Multiple sequence alignment - TraesCS7D01G112600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G112600 chr7D 100.000 2330 0 0 1 2330 68936142 68933813 0.000000e+00 4303.0
1 TraesCS7D01G112600 chr7D 98.481 856 10 3 797 1650 66484581 66485435 0.000000e+00 1506.0
2 TraesCS7D01G112600 chr7D 91.147 689 48 4 1651 2330 214354656 214355340 0.000000e+00 922.0
3 TraesCS7D01G112600 chr7D 97.738 442 9 1 1 441 388007817 388008258 0.000000e+00 760.0
4 TraesCS7D01G112600 chr7D 89.438 445 35 8 974 1416 68806005 68805571 3.380000e-153 551.0
5 TraesCS7D01G112600 chr7D 85.316 538 41 13 975 1495 66513486 66514002 2.650000e-144 521.0
6 TraesCS7D01G112600 chr7D 86.526 475 34 20 797 1261 68924352 68923898 1.610000e-136 496.0
7 TraesCS7D01G112600 chr7D 91.892 148 12 0 441 588 593500070 593499923 8.440000e-50 207.0
8 TraesCS7D01G112600 chr7D 100.000 28 0 0 690 717 66484460 66484487 4.000000e-03 52.8
9 TraesCS7D01G112600 chr7A 88.024 1002 57 19 610 1549 74611207 74610207 0.000000e+00 1127.0
10 TraesCS7D01G112600 chr7A 86.797 871 41 23 797 1650 71110064 71110877 0.000000e+00 904.0
11 TraesCS7D01G112600 chr7A 88.942 624 55 6 1703 2316 171285287 171285906 0.000000e+00 758.0
12 TraesCS7D01G112600 chr7A 87.846 650 46 20 798 1439 70894008 70894632 0.000000e+00 732.0
13 TraesCS7D01G112600 chr7A 88.008 492 43 10 845 1334 74596621 74596144 3.360000e-158 568.0
14 TraesCS7D01G112600 chr7A 100.000 32 0 0 668 699 71109972 71110003 2.500000e-05 60.2
15 TraesCS7D01G112600 chr3D 93.813 695 29 4 1649 2330 38911961 38911268 0.000000e+00 1033.0
16 TraesCS7D01G112600 chr3D 92.086 695 36 7 1645 2330 387353744 387353060 0.000000e+00 961.0
17 TraesCS7D01G112600 chr3D 97.738 442 9 1 1 441 313329018 313329459 0.000000e+00 760.0
18 TraesCS7D01G112600 chr3D 97.517 443 9 2 1 441 501288317 501287875 0.000000e+00 756.0
19 TraesCS7D01G112600 chrUn 91.014 690 48 7 1651 2330 115499516 115498831 0.000000e+00 918.0
20 TraesCS7D01G112600 chr6D 91.292 689 25 8 1651 2330 89363048 89362386 0.000000e+00 907.0
21 TraesCS7D01G112600 chr6D 97.738 442 9 1 1 441 391899252 391899693 0.000000e+00 760.0
22 TraesCS7D01G112600 chr3A 90.043 693 53 8 1650 2330 594499918 594500606 0.000000e+00 883.0
23 TraesCS7D01G112600 chr7B 88.649 740 42 15 709 1413 7727584 7728316 0.000000e+00 863.0
24 TraesCS7D01G112600 chr7B 90.357 560 25 6 797 1328 10241755 10241197 0.000000e+00 708.0
25 TraesCS7D01G112600 chr7B 90.769 195 14 4 1459 1650 7728313 7728506 8.260000e-65 257.0
26 TraesCS7D01G112600 chr7B 95.349 43 2 0 675 717 7725883 7725925 4.150000e-08 69.4
27 TraesCS7D01G112600 chr3B 90.046 653 51 7 1651 2292 771724795 771724146 0.000000e+00 833.0
28 TraesCS7D01G112600 chr2D 89.405 689 29 16 1651 2330 604689249 604688596 0.000000e+00 828.0
29 TraesCS7D01G112600 chr2D 97.959 441 9 0 1 441 222733372 222733812 0.000000e+00 765.0
30 TraesCS7D01G112600 chr2D 97.738 442 9 1 1 441 209055436 209054995 0.000000e+00 760.0
31 TraesCS7D01G112600 chr2D 97.738 442 8 2 1 441 419593489 419593929 0.000000e+00 760.0
32 TraesCS7D01G112600 chr2D 91.892 148 12 0 441 588 527783154 527783301 8.440000e-50 207.0
33 TraesCS7D01G112600 chr2D 91.892 148 12 0 441 588 527803347 527803494 8.440000e-50 207.0
34 TraesCS7D01G112600 chr5D 98.186 441 7 1 1 441 198882504 198882943 0.000000e+00 769.0
35 TraesCS7D01G112600 chr5D 97.511 442 9 2 1 441 109796476 109796916 0.000000e+00 754.0
36 TraesCS7D01G112600 chr5D 81.349 697 108 14 1650 2330 411231394 411230704 4.380000e-152 547.0
37 TraesCS7D01G112600 chr6A 89.864 513 35 6 1830 2330 563166504 563167011 0.000000e+00 643.0
38 TraesCS7D01G112600 chr1D 81.625 849 88 41 716 1549 486922205 486923000 1.950000e-180 641.0
39 TraesCS7D01G112600 chr1D 86.690 571 71 4 1648 2215 404995406 404994838 1.520000e-176 628.0
40 TraesCS7D01G112600 chr4D 82.493 337 52 5 1875 2208 311218105 311217773 2.930000e-74 289.0
41 TraesCS7D01G112600 chr2A 90.286 175 10 3 436 604 632472707 632472534 3.010000e-54 222.0
42 TraesCS7D01G112600 chr4A 92.667 150 11 0 439 588 733173521 733173372 1.400000e-52 217.0
43 TraesCS7D01G112600 chr4A 92.000 150 12 0 439 588 733041606 733041457 6.520000e-51 211.0
44 TraesCS7D01G112600 chr4A 92.000 150 12 0 439 588 733100899 733100750 6.520000e-51 211.0
45 TraesCS7D01G112600 chr4A 92.000 150 12 0 439 588 733224114 733223965 6.520000e-51 211.0
46 TraesCS7D01G112600 chr4A 91.333 150 13 0 439 588 733199324 733199175 3.030000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G112600 chr7D 68933813 68936142 2329 True 4303.000000 4303 100.0000 1 2330 1 chr7D.!!$R3 2329
1 TraesCS7D01G112600 chr7D 214354656 214355340 684 False 922.000000 922 91.1470 1651 2330 1 chr7D.!!$F2 679
2 TraesCS7D01G112600 chr7D 66484460 66485435 975 False 779.400000 1506 99.2405 690 1650 2 chr7D.!!$F4 960
3 TraesCS7D01G112600 chr7D 66513486 66514002 516 False 521.000000 521 85.3160 975 1495 1 chr7D.!!$F1 520
