.00 2.52
475 476 2.009774 CCCGCACGAATCAAAGAATCT 58.990 47.619 0.00 0.00 0.00 2.40
476 477 3.194861 CCCGCACGAATCAAAGAATCTA 58.805 45.455 0.00 0.00 0.00 1.98
477 478 3.809832 CCCGCACGAATCAAAGAATCTAT 59.190 43.478 0.00 0.00 0.00 1.98
478 479 4.319046 CCCGCACGAATCAAAGAATCTATG 60.319 45.833 0.00 0.00 0.00 2.23
479 480 4.206843 CGCACGAATCAAAGAATCTATGC 58.793 43.478 0.00 0.00 0.00 3.14
480 481 4.206843 GCACGAATCAAAGAATCTATGCG 58.793 43.478 0.00 0.00 0.00 4.73
481 482 4.260375 GCACGAATCAAAGAATCTATGCGT 60.260 41.667 0.00 0.00 0.00 5.24
482 483 5.427082 CACGAATCAAAGAATCTATGCGTC 58.573 41.667 0.00 0.00 0.00 5.19
483 484 4.207224 ACGAATCAAAGAATCTATGCGTCG 59.793 41.667 0.00 0.00 0.00 5.12
484 485 4.207224 CGAATCAAAGAATCTATGCGTCGT 59.793 41.667 0.00 0.00 0.00 4.34
485 486 5.276395 CGAATCAAAGAATCTATGCGTCGTT 60.276 40.000 0.00 0.00 0.00 3.85
486 487 4.840401 TCAAAGAATCTATGCGTCGTTG 57.160 40.909 0.00 0.00 33.68 4.10
487 488 4.242475 TCAAAGAATCTATGCGTCGTTGT 58.758 39.130 0.00 0.00 33.96 3.32
488 489 5.404096 TCAAAGAATCTATGCGTCGTTGTA 58.596 37.500 0.00 0.00 33.96 2.41
489 490 5.287752 TCAAAGAATCTATGCGTCGTTGTAC 59.712 40.000 0.00 0.00 33.96 2.90
490 491 3.703420 AGAATCTATGCGTCGTTGTACC 58.297 45.455 0.00 0.00 0.00 3.34
491 492 3.380637 AGAATCTATGCGTCGTTGTACCT 59.619 43.478 0.00 0.00 0.00 3.08
492 493 3.795623 ATCTATGCGTCGTTGTACCTT 57.204 42.857 0.00 0.00 0.00 3.50
493 494 2.871133 TCTATGCGTCGTTGTACCTTG 58.129 47.619 0.00 0.00 0.00 3.61
494 495 2.488937 TCTATGCGTCGTTGTACCTTGA 59.511 45.455 0.00 0.00 0.00 3.02
495 496 2.380084 ATGCGTCGTTGTACCTTGAT 57.620 45.000 0.00 0.00 0.00 2.57
496 497 3.513680 ATGCGTCGTTGTACCTTGATA 57.486 42.857 0.00 0.00 0.00 2.15
497 498 2.598589 TGCGTCGTTGTACCTTGATAC 58.401 47.619 0.00 0.00 0.00 2.24
498 499 2.030096 TGCGTCGTTGTACCTTGATACA 60.030 45.455 0.00 0.00 33.18 2.29
499 500 2.343544 GCGTCGTTGTACCTTGATACAC 59.656 50.000 0.00 0.00 34.79 2.90
500 501 3.829948 CGTCGTTGTACCTTGATACACT 58.170 45.455 0.00 0.00 34.79 3.55
501 502 4.672542 GCGTCGTTGTACCTTGATACACTA 60.673 45.833 0.00 0.00 34.79 2.74
502 503 4.790140 CGTCGTTGTACCTTGATACACTAC 59.210 45.833 0.00 0.00 34.79 2.73
503 504 5.617529 CGTCGTTGTACCTTGATACACTACA 60.618 44.000 0.00 0.00 34.79 2.74
504 505 5.570589 GTCGTTGTACCTTGATACACTACAC 59.429 44.000 0.00 0.00 34.79 2.90
505 506 4.860907 CGTTGTACCTTGATACACTACACC 59.139 45.833 0.00 0.00 34.79 4.16
506 507 4.707030 TGTACCTTGATACACTACACCG 57.293 45.455 0.00 0.00 29.97 4.94
507 508 4.334552 TGTACCTTGATACACTACACCGA 58.665 43.478 0.00 0.00 29.97 4.69
508 509 4.397103 TGTACCTTGATACACTACACCGAG 59.603 45.833 0.00 0.00 29.97 4.63
509 510 2.758979 ACCTTGATACACTACACCGAGG 59.241 50.000 0.00 0.00 35.14 4.63
510 511 2.758979 CCTTGATACACTACACCGAGGT 59.241 50.000 0.00 0.00 0.00 3.85
511 512 3.181489 CCTTGATACACTACACCGAGGTC 60.181 52.174 0.00 0.00 0.00 3.85
512 513 3.076079 TGATACACTACACCGAGGTCA 57.924 47.619 0.00 0.00 0.00 4.02
513 514 3.423749 TGATACACTACACCGAGGTCAA 58.576 45.455 0.00 0.00 0.00 3.18
514 515 3.442625 TGATACACTACACCGAGGTCAAG 59.557 47.826 0.00 0.00 0.00 3.02
515 516 0.317479 ACACTACACCGAGGTCAAGC 59.683 55.000 0.00 0.00 0.00 4.01
516 517 0.317160 CACTACACCGAGGTCAAGCA 59.683 55.000 0.00 0.00 0.00 3.91
517 518 1.066858 CACTACACCGAGGTCAAGCAT 60.067 52.381 0.00 0.00 0.00 3.79
518 519 1.204941 ACTACACCGAGGTCAAGCATC 59.795 52.381 0.00 0.00 0.00 3.91
519 520 0.535335 TACACCGAGGTCAAGCATCC 59.465 55.000 0.00 0.00 0.00 3.51
520 521 1.194781 ACACCGAGGTCAAGCATCCT 61.195 55.000 0.00 0.00 36.70 3.24
521 522 0.824109 CACCGAGGTCAAGCATCCTA 59.176 55.000 0.00 0.00 33.83 2.94
530 531 3.440522 GGTCAAGCATCCTAGGTGTTTTC 59.559 47.826 9.08 6.53 0.00 2.29
574 575 3.123621 GCGACGTCTTTGAGATGAATTGT 59.876 43.478 14.70 0.00 34.89 2.71
650 651 3.282021 ACAATAGCTCCAATGCGACATT 58.718 40.909 0.00 0.00 38.13 2.71
707 708 5.944007 GGGTTAGTGGTTTGAGTTATGACAT 59.056 40.000 0.00 0.00 0.00 3.06
787 788 2.433436 GGACCCACAACTTATCCACAC 58.567 52.381 0.00 0.00 0.00 3.82
1178 1554 1.261480 CGGTGGATCTGATCTAGGGG 58.739 60.000 16.61 0.44 0.00 4.79
1204 1580 1.004679 GCCGTCGACCCCTGTTTAA 60.005 57.895 10.58 0.00 0.00 1.52
1208 1584 1.670967 CGTCGACCCCTGTTTAACCTC 60.671 57.143 10.58 0.00 0.00 3.85
1288 1728 3.226347 GTTGAAATTCGAGGCTTCAACG 58.774 45.455 22.38 0.00 45.13 4.10
1348 1890 2.550606 GGAACACGCTTCACATTTGGTA 59.449 45.455 0.00 0.00 0.00 3.25
1434 1976 4.784710 GCAACTAAAGCAGCTGATCGATTC 60.785 45.833 20.43 0.00 0.00 2.52
1516 2060 9.528018 GGTTTCTTTTACTTGATGTTCATCAAA 57.472 29.630 22.72 11.14 39.73 2.69
