Multiple sequence alignment - TraesCS7D01G112900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G112900 chr7D 100.000 3723 0 0 1 3723 69054463 69058185 0.000000e+00 6876.0
1 TraesCS7D01G112900 chr7D 80.334 1017 124 36 1000 1971 66508450 66507465 0.000000e+00 701.0
2 TraesCS7D01G112900 chr7D 80.215 1021 124 38 994 1968 68928631 68929619 0.000000e+00 695.0
3 TraesCS7D01G112900 chr7D 89.400 500 47 6 99 596 612298028 612297533 3.160000e-175 625.0
4 TraesCS7D01G112900 chr7D 76.398 1216 179 59 821 1961 68983408 68984590 1.170000e-154 556.0
5 TraesCS7D01G112900 chr7D 78.089 785 137 15 781 1542 85345078 85345850 7.280000e-127 464.0
6 TraesCS7D01G112900 chr7D 75.743 1010 159 53 965 1947 66517136 66516186 2.660000e-116 429.0
7 TraesCS7D01G112900 chr7D 83.077 325 48 6 273 595 21838829 21838510 4.700000e-74 289.0
8 TraesCS7D01G112900 chr7D 82.919 322 49 2 1624 1942 66415746 66415428 6.090000e-73 285.0
9 TraesCS7D01G112900 chr7D 75.134 744 114 40 842 1548 66548198 66547489 2.190000e-72 283.0
10 TraesCS7D01G112900 chr7D 76.033 605 110 23 808 1405 73178054 73178630 7.870000e-72 281.0
11 TraesCS7D01G112900 chr7D 74.059 717 135 30 841 1533 82449396 82448707 2.870000e-61 246.0
12 TraesCS7D01G112900 chr7D 81.949 277 32 7 861 1124 85281475 85281746 6.260000e-53 219.0
13 TraesCS7D01G112900 chr7D 74.606 571 98 27 1000 1548 548818607 548818062 1.360000e-49 207.0
14 TraesCS7D01G112900 chr7D 91.045 134 11 1 2653 2785 66413258 66413125 2.950000e-41 180.0
15 TraesCS7D01G112900 chr7D 88.312 154 10 6 819 966 66376104 66375953 1.060000e-40 178.0
16 TraesCS7D01G112900 chr7D 80.088 226 39 3 1317 1542 85281832 85282051 2.980000e-36 163.0
17 TraesCS7D01G112900 chr7D 91.525 118 9 1 2650 2766 68984953 68985070 1.070000e-35 161.0
18 TraesCS7D01G112900 chr7D 92.754 69 4 1 2279 2346 69056577 69056645 8.510000e-17 99.0
19 TraesCS7D01G112900 chr7D 92.754 69 4 1 2115 2183 69056741 69056808 8.510000e-17 99.0
20 TraesCS7D01G112900 chr7D 97.059 34 1 0 2005 2038 66545547 66545514 1.440000e-04 58.4
21 TraesCS7D01G112900 chr7D 97.059 34 1 0 2005 2038 68910796 68910829 1.440000e-04 58.4
22 TraesCS7D01G112900 chr7D 100.000 31 0 0 2617 2647 69057036 69057066 1.440000e-04 58.4
23 TraesCS7D01G112900 chr7D 100.000 31 0 0 2574 2604 69057079 69057109 1.440000e-04 58.4
24 TraesCS7D01G112900 chr7A 91.775 1228 59 18 2134 3338 74884833 74886041 0.000000e+00 1670.0
25 TraesCS7D01G112900 chr7A 96.733 857 24 3 696 1548 74883203 74884059 0.000000e+00 1424.0
26 TraesCS7D01G112900 chr7A 90.824 534 22 6 1625 2131 74884183 74884716 0.000000e+00 689.0
27 TraesCS7D01G112900 chr7A 78.463 794 141 18 773 1542 86466335 86467122 3.340000e-135 492.0
28 TraesCS7D01G112900 chr7A 82.663 323 48 4 1624 1942 70889152 70888834 2.830000e-71 279.0
29 TraesCS7D01G112900 chr7A 75.699 572 105 19 994 1548 74856915 74857469 4.770000e-64 255.0
30 TraesCS7D01G112900 chr7A 73.894 678 118 37 807 1442 634363388 634362728 2.250000e-52 217.0
31 TraesCS7D01G112900 chr7A 89.535 172 13 4 3346 3514 74886255 74886424 2.910000e-51 213.0
32 TraesCS7D01G112900 chr7A 87.097 186 18 5 2605 2789 70888379 70888199 4.870000e-49 206.0
33 TraesCS7D01G112900 chr7A 85.165 182 21 5 2605 2785 74644087 74644263 8.210000e-42 182.0
34 TraesCS7D01G112900 chr7A 94.444 108 6 0 2678 2785 71112899 71112792 2.300000e-37 167.0
35 TraesCS7D01G112900 chr7A 94.000 100 2 1 1 100 74883029 74883124 8.330000e-32 148.0
36 TraesCS7D01G112900 chr7A 85.827 127 13 3 3027 3148 70896424 70896298 3.020000e-26 130.0
37 TraesCS7D01G112900 chr7A 84.677 124 19 0 439 562 7207513 7207390 1.400000e-24 124.0
38 TraesCS7D01G112900 chr7A 86.486 111 5 6 819 923 74668861 74668967 3.040000e-21 113.0
39 TraesCS7D01G112900 chr7A 95.652 69 2 1 2115 2183 74884971 74885038 3.930000e-20 110.0
40 TraesCS7D01G112900 chr7A 81.955 133 16 5 2356 2487 74643940 74644065 5.090000e-19 106.0
41 TraesCS7D01G112900 chr7A 93.548 62 2 2 655 716 74883137 74883196 1.420000e-14 91.6
42 TraesCS7D01G112900 chr7A 100.000 31 0 0 2574 2604 74885318 74885348 1.440000e-04 58.4
43 TraesCS7D01G112900 chr7A 100.000 30 0 0 2617 2646 74885275 74885304 5.190000e-04 56.5
44 TraesCS7D01G112900 chr7A 94.286 35 2 0 99 133 5433861 5433895 2.000000e-03 54.7
45 TraesCS7D01G112900 chr7B 93.552 853 31 14 708 1548 10946298 10947138 0.000000e+00 1249.0
46 TraesCS7D01G112900 chr7B 89.123 855 39 21 2206 3019 10947629 10948470 0.000000e+00 1014.0
47 TraesCS7D01G112900 chr7B 91.183 465 27 11 1624 2077 10947256 10947717 1.470000e-173 619.0
48 TraesCS7D01G112900 chr7B 79.059 659 108 13 841 1486 7560830 7560189 3.440000e-115 425.0
49 TraesCS7D01G112900 chr7B 77.125 800 125 28 774 1548 10639199 10639965 9.620000e-111 411.0
50 TraesCS7D01G112900 chr7B 85.115 262 39 0 1681 1942 10559838 10560099 6.130000e-68 268.0
51 TraesCS7D01G112900 chr7B 81.846 325 50 4 1624 1942 7716854 7716533 7.930000e-67 265.0
52 TraesCS7D01G112900 chr7B 76.423 492 84 16 795 1268 29830160 29829683 1.730000e-58 237.0
53 TraesCS7D01G112900 chr7B 77.397 438 72 14 841 1265 30766275 30765852 6.220000e-58 235.0
54 TraesCS7D01G112900 chr7B 87.440 207 20 5 3511 3714 725369796 725369999 2.240000e-57 233.0
55 TraesCS7D01G112900 chr7B 85.484 186 21 5 2605 2789 10560596 10560776 4.910000e-44 189.0
56 TraesCS7D01G112900 chr7B 95.536 112 5 0 2678 2789 7730560 7730449 2.950000e-41 180.0
57 TraesCS7D01G112900 chr7B 90.909 132 12 0 465 596 614644705 614644836 1.060000e-40 178.0
58 TraesCS7D01G112900 chr7B 80.571 175 19 10 1380 1548 10061394 10061559 1.820000e-23 121.0
59 TraesCS7D01G112900 chr7B 100.000 32 0 0 2615 2646 10948017 10948048 4.020000e-05 60.2
60 TraesCS7D01G112900 chr7B 97.059 34 1 0 2005 2038 10070868 10070901 1.440000e-04 58.4
61 TraesCS7D01G112900 chr7B 96.970 33 0 1 99 131 674036345 674036314 2.000000e-03 54.7
62 TraesCS7D01G112900 chr6D 89.648 483 44 6 117 596 3747312 3746833 8.840000e-171 610.0
63 TraesCS7D01G112900 chr6D 93.434 198 11 2 402 598 54560279 54560475 3.640000e-75 292.0
64 TraesCS7D01G112900 chr6D 85.427 199 15 8 3517 3712 56560491 56560304 1.060000e-45 195.0
65 TraesCS7D01G112900 chr6D 87.413 143 14 3 120 259 54560142 54560283 1.070000e-35 161.0
66 TraesCS7D01G112900 chr6D 94.286 35 2 0 99 133 3747375 3747341 2.000000e-03 54.7
67 TraesCS7D01G112900 chr6D 100.000 29 0 0 99 127 54560075 54560103 2.000000e-03 54.7
68 TraesCS7D01G112900 chr2B 79.534 772 99 28 823 1541 135794747 135795512 2.580000e-136 496.0
69 TraesCS7D01G112900 chr2B 78.657 581 82 27 839 1405 55210338 55209786 7.650000e-92 348.0