4 TraesCS7D01G112600 chr7A 74610207 74611207 1000 True 1127.000000 1127 88.0240 610 1549 1 chr7A.!!$R2 939
5 TraesCS7D01G112600 chr7A 171285287 171285906 619 False 758.000000 758 88.9420 1703 2316 1 chr7A.!!$F2 613
6 TraesCS7D01G112600 chr7A 70894008 70894632 624 False 732.000000 732 87.8460 798 1439 1 chr7A.!!$F1 641
7 TraesCS7D01G112600 chr7A 71109972 71110877 905 False 482.100000 904 93.3985 668 1650 2 chr7A.!!$F3 982
8 TraesCS7D01G112600 chr3D 38911268 38911961 693 True 1033.000000 1033 93.8130 1649 2330 1 chr3D.!!$R1 681
9 TraesCS7D01G112600 chr3D 387353060 387353744 684 True 961.000000 961 92.0860 1645 2330 1 chr3D.!!$R2 685
10 TraesCS7D01G112600 chrUn 115498831 115499516 685 True 918.000000 918 91.0140 1651 2330 1 chrUn.!!$R1 679
11 TraesCS7D01G112600 chr6D 89362386 89363048 662 True 907.000000 907 91.2920 1651 2330 1 chr6D.!!$R1 679
12 TraesCS7D01G112600 chr3A 594499918 594500606 688 False 883.000000 883 90.0430 1650 2330 1 chr3A.!!$F1 680
13 TraesCS7D01G112600 chr7B 10241197 10241755 558 True 708.000000 708 90.3570 797 1328 1 chr7B.!!$R1 531
14 TraesCS7D01G112600 chr7B 7725883 7728506 2623 False 396.466667 863 91.5890 675 1650 3 chr7B.!!$F1 975
15 TraesCS7D01G112600 chr3B 771724146 771724795 649 True 833.000000 833 90.0460 1651 2292 1 chr3B.!!$R1 641
16 TraesCS7D01G112600 chr2D 604688596 604689249 653 True 828.000000 828 89.4050 1651 2330 1 chr2D.!!$R2 679
17 TraesCS7D01G112600 chr5D 411230704 411231394 690 True 547.000000 547 81.3490 1650 2330 1 chr5D.!!$R1 680
18 TraesCS7D01G112600 chr6A 563166504 563167011 507 False 643.000000 643 89.8640 1830 2330 1 chr6A.!!$F1 500
19 TraesCS7D01G112600 chr1D 486922205 486923000 795 False 641.000000 641 81.6250 716 1549 1 chr1D.!!$F1 833
20 TraesCS7D01G112600 chr1D 404994838 404995406 568 True 628.000000 628 86.6900 1648 2215 1 chr1D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.038744 AGGTAGTTCGAAGTCCCGGA 59.961 55.0 9.2 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 3292 0.309302 CGATCAGGACTACAGGCTCG 59.691 60.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.760181 GATACCGACGATCGAATCTCG 58.240 52.381 24.34 19.57 43.74 4.04
21 22 0.863799 TACCGACGATCGAATCTCGG 59.136 55.000 31.43 31.43 46.23 4.63
22 23 1.082038 CCGACGATCGAATCTCGGG 60.082 63.158 27.86 14.86 43.74 5.14
23 24 1.726322 CGACGATCGAATCTCGGGC 60.726 63.158 24.34 2.72 43.74 6.13
24 25 1.359117 GACGATCGAATCTCGGGCA 59.641 57.895 24.34 0.00 40.88 5.36
25 26 0.248907 GACGATCGAATCTCGGGCAA 60.249 55.000 24.34 0.00 40.88 4.52
26 27 0.249073 ACGATCGAATCTCGGGCAAG 60.249 55.000 24.34 0.00 40.88 4.01
27 28 0.249073 CGATCGAATCTCGGGCAAGT 60.249 55.000 10.26 0.00 40.88 3.16
28 29 1.001706 CGATCGAATCTCGGGCAAGTA 60.002 52.381 10.26 0.00 40.88 2.24
29 30 2.543031 CGATCGAATCTCGGGCAAGTAA 60.543 50.000 10.26 0.00 40.88 2.24
30 31 2.288961 TCGAATCTCGGGCAAGTAAC 57.711 50.000 0.00 0.00 40.88 2.50
31 32 1.546923 TCGAATCTCGGGCAAGTAACA 59.453 47.619 0.00 0.00 40.88 2.41
32 33 2.167693 TCGAATCTCGGGCAAGTAACAT 59.832 45.455 0.00 0.00 40.88 2.71
33 34 3.382227 TCGAATCTCGGGCAAGTAACATA 59.618 43.478 0.00 0.00 40.88 2.29
34 35 3.489785 CGAATCTCGGGCAAGTAACATAC 59.510 47.826 0.00 0.00 36.00 2.39
35 36 2.973694 TCTCGGGCAAGTAACATACC 57.026 50.000 0.00 0.00 0.00 2.73
36 37 1.135527 TCTCGGGCAAGTAACATACCG 59.864 52.381 0.00 0.00 42.45 4.02
37 38 1.135527 CTCGGGCAAGTAACATACCGA 59.864 52.381 0.00 0.00 46.85 4.69
38 39 1.758280 TCGGGCAAGTAACATACCGAT 59.242 47.619 0.00 0.00 44.53 4.18
39 40 1.864711 CGGGCAAGTAACATACCGATG 59.135 52.381 0.00 0.00 43.69 3.84
40 41 2.482316 CGGGCAAGTAACATACCGATGA 60.482 50.000 0.00 0.00 43.69 2.92
41 42 2.870411 GGGCAAGTAACATACCGATGAC 59.130 50.000 0.00 0.00 36.48 3.06
42 43 3.527533 GGCAAGTAACATACCGATGACA 58.472 45.455 0.00 0.00 36.48 3.58
43 44 3.936453 GGCAAGTAACATACCGATGACAA 59.064 43.478 0.00 0.00 36.48 3.18
44 45 4.393680 GGCAAGTAACATACCGATGACAAA 59.606 41.667 0.00 0.00 36.48 2.83
45 46 5.447279 GGCAAGTAACATACCGATGACAAAG 60.447 44.000 0.00 0.00 36.48 2.77
46 47 5.447279 GCAAGTAACATACCGATGACAAAGG 60.447 44.000 0.00 0.00 36.48 3.11
47 48 4.766375 AGTAACATACCGATGACAAAGGG 58.234 43.478 4.83 0.00 36.48 3.95
48 49 3.992943 AACATACCGATGACAAAGGGA 57.007 42.857 4.83 0.00 36.48 4.20
49 50 3.992943 ACATACCGATGACAAAGGGAA 57.007 42.857 4.83 0.00 36.48 3.97
50 51 3.606687 ACATACCGATGACAAAGGGAAC 58.393 45.455 4.83 0.00 36.48 3.62
51 52 3.008594 ACATACCGATGACAAAGGGAACA 59.991 43.478 4.83 0.00 36.48 3.18
52 53 2.649531 ACCGATGACAAAGGGAACAA 57.350 45.000 4.83 0.00 0.00 2.83
53 54 2.227194 ACCGATGACAAAGGGAACAAC 58.773 47.619 4.83 0.00 0.00 3.32
54 55 1.196808 CCGATGACAAAGGGAACAACG 59.803 52.381 0.00 0.00 0.00 4.10
55 56 1.871039 CGATGACAAAGGGAACAACGT 59.129 47.619 0.00 0.00 0.00 3.99
56 57 3.061322 CGATGACAAAGGGAACAACGTA 58.939 45.455 0.00 0.00 0.00 3.57