1689 2234 6.823286 TTCTGGTAATGATATTCAGACCCA 57.177 37.500 8.22 0.00 36.18 4.51
1690 2235 7.392766 TTCTGGTAATGATATTCAGACCCAT 57.607 36.000 8.22 0.00 36.18 4.00
1756 2302 4.245660 TCTTGTAACTGAATCGAAGCAGG 58.754 43.478 18.42 3.97 36.47 4.85
1773 2319 3.461085 AGCAGGGATATCCAGTGTTCATT 59.539 43.478 23.27 3.31 38.24 2.57
1807 2353 3.381045 TCTTCAGTTAACAGAGTGCACG 58.619 45.455 12.01 0.00 0.00 5.34
1886 2433 1.928868 AACCAGGCCCAAATTGAGAG 58.071 50.000 0.00 0.00 0.00 3.20
1944 2492 1.392589 CATAGAGGCGCCCATGTTTT 58.607 50.000 26.15 0.94 0.00 2.43
1949 2499 2.831526 AGAGGCGCCCATGTTTTAAAAT 59.168 40.909 26.15 0.00 0.00 1.82
1950 2500 4.020543 AGAGGCGCCCATGTTTTAAAATA 58.979 39.130 26.15 1.41 0.00 1.40
2125 2676 9.674068 TTACATATTTGTTGCTTGTCCACTATA 57.326 29.630 0.00 0.00 37.28 1.31
2291 2842 6.183360 TGCTCTAAAAATATTGGCCAGATGTG 60.183 38.462 5.11 0.00 0.00 3.21
2382 2933 9.709495 AATTATTTGTGTTAGTTGCATGTTGAT 57.291 25.926 0.00 0.00 0.00 2.57
2385 2936 7.922505 TTTGTGTTAGTTGCATGTTGATAAC 57.077 32.000 0.00 0.83 0.00 1.89
2386 2937 6.007936 TGTGTTAGTTGCATGTTGATAACC 57.992 37.500 0.00 0.00 0.00 2.85
2387 2938 5.048364 TGTGTTAGTTGCATGTTGATAACCC 60.048 40.000 0.00 0.00 0.00 4.11
2388 2939 4.155099 TGTTAGTTGCATGTTGATAACCCG 59.845 41.667 0.00 0.00 0.00 5.28
2389 2940 1.472480 AGTTGCATGTTGATAACCCGC 59.528 47.619 0.00 0.00 0.00 6.13
2390 2941 1.201181 GTTGCATGTTGATAACCCGCA 59.799 47.619 0.00 0.00 36.25 5.69
2391 2942 1.539157 TGCATGTTGATAACCCGCAA 58.461 45.000 0.00 0.00 35.46 4.85
2392 2943 1.472082 TGCATGTTGATAACCCGCAAG 59.528 47.619 0.00 0.00 35.46 4.01
2393 2944 1.472480 GCATGTTGATAACCCGCAAGT 59.528 47.619 0.00 0.00 0.00 3.16
2394 2945 2.680841 GCATGTTGATAACCCGCAAGTA 59.319 45.455 0.00 0.00 0.00 2.24
2395 2946 3.315191 GCATGTTGATAACCCGCAAGTAT 59.685 43.478 0.00 0.00 0.00 2.12
2396 2947 4.513692 GCATGTTGATAACCCGCAAGTATA 59.486 41.667 0.00 0.00 0.00 1.47
2397 2948 5.334105 GCATGTTGATAACCCGCAAGTATAG 60.334 44.000 0.00 0.00 0.00 1.31
2398 2949 4.699637 TGTTGATAACCCGCAAGTATAGG 58.300 43.478 0.00 0.00 0.00 2.57
2404 2955 0.246635 CCCGCAAGTATAGGGGATCG 59.753 60.000 0.00 0.00 42.59 3.69
2405 2956 0.389948 CCGCAAGTATAGGGGATCGC 60.390 60.000 0.06 0.06 41.25 4.58
2406 2957 0.317160 CGCAAGTATAGGGGATCGCA 59.683 55.000 12.32 0.00 0.00 5.10
2407 2958 1.270094 CGCAAGTATAGGGGATCGCAA 60.270 52.381 12.32 0.00 0.00 4.85
2408 2959 2.143925 GCAAGTATAGGGGATCGCAAC 58.856 52.381 12.32 4.19 0.00 4.17
2409 2960 2.484770 GCAAGTATAGGGGATCGCAACA 60.485 50.000 12.32 0.00 0.00 3.33
2410 2961 3.393800 CAAGTATAGGGGATCGCAACAG 58.606 50.000 12.32 0.00 0.00 3.16
2411 2962 2.679082 AGTATAGGGGATCGCAACAGT 58.321 47.619 12.32 0.00 0.00 3.55
2412 2963 3.039011 AGTATAGGGGATCGCAACAGTT 58.961 45.455 12.32 0.00 0.00 3.16
2413 2964 3.454812 AGTATAGGGGATCGCAACAGTTT 59.545 43.478 12.32 0.00 0.00 2.66
2414 2965 2.871096 TAGGGGATCGCAACAGTTTT 57.129 45.000 12.32 0.00 0.00 2.43
2415 2966 1.534729 AGGGGATCGCAACAGTTTTC 58.465 50.000 12.32 0.00 0.00 2.29
2416 2967 0.168128 GGGGATCGCAACAGTTTTCG 59.832 55.000 12.32 0.00 0.00 3.46
2417 2968 1.153353 GGGATCGCAACAGTTTTCGA 58.847 50.000 4.64 9.18 35.34 3.71
2418 2969 1.128692 GGGATCGCAACAGTTTTCGAG 59.871 52.381 4.64 0.00 34.30 4.04
2419 2970 1.128692 GGATCGCAACAGTTTTCGAGG 59.871 52.381 11.65 0.00 34.30 4.63
2420 2971 1.128692 GATCGCAACAGTTTTCGAGGG 59.871 52.381 11.65 0.00 34.30 4.30
2421 2972 0.179067 TCGCAACAGTTTTCGAGGGT 60.179 50.000 3.87 0.00 0.00 4.34
2422 2973 1.068895 TCGCAACAGTTTTCGAGGGTA 59.931 47.619 3.87 0.00 0.00 3.69
2423 2974 1.459592 CGCAACAGTTTTCGAGGGTAG 59.540 52.381 0.00 0.00 0.00 3.18
2424 2975 2.762745 GCAACAGTTTTCGAGGGTAGA 58.237 47.619 0.00 0.00 0.00 2.59
2425 2976 2.737252 GCAACAGTTTTCGAGGGTAGAG 59.263 50.000 0.00 0.00 0.00 2.43
2426 2977 3.802675 GCAACAGTTTTCGAGGGTAGAGT 60.803 47.826 0.00 0.00 0.00 3.24
2427 2978 4.560108 GCAACAGTTTTCGAGGGTAGAGTA 60.560 45.833 0.00 0.00 0.00 2.59
2428 2979 5.721232 CAACAGTTTTCGAGGGTAGAGTAT 58.279 41.667 0.00 0.00 0.00 2.12
2429 2980 5.997384 ACAGTTTTCGAGGGTAGAGTATT 57.003 39.130 0.00 0.00 0.00 1.89
2430 2981 5.963594 ACAGTTTTCGAGGGTAGAGTATTC 58.036 41.667 0.00 0.00 0.00 1.75
2431 2982 5.479375 ACAGTTTTCGAGGGTAGAGTATTCA 59.521 40.000 0.00 0.00 0.00 2.57
2432 2983 6.014840 ACAGTTTTCGAGGGTAGAGTATTCAA 60.015 38.462 0.00 0.00 0.00 2.69
2433 2984 6.310711 CAGTTTTCGAGGGTAGAGTATTCAAC 59.689 42.308 0.00 0.00 0.00 3.18
2434 2985 4.996788 TTCGAGGGTAGAGTATTCAACC 57.003 45.455 0.00 0.00 0.00 3.77
2450 3001 9.801873 AGTATTCAACCCAAATTTATTGATTCG 57.198 29.630 10.73 0.00 31.45 3.34