70 TraesCS7D01G112900 chr2B 78.328 586 92 26 839 1409 55855926 55855361 2.750000e-91 346.0
71 TraesCS7D01G112900 chr2B 75.516 727 129 31 858 1548 76517518 76516805 1.000000e-80 311.0
72 TraesCS7D01G112900 chr2B 82.997 347 49 6 1624 1968 135795665 135796003 4.670000e-79 305.0
73 TraesCS7D01G112900 chr2B 85.000 200 24 3 3512 3706 743316060 743315862 8.160000e-47 198.0
74 TraesCS7D01G112900 chr2B 81.690 142 6 7 823 945 135792496 135792636 2.370000e-17 100.0
75 TraesCS7D01G112900 chr6B 90.196 306 25 4 293 598 683649205 683649505 9.690000e-106 394.0
76 TraesCS7D01G112900 chr6B 87.550 249 27 4 120 366 683648940 683649186 6.090000e-73 285.0
77 TraesCS7D01G112900 chr6B 78.930 299 37 16 300 597 2282925 2283198 2.950000e-41 180.0
78 TraesCS7D01G112900 chr6B 82.938 211 25 8 3517 3723 687329283 687329080 2.950000e-41 180.0
79 TraesCS7D01G112900 chr6B 90.517 116 6 2 2076 2187 30980133 30980247 8.330000e-32 148.0
80 TraesCS7D01G112900 chr2D 77.537 601 98 27 822 1409 33242168 33241592 9.970000e-86 327.0
81 TraesCS7D01G112900 chr2D 86.574 216 20 7 3512 3723 29854112 29853902 2.890000e-56 230.0
82 TraesCS7D01G112900 chr2D 84.343 198 23 6 3512 3703 47674240 47674045 1.770000e-43 187.0
83 TraesCS7D01G112900 chr2A 83.862 347 46 6 1624 1968 84749815 84750153 4.640000e-84 322.0
84 TraesCS7D01G112900 chr2A 77.375 579 100 18 839 1406 36411858 36411300 7.760000e-82 315.0
85 TraesCS7D01G112900 chr5B 84.570 337 26 9 2076 2395 616512594 616512921 1.000000e-80 311.0
86 TraesCS7D01G112900 chr5B 84.000 250 20 6 2076 2321 14270825 14271058 4.840000e-54 222.0
87 TraesCS7D01G112900 chr5B 95.455 44 1 1 2115 2158 14271016 14271058 6.670000e-08 69.4
88 TraesCS7D01G112900 chr5B 95.122 41 2 0 2394 2434 616513004 616513044 8.630000e-07 65.8
89 TraesCS7D01G112900 chr5D 86.538 208 20 7 3513 3714 217331740 217331945 4.840000e-54 222.0
90 TraesCS7D01G112900 chr5D 92.308 52 4 0 3509 3560 217331653 217331704 1.430000e-09 75.0
91 TraesCS7D01G112900 chr1B 84.000 250 20 7 2076 2321 567661489 567661722 4.840000e-54 222.0
92 TraesCS7D01G112900 chr1B 78.325 203 33 10 404 601 595784370 595784174 1.820000e-23 121.0
93 TraesCS7D01G112900 chr1B 95.455 44 1 1 2119 2161 567661683 567661726 6.670000e-08 69.4
94 TraesCS7D01G112900 chr3A 82.564 195 28 5 3518 3711 113866701 113866890 2.300000e-37 167.0
95 TraesCS7D01G112900 chrUn 92.500 40 1 2 92 131 80090762 80090799 5.190000e-04 56.5
96 TraesCS7D01G112900 chr4B 94.286 35 2 0 99 133 624153787 624153753 2.000000e-03 54.7
97 TraesCS7D01G112900 chr3B 94.286 35 2 0 99 133 90158267 90158233 2.000000e-03 54.7
98 TraesCS7D01G112900 chr3B 94.286 35 2 0 99 133 748737160 748737126 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G112900 chr7D 69054463 69058185 3722 False 1438.160000 6876 97.101600 1 3723 5 chr7D.!!$F6 3722
1 TraesCS7D01G112900 chr7D 66507465 66508450 985 True 701.000000 701 80.334000 1000 1971 1 chr7D.!!$R3 971
2 TraesCS7D01G112900 chr7D 68928631 68929619 988 False 695.000000 695 80.215000 994 1968 1 chr7D.!!$F2 974
3 TraesCS7D01G112900 chr7D 85345078 85345850 772 False 464.000000 464 78.089000 781 1542 1 chr7D.!!$F4 761
4 TraesCS7D01G112900 chr7D 66516186 66517136 950 True 429.000000 429 75.743000 965 1947 1 chr7D.!!$R4 982
5 TraesCS7D01G112900 chr7D 68983408 68985070 1662 False 358.500000 556 83.961500 821 2766 2 chr7D.!!$F5 1945
6 TraesCS7D01G112900 chr7D 73178054 73178630 576 False 281.000000 281 76.033000 808 1405 1 chr7D.!!$F3 597
7 TraesCS7D01G112900 chr7D 82448707 82449396 689 True 246.000000 246 74.059000 841 1533 1 chr7D.!!$R5 692
8 TraesCS7D01G112900 chr7D 66413125 66415746 2621 True 232.500000 285 86.982000 1624 2785 2 chr7D.!!$R8 1161
9 TraesCS7D01G112900 chr7D 548818062 548818607 545 True 207.000000 207 74.606000 1000 1548 1 chr7D.!!$R6 548
10 TraesCS7D01G112900 chr7A 74883029 74886424 3395 False 495.611111 1670 94.674111 1 3514 9 chr7A.!!$F6 3513
11 TraesCS7D01G112900 chr7A 86466335 86467122 787 False 492.000000 492 78.463000 773 1542 1 chr7A.!!$F4 769
12 TraesCS7D01G112900 chr7A 74856915 74857469 554 False 255.000000 255 75.699000 994 1548 1 chr7A.!!$F3 554
13 TraesCS7D01G112900 chr7A 70888199 70889152 953 True 242.500000 279 84.880000 1624 2789 2 chr7A.!!$R5 1165
14 TraesCS7D01G112900 chr7A 634362728 634363388 660 True 217.000000 217 73.894000 807 1442 1 chr7A.!!$R4 635
15 TraesCS7D01G112900 chr7B 10946298 10948470 2172 False 735.550000 1249 93.464500 708 3019 4 chr7B.!!$F7 2311
16 TraesCS7D01G112900 chr7B 7560189 7560830 641 True 425.000000 425 79.059000 841 1486 1 chr7B.!!$R1 645
17 TraesCS7D01G112900 chr7B 10639199 10639965 766 False 411.000000 411 77.125000 774 1548 1 chr7B.!!$F3 774
18 TraesCS7D01G112900 chr7B 10559838 10560776 938 False 228.500000 268 85.299500 1681 2789 2 chr7B.!!$F6 1108
19 TraesCS7D01G112900 chr6D 3746833 3747375 542 True 332.350000 610 91.967000 99 596 2 chr6D.!!$R2 497
20 TraesCS7D01G112900 chr2B 55209786 55210338 552 True 348.000000 348 78.657000 839 1405 1 chr2B.!!$R1 566
21 TraesCS7D01G112900 chr2B 55855361 55855926 565 True 346.000000 346 78.328000 839 1409 1 chr2B.!!$R2 570
22 TraesCS7D01G112900 chr2B 76516805 76517518 713 True 311.000000 311 75.516000 858 1548 1 chr2B.!!$R3 690
23 TraesCS7D01G112900 chr2B 135792496 135796003 3507 False 300.333333 496 81.407000 823 1968 3 chr2B.!!$F1 1145
24 TraesCS7D01G112900 chr6B 683648940 683649505 565 False 339.500000 394 88.873000 120 598 2 chr6B.!!$F3 478
25 TraesCS7D01G112900 chr2D 33241592 33242168 576 True 327.000000 327 77.537000 822 1409 1 chr2D.!!$R2 587
26 TraesCS7D01G112900 chr2A 36411300 36411858 558 True 315.000000 315 77.375000 839 1406 1 chr2A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 683 0.033601 AGGTTGTGTTGGCCACTTGA 60.034 50.000 3.88 0.0 44.81 3.02 F
644 693 0.104120 GGCCACTTGAACAACAACCC 59.896 55.000 0.00 0.0 34.56 4.11 F
645 694 1.111277 GCCACTTGAACAACAACCCT 58.889 50.000 0.00 0.0 34.56 4.34 F
646 695 1.202405 GCCACTTGAACAACAACCCTG 60.202 52.381 0.00 0.0 34.56 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 4293 0.321919 GGGATGCTGCAGTTGAGTCA 60.322 55.000 16.64 3.54 0.0 3.41 R
2556 5892 0.487325 TCAGGGAACAGTGAGGAGGA 59.513 55.000 0.00 0.00 0.0 3.71 R
2603 7292 3.744660 ACAGGTTCAAGTGACAAGATCC 58.255 45.455 0.00 0.00 0.0 3.36 R
2792 7489 0.533032 TGGATTCACATGCCGTCGTA 59.467 50.000 0.00 0.00 0.0 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.066215 TGCCACTACGACAAGCATCAT 60.066 47.619 0.00 0.00 0.00 2.45