57 58 3.682858 CGATGACAAAGGGAACAACGTAT 59.317 43.478 0.00 0.00 0.00 3.06
58 59 4.435518 CGATGACAAAGGGAACAACGTATG 60.436 45.833 0.00 0.00 0.00 2.39
59 60 3.811083 TGACAAAGGGAACAACGTATGT 58.189 40.909 0.00 0.00 46.82 2.29
72 73 4.752661 AACGTATGTTGTTATGCGGTTT 57.247 36.364 0.00 0.00 39.90 3.27
73 74 4.073169 ACGTATGTTGTTATGCGGTTTG 57.927 40.909 0.00 0.00 39.90 2.93
74 75 3.747010 ACGTATGTTGTTATGCGGTTTGA 59.253 39.130 0.00 0.00 39.90 2.69
75 76 4.085884 CGTATGTTGTTATGCGGTTTGAC 58.914 43.478 0.00 0.00 33.41 3.18
76 77 4.377533 CGTATGTTGTTATGCGGTTTGACA 60.378 41.667 0.00 0.00 33.41 3.58
77 78 3.617540 TGTTGTTATGCGGTTTGACAG 57.382 42.857 0.00 0.00 0.00 3.51
78 79 3.206964 TGTTGTTATGCGGTTTGACAGA 58.793 40.909 0.00 0.00 0.00 3.41
79 80 3.818210 TGTTGTTATGCGGTTTGACAGAT 59.182 39.130 0.00 0.00 0.00 2.90
80 81 4.998033 TGTTGTTATGCGGTTTGACAGATA 59.002 37.500 0.00 0.00 0.00 1.98
81 82 5.470437 TGTTGTTATGCGGTTTGACAGATAA 59.530 36.000 0.00 0.00 0.00 1.75
82 83 6.017026 TGTTGTTATGCGGTTTGACAGATAAA 60.017 34.615 0.00 0.00 0.00 1.40
83 84 6.176975 TGTTATGCGGTTTGACAGATAAAG 57.823 37.500 0.00 0.00 0.00 1.85
84 85 5.935206 TGTTATGCGGTTTGACAGATAAAGA 59.065 36.000 0.00 0.00 0.00 2.52
85 86 6.597672 TGTTATGCGGTTTGACAGATAAAGAT 59.402 34.615 0.00 0.00 0.00 2.40
86 87 5.741388 ATGCGGTTTGACAGATAAAGATC 57.259 39.130 0.00 0.00 0.00 2.75
87 88 4.832248 TGCGGTTTGACAGATAAAGATCT 58.168 39.130 0.00 0.00 43.63 2.75
88 89 5.245531 TGCGGTTTGACAGATAAAGATCTT 58.754 37.500 0.88 0.88 40.68 2.40
89 90 5.351465 TGCGGTTTGACAGATAAAGATCTTC 59.649 40.000 8.78 0.00 40.68 2.87
90 91 5.500931 GCGGTTTGACAGATAAAGATCTTCG 60.501 44.000 8.78 4.32 40.68 3.79
91 92 5.577164 CGGTTTGACAGATAAAGATCTTCGT 59.423 40.000 8.78 0.00 40.68 3.85
92 93 6.750501 CGGTTTGACAGATAAAGATCTTCGTA 59.249 38.462 8.78 0.00 40.68 3.43
93 94 7.043986 CGGTTTGACAGATAAAGATCTTCGTAG 60.044 40.741 8.78 1.20 40.68 3.51
94 95 7.974501 GGTTTGACAGATAAAGATCTTCGTAGA 59.025 37.037 8.78 0.00 40.68 2.59
95 96 9.355215 GTTTGACAGATAAAGATCTTCGTAGAA 57.645 33.333 8.78 0.00 45.90 2.10
103 104 9.360093 GATAAAGATCTTCGTAGAATATGTGGG 57.640 37.037 8.78 0.00 45.90 4.61
104 105 6.978674 AAGATCTTCGTAGAATATGTGGGA 57.021 37.500 0.88 0.00 45.90 4.37
105 106 6.582677 AGATCTTCGTAGAATATGTGGGAG 57.417 41.667 0.00 0.00 45.90 4.30
106 107 4.585955 TCTTCGTAGAATATGTGGGAGC 57.414 45.455 0.00 0.00 45.90 4.70
107 108 3.321111 TCTTCGTAGAATATGTGGGAGCC 59.679 47.826 0.00 0.00 45.90 4.70
108 109 2.673258 TCGTAGAATATGTGGGAGCCA 58.327 47.619 0.00 0.00 0.00 4.75
109 110 3.035363 TCGTAGAATATGTGGGAGCCAA 58.965 45.455 0.00 0.00 34.18 4.52
110 111 3.646162 TCGTAGAATATGTGGGAGCCAAT 59.354 43.478 0.00 0.00 34.18 3.16
111 112 4.836175 TCGTAGAATATGTGGGAGCCAATA 59.164 41.667 0.00 0.00 34.18 1.90
112 113 5.483937 TCGTAGAATATGTGGGAGCCAATAT 59.516 40.000 0.00 0.00 34.18 1.28
113 114 5.582269 CGTAGAATATGTGGGAGCCAATATG 59.418 44.000 0.00 0.00 34.18 1.78
114 115 5.848286 AGAATATGTGGGAGCCAATATGA 57.152 39.130 0.00 0.00 34.18 2.15
115 116 5.813383 AGAATATGTGGGAGCCAATATGAG 58.187 41.667 0.00 0.00 34.18 2.90
116 117 2.283145 ATGTGGGAGCCAATATGAGC 57.717 50.000 0.00 0.00 34.18 4.26
117 118 0.918258 TGTGGGAGCCAATATGAGCA 59.082 50.000 0.54 0.00 34.18 4.26
118 119 1.496001 TGTGGGAGCCAATATGAGCAT 59.504 47.619 0.54 0.00 34.18 3.79
119 120 2.157738 GTGGGAGCCAATATGAGCATC 58.842 52.381 0.54 0.00 34.18 3.91
120 121 1.074405 TGGGAGCCAATATGAGCATCC 59.926 52.381 0.54 4.38 0.00 3.51
121 122 1.074405 GGGAGCCAATATGAGCATCCA 59.926 52.381 13.12 0.00 31.73 3.41
122 123 2.434428 GGAGCCAATATGAGCATCCAG 58.566 52.381 0.54 0.00 0.00 3.86
123 124 2.434428 GAGCCAATATGAGCATCCAGG 58.566 52.381 0.54 0.00 0.00 4.45
124 125 1.779092 AGCCAATATGAGCATCCAGGT 59.221 47.619 0.54 0.00 0.00 4.00
125 126 2.176364 AGCCAATATGAGCATCCAGGTT 59.824 45.455 0.54 0.00 0.00 3.50
126 127 2.555757 GCCAATATGAGCATCCAGGTTC 59.444 50.000 0.00 0.00 0.00 3.62
127 128 3.152341 CCAATATGAGCATCCAGGTTCC 58.848 50.000 0.00 0.00 0.00 3.62
128 129 2.810274 CAATATGAGCATCCAGGTTCCG 59.190 50.000 0.00 0.00 0.00 4.30
129 130 0.106708 TATGAGCATCCAGGTTCCGC 59.893 55.000 0.00 0.00 0.00 5.54
130 131 1.630126 ATGAGCATCCAGGTTCCGCT 61.630 55.000 0.00 0.00 35.14 5.52
131 132 0.975556 TGAGCATCCAGGTTCCGCTA 60.976 55.000 0.00 0.00 31.86 4.26
132 133 0.394565 GAGCATCCAGGTTCCGCTAT 59.605 55.000 0.00 0.00 31.86 2.97
133 134 0.839946 AGCATCCAGGTTCCGCTATT 59.160 50.000 0.00 0.00 0.00 1.73
134 135 0.947244 GCATCCAGGTTCCGCTATTG 59.053 55.000 0.00 0.00 0.00 1.90
135 136 1.597742 CATCCAGGTTCCGCTATTGG 58.402 55.000 0.00 0.00 0.00 3.16
136 137 1.134098 CATCCAGGTTCCGCTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
137 138 0.988832 TCCAGGTTCCGCTATTGGTT 59.011 50.000 0.00 0.00 0.00 3.67
138 139 2.189676 TCCAGGTTCCGCTATTGGTTA 58.810 47.619 0.00 0.00 0.00 2.85
139 140 2.775384 TCCAGGTTCCGCTATTGGTTAT 59.225 45.455 0.00 0.00 0.00 1.89