2451 3002 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
2452 3003 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
2453 3004 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
2454 3005 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
2455 3006 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
2456 3007 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
2457 3008 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
2458 3009 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
2459 3010 6.531240 CCAAATTTATTGATTCGACACAAGGG 59.469 38.462 8.90 0.00 0.00 3.95
2460 3011 7.312154 CAAATTTATTGATTCGACACAAGGGA 58.688 34.615 8.90 0.00 0.00 4.20
2461 3012 6.683974 ATTTATTGATTCGACACAAGGGAG 57.316 37.500 8.90 0.00 0.00 4.30
2462 3013 1.808411 TTGATTCGACACAAGGGAGC 58.192 50.000 0.00 0.00 0.00 4.70
2463 3014 0.036388 TGATTCGACACAAGGGAGCC 60.036 55.000 0.00 0.00 0.00 4.70
2464 3015 0.036388 GATTCGACACAAGGGAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
2465 3016 0.400213 ATTCGACACAAGGGAGCCAA 59.600 50.000 0.00 0.00 0.00 4.52
2466 3017 0.181587 TTCGACACAAGGGAGCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
2467 3018 0.250295 TCGACACAAGGGAGCCAAAG 60.250 55.000 0.00 0.00 0.00 2.77
2468 3019 0.250295 CGACACAAGGGAGCCAAAGA 60.250 55.000 0.00 0.00 0.00 2.52
2469 3020 1.611673 CGACACAAGGGAGCCAAAGAT 60.612 52.381 0.00 0.00 0.00 2.40
2470 3021 2.519013 GACACAAGGGAGCCAAAGATT 58.481 47.619 0.00 0.00 0.00 2.40
2471 3022 3.686016 GACACAAGGGAGCCAAAGATTA 58.314 45.455 0.00 0.00 0.00 1.75
2472 3023 4.273318 GACACAAGGGAGCCAAAGATTAT 58.727 43.478 0.00 0.00 0.00 1.28
2473 3024 4.677182 ACACAAGGGAGCCAAAGATTATT 58.323 39.130 0.00 0.00 0.00 1.40
2474 3025 4.706962 ACACAAGGGAGCCAAAGATTATTC 59.293 41.667 0.00 0.00 0.00 1.75
2475 3026 4.952335 CACAAGGGAGCCAAAGATTATTCT 59.048 41.667 0.00 0.00 0.00 2.40
2476 3027 5.067023 CACAAGGGAGCCAAAGATTATTCTC 59.933 44.000 0.00 0.00 0.00 2.87
2477 3028 5.195940 CAAGGGAGCCAAAGATTATTCTCA 58.804 41.667 0.00 0.00 0.00 3.27
2478 3029 5.456921 AGGGAGCCAAAGATTATTCTCAA 57.543 39.130 0.00 0.00 0.00 3.02
2479 3030 5.444176 AGGGAGCCAAAGATTATTCTCAAG 58.556 41.667 0.00 0.00 0.00 3.02
2480 3031 5.044550 AGGGAGCCAAAGATTATTCTCAAGT 60.045 40.000 0.00 0.00 0.00 3.16
2481 3032 6.158695 AGGGAGCCAAAGATTATTCTCAAGTA 59.841 38.462 0.00 0.00 0.00 2.24
2482 3033 7.001073 GGGAGCCAAAGATTATTCTCAAGTAT 58.999 38.462 0.00 0.00 0.00 2.12
2483 3034 7.503902 GGGAGCCAAAGATTATTCTCAAGTATT 59.496 37.037 0.00 0.00 0.00 1.89
2484 3035 9.561069 GGAGCCAAAGATTATTCTCAAGTATTA 57.439 33.333 0.00 0.00 0.00 0.98
2486 3037 9.061435 AGCCAAAGATTATTCTCAAGTATTAGC 57.939 33.333 0.00 0.00 0.00 3.09
2487 3038 8.840321 GCCAAAGATTATTCTCAAGTATTAGCA 58.160 33.333 0.00 0.00 0.00 3.49
2489 3040 9.875675 CAAAGATTATTCTCAAGTATTAGCAGC 57.124 33.333 0.00 0.00 0.00 5.25
2490 3041 9.844257 AAAGATTATTCTCAAGTATTAGCAGCT 57.156 29.630 0.00 0.00 0.00 4.24
2491 3042 8.830201 AGATTATTCTCAAGTATTAGCAGCTG 57.170 34.615 10.11 10.11 0.00 4.24
2492 3043 8.646004 AGATTATTCTCAAGTATTAGCAGCTGA 58.354 33.333 20.43 0.00 0.00 4.26
2493 3044 8.830201 ATTATTCTCAAGTATTAGCAGCTGAG 57.170 34.615 20.43 1.96 0.00 3.35
2494 3045 5.667539 TTCTCAAGTATTAGCAGCTGAGT 57.332 39.130 20.43 6.02 0.00 3.41
2495 3046 5.667539 TCTCAAGTATTAGCAGCTGAGTT 57.332 39.130 20.43 1.83 0.00 3.01
2496 3047 5.414360 TCTCAAGTATTAGCAGCTGAGTTG 58.586 41.667 20.43 15.03 0.00 3.16
2497 3048 5.047021 TCTCAAGTATTAGCAGCTGAGTTGT 60.047 40.000 20.43 0.85 0.00 3.32
2498 3049 5.171476 TCAAGTATTAGCAGCTGAGTTGTC 58.829 41.667 20.43 0.00 0.00 3.18
2499 3050 4.808414 AGTATTAGCAGCTGAGTTGTCA 57.192 40.909 20.43 0.00 0.00 3.58
2500 3051 5.152623 AGTATTAGCAGCTGAGTTGTCAA 57.847 39.130 20.43 0.00 30.14 3.18
2501 3052 5.738909 AGTATTAGCAGCTGAGTTGTCAAT 58.261 37.500 20.43 7.37 30.14 2.57
2502 3053 6.176183 AGTATTAGCAGCTGAGTTGTCAATT 58.824 36.000 20.43 0.00 30.14 2.32
2503 3054 5.557891 ATTAGCAGCTGAGTTGTCAATTC 57.442 39.130 20.43 1.25 30.14 2.17
2504 3055 2.854963 AGCAGCTGAGTTGTCAATTCA 58.145 42.857 20.43 10.07 30.14 2.57
2505 3056 3.216800 AGCAGCTGAGTTGTCAATTCAA 58.783 40.909 20.43 0.00 30.14 2.69
2506 3057 3.004106 AGCAGCTGAGTTGTCAATTCAAC 59.996 43.478 20.43 7.62 45.33 3.18
2507 3058 3.854784 GCAGCTGAGTTGTCAATTCAACC 60.855 47.826 20.43 6.34 45.90 3.77
2508 3059 3.316029 CAGCTGAGTTGTCAATTCAACCA 59.684 43.478 8.42 4.56 45.90 3.67
2509 3060 3.316308 AGCTGAGTTGTCAATTCAACCAC 59.684 43.478 11.44 3.11 45.90 4.16
2510 3061 3.066621 GCTGAGTTGTCAATTCAACCACA 59.933 43.478 11.44 6.79 45.90 4.17