42 43 4.028131 ACAAGCATCATTGACCATCCATT 58.972 39.130 0.00 0.00 34.20 3.16
67 68 8.684386 TGAACATAAGTCATTAGTCCAAAACA 57.316 30.769 0.00 0.00 0.00 2.83
68 69 9.295825 TGAACATAAGTCATTAGTCCAAAACAT 57.704 29.630 0.00 0.00 0.00 2.71
69 70 9.774742 GAACATAAGTCATTAGTCCAAAACATC 57.225 33.333 0.00 0.00 0.00 3.06
70 71 7.974675 ACATAAGTCATTAGTCCAAAACATCG 58.025 34.615 0.00 0.00 0.00 3.84
229 278 2.450609 TCAACGAAGACCCTTAGTGC 57.549 50.000 0.00 0.00 0.00 4.40
235 284 2.047560 GACCCTTAGTGCGGCGTT 60.048 61.111 9.37 0.00 0.00 4.84
258 307 2.484264 CGGTGGTGATCTGTTTTCCTTC 59.516 50.000 0.00 0.00 0.00 3.46
289 338 2.503356 AGCTGGTTCGAATCCTCATTCT 59.497 45.455 5.84 0.00 36.93 2.40
298 347 4.393062 TCGAATCCTCATTCTGCACTTTTC 59.607 41.667 0.00 0.00 36.93 2.29
339 388 7.499895 AGAATGGGTAAGTAGAAAACGTGAAAA 59.500 33.333 0.00 0.00 0.00 2.29
366 415 4.202315 TGAGGACCAAAAGAATCGAACTCA 60.202 41.667 0.00 0.00 0.00 3.41
367 416 4.911390 AGGACCAAAAGAATCGAACTCAT 58.089 39.130 0.00 0.00 0.00 2.90
371 420 5.063204 ACCAAAAGAATCGAACTCATGACA 58.937 37.500 0.00 0.00 0.00 3.58
380 429 3.066380 CGAACTCATGACATCAACACCA 58.934 45.455 0.00 0.00 0.00 4.17
381 430 3.686241 CGAACTCATGACATCAACACCAT 59.314 43.478 0.00 0.00 0.00 3.55
382 431 4.436451 CGAACTCATGACATCAACACCATG 60.436 45.833 0.00 0.00 38.12 3.66
383 432 2.751259 ACTCATGACATCAACACCATGC 59.249 45.455 0.00 0.00 37.06 4.06
385 434 2.750712 TCATGACATCAACACCATGCAG 59.249 45.455 0.00 0.00 37.06 4.41
386 435 1.536940 TGACATCAACACCATGCAGG 58.463 50.000 0.00 0.00 45.67 4.85
387 436 0.813184 GACATCAACACCATGCAGGG 59.187 55.000 17.55 17.55 43.89 4.45
388 437 1.252904 ACATCAACACCATGCAGGGC 61.253 55.000 19.26 0.00 43.89 5.19
389 438 1.077086 ATCAACACCATGCAGGGCA 59.923 52.632 19.26 0.00 44.86 5.36
390 439 0.542467 ATCAACACCATGCAGGGCAA 60.542 50.000 19.26 0.00 43.62 4.52
391 440 0.758310 TCAACACCATGCAGGGCAAA 60.758 50.000 19.26 0.00 43.62 3.68
392 441 0.600782 CAACACCATGCAGGGCAAAC 60.601 55.000 19.26 0.00 43.62 2.93
393 442 2.086251 AACACCATGCAGGGCAAACG 62.086 55.000 19.26 3.50 43.62 3.60
394 443 2.203480 ACCATGCAGGGCAAACGT 60.203 55.556 19.26 0.00 43.62 3.99
395 444 1.074072 ACCATGCAGGGCAAACGTA 59.926 52.632 19.26 0.00 43.62 3.57
396 445 0.960364 ACCATGCAGGGCAAACGTAG 60.960 55.000 19.26 0.00 43.62 3.51
397 446 0.960364 CCATGCAGGGCAAACGTAGT 60.960 55.000 3.55 0.00 43.62 2.73
410 459 2.814280 ACGTAGTTGACCTTCCACTG 57.186 50.000 0.00 0.00 37.78 3.66
411 460 2.313317 ACGTAGTTGACCTTCCACTGA 58.687 47.619 0.00 0.00 37.78 3.41
412 461 2.296471 ACGTAGTTGACCTTCCACTGAG 59.704 50.000 0.00 0.00 37.78 3.35
413 462 2.352814 CGTAGTTGACCTTCCACTGAGG 60.353 54.545 0.00 0.00 40.24 3.86
415 464 7.965735 ACGTAGTTGACCTTCCACTGAGGTA 62.966 48.000 0.00 0.00 43.53 3.08
420 469 2.817665 ACCTTCCACTGAGGTACTACC 58.182 52.381 0.00 0.00 45.50 3.18
437 486 8.312896 GGTACTACCTCTCTTTTGAAGAAAAG 57.687 38.462 0.00 0.00 41.18 2.27
438 487 7.932491 GGTACTACCTCTCTTTTGAAGAAAAGT 59.068 37.037 0.00 0.00 40.94 2.66
439 488 9.978044 GTACTACCTCTCTTTTGAAGAAAAGTA 57.022 33.333 0.00 0.00 45.72 2.24
441 490 8.706521 ACTACCTCTCTTTTGAAGAAAAGTAGT 58.293 33.333 14.29 14.29 45.72 2.73
442 491 9.549078 CTACCTCTCTTTTGAAGAAAAGTAGTT 57.451 33.333 0.00 0.00 45.72 2.24
443 492 8.439993 ACCTCTCTTTTGAAGAAAAGTAGTTC 57.560 34.615 0.00 0.00 45.72 3.01
444 493 7.224949 ACCTCTCTTTTGAAGAAAAGTAGTTCG 59.775 37.037 0.00 0.00 45.72 3.95
445 494 7.224949 CCTCTCTTTTGAAGAAAAGTAGTTCGT 59.775 37.037 0.00 0.00 45.72 3.85
446 495 7.906160 TCTCTTTTGAAGAAAAGTAGTTCGTG 58.094 34.615 0.00 0.00 45.72 4.35
447 496 7.762615 TCTCTTTTGAAGAAAAGTAGTTCGTGA 59.237 33.333 0.00 0.00 45.72 4.35
448 497 8.433421 TCTTTTGAAGAAAAGTAGTTCGTGAT 57.567 30.769 0.00 0.00 45.72 3.06
449 498 9.537192 TCTTTTGAAGAAAAGTAGTTCGTGATA 57.463 29.630 0.00 0.00 45.72 2.15
506 555 8.695284 TCAAAATTCAATTACAAATTTCGTCCG 58.305 29.630 0.00 0.00 34.78 4.79
507 556 8.695284 CAAAATTCAATTACAAATTTCGTCCGA 58.305 29.630 0.00 0.00 34.78 4.55
508 557 8.804688 AAATTCAATTACAAATTTCGTCCGAA 57.195 26.923 0.00 0.00 31.17 4.30
509 558 8.804688 AATTCAATTACAAATTTCGTCCGAAA 57.195 26.923 16.19 16.19 46.37 3.46
527 576 5.649430 CGAAATTTGTTCGGAATTTCTCG 57.351 39.130 15.92 5.47 45.01 4.04
528 577 4.553429 CGAAATTTGTTCGGAATTTCTCGG 59.447 41.667 15.92 2.75 45.01 4.63
529 578 5.447624 AAATTTGTTCGGAATTTCTCGGT 57.552 34.783 0.00 0.00 32.76 4.69
530 579 6.563222 AAATTTGTTCGGAATTTCTCGGTA 57.437 33.333 0.00 0.00 32.76 4.02
531 580 6.563222 AATTTGTTCGGAATTTCTCGGTAA 57.437 33.333 0.00 0.00 0.00 2.85
532 581 4.996062 TTGTTCGGAATTTCTCGGTAAC 57.004 40.909 0.00 1.99 0.00 2.50
533 582 3.328505 TGTTCGGAATTTCTCGGTAACC 58.671 45.455 0.00 0.00 0.00 2.85
549 598 2.845363 AACCGTGGTTACCGAGAATT 57.155 45.000 1.57 0.00 36.46 2.17
550 599 2.845363 ACCGTGGTTACCGAGAATTT 57.155 45.000 0.00 0.00 0.00 1.82
551 600 2.691927 ACCGTGGTTACCGAGAATTTC 58.308 47.619 0.00 0.00 0.00 2.17
552 601 4.408343 AACCGTGGTTACCGAGAATTTCG 61.408 47.826 1.57 3.87 41.71 3.46
559 608 3.573491 CGAGAATTTCGCCCGCCC 61.573 66.667 0.00 0.00 43.22 6.13
560 609 2.437716 GAGAATTTCGCCCGCCCA 60.438 61.111 0.00 0.00 0.00 5.36
561 610 2.750237 AGAATTTCGCCCGCCCAC 60.750 61.111 0.00 0.00 0.00 4.61
562 611 4.174129 GAATTTCGCCCGCCCACG 62.174 66.667 0.00 0.00 39.67 4.94
563 612 4.708386 AATTTCGCCCGCCCACGA 62.708 61.111 0.00 0.00 43.93 4.35
569 618 2.750237 GCCCGCCCACGAGAAAAT 60.750 61.111 0.00 0.00 43.93 1.82
570 619 2.340328 GCCCGCCCACGAGAAAATT 61.340 57.895 0.00 0.00 43.93 1.82
571 620 1.873270 GCCCGCCCACGAGAAAATTT 61.873 55.000 0.00 0.00 43.93 1.82
572 621 0.109319 CCCGCCCACGAGAAAATTTG 60.109 55.000 0.00 0.00 43.93 2.32
573 622 0.732538 CCGCCCACGAGAAAATTTGC 60.733 55.000 0.00 0.00 43.93 3.68
574 623 0.732538 CGCCCACGAGAAAATTTGCC 60.733 55.000 0.00 0.00 43.93 4.52
575 624 0.389817 GCCCACGAGAAAATTTGCCC 60.390 55.000 0.00 0.00 0.00 5.36
576 625 0.965439 CCCACGAGAAAATTTGCCCA 59.035 50.000 0.00 0.00 0.00 5.36
577 626 1.550072 CCCACGAGAAAATTTGCCCAT 59.450 47.619 0.00 0.00 0.00 4.00
578 627 2.028203 CCCACGAGAAAATTTGCCCATT 60.028 45.455 0.00 0.00 0.00 3.16
579 628 3.253230 CCACGAGAAAATTTGCCCATTC 58.747 45.455 0.00 0.00 0.00 2.67
580 629 2.916716 CACGAGAAAATTTGCCCATTCG 59.083 45.455 4.46 4.46 0.00 3.34
581 630 2.094752 ACGAGAAAATTTGCCCATTCGG 60.095 45.455 9.57 0.00 0.00 4.30
582 631 2.163412 CGAGAAAATTTGCCCATTCGGA 59.837 45.455 0.00 0.00 0.00 4.55
583 632 3.366883 CGAGAAAATTTGCCCATTCGGAA 60.367 43.478 0.00 0.00 0.00 4.30
584 633 4.677779 CGAGAAAATTTGCCCATTCGGAAT 60.678 41.667 0.00 0.00 0.00 3.01