140 141 3.201266 TCCAGGTTCCGCTATTGGTTATT 59.799 43.478 0.00 0.00 0.00 1.40
141 142 3.315191 CCAGGTTCCGCTATTGGTTATTG 59.685 47.826 0.00 0.00 0.00 1.90
142 143 4.196193 CAGGTTCCGCTATTGGTTATTGA 58.804 43.478 0.00 0.00 0.00 2.57
143 144 4.035208 CAGGTTCCGCTATTGGTTATTGAC 59.965 45.833 0.00 0.00 0.00 3.18
164 165 3.314339 GAGACGTGTCTCGGTCATG 57.686 57.895 13.75 0.00 45.49 3.07
165 166 0.522180 GAGACGTGTCTCGGTCATGT 59.478 55.000 13.75 0.00 45.49 3.21
166 167 0.522180 AGACGTGTCTCGGTCATGTC 59.478 55.000 14.86 14.86 46.16 3.06
167 168 0.522180 GACGTGTCTCGGTCATGTCT 59.478 55.000 0.00 0.00 43.95 3.41
168 169 1.736126 GACGTGTCTCGGTCATGTCTA 59.264 52.381 0.00 0.00 43.95 2.59
169 170 1.467734 ACGTGTCTCGGTCATGTCTAC 59.532 52.381 0.00 0.00 44.69 2.59
170 171 1.467342 CGTGTCTCGGTCATGTCTACA 59.533 52.381 0.00 0.00 35.71 2.74
171 172 2.097629 CGTGTCTCGGTCATGTCTACAT 59.902 50.000 0.00 0.00 34.74 2.29
172 173 3.311596 CGTGTCTCGGTCATGTCTACATA 59.688 47.826 0.00 0.00 33.77 2.29
173 174 4.552961 CGTGTCTCGGTCATGTCTACATAG 60.553 50.000 0.00 0.00 33.77 2.23
174 175 4.335874 GTGTCTCGGTCATGTCTACATAGT 59.664 45.833 0.00 0.00 34.26 2.12
175 176 4.948004 TGTCTCGGTCATGTCTACATAGTT 59.052 41.667 0.00 0.00 34.26 2.24
176 177 5.066117 TGTCTCGGTCATGTCTACATAGTTC 59.934 44.000 0.00 0.00 34.26 3.01
177 178 5.297278 GTCTCGGTCATGTCTACATAGTTCT 59.703 44.000 0.00 0.00 34.26 3.01
178 179 5.527951 TCTCGGTCATGTCTACATAGTTCTC 59.472 44.000 0.00 0.00 34.26 2.87
179 180 4.272748 TCGGTCATGTCTACATAGTTCTCG 59.727 45.833 0.00 0.00 34.26 4.04
180 181 4.272748 CGGTCATGTCTACATAGTTCTCGA 59.727 45.833 0.00 0.00 34.26 4.04
181 182 5.220796 CGGTCATGTCTACATAGTTCTCGAA 60.221 44.000 0.00 0.00 34.26 3.71
182 183 5.972382 GGTCATGTCTACATAGTTCTCGAAC 59.028 44.000 1.62 1.62 36.67 3.95
183 184 5.972382 GTCATGTCTACATAGTTCTCGAACC 59.028 44.000 6.20 0.00 36.90 3.62
184 185 4.978083 TGTCTACATAGTTCTCGAACCC 57.022 45.455 6.20 0.00 42.06 4.11
185 186 3.376234 TGTCTACATAGTTCTCGAACCCG 59.624 47.826 6.20 0.00 42.06 5.28
186 187 3.376546 GTCTACATAGTTCTCGAACCCGT 59.623 47.826 6.20 4.41 42.06 5.28
187 188 4.572389 GTCTACATAGTTCTCGAACCCGTA 59.428 45.833 6.20 5.21 42.06 4.02
188 189 4.813161 TCTACATAGTTCTCGAACCCGTAG 59.187 45.833 16.66 16.66 42.06 3.51
201 202 4.430765 CGTAGGGTCCGCACGCTT 62.431 66.667 0.00 0.00 43.11 4.68
202 203 2.887360 GTAGGGTCCGCACGCTTA 59.113 61.111 0.00 0.00 43.11 3.09
203 204 1.216178 GTAGGGTCCGCACGCTTAA 59.784 57.895 0.00 0.00 43.11 1.85
204 205 0.390209 GTAGGGTCCGCACGCTTAAA 60.390 55.000 0.00 0.00 43.11 1.52
205 206 0.108520 TAGGGTCCGCACGCTTAAAG 60.109 55.000 0.00 0.00 43.11 1.85
206 207 1.670083 GGGTCCGCACGCTTAAAGT 60.670 57.895 0.00 0.00 32.63 2.66
207 208 1.232621 GGGTCCGCACGCTTAAAGTT 61.233 55.000 0.00 0.00 32.63 2.66
208 209 0.589708 GGTCCGCACGCTTAAAGTTT 59.410 50.000 0.00 0.00 0.00 2.66
209 210 1.399343 GGTCCGCACGCTTAAAGTTTC 60.399 52.381 0.00 0.00 0.00 2.78
210 211 0.509499 TCCGCACGCTTAAAGTTTCG 59.491 50.000 0.00 0.00 0.00 3.46
211 212 0.509499 CCGCACGCTTAAAGTTTCGA 59.491 50.000 2.57 0.00 0.00 3.71
212 213 1.127951 CCGCACGCTTAAAGTTTCGAT 59.872 47.619 2.57 0.00 0.00 3.59
213 214 2.158143 CGCACGCTTAAAGTTTCGATG 58.842 47.619 2.57 0.00 0.00 3.84
214 215 2.159894 CGCACGCTTAAAGTTTCGATGA 60.160 45.455 2.57 0.00 0.00 2.92
215 216 3.153735 GCACGCTTAAAGTTTCGATGAC 58.846 45.455 2.57 0.00 0.00 3.06
216 217 3.363575 GCACGCTTAAAGTTTCGATGACA 60.364 43.478 2.57 0.00 0.00 3.58
217 218 4.386230 CACGCTTAAAGTTTCGATGACAG 58.614 43.478 2.57 0.00 0.00 3.51
218 219 4.056050 ACGCTTAAAGTTTCGATGACAGT 58.944 39.130 2.57 0.00 0.00 3.55
219 220 4.510340 ACGCTTAAAGTTTCGATGACAGTT 59.490 37.500 2.57 0.00 0.00 3.16
220 221 5.693104 ACGCTTAAAGTTTCGATGACAGTTA 59.307 36.000 2.57 0.00 0.00 2.24
221 222 6.367969 ACGCTTAAAGTTTCGATGACAGTTAT 59.632 34.615 2.57 0.00 0.00 1.89
222 223 7.543172 ACGCTTAAAGTTTCGATGACAGTTATA 59.457 33.333 2.57 0.00 0.00 0.98
223 224 8.540492 CGCTTAAAGTTTCGATGACAGTTATAT 58.460 33.333 0.00 0.00 0.00 0.86
251 252 9.607988 ATGAGTTTATATGTTTTGATGTACCGA 57.392 29.630 0.00 0.00 0.00 4.69
252 253 9.438228 TGAGTTTATATGTTTTGATGTACCGAA 57.562 29.630 0.00 0.00 0.00 4.30
253 254 9.916397 GAGTTTATATGTTTTGATGTACCGAAG 57.084 33.333 0.00 0.00 0.00 3.79
269 270 2.274920 GAAGGTAGTTCGAAGTCCCG 57.725 55.000 9.20 0.00 0.00 5.14
270 271 0.893447 AAGGTAGTTCGAAGTCCCGG 59.107 55.000 9.20 0.00 0.00 5.73
271 272 0.038744 AGGTAGTTCGAAGTCCCGGA 59.961 55.000 9.20 0.00 0.00 5.14
272 273 1.109609 GGTAGTTCGAAGTCCCGGAT 58.890 55.000 9.20 0.00 0.00 4.18
273 274 1.202382 GGTAGTTCGAAGTCCCGGATG 60.202 57.143 9.20 0.00 0.00 3.51
274 275 1.475682 GTAGTTCGAAGTCCCGGATGT 59.524 52.381 9.20 0.00 0.00 3.06
275 276 0.246635 AGTTCGAAGTCCCGGATGTG 59.753 55.000 0.73 0.00 0.00 3.21
276 277 0.245539 GTTCGAAGTCCCGGATGTGA 59.754 55.000 0.73 0.00 0.00 3.58
277 278 1.134788 GTTCGAAGTCCCGGATGTGAT 60.135 52.381 0.73 0.00 0.00 3.06