2511 3062 4.601019 CTGAGTTGTCAATTCAACCACAC 58.399 43.478 11.44 0.00 45.90 3.82
2512 3063 3.380004 TGAGTTGTCAATTCAACCACACC 59.620 43.478 8.22 0.00 45.90 4.16
2513 3064 3.631250 AGTTGTCAATTCAACCACACCT 58.369 40.909 6.44 0.00 45.90 4.00
2514 3065 3.381272 AGTTGTCAATTCAACCACACCTG 59.619 43.478 6.44 0.00 45.90 4.00
2515 3066 2.305928 TGTCAATTCAACCACACCTGG 58.694 47.619 0.00 0.00 44.26 4.45
2516 3067 2.092158 TGTCAATTCAACCACACCTGGA 60.092 45.455 0.00 0.00 40.55 3.86
2517 3068 3.157087 GTCAATTCAACCACACCTGGAT 58.843 45.455 0.00 0.00 40.55 3.41
2518 3069 4.202514 TGTCAATTCAACCACACCTGGATA 60.203 41.667 0.00 0.00 40.55 2.59
2519 3070 4.764823 GTCAATTCAACCACACCTGGATAA 59.235 41.667 0.00 0.00 40.55 1.75
2520 3071 4.764823 TCAATTCAACCACACCTGGATAAC 59.235 41.667 0.00 0.00 40.55 1.89
2521 3072 4.657814 ATTCAACCACACCTGGATAACT 57.342 40.909 0.00 0.00 40.55 2.24
2522 3073 4.447138 TTCAACCACACCTGGATAACTT 57.553 40.909 0.00 0.00 40.55 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.925724 AGTCCTGATGTCTCCTACTCG 58.074 52.381 0.00 0.00 0.00 4.18
77 78 0.394762 ATGCACAGGATCATTGCGGT 60.395 50.000 0.00 0.00 39.22 5.68
93 94 5.447818 GCCAACTTAGTTGTCATACTGATGC 60.448 44.000 21.63 11.06 41.41 3.91
101 102 4.870426 CGATAGTGCCAACTTAGTTGTCAT 59.130 41.667 21.63 9.49 41.41 3.06
141 142 6.655003 TGACTCAGAGGGTGTTATTGATTTTC 59.345 38.462 1.53 0.00 0.00 2.29
148 149 4.160329 TGAGTGACTCAGAGGGTGTTATT 58.840 43.478 11.93 0.00 35.39 1.40
213 214 1.567649 TGAGAGGTATAGGTGACGGGT 59.432 52.381 0.00 0.00 0.00 5.28
214 215 1.955080 GTGAGAGGTATAGGTGACGGG 59.045 57.143 0.00 0.00 0.00 5.28
260 261 1.845809 CTGTCACACGAGCTTTGCCC 61.846 60.000 0.00 0.00 0.00 5.36
348 349 6.599638 GCTGTAGAACAAATCCTTACCAAGAT 59.400 38.462 0.00 0.00 0.00 2.40
356 357 5.003804 ACATTCGCTGTAGAACAAATCCTT 58.996 37.500 0.00 0.00 35.91 3.36
358 359 4.946784 ACATTCGCTGTAGAACAAATCC 57.053 40.909 0.00 0.00 35.91 3.01
359 360 6.961554 CCTAAACATTCGCTGTAGAACAAATC 59.038 38.462 0.00 0.00 36.98 2.17
360 361 6.622896 GCCTAAACATTCGCTGTAGAACAAAT 60.623 38.462 0.00 0.00 36.98 2.32
361 362 5.334569 GCCTAAACATTCGCTGTAGAACAAA 60.335 40.000 0.00 0.00 36.98 2.83
362 363 4.153475 GCCTAAACATTCGCTGTAGAACAA 59.847 41.667 0.00 0.00 36.98 2.83
363 364 3.682858 GCCTAAACATTCGCTGTAGAACA 59.317 43.478 0.00 0.00 36.98 3.18
364 365 3.682858 TGCCTAAACATTCGCTGTAGAAC 59.317 43.478 0.00 0.00 36.98 3.01
365 366 3.682858 GTGCCTAAACATTCGCTGTAGAA 59.317 43.478 0.00 0.00 36.98 2.10
366 367 3.259064 GTGCCTAAACATTCGCTGTAGA 58.741 45.455 0.00 0.00 36.98 2.59
367 368 3.000041 TGTGCCTAAACATTCGCTGTAG 59.000 45.455 0.00 0.00 36.98 2.74
368 369 3.000041 CTGTGCCTAAACATTCGCTGTA 59.000 45.455 0.00 0.00 36.98 2.74
369 370 1.806542 CTGTGCCTAAACATTCGCTGT 59.193 47.619 0.00 0.00 40.84 4.40
370 371 2.076100 TCTGTGCCTAAACATTCGCTG 58.924 47.619 0.00 0.00 0.00 5.18
371 372 2.350522 CTCTGTGCCTAAACATTCGCT 58.649 47.619 0.00 0.00 0.00 4.93
372 373 1.202076 GCTCTGTGCCTAAACATTCGC 60.202 52.381 0.00 0.00 35.15 4.70
373 374 2.094894 CAGCTCTGTGCCTAAACATTCG 59.905 50.000 0.00 0.00 44.23 3.34
374 375 3.077359 ACAGCTCTGTGCCTAAACATTC 58.923 45.455 1.15 0.00 43.11 2.67
375 376 3.077359 GACAGCTCTGTGCCTAAACATT 58.923 45.455 7.33 0.00 45.05 2.71
376 377 2.616510 GGACAGCTCTGTGCCTAAACAT 60.617 50.000 7.33 0.00 44.67 2.71
377 378 1.270839 GGACAGCTCTGTGCCTAAACA 60.271 52.381 7.33 0.00 44.67 2.83
378 379 1.443802 GGACAGCTCTGTGCCTAAAC 58.556 55.000 7.33 0.00 44.67 2.01
379 380 3.935993 GGACAGCTCTGTGCCTAAA 57.064 52.632 7.33 0.00 44.67 1.85
385 386 2.822561 TCTAACTCTGGACAGCTCTGTG 59.177 50.000 7.33 0.00 45.05 3.66
387 388 3.088532 ACTCTAACTCTGGACAGCTCTG 58.911 50.000 0.00 0.00 0.00 3.35
388 389 3.088532 CACTCTAACTCTGGACAGCTCT 58.911 50.000 0.00 0.00 0.00 4.09
389 390 2.165437 CCACTCTAACTCTGGACAGCTC 59.835 54.545 0.00 0.00 0.00 4.09
390 391 2.175202 CCACTCTAACTCTGGACAGCT 58.825 52.381 0.00 0.00 0.00 4.24
391 392 1.404851 GCCACTCTAACTCTGGACAGC 60.405 57.143 0.00 0.00 0.00 4.40
392 393 1.895798 TGCCACTCTAACTCTGGACAG 59.104 52.381 0.00 0.00 0.00 3.51
393 394 2.009681 TGCCACTCTAACTCTGGACA 57.990 50.000 0.00 0.00 0.00 4.02
394 395 2.763448 AGATGCCACTCTAACTCTGGAC 59.237 50.000 0.00 0.00 0.00 4.02
395 396 2.762887 CAGATGCCACTCTAACTCTGGA 59.237 50.000 0.00 0.00 0.00 3.86
396 397 2.762887 TCAGATGCCACTCTAACTCTGG 59.237 50.000 0.00 0.00 32.83 3.86
397 398 4.431809 CTTCAGATGCCACTCTAACTCTG 58.568 47.826 0.00 0.00 33.16 3.35
398 399 3.450457 CCTTCAGATGCCACTCTAACTCT 59.550 47.826 0.00 0.00 0.00 3.24
399 400 3.791245 CCTTCAGATGCCACTCTAACTC 58.209 50.000 0.00 0.00 0.00 3.01