585 634 4.758688 AGAAAATTTGCCCATTCGGAATC 58.241 39.130 0.00 0.00 0.00 2.52
586 635 3.541996 AAATTTGCCCATTCGGAATCC 57.458 42.857 0.00 0.00 0.00 3.01
587 636 2.157640 ATTTGCCCATTCGGAATCCA 57.842 45.000 0.00 0.00 0.00 3.41
588 637 1.930251 TTTGCCCATTCGGAATCCAA 58.070 45.000 0.00 2.59 0.00 3.53
589 638 1.930251 TTGCCCATTCGGAATCCAAA 58.070 45.000 0.00 0.00 0.00 3.28
590 639 1.930251 TGCCCATTCGGAATCCAAAA 58.070 45.000 0.00 0.00 0.00 2.44
591 640 1.548269 TGCCCATTCGGAATCCAAAAC 59.452 47.619 0.00 0.00 0.00 2.43
592 641 1.134818 GCCCATTCGGAATCCAAAACC 60.135 52.381 0.00 0.00 0.00 3.27
593 642 2.456577 CCCATTCGGAATCCAAAACCT 58.543 47.619 0.00 0.00 0.00 3.50
594 643 2.831526 CCCATTCGGAATCCAAAACCTT 59.168 45.455 0.00 0.00 0.00 3.50
595 644 3.368323 CCCATTCGGAATCCAAAACCTTG 60.368 47.826 0.00 0.00 0.00 3.61
596 645 3.509575 CCATTCGGAATCCAAAACCTTGA 59.490 43.478 0.00 0.00 34.14 3.02
597 646 4.160252 CCATTCGGAATCCAAAACCTTGAT 59.840 41.667 0.00 0.00 34.14 2.57
598 647 5.343249 CATTCGGAATCCAAAACCTTGATC 58.657 41.667 0.00 0.00 34.14 2.92
599 648 4.027674 TCGGAATCCAAAACCTTGATCA 57.972 40.909 0.00 0.00 34.14 2.92
600 649 3.756434 TCGGAATCCAAAACCTTGATCAC 59.244 43.478 0.00 0.00 34.14 3.06
601 650 3.119495 CGGAATCCAAAACCTTGATCACC 60.119 47.826 0.00 0.00 34.14 4.02
602 651 3.831911 GGAATCCAAAACCTTGATCACCA 59.168 43.478 0.00 0.00 34.14 4.17
603 652 4.321974 GGAATCCAAAACCTTGATCACCAC 60.322 45.833 0.00 0.00 34.14 4.16
616 665 0.884259 TCACCACAACGCCATGACAG 60.884 55.000 0.00 0.00 0.00 3.51
617 666 1.600636 ACCACAACGCCATGACAGG 60.601 57.895 0.00 0.00 0.00 4.00
618 667 1.600636 CCACAACGCCATGACAGGT 60.601 57.895 0.00 0.00 0.00 4.00
619 668 1.172180 CCACAACGCCATGACAGGTT 61.172 55.000 0.00 0.00 0.00 3.50
620 669 0.040157 CACAACGCCATGACAGGTTG 60.040 55.000 13.11 13.11 43.95 3.77
621 670 0.465460 ACAACGCCATGACAGGTTGT 60.465 50.000 14.03 14.03 45.74 3.32
622 671 0.040157 CAACGCCATGACAGGTTGTG 60.040 55.000 0.00 0.00 36.05 3.33
623 672 0.465460 AACGCCATGACAGGTTGTGT 60.465 50.000 0.00 0.00 44.49 3.72
624 673 0.465460 ACGCCATGACAGGTTGTGTT 60.465 50.000 0.00 0.00 40.56 3.32
625 674 0.040157 CGCCATGACAGGTTGTGTTG 60.040 55.000 0.00 0.00 40.56 3.33
626 675 0.314935 GCCATGACAGGTTGTGTTGG 59.685 55.000 0.00 3.74 40.56 3.77
627 676 0.314935 CCATGACAGGTTGTGTTGGC 59.685 55.000 0.00 0.00 40.56 4.52
628 677 0.314935 CATGACAGGTTGTGTTGGCC 59.685 55.000 0.00 0.00 40.56 5.36
629 678 0.106268 ATGACAGGTTGTGTTGGCCA 60.106 50.000 0.00 0.00 40.56 5.36
630 679 1.034838 TGACAGGTTGTGTTGGCCAC 61.035 55.000 3.88 0.75 40.56 5.01
631 680 0.751643 GACAGGTTGTGTTGGCCACT 60.752 55.000 3.88 0.00 44.81 4.00
632 681 0.324275 ACAGGTTGTGTTGGCCACTT 60.324 50.000 3.88 0.00 44.81 3.16
633 682 0.102844 CAGGTTGTGTTGGCCACTTG 59.897 55.000 3.88 0.00 44.81 3.16
634 683 0.033601 AGGTTGTGTTGGCCACTTGA 60.034 50.000 3.88 0.00 44.81 3.02
635 684 0.820871 GGTTGTGTTGGCCACTTGAA 59.179 50.000 3.88 0.00 44.81 2.69
636 685 1.470805 GGTTGTGTTGGCCACTTGAAC 60.471 52.381 3.88 6.64 44.81 3.18
637 686 1.203523 GTTGTGTTGGCCACTTGAACA 59.796 47.619 3.88 3.34 44.81 3.18
638 687 1.550327 TGTGTTGGCCACTTGAACAA 58.450 45.000 3.88 0.00 44.81 2.83
639 688 1.203523 TGTGTTGGCCACTTGAACAAC 59.796 47.619 3.88 0.00 44.81 3.32
641 690 1.895798 TGTTGGCCACTTGAACAACAA 59.104 42.857 3.88 0.00 46.94 2.83
642 691 2.267426 GTTGGCCACTTGAACAACAAC 58.733 47.619 3.88 0.00 41.95 3.32
643 692 0.820871 TGGCCACTTGAACAACAACC 59.179 50.000 0.00 0.00 34.56 3.77
644 693 0.104120 GGCCACTTGAACAACAACCC 59.896 55.000 0.00 0.00 34.56 4.11
645 694 1.111277 GCCACTTGAACAACAACCCT 58.889 50.000 0.00 0.00 34.56 4.34
646 695 1.202405 GCCACTTGAACAACAACCCTG 60.202 52.381 0.00 0.00 34.56 4.45
647 696 2.374184 CCACTTGAACAACAACCCTGA 58.626 47.619 0.00 0.00 34.56 3.86
648 697 2.757868 CCACTTGAACAACAACCCTGAA 59.242 45.455 0.00 0.00 34.56 3.02
649 698 3.181487 CCACTTGAACAACAACCCTGAAG 60.181 47.826 0.00 0.00 34.56 3.02
650 699 3.694072 CACTTGAACAACAACCCTGAAGA 59.306 43.478 0.00 0.00 34.56 2.87
651 700 4.339247 CACTTGAACAACAACCCTGAAGAT 59.661 41.667 0.00 0.00 34.56 2.40
652 701 5.530915 CACTTGAACAACAACCCTGAAGATA 59.469 40.000 0.00 0.00 34.56 1.98
653 702 5.531287 ACTTGAACAACAACCCTGAAGATAC 59.469 40.000 0.00 0.00 34.56 2.24
685 734 7.615403 ACATTGAGAACACATACTCTACATGT 58.385 34.615 2.69 2.69 37.09 3.21
1260 3725 4.192000 GCTGTGCAGTGCGACTAT 57.808 55.556 11.20 0.00 0.00 2.12
1533 4101 2.768492 GCCATGCCCGCTTCTTGAG 61.768 63.158 0.00 0.00 0.00 3.02
1556 4168 5.768164 AGTCTTCCCGAATTTGTTAACATGT 59.232 36.000 9.56 0.00 0.00 3.21
1571 4183 2.857483 ACATGTGTCGGAATTTGACCA 58.143 42.857 0.00 7.13 35.46 4.02
1629 4293 5.885230 TCTTGATCGCATTTGATCTTTGT 57.115 34.783 5.45 0.00 44.12 2.83
1676 4340 1.262640 AACCGGAATAGTCACCGCCT 61.263 55.000 9.46 0.00 46.59 5.52
1972 4659 2.307686 TCCATGTCCCCAACTTCTTACC 59.692 50.000 0.00 0.00 0.00 2.85
2007 4788 3.699038 TGTCTGGAAAAACAGTTTCCTGG 59.301 43.478 18.80 12.12 46.16 4.45
2059 5007 3.002862 TGTTGTATTTGCGTTGTGGTCTC 59.997 43.478 0.00 0.00 0.00 3.36
2090 5038 6.874134 TCAGTTAGGACTAATTTGCTTCAGTC 59.126 38.462 0.00 0.00 37.32 3.51
2184 5262 6.402983 GCATATTCACACTCTTGGAACTTGAG 60.403 42.308 0.00 0.00 35.36 3.02
2236 5506 5.631992 GTTTACTGAAACTGCTGCTAATCC 58.368 41.667 0.00 0.00 41.55 3.01
2237 5507 3.423539 ACTGAAACTGCTGCTAATCCA 57.576 42.857 0.00 0.00 0.00 3.41
2248 5518 4.222810 TGCTGCTAATCCACTTCAGTTAGA 59.777 41.667 0.00 0.00 0.00 2.10
2329 5613 9.891828 TGAAGCTTAGTTTGTTGTTACATATTG 57.108 29.630 0.00 0.00 33.44 1.90
2444 5765 5.134725 AGAAAATTCAGGCTGTATCCCAT 57.865 39.130 15.27 0.00 0.00 4.00
2456 5777 5.296035 GGCTGTATCCCATAAAACACTACAC 59.704 44.000 0.00 0.00 0.00 2.90
2461 5782 5.168647 TCCCATAAAACACTACACGGAAT 57.831 39.130 0.00 0.00 0.00 3.01
2505 5841 6.481976 TCAGGTTACTTGACATGTGTTACTTG 59.518 38.462 1.15 6.41 33.38 3.16
2506 5842 6.481976 CAGGTTACTTGACATGTGTTACTTGA 59.518 38.462 1.15 0.00 0.00 3.02
2507 5843 6.482308 AGGTTACTTGACATGTGTTACTTGAC 59.518 38.462 1.15 0.00 0.00 3.18
2508 5844 6.259167 GGTTACTTGACATGTGTTACTTGACA 59.741 38.462 1.15 0.00 0.00 3.58
2509 5845 7.041372 GGTTACTTGACATGTGTTACTTGACAT 60.041 37.037 1.15 0.00 31.03 3.06
2532 5868 9.013229 ACATGCTTTCAGATTATTGTGAGTTTA 57.987 29.630 0.00 0.00 0.00 2.01
2556 5892 7.902920 ATGACATGATTATGCCTAACCTTTT 57.097 32.000 0.00 0.00 37.85 2.27
2825 7555 4.402155 TGTGAATCCAGAACTTTTTGCACT 59.598 37.500 0.00 0.00 0.00 4.40
2826 7556 5.105392 TGTGAATCCAGAACTTTTTGCACTT 60.105 36.000 0.00 0.00 0.00 3.16
2827 7557 6.096141 TGTGAATCCAGAACTTTTTGCACTTA 59.904 34.615 0.00 0.00 0.00 2.24