278 279 0.744874 TCGAAGTCCCGGATGTGATC 59.255 55.000 0.73 0.00 0.00 2.92
279 280 0.459899 CGAAGTCCCGGATGTGATCA 59.540 55.000 0.73 0.00 0.00 2.92
280 281 1.802880 CGAAGTCCCGGATGTGATCAC 60.803 57.143 19.27 19.27 0.00 3.06
281 282 0.175760 AAGTCCCGGATGTGATCACG 59.824 55.000 20.54 8.81 0.00 4.35
282 283 1.227263 GTCCCGGATGTGATCACGG 60.227 63.158 20.54 17.03 40.49 4.94
283 284 1.380650 TCCCGGATGTGATCACGGA 60.381 57.895 20.64 17.06 42.14 4.69
284 285 1.227263 CCCGGATGTGATCACGGAC 60.227 63.158 20.64 13.99 42.14 4.79
285 286 1.515487 CCGGATGTGATCACGGACA 59.485 57.895 20.54 3.72 42.14 4.02
286 287 0.104855 CCGGATGTGATCACGGACAT 59.895 55.000 20.54 8.71 42.14 3.06
287 288 1.211743 CGGATGTGATCACGGACATG 58.788 55.000 20.54 4.98 32.85 3.21
288 289 1.202405 CGGATGTGATCACGGACATGA 60.202 52.381 20.54 1.72 32.85 3.07
289 290 2.205074 GGATGTGATCACGGACATGAC 58.795 52.381 20.54 0.00 32.85 3.06
290 291 1.854743 GATGTGATCACGGACATGACG 59.145 52.381 20.54 6.35 32.85 4.35
291 292 0.885196 TGTGATCACGGACATGACGA 59.115 50.000 20.54 0.00 34.93 4.20
292 293 1.135402 TGTGATCACGGACATGACGAG 60.135 52.381 20.54 12.05 34.93 4.18
293 294 0.455815 TGATCACGGACATGACGAGG 59.544 55.000 18.41 11.22 34.93 4.63
294 295 0.738975 GATCACGGACATGACGAGGA 59.261 55.000 18.41 14.97 34.93 3.71
295 296 0.741326 ATCACGGACATGACGAGGAG 59.259 55.000 18.41 7.68 34.93 3.69
296 297 0.608308 TCACGGACATGACGAGGAGT 60.608 55.000 18.41 0.00 34.93 3.85
310 311 3.594603 GAGGAGTCTCGAAATGGTTGA 57.405 47.619 0.00 0.00 0.00 3.18
311 312 3.516615 GAGGAGTCTCGAAATGGTTGAG 58.483 50.000 0.00 0.00 0.00 3.02
312 313 3.165875 AGGAGTCTCGAAATGGTTGAGA 58.834 45.455 0.00 0.00 36.46 3.27
317 318 4.535526 TCTCGAAATGGTTGAGACATGA 57.464 40.909 0.00 0.00 34.00 3.07
318 319 4.893608 TCTCGAAATGGTTGAGACATGAA 58.106 39.130 0.00 0.00 34.00 2.57
319 320 4.931601 TCTCGAAATGGTTGAGACATGAAG 59.068 41.667 0.00 0.00 34.00 3.02
320 321 4.893608 TCGAAATGGTTGAGACATGAAGA 58.106 39.130 0.00 0.00 0.00 2.87
321 322 5.491070 TCGAAATGGTTGAGACATGAAGAT 58.509 37.500 0.00 0.00 0.00 2.40
322 323 5.939883 TCGAAATGGTTGAGACATGAAGATT 59.060 36.000 0.00 0.00 0.00 2.40
323 324 6.025896 CGAAATGGTTGAGACATGAAGATTG 58.974 40.000 0.00 0.00 0.00 2.67
324 325 6.128200 CGAAATGGTTGAGACATGAAGATTGA 60.128 38.462 0.00 0.00 0.00 2.57
325 326 7.414873 CGAAATGGTTGAGACATGAAGATTGAT 60.415 37.037 0.00 0.00 0.00 2.57
326 327 8.812513 AAATGGTTGAGACATGAAGATTGATA 57.187 30.769 0.00 0.00 0.00 2.15
327 328 8.991783 AATGGTTGAGACATGAAGATTGATAT 57.008 30.769 0.00 0.00 0.00 1.63
334 335 9.716531 TGAGACATGAAGATTGATATATTGGAC 57.283 33.333 0.00 0.00 0.00 4.02
335 336 8.768957 AGACATGAAGATTGATATATTGGACG 57.231 34.615 0.00 0.00 0.00 4.79
336 337 8.588472 AGACATGAAGATTGATATATTGGACGA 58.412 33.333 0.00 0.00 0.00 4.20
337 338 8.539770 ACATGAAGATTGATATATTGGACGAC 57.460 34.615 0.00 0.00 0.00 4.34
338 339 8.370940 ACATGAAGATTGATATATTGGACGACT 58.629 33.333 0.00 0.00 0.00 4.18
339 340 9.860898 CATGAAGATTGATATATTGGACGACTA 57.139 33.333 0.00 0.00 0.00 2.59
346 347 9.967346 ATTGATATATTGGACGACTATATTCGG 57.033 33.333 15.80 0.12 43.58 4.30
347 348 8.741603 TGATATATTGGACGACTATATTCGGA 57.258 34.615 15.80 1.21 43.58 4.55
348 349 8.618677 TGATATATTGGACGACTATATTCGGAC 58.381 37.037 15.80 8.96 43.58 4.79
349 350 6.829229 ATATTGGACGACTATATTCGGACA 57.171 37.500 15.80 11.11 43.58 4.02
350 351 3.976793 TGGACGACTATATTCGGACAC 57.023 47.619 15.80 4.76 43.58 3.67
351 352 2.620115 TGGACGACTATATTCGGACACC 59.380 50.000 15.80 12.80 43.58 4.16
369 370 2.768045 GGAATGGTTCCGGGGGTT 59.232 61.111 0.00 0.00 40.59 4.11
370 371 2.000983 GGAATGGTTCCGGGGGTTA 58.999 57.895 0.00 0.00 40.59 2.85
371 372 0.554305 GGAATGGTTCCGGGGGTTAT 59.446 55.000 0.00 0.00 40.59 1.89
372 373 1.478105 GGAATGGTTCCGGGGGTTATC 60.478 57.143 0.00 0.00 40.59 1.75
373 374 0.181824 AATGGTTCCGGGGGTTATCG 59.818 55.000 0.00 0.00 0.00 2.92
374 375 1.702022 ATGGTTCCGGGGGTTATCGG 61.702 60.000 0.00 0.00 46.89 4.18
383 384 4.861102 CGGGGGTTATCGGATATATACC 57.139 50.000 8.30 8.30 0.00 2.73
384 385 4.217510 CGGGGGTTATCGGATATATACCA 58.782 47.826 15.67 0.00 0.00 3.25
385 386 4.280174 CGGGGGTTATCGGATATATACCAG 59.720 50.000 15.67 6.87 0.00 4.00
386 387 5.461327 GGGGGTTATCGGATATATACCAGA 58.539 45.833 15.67 0.00 0.00 3.86
387 388 5.539193 GGGGGTTATCGGATATATACCAGAG 59.461 48.000 15.67 0.00 0.00 3.35
388 389 6.134754 GGGGTTATCGGATATATACCAGAGT 58.865 44.000 15.67 0.00 0.00 3.24
389 390 7.293073 GGGGTTATCGGATATATACCAGAGTA 58.707 42.308 15.67 0.00 0.00 2.59
390 391 7.230309 GGGGTTATCGGATATATACCAGAGTAC 59.770 44.444 15.67 0.00 0.00 2.73
391 392 7.230309 GGGTTATCGGATATATACCAGAGTACC 59.770 44.444 15.67 8.41 0.00 3.34
392 393 7.041508 GGTTATCGGATATATACCAGAGTACCG 60.042 44.444 10.96 0.00 35.51 4.02
393 394 4.774124 TCGGATATATACCAGAGTACCGG 58.226 47.826 0.00 0.00 35.13 5.28
394 395 3.881688 CGGATATATACCAGAGTACCGGG 59.118 52.174 6.32 0.00 32.35 5.73