400 401 2.093235 GCCTTCAGATGCCACTCTAACT 60.093 50.000 0.00 0.00 0.00 2.24
401 402 2.284190 GCCTTCAGATGCCACTCTAAC 58.716 52.381 0.00 0.00 0.00 2.34
402 403 1.908619 TGCCTTCAGATGCCACTCTAA 59.091 47.619 0.00 0.00 0.00 2.10
403 404 1.483827 CTGCCTTCAGATGCCACTCTA 59.516 52.381 0.00 0.00 42.95 2.43
404 405 0.252479 CTGCCTTCAGATGCCACTCT 59.748 55.000 0.00 0.00 42.95 3.24
405 406 0.747283 CCTGCCTTCAGATGCCACTC 60.747 60.000 0.00 0.00 42.95 3.51
406 407 1.302285 CCTGCCTTCAGATGCCACT 59.698 57.895 0.00 0.00 42.95 4.00
407 408 1.001641 ACCTGCCTTCAGATGCCAC 60.002 57.895 0.00 0.00 42.95 5.01
408 409 1.001764 CACCTGCCTTCAGATGCCA 60.002 57.895 0.00 0.00 42.95 4.92
409 410 1.751927 CCACCTGCCTTCAGATGCC 60.752 63.158 0.00 0.00 42.95 4.40
410 411 1.001641 ACCACCTGCCTTCAGATGC 60.002 57.895 0.00 0.00 42.95 3.91
411 412 0.679002 CCACCACCTGCCTTCAGATG 60.679 60.000 0.00 0.00 42.95 2.90
412 413 1.136329 ACCACCACCTGCCTTCAGAT 61.136 55.000 0.00 0.00 42.95 2.90
413 414 1.352622 AACCACCACCTGCCTTCAGA 61.353 55.000 0.00 0.00 42.95 3.27
414 415 0.468029 AAACCACCACCTGCCTTCAG 60.468 55.000 0.00 0.00 40.02 3.02
415 416 0.032615 AAAACCACCACCTGCCTTCA 60.033 50.000 0.00 0.00 0.00 3.02
416 417 0.389025 CAAAACCACCACCTGCCTTC 59.611 55.000 0.00 0.00 0.00 3.46
417 418 1.048160 CCAAAACCACCACCTGCCTT 61.048 55.000 0.00 0.00 0.00 4.35
418 419 1.457455 CCAAAACCACCACCTGCCT 60.457 57.895 0.00 0.00 0.00 4.75
419 420 2.506957 CCCAAAACCACCACCTGCC 61.507 63.158 0.00 0.00 0.00 4.85
420 421 2.506957 CCCCAAAACCACCACCTGC 61.507 63.158 0.00 0.00 0.00 4.85
421 422 2.506957 GCCCCAAAACCACCACCTG 61.507 63.158 0.00 0.00 0.00 4.00
422 423 2.123033 GCCCCAAAACCACCACCT 60.123 61.111 0.00 0.00 0.00 4.00
423 424 3.238497 GGCCCCAAAACCACCACC 61.238 66.667 0.00 0.00 0.00 4.61
424 425 2.123033 AGGCCCCAAAACCACCAC 60.123 61.111 0.00 0.00 0.00 4.16
425 426 2.200092 GAGGCCCCAAAACCACCA 59.800 61.111 0.00 0.00 0.00 4.17
426 427 1.458588 TTGAGGCCCCAAAACCACC 60.459 57.895 0.00 0.00 0.00 4.61
427 428 1.471829 CCTTGAGGCCCCAAAACCAC 61.472 60.000 0.00 0.00 0.00 4.16
428 429 1.152355 CCTTGAGGCCCCAAAACCA 60.152 57.895 0.00 0.00 0.00 3.67
429 430 3.791640 CCTTGAGGCCCCAAAACC 58.208 61.111 0.00 0.00 0.00 3.27
451 452 2.257286 CTTTGATTCGTGCGGGCCTG 62.257 60.000 7.41 7.41 0.00 4.85
452 453 2.033448 TTTGATTCGTGCGGGCCT 59.967 55.556 0.84 0.00 0.00 5.19
453 454 1.582610 TTCTTTGATTCGTGCGGGCC 61.583 55.000 0.00 0.00 0.00 5.80
454 455 0.451783 ATTCTTTGATTCGTGCGGGC 59.548 50.000 0.00 0.00 0.00 6.13
455 456 2.009774 AGATTCTTTGATTCGTGCGGG 58.990 47.619 0.00 0.00 0.00 6.13
456 457 4.766007 CATAGATTCTTTGATTCGTGCGG 58.234 43.478 0.00 0.00 0.00 5.69
457 458 4.206843 GCATAGATTCTTTGATTCGTGCG 58.793 43.478 8.14 0.00 0.00 5.34
458 459 4.206843 CGCATAGATTCTTTGATTCGTGC 58.793 43.478 8.14 0.00 31.77 5.34
459 460 5.395325 ACGCATAGATTCTTTGATTCGTG 57.605 39.130 8.14 0.00 0.00 4.35
460 461 4.207224 CGACGCATAGATTCTTTGATTCGT 59.793 41.667 8.14 7.81 0.00 3.85
461 462 4.207224 ACGACGCATAGATTCTTTGATTCG 59.793 41.667 17.88 17.88 30.86 3.34
462 463 5.643339 ACGACGCATAGATTCTTTGATTC 57.357 39.130 8.14 2.89 0.00 2.52
463 464 5.351465 ACAACGACGCATAGATTCTTTGATT 59.649 36.000 8.14 0.00 0.00 2.57
464 465 4.870426 ACAACGACGCATAGATTCTTTGAT 59.130 37.500 8.14 0.00 0.00 2.57
465 466 4.242475 ACAACGACGCATAGATTCTTTGA 58.758 39.130 8.14 0.00 0.00 2.69
466 467 4.584029 ACAACGACGCATAGATTCTTTG 57.416 40.909 0.00 0.00 0.00 2.77
467 468 4.565564 GGTACAACGACGCATAGATTCTTT 59.434 41.667 0.00 0.00 0.00 2.52
468 469 4.110482 GGTACAACGACGCATAGATTCTT 58.890 43.478 0.00 0.00 0.00 2.52
469 470 3.380637 AGGTACAACGACGCATAGATTCT 59.619 43.478 0.00 0.00 0.00 2.40
470 471 3.703420 AGGTACAACGACGCATAGATTC 58.297 45.455 0.00 0.00 0.00 2.52
471 472 3.795623 AGGTACAACGACGCATAGATT 57.204 42.857 0.00 0.00 0.00 2.40
472 473 3.129813 TCAAGGTACAACGACGCATAGAT 59.870 43.478 0.00 0.00 0.00 1.98
473 474 2.488937 TCAAGGTACAACGACGCATAGA 59.511 45.455 0.00 0.00 0.00 1.98
474 475 2.871133 TCAAGGTACAACGACGCATAG 58.129 47.619 0.00 0.00 0.00 2.23
475 476 3.513680 ATCAAGGTACAACGACGCATA 57.486 42.857 0.00 0.00 0.00 3.14
476 477 2.380084 ATCAAGGTACAACGACGCAT 57.620 45.000 0.00 0.00 0.00 4.73
477 478 2.030096 TGTATCAAGGTACAACGACGCA 60.030 45.455 0.00 0.00 31.96 5.24
478 479 2.343544 GTGTATCAAGGTACAACGACGC 59.656 50.000 0.00 0.00 36.42 5.19
479 480 3.829948 AGTGTATCAAGGTACAACGACG 58.170 45.455 0.00 0.00 36.42 5.12
480 481 5.570589 GTGTAGTGTATCAAGGTACAACGAC 59.429 44.000 0.00 0.00 36.42 4.34
481 482 5.335897 GGTGTAGTGTATCAAGGTACAACGA 60.336 44.000 0.00 0.00 36.42 3.85