3006 7741 2.778299 TGTTTGCGCTCTTATTCTGGT 58.222 42.857 9.73 0.00 0.00 4.00
3092 7827 0.250295 TTCAGTTTAGCTGTGCCGCT 60.250 50.000 0.00 0.00 45.23 5.52
3139 7874 8.332777 GAAAATGAGTTTCTGTTTTGAGTGAG 57.667 34.615 0.00 0.00 42.15 3.51
3141 7876 7.630242 AATGAGTTTCTGTTTTGAGTGAGAA 57.370 32.000 0.00 0.00 0.00 2.87
3157 7892 1.458827 GAGAACTCTCAACTTGCTGCG 59.541 52.381 1.73 0.00 42.42 5.18
3199 7934 2.024176 TTTAGATCGCAAGCAGTCCC 57.976 50.000 0.00 0.00 37.18 4.46
3202 7937 0.036732 AGATCGCAAGCAGTCCCAAA 59.963 50.000 0.00 0.00 37.18 3.28
3220 7955 3.369385 CAAAGCTGACAAGAGTTTGCAG 58.631 45.455 0.00 0.00 39.40 4.41
3290 8026 6.411376 TCCATGTATTTCGGTAAGTGTTCAT 58.589 36.000 0.00 0.00 0.00 2.57
3440 8384 7.751768 ATTATAGAAGGCTCAGGCATTTTAC 57.248 36.000 0.00 0.00 42.73 2.01
3474 8418 8.483307 AGTTTTCTAAAAGTGTTCACGACTTA 57.517 30.769 0.00 0.00 33.20 2.24
3476 8420 9.545611 GTTTTCTAAAAGTGTTCACGACTTAAA 57.454 29.630 0.00 0.00 33.20 1.52
3485 8429 8.617290 AGTGTTCACGACTTAAAAATAATCCT 57.383 30.769 0.00 0.00 0.00 3.24
3486 8430 8.718734 AGTGTTCACGACTTAAAAATAATCCTC 58.281 33.333 0.00 0.00 0.00 3.71
3487 8431 8.718734 GTGTTCACGACTTAAAAATAATCCTCT 58.281 33.333 0.00 0.00 0.00 3.69
3515 8459 7.997071 GCTTTAGAAAAGCTTTCACACATTAC 58.003 34.615 13.10 0.00 40.01 1.89
3516 8460 7.647715 GCTTTAGAAAAGCTTTCACACATTACA 59.352 33.333 13.10 0.00 40.01 2.41
3517 8461 8.850454 TTTAGAAAAGCTTTCACACATTACAC 57.150 30.769 13.10 0.00 0.00 2.90
3518 8462 6.449635 AGAAAAGCTTTCACACATTACACA 57.550 33.333 13.10 0.00 0.00 3.72
3519 8463 6.265577 AGAAAAGCTTTCACACATTACACAC 58.734 36.000 13.10 0.00 0.00 3.82
3520 8464 5.574891 AAAGCTTTCACACATTACACACA 57.425 34.783 5.69 0.00 0.00 3.72
3521 8465 5.772825 AAGCTTTCACACATTACACACAT 57.227 34.783 0.00 0.00 0.00 3.21
3522 8466 5.772825 AGCTTTCACACATTACACACATT 57.227 34.783 0.00 0.00 0.00 2.71
3523 8467 6.147864 AGCTTTCACACATTACACACATTT 57.852 33.333 0.00 0.00 0.00 2.32
3524 8468 7.270757 AGCTTTCACACATTACACACATTTA 57.729 32.000 0.00 0.00 0.00 1.40
3525 8469 7.138736 AGCTTTCACACATTACACACATTTAC 58.861 34.615 0.00 0.00 0.00 2.01
3526 8470 6.086241 GCTTTCACACATTACACACATTTACG 59.914 38.462 0.00 0.00 0.00 3.18
3527 8471 6.606234 TTCACACATTACACACATTTACGT 57.394 33.333 0.00 0.00 0.00 3.57
3528 8472 5.980025 TCACACATTACACACATTTACGTG 58.020 37.500 0.00 0.00 42.81 4.49
3529 8473 4.610951 CACACATTACACACATTTACGTGC 59.389 41.667 0.00 0.00 40.73 5.34
3530 8474 3.837999 CACATTACACACATTTACGTGCG 59.162 43.478 0.00 0.00 40.73 5.34
3531 8475 3.120477 ACATTACACACATTTACGTGCGG 60.120 43.478 0.00 0.00 40.73 5.69
3532 8476 1.430479 TACACACATTTACGTGCGGG 58.570 50.000 0.00 0.00 40.73 6.13
3533 8477 0.249953 ACACACATTTACGTGCGGGA 60.250 50.000 0.00 0.00 40.73 5.14
3534 8478 0.442310 CACACATTTACGTGCGGGAG 59.558 55.000 0.00 0.00 40.73 4.30
3535 8479 0.319083 ACACATTTACGTGCGGGAGA 59.681 50.000 0.00 0.00 40.73 3.71
3536 8480 1.270412 ACACATTTACGTGCGGGAGAA 60.270 47.619 0.00 0.00 40.73 2.87
3537 8481 1.393539 CACATTTACGTGCGGGAGAAG 59.606 52.381 0.00 0.00 0.00 2.85
3538 8482 1.006832 CATTTACGTGCGGGAGAAGG 58.993 55.000 0.00 0.00 0.00 3.46
3539 8483 0.107848 ATTTACGTGCGGGAGAAGGG 60.108 55.000 0.00 0.00 0.00 3.95
3540 8484 2.791501 TTTACGTGCGGGAGAAGGGC 62.792 60.000 0.00 0.00 0.00 5.19
3549 8493 4.344865 GAGAAGGGCGGCCAACCA 62.345 66.667 31.59 0.00 34.57 3.67
3550 8494 4.351054 AGAAGGGCGGCCAACCAG 62.351 66.667 31.59 0.00 34.57 4.00
3565 8509 3.129502 CAGCATGGCCACCTGACG 61.130 66.667 24.22 5.43 0.00 4.35
3568 8512 2.438975 CATGGCCACCTGACGCAT 60.439 61.111 8.16 0.00 0.00 4.73
3569 8513 2.438975 ATGGCCACCTGACGCATG 60.439 61.111 8.16 0.00 0.00 4.06
3570 8514 3.272364 ATGGCCACCTGACGCATGT 62.272 57.895 8.16 0.00 0.00 3.21
3571 8515 2.672996 GGCCACCTGACGCATGTT 60.673 61.111 0.00 0.00 0.00 2.71
3572 8516 2.562912 GCCACCTGACGCATGTTG 59.437 61.111 0.00 0.00 0.00 3.33
3573 8517 2.981560 GCCACCTGACGCATGTTGG 61.982 63.158 0.00 0.00 0.00 3.77
3574 8518 1.600636 CCACCTGACGCATGTTGGT 60.601 57.895 0.00 0.00 36.21 3.67
3575 8519 1.172180 CCACCTGACGCATGTTGGTT 61.172 55.000 0.00 0.00 34.42 3.67
3576 8520 0.040157 CACCTGACGCATGTTGGTTG 60.040 55.000 0.00 0.00 34.42 3.77
3577 8521 1.172180 ACCTGACGCATGTTGGTTGG 61.172 55.000 0.00 0.83 33.35 3.77
3578 8522 1.081242 CTGACGCATGTTGGTTGGC 60.081 57.895 0.00 0.00 0.00 4.52
3579 8523 2.258286 GACGCATGTTGGTTGGCC 59.742 61.111 0.00 0.00 0.00 5.36
3580 8524 3.609214 GACGCATGTTGGTTGGCCG 62.609 63.158 0.00 0.00 37.67 6.13
3581 8525 3.669344 CGCATGTTGGTTGGCCGT 61.669 61.111 0.00 0.00 37.67 5.68
3582 8526 2.049248 GCATGTTGGTTGGCCGTG 60.049 61.111 0.00 0.00 37.67 4.94
3583 8527 2.650196 CATGTTGGTTGGCCGTGG 59.350 61.111 0.00 0.00 37.67 4.94
3584 8528 3.302344 ATGTTGGTTGGCCGTGGC 61.302 61.111 1.16 1.16 37.67 5.01
3590 8534 2.975799 GTTGGCCGTGGCGAGAAA 60.976 61.111 4.53 0.00 43.06 2.52
3591 8535 2.975799 TTGGCCGTGGCGAGAAAC 60.976 61.111 4.53 0.00 43.06 2.78
3592 8536 3.469863 TTGGCCGTGGCGAGAAACT 62.470 57.895 4.53 0.00 43.06 2.66
3593 8537 2.668550 GGCCGTGGCGAGAAACTT 60.669 61.111 4.53 0.00 43.06 2.66
3594 8538 2.258726 GGCCGTGGCGAGAAACTTT 61.259 57.895 4.53 0.00 43.06 2.66
3595 8539 1.652563 GCCGTGGCGAGAAACTTTT 59.347 52.632 0.00 0.00 0.00 2.27
3596 8540 0.030235 GCCGTGGCGAGAAACTTTTT 59.970 50.000 0.00 0.00 0.00 1.94
3597 8541 1.264826 GCCGTGGCGAGAAACTTTTTA 59.735 47.619 0.00 0.00 0.00 1.52
3598 8542 2.095415 GCCGTGGCGAGAAACTTTTTAT 60.095 45.455 0.00 0.00 0.00 1.40
3599 8543 3.125658 GCCGTGGCGAGAAACTTTTTATA 59.874 43.478 0.00 0.00 0.00 0.98
3600 8544 4.201881 GCCGTGGCGAGAAACTTTTTATAT 60.202 41.667 0.00 0.00 0.00 0.86
3601 8545 5.675323 GCCGTGGCGAGAAACTTTTTATATT 60.675 40.000 0.00 0.00 0.00 1.28
3602 8546 6.319399 CCGTGGCGAGAAACTTTTTATATTT 58.681 36.000 0.00 0.00 0.00 1.40
3603 8547 6.804783 CCGTGGCGAGAAACTTTTTATATTTT 59.195 34.615 0.00 0.00 0.00 1.82
3604 8548 7.327518 CCGTGGCGAGAAACTTTTTATATTTTT 59.672 33.333 0.00 0.00 0.00 1.94
3689 8633 9.413734 AGATTATTTTTAGAAGATGGAAGTGGG 57.586 33.333 0.00 0.00 0.00 4.61
3690 8634 9.408648 GATTATTTTTAGAAGATGGAAGTGGGA 57.591 33.333 0.00 0.00 0.00 4.37
3691 8635 8.575649 TTATTTTTAGAAGATGGAAGTGGGAC 57.424 34.615 0.00 0.00 0.00 4.46
3692 8636 5.843019 TTTTAGAAGATGGAAGTGGGACT 57.157 39.130 0.00 0.00 0.00 3.85
3693 8637 5.843019 TTTAGAAGATGGAAGTGGGACTT 57.157 39.130 0.00 0.00 41.95 3.01
3694 8638 5.843019 TTAGAAGATGGAAGTGGGACTTT 57.157 39.130 0.00 0.00 38.80 2.66
3695 8639 4.731313 AGAAGATGGAAGTGGGACTTTT 57.269 40.909 0.00 0.00 38.80 2.27