395 396 4.213513 GGATATATACCAGAGTACCGGGG 58.786 52.174 6.32 0.00 34.13 5.73
396 397 2.617840 ATATACCAGAGTACCGGGGG 57.382 55.000 6.32 0.00 34.13 5.40
397 398 1.234806 TATACCAGAGTACCGGGGGT 58.765 55.000 6.32 5.91 40.16 4.95
398 399 0.340908 ATACCAGAGTACCGGGGGTT 59.659 55.000 6.32 0.00 37.09 4.11
399 400 1.006813 TACCAGAGTACCGGGGGTTA 58.993 55.000 6.32 0.00 37.09 2.85
400 401 0.615827 ACCAGAGTACCGGGGGTTAC 60.616 60.000 6.32 0.00 37.09 2.50
401 402 1.332889 CCAGAGTACCGGGGGTTACC 61.333 65.000 6.32 0.00 37.09 2.85
427 428 4.373551 CCCAGGGGTTTAATGGGC 57.626 61.111 0.00 0.00 46.86 5.36
428 429 1.382557 CCCAGGGGTTTAATGGGCC 60.383 63.158 0.00 0.00 46.86 5.80
429 430 1.703461 CCAGGGGTTTAATGGGCCT 59.297 57.895 4.53 0.00 0.00 5.19
430 431 0.930726 CCAGGGGTTTAATGGGCCTA 59.069 55.000 4.53 0.00 0.00 3.93
431 432 1.411074 CCAGGGGTTTAATGGGCCTAC 60.411 57.143 4.53 0.00 0.00 3.18
432 433 1.286553 CAGGGGTTTAATGGGCCTACA 59.713 52.381 4.53 0.00 0.00 2.74
433 434 2.091333 CAGGGGTTTAATGGGCCTACAT 60.091 50.000 4.53 0.00 0.00 2.29
434 435 2.091333 AGGGGTTTAATGGGCCTACATG 60.091 50.000 4.53 0.00 0.00 3.21
435 436 2.316108 GGGTTTAATGGGCCTACATGG 58.684 52.381 4.53 0.00 39.35 3.66
436 437 2.316108 GGTTTAATGGGCCTACATGGG 58.684 52.381 4.53 0.00 36.00 4.00
444 445 3.708013 GCCTACATGGGCCTTCTAC 57.292 57.895 4.53 0.00 45.92 2.59
445 446 1.132500 GCCTACATGGGCCTTCTACT 58.868 55.000 4.53 0.00 45.92 2.57
446 447 1.490910 GCCTACATGGGCCTTCTACTT 59.509 52.381 4.53 0.00 45.92 2.24
447 448 2.485657 GCCTACATGGGCCTTCTACTTC 60.486 54.545 4.53 0.00 45.92 3.01
448 449 2.224066 CCTACATGGGCCTTCTACTTCG 60.224 54.545 4.53 0.00 0.00 3.79
449 450 1.568504 ACATGGGCCTTCTACTTCGA 58.431 50.000 4.53 0.00 0.00 3.71
450 451 1.207329 ACATGGGCCTTCTACTTCGAC 59.793 52.381 4.53 0.00 0.00 4.20
451 452 1.207089 CATGGGCCTTCTACTTCGACA 59.793 52.381 4.53 0.00 0.00 4.35
452 453 1.344065 TGGGCCTTCTACTTCGACAA 58.656 50.000 4.53 0.00 0.00 3.18
453 454 1.001633 TGGGCCTTCTACTTCGACAAC 59.998 52.381 4.53 0.00 0.00 3.32
454 455 1.001633 GGGCCTTCTACTTCGACAACA 59.998 52.381 0.84 0.00 0.00 3.33
455 456 2.354805 GGGCCTTCTACTTCGACAACAT 60.355 50.000 0.84 0.00 0.00 2.71
456 457 2.930682 GGCCTTCTACTTCGACAACATC 59.069 50.000 0.00 0.00 0.00 3.06
457 458 3.585862 GCCTTCTACTTCGACAACATCA 58.414 45.455 0.00 0.00 0.00 3.07
458 459 3.368236 GCCTTCTACTTCGACAACATCAC 59.632 47.826 0.00 0.00 0.00 3.06
459 460 3.927142 CCTTCTACTTCGACAACATCACC 59.073 47.826 0.00 0.00 0.00 4.02
460 461 3.587797 TCTACTTCGACAACATCACCC 57.412 47.619 0.00 0.00 0.00 4.61
461 462 3.162666 TCTACTTCGACAACATCACCCT 58.837 45.455 0.00 0.00 0.00 4.34
462 463 2.930826 ACTTCGACAACATCACCCTT 57.069 45.000 0.00 0.00 0.00 3.95
463 464 2.494059 ACTTCGACAACATCACCCTTG 58.506 47.619 0.00 0.00 0.00 3.61
464 465 1.197721 CTTCGACAACATCACCCTTGC 59.802 52.381 0.00 0.00 0.00 4.01
465 466 0.107643 TCGACAACATCACCCTTGCA 59.892 50.000 0.00 0.00 0.00 4.08
466 467 1.167851 CGACAACATCACCCTTGCAT 58.832 50.000 0.00 0.00 0.00 3.96
467 468 1.131126 CGACAACATCACCCTTGCATC 59.869 52.381 0.00 0.00 0.00 3.91
468 469 2.161855 GACAACATCACCCTTGCATCA 58.838 47.619 0.00 0.00 0.00 3.07
469 470 1.888512 ACAACATCACCCTTGCATCAC 59.111 47.619 0.00 0.00 0.00 3.06
470 471 1.135603 CAACATCACCCTTGCATCACG 60.136 52.381 0.00 0.00 0.00 4.35
471 472 1.308069 ACATCACCCTTGCATCACGC 61.308 55.000 0.00 0.00 42.89 5.34
472 473 1.750399 ATCACCCTTGCATCACGCC 60.750 57.895 0.00 0.00 41.33 5.68
473 474 2.202236 ATCACCCTTGCATCACGCCT 62.202 55.000 0.00 0.00 41.33 5.52
474 475 2.360350 ACCCTTGCATCACGCCTG 60.360 61.111 0.00 0.00 41.33 4.85
475 476 3.818787 CCCTTGCATCACGCCTGC 61.819 66.667 0.00 0.00 41.33 4.85
481 482 3.190849 CATCACGCCTGCACCGAG 61.191 66.667 8.82 1.62 0.00 4.63
482 483 3.695606 ATCACGCCTGCACCGAGT 61.696 61.111 8.82 0.00 0.00 4.18
483 484 2.348104 ATCACGCCTGCACCGAGTA 61.348 57.895 8.82 0.00 0.00 2.59
484 485 2.284798 ATCACGCCTGCACCGAGTAG 62.285 60.000 8.82 0.00 0.00 2.57
488 489 3.449227 CCTGCACCGAGTAGGCGA 61.449 66.667 0.00 0.00 43.43 5.54
489 490 2.786495 CCTGCACCGAGTAGGCGAT 61.786 63.158 0.00 0.00 43.43 4.58
490 491 1.299468 CTGCACCGAGTAGGCGATC 60.299 63.158 0.00 0.00 46.52 3.69
491 492 2.004808 CTGCACCGAGTAGGCGATCA 62.005 60.000 0.00 0.00 46.52 2.92
492 493 1.364171 GCACCGAGTAGGCGATCAT 59.636 57.895 0.00 0.00 46.52 2.45
493 494 0.941463 GCACCGAGTAGGCGATCATG 60.941 60.000 0.00 0.00 46.52 3.07
494 495 0.385751 CACCGAGTAGGCGATCATGT 59.614 55.000 0.00 0.00 46.52 3.21
495 496 0.669077 ACCGAGTAGGCGATCATGTC 59.331 55.000 0.00 0.00 46.52 3.06
496 497 0.039074 CCGAGTAGGCGATCATGTCC 60.039 60.000 0.00 0.00 0.00 4.02
497 498 0.668535 CGAGTAGGCGATCATGTCCA 59.331 55.000 0.00 0.00 0.00 4.02
498 499 1.600663 CGAGTAGGCGATCATGTCCAC 60.601 57.143 0.00 0.00 0.00 4.02
499 500 1.683917 GAGTAGGCGATCATGTCCACT 59.316 52.381 0.00 0.00 0.00 4.00
500 501 2.101582 GAGTAGGCGATCATGTCCACTT 59.898 50.000 0.00 0.00 0.00 3.16