482 483 4.860907 GGTGTAGTGTATCAAGGTACAACG 59.139 45.833 0.00 0.00 36.42 4.10
483 484 4.860907 CGGTGTAGTGTATCAAGGTACAAC 59.139 45.833 0.00 0.00 36.42 3.32
484 485 4.766373 TCGGTGTAGTGTATCAAGGTACAA 59.234 41.667 0.00 0.00 36.42 2.41
485 486 4.334552 TCGGTGTAGTGTATCAAGGTACA 58.665 43.478 0.00 0.00 32.43 2.90
486 487 4.201990 CCTCGGTGTAGTGTATCAAGGTAC 60.202 50.000 0.00 0.00 0.00 3.34
487 488 3.949754 CCTCGGTGTAGTGTATCAAGGTA 59.050 47.826 0.00 0.00 0.00 3.08
488 489 2.758979 CCTCGGTGTAGTGTATCAAGGT 59.241 50.000 0.00 0.00 0.00 3.50
489 490 2.758979 ACCTCGGTGTAGTGTATCAAGG 59.241 50.000 0.00 0.00 0.00 3.61
490 491 3.442625 TGACCTCGGTGTAGTGTATCAAG 59.557 47.826 0.00 0.00 0.00 3.02
491 492 3.423749 TGACCTCGGTGTAGTGTATCAA 58.576 45.455 0.00 0.00 0.00 2.57
492 493 3.076079 TGACCTCGGTGTAGTGTATCA 57.924 47.619 0.00 0.00 0.00 2.15
493 494 3.734293 GCTTGACCTCGGTGTAGTGTATC 60.734 52.174 0.00 0.00 0.00 2.24
494 495 2.165845 GCTTGACCTCGGTGTAGTGTAT 59.834 50.000 0.00 0.00 0.00 2.29
495 496 1.542915 GCTTGACCTCGGTGTAGTGTA 59.457 52.381 0.00 0.00 0.00 2.90
496 497 0.317479 GCTTGACCTCGGTGTAGTGT 59.683 55.000 0.00 0.00 0.00 3.55
497 498 0.317160 TGCTTGACCTCGGTGTAGTG 59.683 55.000 0.00 0.00 0.00 2.74
498 499 1.204941 GATGCTTGACCTCGGTGTAGT 59.795 52.381 0.00 0.00 0.00 2.73
499 500 1.471676 GGATGCTTGACCTCGGTGTAG 60.472 57.143 0.00 0.00 0.00 2.74
500 501 0.535335 GGATGCTTGACCTCGGTGTA 59.465 55.000 0.00 0.00 0.00 2.90
501 502 1.194781 AGGATGCTTGACCTCGGTGT 61.195 55.000 0.00 0.00 0.00 4.16
502 503 0.824109 TAGGATGCTTGACCTCGGTG 59.176 55.000 0.00 0.00 37.68 4.94
503 504 1.115467 CTAGGATGCTTGACCTCGGT 58.885 55.000 0.00 0.00 37.68 4.69
504 505 0.390860 CCTAGGATGCTTGACCTCGG 59.609 60.000 1.05 0.00 37.68 4.63
505 506 1.115467 ACCTAGGATGCTTGACCTCG 58.885 55.000 17.98 0.00 37.68 4.63
506 507 1.834263 ACACCTAGGATGCTTGACCTC 59.166 52.381 17.98 0.00 37.68 3.85
507 508 1.958288 ACACCTAGGATGCTTGACCT 58.042 50.000 17.98 0.00 39.95 3.85
508 509 2.789409 AACACCTAGGATGCTTGACC 57.211 50.000 17.98 0.00 0.00 4.02
509 510 4.327680 AGAAAACACCTAGGATGCTTGAC 58.672 43.478 17.98 6.37 0.00 3.18
510 511 4.041567 TGAGAAAACACCTAGGATGCTTGA 59.958 41.667 17.98 0.00 0.00 3.02
511 512 4.326826 TGAGAAAACACCTAGGATGCTTG 58.673 43.478 17.98 5.14 0.00 4.01
512 513 4.640771 TGAGAAAACACCTAGGATGCTT 57.359 40.909 17.98 5.03 0.00 3.91
513 514 4.521146 CATGAGAAAACACCTAGGATGCT 58.479 43.478 17.98 2.13 0.00 3.79
514 515 3.629398 CCATGAGAAAACACCTAGGATGC 59.371 47.826 17.98 0.00 0.00 3.91
515 516 4.202441 CCCATGAGAAAACACCTAGGATG 58.798 47.826 17.98 12.55 0.00 3.51
516 517 3.372025 GCCCATGAGAAAACACCTAGGAT 60.372 47.826 17.98 0.00 0.00 3.24
517 518 2.026262 GCCCATGAGAAAACACCTAGGA 60.026 50.000 17.98 0.00 0.00 2.94
518 519 2.025887 AGCCCATGAGAAAACACCTAGG 60.026 50.000 7.41 7.41 0.00 3.02
519 520 3.356529 AGCCCATGAGAAAACACCTAG 57.643 47.619 0.00 0.00 0.00 3.02
520 521 3.806949 AAGCCCATGAGAAAACACCTA 57.193 42.857 0.00 0.00 0.00 3.08
521 522 2.683211 AAGCCCATGAGAAAACACCT 57.317 45.000 0.00 0.00 0.00 4.00
574 575 2.353889 GTCAACTACGTCGCTCCTCATA 59.646 50.000 0.00 0.00 0.00 2.15
650 651 3.306641 GCATTTCATGGTTAAACAGGGCA 60.307 43.478 5.16 0.00 0.00 5.36
707 708 1.418637 GGATAACTAATGGGTCCCGCA 59.581 52.381 2.65 0.00 0.00 5.69
955 1035 3.594568 CGGCACTGGACCGTACTA 58.405 61.111 2.82 0.00 45.70 1.82
1010 1090 1.326245 TCACACAAGTCAAACGCTTCG 59.674 47.619 0.00 0.00 0.00 3.79
1288 1728 5.106830 CCCAAAATTGAAATTGAGCTCTTGC 60.107 40.000 16.19 0.57 40.05 4.01
1336 1878 3.674997 GGCTCTGTCTACCAAATGTGAA 58.325 45.455 0.00 0.00 0.00 3.18
1348 1890 0.466372 TCATCGGATCGGCTCTGTCT 60.466 55.000 0.00 0.00 0.00 3.41
1434 1976 3.409851 TCATATTTGCTTGCTGCTTCG 57.590 42.857 0.00 0.00 43.37 3.79
1516 2060 8.374327 ACTAAAACTGTAACAATTTCTAGCGT 57.626 30.769 0.00 0.00 0.00 5.07
1689 2234 7.851228 TCGCATCCTATTACCAGAATATCAAT 58.149 34.615 0.00 0.00 0.00 2.57
1690 2235 7.239763 TCGCATCCTATTACCAGAATATCAA 57.760 36.000 0.00 0.00 0.00 2.57
1756 2302 7.337942 AGAACAAAGAATGAACACTGGATATCC 59.662 37.037 15.39 15.39 0.00 2.59
1773 2319 8.330466 TGTTAACTGAAGAACAAGAACAAAGA 57.670 30.769 7.22 0.00 32.74 2.52
1886 2433 4.832608 CCTACGCGGGTGGGCTTC 62.833 72.222 21.73 0.00 38.03 3.86
1944 2492 7.662897 AGGTTTTGGTCGAAGCATTTATTTTA 58.337 30.769 0.00 0.00 0.00 1.52
1949 2499 4.138290 TGAGGTTTTGGTCGAAGCATTTA 58.862 39.130 0.00 0.00 0.00 1.40
1950 2500 2.955660 TGAGGTTTTGGTCGAAGCATTT 59.044 40.909 0.00 0.00 0.00 2.32
2046 2596 5.637387 GCCCAACATTTATTCGACACAAAAT 59.363 36.000 0.00 0.00 0.00 1.82