3696 8640 5.066913 AGAAGATGGAAGTGGGACTTTTT 57.933 39.130 0.00 0.00 38.80 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.244654 TGACTTATGTTCAATGGATGGTCAA 58.755 36.000 0.00 0.00 0.00 3.18
42 43 8.684386 TGTTTTGGACTAATGACTTATGTTCA 57.316 30.769 0.00 0.00 0.00 3.18
67 68 0.757512 ATGCAGAGCCAGTGATCGAT 59.242 50.000 0.00 0.00 30.37 3.59
68 69 0.103755 GATGCAGAGCCAGTGATCGA 59.896 55.000 0.00 0.00 30.37 3.59
69 70 0.179092 TGATGCAGAGCCAGTGATCG 60.179 55.000 0.00 0.00 30.37 3.69
70 71 2.144730 GATGATGCAGAGCCAGTGATC 58.855 52.381 0.00 0.00 0.00 2.92
194 242 7.952637 GTCTTCGTTGAAGTGAGAAACATATTC 59.047 37.037 6.46 0.00 40.24 1.75
198 246 4.511826 GGTCTTCGTTGAAGTGAGAAACAT 59.488 41.667 6.46 0.00 40.24 2.71
208 257 2.737252 GCACTAAGGGTCTTCGTTGAAG 59.263 50.000 0.09 0.09 40.65 3.02
211 260 1.068474 CGCACTAAGGGTCTTCGTTG 58.932 55.000 0.00 0.00 0.00 4.10
213 262 1.590147 CCGCACTAAGGGTCTTCGT 59.410 57.895 0.00 0.00 0.00 3.85
215 264 1.810030 CGCCGCACTAAGGGTCTTC 60.810 63.158 0.00 0.00 0.00 2.87
235 284 1.234821 GAAAACAGATCACCACCGCA 58.765 50.000 0.00 0.00 0.00 5.69
241 290 4.021102 TGGAGAAGGAAAACAGATCACC 57.979 45.455 0.00 0.00 0.00 4.02
258 307 2.307768 TCGAACCAGCTACCTATGGAG 58.692 52.381 0.00 0.00 39.02 3.86
289 338 9.429359 TCTGAAAAATAAACAAAGAAAAGTGCA 57.571 25.926 0.00 0.00 0.00 4.57
339 388 6.265422 AGTTCGATTCTTTTGGTCCTCATTTT 59.735 34.615 0.00 0.00 0.00 1.82
366 415 2.097036 CCTGCATGGTGTTGATGTCAT 58.903 47.619 0.00 0.00 0.00 3.06
367 416 1.536940 CCTGCATGGTGTTGATGTCA 58.463 50.000 0.00 0.00 0.00 3.58
371 420 0.542467 TTGCCCTGCATGGTGTTGAT 60.542 50.000 9.95 0.00 38.76 2.57
380 429 0.881118 CAACTACGTTTGCCCTGCAT 59.119 50.000 0.00 0.00 38.76 3.96
381 430 0.179043 TCAACTACGTTTGCCCTGCA 60.179 50.000 0.00 0.00 36.47 4.41
382 431 0.237498 GTCAACTACGTTTGCCCTGC 59.763 55.000 0.00 0.00 0.00 4.85
383 432 0.872388 GGTCAACTACGTTTGCCCTG 59.128 55.000 0.00 0.00 0.00 4.45
385 434 1.534163 GAAGGTCAACTACGTTTGCCC 59.466 52.381 0.00 0.00 36.35 5.36
386 435 1.534163 GGAAGGTCAACTACGTTTGCC 59.466 52.381 0.00 0.00 36.35 4.52
387 436 2.032290 GTGGAAGGTCAACTACGTTTGC 60.032 50.000 0.00 0.00 36.35 3.68
388 437 3.247648 CAGTGGAAGGTCAACTACGTTTG 59.752 47.826 0.00 0.00 36.35 2.93
389 438 3.133362 TCAGTGGAAGGTCAACTACGTTT 59.867 43.478 0.00 0.00 36.35 3.60
390 439 2.696707 TCAGTGGAAGGTCAACTACGTT 59.303 45.455 0.00 0.00 38.85 3.99
391 440 2.296471 CTCAGTGGAAGGTCAACTACGT 59.704 50.000 0.00 0.00 0.00 3.57
392 441 2.352814 CCTCAGTGGAAGGTCAACTACG 60.353 54.545 0.00 0.00 38.35 3.51
393 442 2.633481 ACCTCAGTGGAAGGTCAACTAC 59.367 50.000 0.00 0.00 39.71 2.73
394 443 2.972348 ACCTCAGTGGAAGGTCAACTA 58.028 47.619 0.00 0.00 39.71 2.24
395 444 1.807814 ACCTCAGTGGAAGGTCAACT 58.192 50.000 0.00 0.00 39.71 3.16
396 445 2.633481 AGTACCTCAGTGGAAGGTCAAC 59.367 50.000 6.79 2.01 39.71 3.18
397 446 2.972348 AGTACCTCAGTGGAAGGTCAA 58.028 47.619 6.79 0.00 39.71 3.18
398 447 2.696526 AGTACCTCAGTGGAAGGTCA 57.303 50.000 6.79 0.00 39.71 4.02
399 448 2.759535 GGTAGTACCTCAGTGGAAGGTC 59.240 54.545 12.41 0.86 39.71 3.85
400 449 2.817665 GGTAGTACCTCAGTGGAAGGT 58.182 52.381 12.41 8.47 39.71 3.50
411 460 7.613551 TTTCTTCAAAAGAGAGGTAGTACCT 57.386 36.000 22.26 22.26 41.90 3.08
480 529 8.695284 CGGACGAAATTTGTAATTGAATTTTGA 58.305 29.630 19.72 0.00 38.22 2.69
481 530 8.695284 TCGGACGAAATTTGTAATTGAATTTTG 58.305 29.630 15.23 15.23 40.23 2.44
482 531 8.804688 TCGGACGAAATTTGTAATTGAATTTT 57.195 26.923 0.00 2.81 36.04 1.82
483 532 8.804688 TTCGGACGAAATTTGTAATTGAATTT 57.195 26.923 4.47 8.04 37.96 1.82
484 533 8.804688 TTTCGGACGAAATTTGTAATTGAATT 57.195 26.923 15.07 0.00 38.95 2.17
506 555 5.458015 ACCGAGAAATTCCGAACAAATTTC 58.542 37.500 11.49 11.49 46.37 2.17
507 556 5.447624 ACCGAGAAATTCCGAACAAATTT 57.552 34.783 5.64 0.00 38.64 1.82
508 557 6.376177 GTTACCGAGAAATTCCGAACAAATT 58.624 36.000 5.64 0.00 0.00 1.82
509 558 5.106436 GGTTACCGAGAAATTCCGAACAAAT 60.106 40.000 5.64 0.00 0.00 2.32
510 559 4.213906 GGTTACCGAGAAATTCCGAACAAA 59.786 41.667 5.64 0.00 0.00 2.83
511 560 3.747529 GGTTACCGAGAAATTCCGAACAA 59.252 43.478 5.64 0.00 0.00 2.83
512 561 3.328505 GGTTACCGAGAAATTCCGAACA 58.671 45.455 5.64 0.00 0.00 3.18
529 578 3.959535 AATTCTCGGTAACCACGGTTA 57.040 42.857 4.51 4.51 39.31 2.85
530 579 2.845363 AATTCTCGGTAACCACGGTT 57.155 45.000 6.70 6.70 41.65 4.44
531 580 2.691927 GAAATTCTCGGTAACCACGGT 58.308 47.619 0.00 0.00 0.00 4.83
532 581 1.657094 CGAAATTCTCGGTAACCACGG 59.343 52.381 0.00 0.00 44.20 4.94
543 592 2.437716 TGGGCGGGCGAAATTCTC 60.438 61.111 0.00 0.00 0.00 2.87
544 593 2.750237 GTGGGCGGGCGAAATTCT 60.750 61.111 0.00 0.00 0.00 2.40
545 594 4.174129 CGTGGGCGGGCGAAATTC 62.174 66.667 0.00 0.00 0.00 2.17
546 595 4.708386 TCGTGGGCGGGCGAAATT 62.708 61.111 0.00 0.00 38.89 1.82
552 601 1.873270 AAATTTTCTCGTGGGCGGGC 61.873 55.000 0.00 0.00 38.74 6.13
553 602 0.109319 CAAATTTTCTCGTGGGCGGG 60.109 55.000 0.00 0.00 40.60 6.13
554 603 0.732538 GCAAATTTTCTCGTGGGCGG 60.733 55.000 0.00 0.00 38.89 6.13
555 604 0.732538 GGCAAATTTTCTCGTGGGCG 60.733 55.000 0.00 0.00 39.92 6.13
556 605 0.389817 GGGCAAATTTTCTCGTGGGC 60.390 55.000 0.00 0.00 0.00 5.36
557 606 0.965439 TGGGCAAATTTTCTCGTGGG 59.035 50.000 0.00 0.00 0.00 4.61
558 607 3.253230 GAATGGGCAAATTTTCTCGTGG 58.747 45.455 0.00 0.00 0.00 4.94
559 608 2.916716 CGAATGGGCAAATTTTCTCGTG 59.083 45.455 0.00 0.00 0.00 4.35
560 609 2.094752 CCGAATGGGCAAATTTTCTCGT 60.095 45.455 0.00 0.00 0.00 4.18
561 610 2.163412 TCCGAATGGGCAAATTTTCTCG 59.837 45.455 0.00 0.00 35.24 4.04
562 611 3.866883 TCCGAATGGGCAAATTTTCTC 57.133 42.857 0.00 0.00 35.24 2.87
563 612 4.383010 GGATTCCGAATGGGCAAATTTTCT 60.383 41.667 0.00 0.00 35.24 2.52
564 613 3.871006 GGATTCCGAATGGGCAAATTTTC 59.129 43.478 0.00 0.00 35.24 2.29
565 614 3.262915 TGGATTCCGAATGGGCAAATTTT 59.737 39.130 0.00 0.00 35.24 1.82
566 615 2.836981 TGGATTCCGAATGGGCAAATTT 59.163 40.909 0.00 0.00 35.24 1.82
567 616 2.465813 TGGATTCCGAATGGGCAAATT 58.534 42.857 0.00 0.00 35.24 1.82
568 617 2.157640 TGGATTCCGAATGGGCAAAT 57.842 45.000 0.00 0.00 35.24 2.32
569 618 1.930251 TTGGATTCCGAATGGGCAAA 58.070 45.000 0.00 0.00 35.24 3.68
570 619 1.930251 TTTGGATTCCGAATGGGCAA 58.070 45.000 0.84 0.00 35.24 4.52
571 620 1.548269 GTTTTGGATTCCGAATGGGCA 59.452 47.619 6.20 0.00 35.24 5.36
572 621 1.134818 GGTTTTGGATTCCGAATGGGC 60.135 52.381 6.20 0.00 35.24 5.36
573 622 2.456577 AGGTTTTGGATTCCGAATGGG 58.543 47.619 6.20 0.00 35.24 4.00
574 623 3.509575 TCAAGGTTTTGGATTCCGAATGG 59.490 43.478 6.20 0.00 34.97 3.16