501 502 2.101582 AGTAGGCGATCATGTCCACTTC 59.898 50.000 0.00 0.00 0.00 3.01
502 503 1.198713 AGGCGATCATGTCCACTTCT 58.801 50.000 0.00 0.00 0.00 2.85
503 504 1.134580 AGGCGATCATGTCCACTTCTG 60.135 52.381 0.00 0.00 0.00 3.02
504 505 1.406069 GGCGATCATGTCCACTTCTGT 60.406 52.381 0.00 0.00 0.00 3.41
505 506 1.662629 GCGATCATGTCCACTTCTGTG 59.337 52.381 0.00 0.00 43.45 3.66
506 507 2.675032 GCGATCATGTCCACTTCTGTGA 60.675 50.000 0.00 0.00 46.55 3.58
507 508 2.926200 CGATCATGTCCACTTCTGTGAC 59.074 50.000 0.00 0.00 46.55 3.67
508 509 3.614870 CGATCATGTCCACTTCTGTGACA 60.615 47.826 0.00 0.00 46.55 3.58
509 510 4.511527 GATCATGTCCACTTCTGTGACAT 58.488 43.478 0.00 0.00 46.55 3.06
511 512 3.071457 TCATGTCCACTTCTGTGACATGT 59.929 43.478 23.43 0.00 46.95 3.21
512 513 4.283212 TCATGTCCACTTCTGTGACATGTA 59.717 41.667 23.43 12.69 46.95 2.29
513 514 4.681074 TGTCCACTTCTGTGACATGTAA 57.319 40.909 0.00 0.00 46.55 2.41
514 515 5.029807 TGTCCACTTCTGTGACATGTAAA 57.970 39.130 0.00 0.00 46.55 2.01
515 516 5.056480 TGTCCACTTCTGTGACATGTAAAG 58.944 41.667 0.00 0.83 46.55 1.85
516 517 4.452455 GTCCACTTCTGTGACATGTAAAGG 59.548 45.833 0.00 0.00 46.55 3.11
517 518 4.346709 TCCACTTCTGTGACATGTAAAGGA 59.653 41.667 0.00 0.00 46.55 3.36
518 519 5.013079 TCCACTTCTGTGACATGTAAAGGAT 59.987 40.000 0.00 0.00 46.55 3.24
519 520 5.352569 CCACTTCTGTGACATGTAAAGGATC 59.647 44.000 0.00 0.00 46.55 3.36
520 521 5.352569 CACTTCTGTGACATGTAAAGGATCC 59.647 44.000 2.48 2.48 46.55 3.36
521 522 4.487714 TCTGTGACATGTAAAGGATCCC 57.512 45.455 8.55 0.00 0.00 3.85
522 523 4.104086 TCTGTGACATGTAAAGGATCCCT 58.896 43.478 8.55 0.00 33.87 4.20
523 524 5.277250 TCTGTGACATGTAAAGGATCCCTA 58.723 41.667 8.55 0.00 31.13 3.53
524 525 5.724370 TCTGTGACATGTAAAGGATCCCTAA 59.276 40.000 8.55 0.00 31.13 2.69
525 526 6.214615 TCTGTGACATGTAAAGGATCCCTAAA 59.785 38.462 8.55 0.00 31.13 1.85
526 527 6.177610 TGTGACATGTAAAGGATCCCTAAAC 58.822 40.000 8.55 2.60 31.13 2.01
527 528 5.589050 GTGACATGTAAAGGATCCCTAAACC 59.411 44.000 8.55 0.00 31.13 3.27
528 529 5.125367 ACATGTAAAGGATCCCTAAACCC 57.875 43.478 8.55 0.00 31.13 4.11
529 530 4.794067 ACATGTAAAGGATCCCTAAACCCT 59.206 41.667 8.55 0.00 31.13 4.34
530 531 5.255443 ACATGTAAAGGATCCCTAAACCCTT 59.745 40.000 8.55 0.00 40.46 3.95
531 532 5.446260 TGTAAAGGATCCCTAAACCCTTC 57.554 43.478 8.55 0.00 37.99 3.46
532 533 5.105853 TGTAAAGGATCCCTAAACCCTTCT 58.894 41.667 8.55 0.00 37.99 2.85
533 534 4.864483 AAAGGATCCCTAAACCCTTCTC 57.136 45.455 8.55 0.00 37.99 2.87
534 535 3.805360 AGGATCCCTAAACCCTTCTCT 57.195 47.619 8.55 0.00 28.47 3.10
535 536 3.388913 AGGATCCCTAAACCCTTCTCTG 58.611 50.000 8.55 0.00 28.47 3.35
536 537 3.116174 GGATCCCTAAACCCTTCTCTGT 58.884 50.000 0.00 0.00 0.00 3.41
537 538 3.523972 GGATCCCTAAACCCTTCTCTGTT 59.476 47.826 0.00 0.00 0.00 3.16
538 539 4.018324 GGATCCCTAAACCCTTCTCTGTTT 60.018 45.833 0.00 0.00 38.22 2.83
539 540 5.191124 GGATCCCTAAACCCTTCTCTGTTTA 59.809 44.000 0.00 0.00 36.23 2.01
540 541 6.126449 GGATCCCTAAACCCTTCTCTGTTTAT 60.126 42.308 0.00 0.00 36.61 1.40
541 542 6.062258 TCCCTAAACCCTTCTCTGTTTATG 57.938 41.667 0.00 0.00 36.61 1.90
542 543 5.550403 TCCCTAAACCCTTCTCTGTTTATGT 59.450 40.000 0.00 0.00 36.61 2.29
543 544 6.045106 TCCCTAAACCCTTCTCTGTTTATGTT 59.955 38.462 0.00 0.00 36.61 2.71
544 545 7.238096 TCCCTAAACCCTTCTCTGTTTATGTTA 59.762 37.037 0.00 0.00 36.61 2.41
545 546 8.053355 CCCTAAACCCTTCTCTGTTTATGTTAT 58.947 37.037 0.00 0.00 36.61 1.89
549 550 9.462606 AAACCCTTCTCTGTTTATGTTATAAGG 57.537 33.333 0.00 0.00 33.15 2.69
550 551 8.159229 ACCCTTCTCTGTTTATGTTATAAGGT 57.841 34.615 0.00 0.00 31.12 3.50
551 552 8.047310 ACCCTTCTCTGTTTATGTTATAAGGTG 58.953 37.037 0.00 0.00 31.12 4.00
552 553 8.265055 CCCTTCTCTGTTTATGTTATAAGGTGA 58.735 37.037 0.00 0.00 31.12 4.02
553 554 9.838339 CCTTCTCTGTTTATGTTATAAGGTGAT 57.162 33.333 0.00 0.00 0.00 3.06
566 567 9.851686 TGTTATAAGGTGATCTAGATGCAATTT 57.148 29.630 10.74 8.26 0.00 1.82
570 571 7.507733 AAGGTGATCTAGATGCAATTTGATC 57.492 36.000 10.74 14.10 31.76 2.92
571 572 6.002704 AGGTGATCTAGATGCAATTTGATCC 58.997 40.000 10.74 4.31 30.81 3.36
572 573 6.002704 GGTGATCTAGATGCAATTTGATCCT 58.997 40.000 10.74 0.00 30.81 3.24
573 574 6.072618 GGTGATCTAGATGCAATTTGATCCTG 60.073 42.308 10.74 0.00 30.81 3.86
574 575 5.472478 TGATCTAGATGCAATTTGATCCTGC 59.528 40.000 10.74 0.00 36.60 4.85
575 576 5.045012 TCTAGATGCAATTTGATCCTGCT 57.955 39.130 0.00 0.00 37.00 4.24
576 577 6.178607 TCTAGATGCAATTTGATCCTGCTA 57.821 37.500 0.00 0.00 37.00 3.49
577 578 6.594744 TCTAGATGCAATTTGATCCTGCTAA 58.405 36.000 0.00 0.00 37.00 3.09
578 579 7.229308 TCTAGATGCAATTTGATCCTGCTAAT 58.771 34.615 0.00 0.00 37.00 1.73
579 580 6.085555 AGATGCAATTTGATCCTGCTAATG 57.914 37.500 0.00 0.00 37.00 1.90
580 581 4.659111 TGCAATTTGATCCTGCTAATGG 57.341 40.909 0.00 0.00 37.00 3.16
581 582 3.181473 TGCAATTTGATCCTGCTAATGGC 60.181 43.478 0.00 0.00 42.22 4.40