2095 2646 7.538678 GTGGACAAGCAACAAATATGTAAAGAG 59.461 37.037 0.00 0.00 39.40 2.85
2125 2676 8.891671 ACATGCATAAAAAGAATCACAAAACT 57.108 26.923 0.00 0.00 0.00 2.66
2279 2830 4.502950 GGTTTGAATTTCACATCTGGCCAA 60.503 41.667 7.01 0.00 0.00 4.52
2330 2881 5.546526 TGGATTAACTGAAATGCCCAAAAC 58.453 37.500 0.00 0.00 0.00 2.43
2366 2917 4.658071 CGGGTTATCAACATGCAACTAAC 58.342 43.478 0.00 0.00 0.00 2.34
2379 2930 2.635915 CCCCTATACTTGCGGGTTATCA 59.364 50.000 0.00 0.00 36.18 2.15
2380 2931 2.901839 TCCCCTATACTTGCGGGTTATC 59.098 50.000 0.00 0.00 36.84 1.75
2381 2932 2.980548 TCCCCTATACTTGCGGGTTAT 58.019 47.619 0.00 0.00 36.84 1.89
2382 2933 2.475339 TCCCCTATACTTGCGGGTTA 57.525 50.000 0.00 0.00 36.84 2.85
2383 2934 1.697982 GATCCCCTATACTTGCGGGTT 59.302 52.381 0.00 0.00 36.84 4.11
2384 2935 1.349067 GATCCCCTATACTTGCGGGT 58.651 55.000 0.00 0.00 36.84 5.28
2385 2936 0.246635 CGATCCCCTATACTTGCGGG 59.753 60.000 0.00 0.00 37.73 6.13
2386 2937 0.389948 GCGATCCCCTATACTTGCGG 60.390 60.000 0.00 0.00 0.00 5.69
2387 2938 0.317160 TGCGATCCCCTATACTTGCG 59.683 55.000 0.00 0.00 0.00 4.85
2388 2939 2.143925 GTTGCGATCCCCTATACTTGC 58.856 52.381 0.00 0.00 0.00 4.01
2389 2940 3.181465 ACTGTTGCGATCCCCTATACTTG 60.181 47.826 0.00 0.00 0.00 3.16
2390 2941 3.039011 ACTGTTGCGATCCCCTATACTT 58.961 45.455 0.00 0.00 0.00 2.24
2391 2942 2.679082 ACTGTTGCGATCCCCTATACT 58.321 47.619 0.00 0.00 0.00 2.12
2392 2943 3.470645 AACTGTTGCGATCCCCTATAC 57.529 47.619 0.00 0.00 0.00 1.47
2393 2944 4.448210 GAAAACTGTTGCGATCCCCTATA 58.552 43.478 0.00 0.00 0.00 1.31
2394 2945 3.279434 GAAAACTGTTGCGATCCCCTAT 58.721 45.455 0.00 0.00 0.00 2.57
2395 2946 2.706890 GAAAACTGTTGCGATCCCCTA 58.293 47.619 0.00 0.00 0.00 3.53
2396 2947 1.534729 GAAAACTGTTGCGATCCCCT 58.465 50.000 0.00 0.00 0.00 4.79
2397 2948 0.168128 CGAAAACTGTTGCGATCCCC 59.832 55.000 9.57 0.00 38.11 4.81
2398 2949 1.128692 CTCGAAAACTGTTGCGATCCC 59.871 52.381 15.79 0.00 43.94 3.85
2399 2950 1.128692 CCTCGAAAACTGTTGCGATCC 59.871 52.381 15.79 0.00 43.94 3.36
2400 2951 1.128692 CCCTCGAAAACTGTTGCGATC 59.871 52.381 15.79 3.49 43.94 3.69
2401 2952 1.156736 CCCTCGAAAACTGTTGCGAT 58.843 50.000 15.79 0.00 43.94 4.58
2402 2953 0.179067 ACCCTCGAAAACTGTTGCGA 60.179 50.000 14.99 14.99 42.74 5.10
2403 2954 1.459592 CTACCCTCGAAAACTGTTGCG 59.540 52.381 9.05 9.05 37.10 4.85
2404 2955 2.737252 CTCTACCCTCGAAAACTGTTGC 59.263 50.000 0.00 0.00 0.00 4.17
2405 2956 3.991367 ACTCTACCCTCGAAAACTGTTG 58.009 45.455 0.00 0.00 0.00 3.33
2406 2957 5.997384 ATACTCTACCCTCGAAAACTGTT 57.003 39.130 0.00 0.00 0.00 3.16
2407 2958 5.479375 TGAATACTCTACCCTCGAAAACTGT 59.521 40.000 0.00 0.00 0.00 3.55
2408 2959 5.962433 TGAATACTCTACCCTCGAAAACTG 58.038 41.667 0.00 0.00 0.00 3.16
2409 2960 6.396450 GTTGAATACTCTACCCTCGAAAACT 58.604 40.000 0.00 0.00 0.00 2.66
2410 2961 5.579904 GGTTGAATACTCTACCCTCGAAAAC 59.420 44.000 0.00 0.00 40.45 2.43
2411 2962 5.727434 GGTTGAATACTCTACCCTCGAAAA 58.273 41.667 0.00 0.00 40.45 2.29
2412 2963 5.334724 GGTTGAATACTCTACCCTCGAAA 57.665 43.478 0.00 0.00 40.45 3.46
2413 2964 4.996788 GGTTGAATACTCTACCCTCGAA 57.003 45.455 0.00 0.00 40.45 3.71
2424 2975 9.801873 CGAATCAATAAATTTGGGTTGAATACT 57.198 29.630 15.01 5.42 34.62 2.12
2425 2976 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
2426 2977 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
2427 2978 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
2428 2979 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
2429 2980 7.087639 GTGTCGAATCAATAAATTTGGGTTGA 58.912 34.615 14.00 14.00 35.33 3.18
2430 2981 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
2431 2982 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
2432 2983 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
2433 2984 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
2434 2985 6.531240 CCCTTGTGTCGAATCAATAAATTTGG 59.469 38.462 0.00 1.78 0.00 3.28
2435 2986 7.312154 TCCCTTGTGTCGAATCAATAAATTTG 58.688 34.615 0.00 0.00 0.00 2.32
2436 2987 7.461182 TCCCTTGTGTCGAATCAATAAATTT 57.539 32.000 0.00 0.00 0.00 1.82
2437 2988 6.404734 GCTCCCTTGTGTCGAATCAATAAATT 60.405 38.462 4.42 0.00 0.00 1.82
2438 2989 5.066505 GCTCCCTTGTGTCGAATCAATAAAT 59.933 40.000 4.42 0.00 0.00 1.40
2439 2990 4.394920 GCTCCCTTGTGTCGAATCAATAAA 59.605 41.667 4.42 0.00 0.00 1.40
2440 2991 3.938963 GCTCCCTTGTGTCGAATCAATAA 59.061 43.478 4.42 0.00 0.00 1.40
2441 2992 3.531538 GCTCCCTTGTGTCGAATCAATA 58.468 45.455 4.42 0.00 0.00 1.90
2442 2993 2.359900 GCTCCCTTGTGTCGAATCAAT 58.640 47.619 4.42 0.00 0.00 2.57