575 624 4.782019 TCAAGGTTTTGGATTCCGAATG 57.218 40.909 6.20 2.42 34.97 2.67
576 625 5.016173 TGATCAAGGTTTTGGATTCCGAAT 58.984 37.500 6.20 0.00 34.97 3.34
577 626 4.217550 GTGATCAAGGTTTTGGATTCCGAA 59.782 41.667 0.00 0.84 34.97 4.30
578 627 3.756434 GTGATCAAGGTTTTGGATTCCGA 59.244 43.478 0.00 0.00 34.97 4.55
579 628 3.119495 GGTGATCAAGGTTTTGGATTCCG 60.119 47.826 0.00 0.00 34.97 4.30
580 629 3.831911 TGGTGATCAAGGTTTTGGATTCC 59.168 43.478 0.00 0.00 34.97 3.01
581 630 4.280677 TGTGGTGATCAAGGTTTTGGATTC 59.719 41.667 0.00 0.00 34.97 2.52
582 631 4.222336 TGTGGTGATCAAGGTTTTGGATT 58.778 39.130 0.00 0.00 34.97 3.01
583 632 3.843422 TGTGGTGATCAAGGTTTTGGAT 58.157 40.909 0.00 0.00 34.97 3.41
584 633 3.304911 TGTGGTGATCAAGGTTTTGGA 57.695 42.857 0.00 0.00 34.97 3.53
585 634 3.716601 GTTGTGGTGATCAAGGTTTTGG 58.283 45.455 0.00 0.00 34.97 3.28
586 635 3.371168 CGTTGTGGTGATCAAGGTTTTG 58.629 45.455 0.00 0.00 35.57 2.44
587 636 2.223711 GCGTTGTGGTGATCAAGGTTTT 60.224 45.455 0.00 0.00 34.51 2.43
588 637 1.336755 GCGTTGTGGTGATCAAGGTTT 59.663 47.619 0.00 0.00 34.51 3.27
589 638 0.951558 GCGTTGTGGTGATCAAGGTT 59.048 50.000 0.00 0.00 34.51 3.50
590 639 0.889186 GGCGTTGTGGTGATCAAGGT 60.889 55.000 0.00 0.00 34.51 3.50
591 640 0.888736 TGGCGTTGTGGTGATCAAGG 60.889 55.000 0.00 0.00 34.94 3.61
592 641 1.135603 CATGGCGTTGTGGTGATCAAG 60.136 52.381 0.00 0.00 0.00 3.02
593 642 0.880441 CATGGCGTTGTGGTGATCAA 59.120 50.000 0.00 0.00 0.00 2.57
594 643 0.036022 TCATGGCGTTGTGGTGATCA 59.964 50.000 0.00 0.00 0.00 2.92
595 644 0.447801 GTCATGGCGTTGTGGTGATC 59.552 55.000 0.00 0.00 0.00 2.92
596 645 0.250684 TGTCATGGCGTTGTGGTGAT 60.251 50.000 0.00 0.00 0.00 3.06
597 646 0.884259 CTGTCATGGCGTTGTGGTGA 60.884 55.000 0.00 0.00 0.00 4.02
598 647 1.575922 CTGTCATGGCGTTGTGGTG 59.424 57.895 0.00 0.00 0.00 4.17
599 648 1.600636 CCTGTCATGGCGTTGTGGT 60.601 57.895 0.00 0.00 0.00 4.16
600 649 1.172180 AACCTGTCATGGCGTTGTGG 61.172 55.000 0.00 0.00 0.00 4.17
601 650 0.040157 CAACCTGTCATGGCGTTGTG 60.040 55.000 9.21 0.00 32.73 3.33
602 651 0.465460 ACAACCTGTCATGGCGTTGT 60.465 50.000 15.32 15.32 42.91 3.32
603 652 0.040157 CACAACCTGTCATGGCGTTG 60.040 55.000 14.22 14.22 41.06 4.10
621 670 1.550327 TGTTGTTCAAGTGGCCAACA 58.450 45.000 7.24 4.68 43.39 3.33
622 671 2.267426 GTTGTTGTTCAAGTGGCCAAC 58.733 47.619 7.24 1.14 36.66 3.77
623 672 1.205893 GGTTGTTGTTCAAGTGGCCAA 59.794 47.619 7.24 0.00 36.66 4.52
624 673 0.820871 GGTTGTTGTTCAAGTGGCCA 59.179 50.000 0.00 0.00 36.66 5.36
625 674 0.104120 GGGTTGTTGTTCAAGTGGCC 59.896 55.000 0.00 0.00 36.66 5.36
626 675 1.111277 AGGGTTGTTGTTCAAGTGGC 58.889 50.000 0.00 0.00 36.66 5.01
627 676 2.374184 TCAGGGTTGTTGTTCAAGTGG 58.626 47.619 0.00 0.00 36.66 4.00
628 677 3.694072 TCTTCAGGGTTGTTGTTCAAGTG 59.306 43.478 0.00 0.00 36.66 3.16
629 678 3.963129 TCTTCAGGGTTGTTGTTCAAGT 58.037 40.909 0.00 0.00 36.66 3.16
630 679 5.334105 CGTATCTTCAGGGTTGTTGTTCAAG 60.334 44.000 0.00 0.00 36.66 3.02
631 680 4.513692 CGTATCTTCAGGGTTGTTGTTCAA 59.486 41.667 0.00 0.00 0.00 2.69
632 681 4.062293 CGTATCTTCAGGGTTGTTGTTCA 58.938 43.478 0.00 0.00 0.00 3.18
633 682 4.312443 TCGTATCTTCAGGGTTGTTGTTC 58.688 43.478 0.00 0.00 0.00 3.18
634 683 4.345859 TCGTATCTTCAGGGTTGTTGTT 57.654 40.909 0.00 0.00 0.00 2.83
635 684 4.553330 ATCGTATCTTCAGGGTTGTTGT 57.447 40.909 0.00 0.00 0.00 3.32
636 685 5.411361 TCAAATCGTATCTTCAGGGTTGTTG 59.589 40.000 0.00 0.00 0.00 3.33
637 686 5.411669 GTCAAATCGTATCTTCAGGGTTGTT 59.588 40.000 0.00 0.00 0.00 2.83
638 687 4.935808 GTCAAATCGTATCTTCAGGGTTGT 59.064 41.667 0.00 0.00 0.00 3.32
639 688 4.935205 TGTCAAATCGTATCTTCAGGGTTG 59.065 41.667 0.00 0.00 0.00 3.77
640 689 5.160607 TGTCAAATCGTATCTTCAGGGTT 57.839 39.130 0.00 0.00 0.00 4.11
641 690 4.819105 TGTCAAATCGTATCTTCAGGGT 57.181 40.909 0.00 0.00 0.00 4.34
642 691 5.817296 TCAATGTCAAATCGTATCTTCAGGG 59.183 40.000 0.00 0.00 0.00 4.45
643 692 6.758416 TCTCAATGTCAAATCGTATCTTCAGG 59.242 38.462 0.00 0.00 0.00 3.86
644 693 7.761651 TCTCAATGTCAAATCGTATCTTCAG 57.238 36.000 0.00 0.00 0.00 3.02
645 694 7.602265 TGTTCTCAATGTCAAATCGTATCTTCA 59.398 33.333 0.00 0.00 0.00 3.02
646 695 7.900352 GTGTTCTCAATGTCAAATCGTATCTTC 59.100 37.037 0.00 0.00 0.00 2.87
647 696 7.387673 TGTGTTCTCAATGTCAAATCGTATCTT 59.612 33.333 0.00 0.00 0.00 2.40
648 697 6.873605 TGTGTTCTCAATGTCAAATCGTATCT 59.126 34.615 0.00 0.00 0.00 1.98
649 698 7.060600 TGTGTTCTCAATGTCAAATCGTATC 57.939 36.000 0.00 0.00 0.00 2.24
650 699 7.615582 ATGTGTTCTCAATGTCAAATCGTAT 57.384 32.000 0.00 0.00 0.00 3.06
651 700 7.817478 AGTATGTGTTCTCAATGTCAAATCGTA 59.183 33.333 0.00 0.00 0.00 3.43
652 701 5.947228 ATGTGTTCTCAATGTCAAATCGT 57.053 34.783 0.00 0.00 0.00 3.73
653 702 7.063898 AGAGTATGTGTTCTCAATGTCAAATCG 59.936 37.037 0.00 0.00 33.63 3.34
693 742 7.954788 AAAAACAAAACACTGCTCTGTTTAA 57.045 28.000 11.29 0.00 42.36 1.52
728 802 1.226547 AACCACAACGCAACGCTTG 60.227 52.632 0.00 0.00 0.00 4.01
793 871 2.463589 TTTCGGCAGTAGGTGGGCTG 62.464 60.000 0.00 0.00 35.93 4.85
991 3416 4.899239 CTGGTCCATCGCTCGCCC 62.899 72.222 0.00 0.00 0.00 6.13
1260 3725 3.295304 CTCCATGTGCCGACGGTCA 62.295 63.158 16.73 15.21 0.00 4.02
1533 4101 5.856455 CACATGTTAACAAATTCGGGAAGAC 59.144 40.000 13.23 0.00 0.00 3.01
1556 4168 3.546724 TCTTTGTGGTCAAATTCCGACA 58.453 40.909 9.47 0.00 41.77 4.35
1592 4208 4.214119 CGATCAAGAAGCCAAAGAAACAGA 59.786 41.667 0.00 0.00 0.00 3.41
1593 4209 4.470462 CGATCAAGAAGCCAAAGAAACAG 58.530 43.478 0.00 0.00 0.00 3.16
1603 4228 3.314635 AGATCAAATGCGATCAAGAAGCC 59.685 43.478 0.00 0.00 43.61 4.35
1629 4293 0.321919 GGGATGCTGCAGTTGAGTCA 60.322 55.000 16.64 3.54 0.00 3.41
1948 4625 1.630878 AGAAGTTGGGGACATGGAGAC 59.369 52.381 0.00 0.00 42.32 3.36
1972 4659 2.160205 TCCAGACAGTACCGAAGACAG 58.840 52.381 0.00 0.00 0.00 3.51
2007 4788 3.005554 TGAAGCAGATTAGCAGCAGTTC 58.994 45.455 0.00 0.00 36.85 3.01
2049 4997 2.565841 ACTGAAGCTTGAGACCACAAC 58.434 47.619 20.38 0.00 0.00 3.32
2059 5007 6.150140 AGCAAATTAGTCCTAACTGAAGCTTG 59.850 38.462 2.10 0.00 36.92 4.01
2090 5038 1.134461 AGCAGATTAGCAGCAGTCCTG 60.134 52.381 0.00 0.00 44.67 3.86
2248 5518 7.862372 CACAATGCAAATACAACAGTTCTACTT 59.138 33.333 0.00 0.00 0.00 2.24
2250 5520 6.582295 CCACAATGCAAATACAACAGTTCTAC 59.418 38.462 0.00 0.00 0.00 2.59
2329 5613 3.498777 GCTTTACAAGTCCCAAGAGTGTC 59.501 47.826 0.00 0.00 0.00 3.67
2399 5720 9.691362 TTCTTTCTGAATTACAATTGGCTAAAC 57.309 29.630 10.83 1.11 0.00 2.01
2444 5765 5.932883 TGTGCATATTCCGTGTAGTGTTTTA 59.067 36.000 0.00 0.00 0.00 1.52
2456 5777 5.112220 AGCAATGTAATGTGCATATTCCG 57.888 39.130 12.36 0.00 43.42 4.30