2443 2994 1.610624 GGCTCCCTTGTGTCGAATCAA 60.611 52.381 0.00 0.00 0.00 2.57
2444 2995 0.036388 GGCTCCCTTGTGTCGAATCA 60.036 55.000 0.00 0.00 0.00 2.57
2445 2996 0.036388 TGGCTCCCTTGTGTCGAATC 60.036 55.000 0.00 0.00 0.00 2.52
2446 2997 0.400213 TTGGCTCCCTTGTGTCGAAT 59.600 50.000 0.00 0.00 0.00 3.34
2447 2998 0.181587 TTTGGCTCCCTTGTGTCGAA 59.818 50.000 0.00 0.00 0.00 3.71
2448 2999 0.250295 CTTTGGCTCCCTTGTGTCGA 60.250 55.000 0.00 0.00 0.00 4.20
2449 3000 0.250295 TCTTTGGCTCCCTTGTGTCG 60.250 55.000 0.00 0.00 0.00 4.35
2450 3001 2.206576 ATCTTTGGCTCCCTTGTGTC 57.793 50.000 0.00 0.00 0.00 3.67
2451 3002 2.683211 AATCTTTGGCTCCCTTGTGT 57.317 45.000 0.00 0.00 0.00 3.72
2452 3003 4.952335 AGAATAATCTTTGGCTCCCTTGTG 59.048 41.667 0.00 0.00 29.15 3.33
2453 3004 5.196695 GAGAATAATCTTTGGCTCCCTTGT 58.803 41.667 0.00 0.00 35.54 3.16
2454 3005 5.195940 TGAGAATAATCTTTGGCTCCCTTG 58.804 41.667 0.00 0.00 35.54 3.61
2455 3006 5.456921 TGAGAATAATCTTTGGCTCCCTT 57.543 39.130 0.00 0.00 35.54 3.95
2456 3007 5.044550 ACTTGAGAATAATCTTTGGCTCCCT 60.045 40.000 0.00 0.00 35.54 4.20
2457 3008 5.196695 ACTTGAGAATAATCTTTGGCTCCC 58.803 41.667 0.00 0.00 35.54 4.30
2458 3009 8.457238 AATACTTGAGAATAATCTTTGGCTCC 57.543 34.615 0.00 0.00 35.54 4.70
2460 3011 9.061435 GCTAATACTTGAGAATAATCTTTGGCT 57.939 33.333 0.00 0.00 35.54 4.75
2461 3012 8.840321 TGCTAATACTTGAGAATAATCTTTGGC 58.160 33.333 0.00 0.00 35.54 4.52
2463 3014 9.875675 GCTGCTAATACTTGAGAATAATCTTTG 57.124 33.333 0.00 0.00 35.54 2.77
2464 3015 9.844257 AGCTGCTAATACTTGAGAATAATCTTT 57.156 29.630 0.00 0.00 35.54 2.52
2465 3016 9.270640 CAGCTGCTAATACTTGAGAATAATCTT 57.729 33.333 0.00 0.00 35.54 2.40
2466 3017 8.646004 TCAGCTGCTAATACTTGAGAATAATCT 58.354 33.333 9.47 0.00 39.10 2.40
2467 3018 8.824159 TCAGCTGCTAATACTTGAGAATAATC 57.176 34.615 9.47 0.00 0.00 1.75
2468 3019 8.428063 ACTCAGCTGCTAATACTTGAGAATAAT 58.572 33.333 9.47 0.00 0.00 1.28
2469 3020 7.786030 ACTCAGCTGCTAATACTTGAGAATAA 58.214 34.615 9.47 0.00 0.00 1.40
2470 3021 7.353414 ACTCAGCTGCTAATACTTGAGAATA 57.647 36.000 9.47 0.00 0.00 1.75
2471 3022 6.232581 ACTCAGCTGCTAATACTTGAGAAT 57.767 37.500 9.47 0.00 0.00 2.40
2472 3023 5.667539 ACTCAGCTGCTAATACTTGAGAA 57.332 39.130 9.47 0.00 0.00 2.87
2473 3024 5.047021 ACAACTCAGCTGCTAATACTTGAGA 60.047 40.000 9.47 1.04 0.00 3.27
2474 3025 5.174395 ACAACTCAGCTGCTAATACTTGAG 58.826 41.667 9.47 6.55 0.00 3.02
2475 3026 5.152623 ACAACTCAGCTGCTAATACTTGA 57.847 39.130 9.47 0.00 0.00 3.02
2476 3027 4.931601 TGACAACTCAGCTGCTAATACTTG 59.068 41.667 9.47 4.80 0.00 3.16
2477 3028 5.152623 TGACAACTCAGCTGCTAATACTT 57.847 39.130 9.47 0.00 0.00 2.24
2478 3029 4.808414 TGACAACTCAGCTGCTAATACT 57.192 40.909 9.47 0.00 0.00 2.12
2479 3030 6.092670 TGAATTGACAACTCAGCTGCTAATAC 59.907 38.462 9.47 0.00 0.00 1.89
2480 3031 6.172630 TGAATTGACAACTCAGCTGCTAATA 58.827 36.000 9.47 0.00 0.00 0.98
2481 3032 5.005740 TGAATTGACAACTCAGCTGCTAAT 58.994 37.500 9.47 0.00 0.00 1.73
2482 3033 4.388485 TGAATTGACAACTCAGCTGCTAA 58.612 39.130 9.47 0.00 0.00 3.09
2483 3034 4.006780 TGAATTGACAACTCAGCTGCTA 57.993 40.909 9.47 0.00 0.00 3.49
2484 3035 2.854963 TGAATTGACAACTCAGCTGCT 58.145 42.857 9.47 0.00 0.00 4.24
2485 3036 3.303406 GTTGAATTGACAACTCAGCTGC 58.697 45.455 9.47 0.00 44.34 5.25
2486 3037 3.316029 TGGTTGAATTGACAACTCAGCTG 59.684 43.478 7.63 7.63 46.17 4.24
2487 3038 3.316308 GTGGTTGAATTGACAACTCAGCT 59.684 43.478 12.25 0.00 46.17 4.24
2488 3039 3.066621 TGTGGTTGAATTGACAACTCAGC 59.933 43.478 5.07 5.07 46.17 4.26
2489 3040 4.498009 GGTGTGGTTGAATTGACAACTCAG 60.498 45.833 0.00 0.00 46.17 3.35
2490 3041 3.380004 GGTGTGGTTGAATTGACAACTCA 59.620 43.478 9.21 0.00 46.17 3.41
2491 3042 3.632145 AGGTGTGGTTGAATTGACAACTC 59.368 43.478 9.21 0.00 46.17 3.01
2492 3043 3.381272 CAGGTGTGGTTGAATTGACAACT 59.619 43.478 9.21 0.00 46.17 3.16
2493 3044 3.490761 CCAGGTGTGGTTGAATTGACAAC 60.491 47.826 0.00 0.00 46.20 3.32
2494 3045 2.692557 CCAGGTGTGGTTGAATTGACAA 59.307 45.455 0.00 0.00 39.30 3.18
2495 3046 2.092158 TCCAGGTGTGGTTGAATTGACA 60.092 45.455 0.00 0.00 45.28 3.58
2496 3047 2.582052 TCCAGGTGTGGTTGAATTGAC 58.418 47.619 0.00 0.00 45.28 3.18
2497 3048 3.524095 ATCCAGGTGTGGTTGAATTGA 57.476 42.857 0.00 0.00 45.28 2.57
2498 3049 4.766891 AGTTATCCAGGTGTGGTTGAATTG 59.233 41.667 0.00 0.00 45.28 2.32
2499 3050 4.998051 AGTTATCCAGGTGTGGTTGAATT 58.002 39.130 0.00 0.00 45.28 2.17
2500 3051 4.657814 AGTTATCCAGGTGTGGTTGAAT 57.342 40.909 0.00 0.00 45.28 2.57
2501 3052 4.447138 AAGTTATCCAGGTGTGGTTGAA 57.553 40.909 0.00 0.00 45.28 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.