2461 5782 5.418524 ACCTGAAAGCAATGTAATGTGCATA 59.581 36.000 0.00 0.00 43.42 3.14
2505 5841 7.081526 ACTCACAATAATCTGAAAGCATGTC 57.918 36.000 0.00 0.00 0.00 3.06
2506 5842 7.458409 AACTCACAATAATCTGAAAGCATGT 57.542 32.000 0.00 0.00 0.00 3.21
2509 5845 9.230122 TCATAAACTCACAATAATCTGAAAGCA 57.770 29.630 0.00 0.00 0.00 3.91
2510 5846 9.495754 GTCATAAACTCACAATAATCTGAAAGC 57.504 33.333 0.00 0.00 0.00 3.51
2532 5868 7.014615 GGAAAAGGTTAGGCATAATCATGTCAT 59.985 37.037 3.95 0.00 39.36 3.06
2556 5892 0.487325 TCAGGGAACAGTGAGGAGGA 59.513 55.000 0.00 0.00 0.00 3.71
2603 7292 3.744660 ACAGGTTCAAGTGACAAGATCC 58.255 45.455 0.00 0.00 0.00 3.36
2792 7489 0.533032 TGGATTCACATGCCGTCGTA 59.467 50.000 0.00 0.00 0.00 3.43
2825 7555 3.778629 GTCCCTGAACCCCTGTCTAATAA 59.221 47.826 0.00 0.00 0.00 1.40
2826 7556 3.381335 GTCCCTGAACCCCTGTCTAATA 58.619 50.000 0.00 0.00 0.00 0.98
2827 7557 2.197465 GTCCCTGAACCCCTGTCTAAT 58.803 52.381 0.00 0.00 0.00 1.73
3006 7741 0.393132 TGGCAACGTTGAAGTGGTGA 60.393 50.000 31.62 2.52 42.51 4.02
3051 7786 4.424626 AGTGCTCAACTCATATGTGTACG 58.575 43.478 10.65 6.01 31.64 3.67
3139 7874 1.221414 ACGCAGCAAGTTGAGAGTTC 58.779 50.000 7.16 0.00 0.00 3.01
3141 7876 1.668419 AAACGCAGCAAGTTGAGAGT 58.332 45.000 7.16 3.19 31.43 3.24
3157 7892 0.109597 CTGCCGATGCACAGGAAAAC 60.110 55.000 12.99 0.00 44.23 2.43
3179 7914 2.290008 TGGGACTGCTTGCGATCTAAAA 60.290 45.455 0.00 0.00 0.00 1.52
3199 7934 3.181493 ACTGCAAACTCTTGTCAGCTTTG 60.181 43.478 0.00 0.00 38.86 2.77
3202 7937 2.338577 ACTGCAAACTCTTGTCAGCT 57.661 45.000 0.00 0.00 38.86 4.24
3269 8005 8.958119 ATGTATGAACACTTACCGAAATACAT 57.042 30.769 0.00 0.00 38.78 2.29
3305 8041 9.851043 GAATGAGCACTTCTTAAATTATACGAC 57.149 33.333 0.00 0.00 0.00 4.34
3306 8042 9.594478 TGAATGAGCACTTCTTAAATTATACGA 57.406 29.630 0.00 0.00 0.00 3.43
3366 8308 8.491331 AACACTTTAAAATTGCACAACATCTT 57.509 26.923 0.00 0.00 0.00 2.40
3367 8309 7.763528 TGAACACTTTAAAATTGCACAACATCT 59.236 29.630 0.00 0.00 0.00 2.90
3420 8364 3.055385 ACGTAAAATGCCTGAGCCTTCTA 60.055 43.478 0.00 0.00 38.69 2.10
3427 8371 4.749245 ACAAGAACGTAAAATGCCTGAG 57.251 40.909 0.00 0.00 0.00 3.35
3440 8384 9.207042 GAACACTTTTAGAAAACTACAAGAACG 57.793 33.333 9.22 0.00 0.00 3.95
3461 8405 8.718734 AGAGGATTATTTTTAAGTCGTGAACAC 58.281 33.333 0.00 0.00 0.00 3.32
3504 8448 6.423042 CACGTAAATGTGTGTAATGTGTGAA 58.577 36.000 0.00 0.00 35.12 3.18
3514 8458 0.249953 TCCCGCACGTAAATGTGTGT 60.250 50.000 13.27 0.00 46.34 3.72
3516 8460 0.319083 TCTCCCGCACGTAAATGTGT 59.681 50.000 4.36 0.00 41.94 3.72
3517 8461 1.393539 CTTCTCCCGCACGTAAATGTG 59.606 52.381 0.00 0.00 42.81 3.21
3518 8462 1.674817 CCTTCTCCCGCACGTAAATGT 60.675 52.381 0.00 0.00 0.00 2.71
3519 8463 1.006832 CCTTCTCCCGCACGTAAATG 58.993 55.000 0.00 0.00 0.00 2.32
3520 8464 0.107848 CCCTTCTCCCGCACGTAAAT 60.108 55.000 0.00 0.00 0.00 1.40
3521 8465 1.294138 CCCTTCTCCCGCACGTAAA 59.706 57.895 0.00 0.00 0.00 2.01
3522 8466 2.975536 CCCTTCTCCCGCACGTAA 59.024 61.111 0.00 0.00 0.00 3.18
3523 8467 3.766691 GCCCTTCTCCCGCACGTA 61.767 66.667 0.00 0.00 0.00 3.57
3532 8476 4.344865 TGGTTGGCCGCCCTTCTC 62.345 66.667 7.03 0.00 37.67 2.87
3533 8477 4.351054 CTGGTTGGCCGCCCTTCT 62.351 66.667 7.03 0.00 37.67 2.85
3543 8487 3.384532 GGTGGCCATGCTGGTTGG 61.385 66.667 9.72 0.00 40.46 3.77
3544 8488 2.283388 AGGTGGCCATGCTGGTTG 60.283 61.111 9.72 0.00 40.46 3.77
3545 8489 2.283388 CAGGTGGCCATGCTGGTT 60.283 61.111 9.72 0.00 40.46 3.67
3546 8490 3.259314 TCAGGTGGCCATGCTGGT 61.259 61.111 9.72 0.00 40.46 4.00
3547 8491 2.753043 GTCAGGTGGCCATGCTGG 60.753 66.667 9.72 0.00 41.55 4.85
3548 8492 3.129502 CGTCAGGTGGCCATGCTG 61.130 66.667 9.72 0.00 0.00 4.41
3551 8495 2.438975 ATGCGTCAGGTGGCCATG 60.439 61.111 9.72 3.78 0.00 3.66
3552 8496 2.438975 CATGCGTCAGGTGGCCAT 60.439 61.111 9.72 0.00 0.00 4.40
3553 8497 3.490031 AACATGCGTCAGGTGGCCA 62.490 57.895 0.00 0.00 0.00 5.36
3554 8498 2.672996 AACATGCGTCAGGTGGCC 60.673 61.111 0.00 0.00 0.00 5.36
3555 8499 2.562912 CAACATGCGTCAGGTGGC 59.437 61.111 0.00 0.00 0.00 5.01
3556 8500 1.172180 AACCAACATGCGTCAGGTGG 61.172 55.000 5.79 5.79 34.62 4.61
3557 8501 0.040157 CAACCAACATGCGTCAGGTG 60.040 55.000 0.00 0.00 34.62 4.00
3558 8502 1.172180 CCAACCAACATGCGTCAGGT 61.172 55.000 0.00 0.00 35.57 4.00
3559 8503 1.580942 CCAACCAACATGCGTCAGG 59.419 57.895 0.00 0.00 0.00 3.86
3560 8504 1.081242 GCCAACCAACATGCGTCAG 60.081 57.895 0.00 0.00 0.00 3.51
3561 8505 2.560119 GGCCAACCAACATGCGTCA 61.560 57.895 0.00 0.00 35.26 4.35
3562 8506 2.258286 GGCCAACCAACATGCGTC 59.742 61.111 0.00 0.00 35.26 5.19
3563 8507 3.669344 CGGCCAACCAACATGCGT 61.669 61.111 2.24 0.00 34.57 5.24
3564 8508 3.669344 ACGGCCAACCAACATGCG 61.669 61.111 2.24 0.00 34.57 4.73
3565 8509 2.049248 CACGGCCAACCAACATGC 60.049 61.111 2.24 0.00 34.57 4.06
3566 8510 2.650196 CCACGGCCAACCAACATG 59.350 61.111 2.24 0.00 34.57 3.21
3567 8511 3.302344 GCCACGGCCAACCAACAT 61.302 61.111 2.24 0.00 34.57 2.71
3573 8517 2.975799 TTTCTCGCCACGGCCAAC 60.976 61.111 2.24 0.00 37.98 3.77
3574 8518 2.951475 AAGTTTCTCGCCACGGCCAA 62.951 55.000 2.24 0.00 37.98 4.52
3575 8519 2.951475 AAAGTTTCTCGCCACGGCCA 62.951 55.000 2.24 0.00 37.98 5.36
3576 8520 1.792118 AAAAGTTTCTCGCCACGGCC 61.792 55.000 1.63 0.00 37.98 6.13
3577 8521 0.030235 AAAAAGTTTCTCGCCACGGC 59.970 50.000 0.00 0.00 37.85 5.68
3578 8522 3.824414 ATAAAAAGTTTCTCGCCACGG 57.176 42.857 0.00 0.00 0.00 4.94
3579 8523 7.790861 AAAATATAAAAAGTTTCTCGCCACG 57.209 32.000 0.00 0.00 0.00 4.94
3663 8607 9.413734 CCCACTTCCATCTTCTAAAAATAATCT 57.586 33.333 0.00 0.00 0.00 2.40
3664 8608 9.408648 TCCCACTTCCATCTTCTAAAAATAATC 57.591 33.333 0.00 0.00 0.00 1.75
3665 8609 9.190317 GTCCCACTTCCATCTTCTAAAAATAAT 57.810 33.333 0.00 0.00 0.00 1.28
3666 8610 8.390921 AGTCCCACTTCCATCTTCTAAAAATAA 58.609 33.333 0.00 0.00 0.00 1.40
3667 8611 7.928873 AGTCCCACTTCCATCTTCTAAAAATA 58.071 34.615 0.00 0.00 0.00 1.40
3668 8612 6.794534 AGTCCCACTTCCATCTTCTAAAAAT 58.205 36.000 0.00 0.00 0.00 1.82
3669 8613 6.200878 AGTCCCACTTCCATCTTCTAAAAA 57.799 37.500 0.00 0.00 0.00 1.94
3670 8614 5.843019 AGTCCCACTTCCATCTTCTAAAA 57.157 39.130 0.00 0.00 0.00 1.52
3671 8615 5.843019 AAGTCCCACTTCCATCTTCTAAA 57.157 39.130 0.00 0.00 31.77 1.85
3672 8616 5.843019 AAAGTCCCACTTCCATCTTCTAA 57.157 39.130 0.00 0.00 37.47 2.10
3673 8617 5.843019 AAAAGTCCCACTTCCATCTTCTA 57.157 39.130 0.00 0.00 37.47 2.10
3674 8618 4.731313 AAAAGTCCCACTTCCATCTTCT 57.269 40.909 0.00 0.00 37.47 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.