590 591 4.585070 GCTAATGGCATCCCAGCA 57.415 55.556 18.42 0.00 46.24 4.41
591 592 3.047039 GCTAATGGCATCCCAGCAT 57.953 52.632 18.42 0.00 46.24 3.79
592 593 2.205022 GCTAATGGCATCCCAGCATA 57.795 50.000 18.42 0.00 46.24 3.14
593 594 2.731572 GCTAATGGCATCCCAGCATAT 58.268 47.619 18.42 0.00 46.24 1.78
594 595 3.094572 GCTAATGGCATCCCAGCATATT 58.905 45.455 18.42 0.00 46.24 1.28
595 596 4.272489 GCTAATGGCATCCCAGCATATTA 58.728 43.478 18.42 0.00 46.24 0.98
596 597 4.891756 GCTAATGGCATCCCAGCATATTAT 59.108 41.667 18.42 0.00 46.24 1.28
597 598 5.009410 GCTAATGGCATCCCAGCATATTATC 59.991 44.000 18.42 0.00 46.24 1.75
598 599 3.370840 TGGCATCCCAGCATATTATCC 57.629 47.619 0.00 0.00 35.79 2.59
599 600 2.648808 TGGCATCCCAGCATATTATCCA 59.351 45.455 0.00 0.00 35.79 3.41
600 601 3.075732 TGGCATCCCAGCATATTATCCAA 59.924 43.478 0.00 0.00 35.79 3.53
601 602 3.445096 GGCATCCCAGCATATTATCCAAC 59.555 47.826 0.00 0.00 35.83 3.77
602 603 4.081406 GCATCCCAGCATATTATCCAACA 58.919 43.478 0.00 0.00 0.00 3.33
603 604 4.157289 GCATCCCAGCATATTATCCAACAG 59.843 45.833 0.00 0.00 0.00 3.16
604 605 3.754965 TCCCAGCATATTATCCAACAGC 58.245 45.455 0.00 0.00 0.00 4.40
605 606 2.821969 CCCAGCATATTATCCAACAGCC 59.178 50.000 0.00 0.00 0.00 4.85
606 607 3.489355 CCAGCATATTATCCAACAGCCA 58.511 45.455 0.00 0.00 0.00 4.75
607 608 3.254166 CCAGCATATTATCCAACAGCCAC 59.746 47.826 0.00 0.00 0.00 5.01
608 609 3.884693 CAGCATATTATCCAACAGCCACA 59.115 43.478 0.00 0.00 0.00 4.17
651 652 0.687354 AGTTGGACTCGATTGTGCCT 59.313 50.000 0.00 0.00 0.00 4.75
659 667 2.027192 ACTCGATTGTGCCTTGGTATGT 60.027 45.455 0.00 0.00 0.00 2.29
728 2423 2.284112 CCCACCCAGCCAGCAATT 60.284 61.111 0.00 0.00 0.00 2.32
758 2486 2.711922 CGGACTTGCTAGCTCCCGT 61.712 63.158 17.23 7.34 31.59 5.28
760 2488 1.605058 GGACTTGCTAGCTCCCGTCA 61.605 60.000 17.23 0.00 0.00 4.35
761 2489 0.461961 GACTTGCTAGCTCCCGTCAT 59.538 55.000 17.23 0.00 0.00 3.06
762 2490 0.461961 ACTTGCTAGCTCCCGTCATC 59.538 55.000 17.23 0.00 0.00 2.92
764 2492 0.747255 TTGCTAGCTCCCGTCATCTC 59.253 55.000 17.23 0.00 0.00 2.75
765 2493 0.395724 TGCTAGCTCCCGTCATCTCA 60.396 55.000 17.23 0.00 0.00 3.27
766 2494 0.965439 GCTAGCTCCCGTCATCTCAT 59.035 55.000 7.70 0.00 0.00 2.90
767 2495 1.067915 GCTAGCTCCCGTCATCTCATC 60.068 57.143 7.70 0.00 0.00 2.92
769 2497 1.327303 AGCTCCCGTCATCTCATCTC 58.673 55.000 0.00 0.00 0.00 2.75
770 2498 0.316841 GCTCCCGTCATCTCATCTCC 59.683 60.000 0.00 0.00 0.00 3.71
771 2499 0.965439 CTCCCGTCATCTCATCTCCC 59.035 60.000 0.00 0.00 0.00 4.30
773 2501 1.662608 CCGTCATCTCATCTCCCGG 59.337 63.158 0.00 0.00 0.00 5.73
774 2502 1.006805 CGTCATCTCATCTCCCGGC 60.007 63.158 0.00 0.00 0.00 6.13
775 2503 1.369321 GTCATCTCATCTCCCGGCC 59.631 63.158 0.00 0.00 0.00 6.13
776 2504 2.203082 TCATCTCATCTCCCGGCCG 61.203 63.158 21.04 21.04 0.00 6.13
777 2505 2.123251 ATCTCATCTCCCGGCCGT 60.123 61.111 26.12 0.65 0.00 5.68
778 2506 1.762460 ATCTCATCTCCCGGCCGTT 60.762 57.895 26.12 0.00 0.00 4.44
779 2507 1.749334 ATCTCATCTCCCGGCCGTTC 61.749 60.000 26.12 0.00 0.00 3.95
780 2508 3.774959 CTCATCTCCCGGCCGTTCG 62.775 68.421 26.12 11.26 0.00 3.95
781 2509 4.143333 CATCTCCCGGCCGTTCGT 62.143 66.667 26.12 2.62 0.00 3.85
782 2510 4.143333 ATCTCCCGGCCGTTCGTG 62.143 66.667 26.12 11.76 0.00 4.35
825 2553 1.516603 GGCTCCGACTCGTTAGTGC 60.517 63.158 0.00 0.00 35.56 4.40
1080 2872 1.002888 CTGGACATCACCTTCTGCTGT 59.997 52.381 0.00 0.00 31.68 4.40
1429 3292 7.116376 TCGTGTCTCTTGAAACTGTATTGATTC 59.884 37.037 0.00 0.00 0.00 2.52
1460 3323 6.599638 TGTAGTCCTGATCGATCATATACCTG 59.400 42.308 27.43 14.07 36.02 4.00
1544 3420 3.118702 TGAACCTGTGACTGGTTTCGTTA 60.119 43.478 24.62 9.33 43.82 3.18
1554 3430 5.163499 TGACTGGTTTCGTTATTGCCTTTTT 60.163 36.000 0.00 0.00 0.00 1.94
1825 3711 2.502947 CTCCACCTCATCTGATCAACCA 59.497 50.000 0.00 0.00 0.00 3.67
2233 4146 9.787435 AGTTGTTTAGGAAGTTACATAACATGA 57.213 29.630 0.00 0.00 38.62 3.07
2274 4189 6.264518 CCTCACAAACCAAGTTTACCTACATT 59.735 38.462 0.00 0.00 33.70 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.474196 CCGAGATTCGATCGTCGGTATC 60.474 54.545 27.43 17.34 43.74 2.24
1 2 1.463831 CCGAGATTCGATCGTCGGTAT 59.536 52.381 27.43 11.31 43.74 2.73
2 3 0.863799 CCGAGATTCGATCGTCGGTA 59.136 55.000 27.43 3.24 43.74 4.02
3 4 1.647629 CCGAGATTCGATCGTCGGT 59.352 57.895 27.43 9.08 43.74 4.69
4 5 1.082038 CCCGAGATTCGATCGTCGG 60.082 63.158 28.32 28.32 43.74 4.79
5 6 1.726322 GCCCGAGATTCGATCGTCG 60.726 63.158 15.94 16.14 43.74 5.12
6 7 0.248907 TTGCCCGAGATTCGATCGTC 60.249 55.000 15.94 6.30 43.74 4.20
7 8 0.249073 CTTGCCCGAGATTCGATCGT 60.249 55.000 15.94 0.00 43.74 3.73
8 9 0.249073 ACTTGCCCGAGATTCGATCG 60.249 55.000 9.36 9.36 43.74 3.69
9 10 2.795175 TACTTGCCCGAGATTCGATC 57.205 50.000 0.00 0.00 43.74 3.69
10 11 2.167693 TGTTACTTGCCCGAGATTCGAT 59.832 45.455 0.00 0.00 43.74 3.59
11 12 1.546923 TGTTACTTGCCCGAGATTCGA 59.453 47.619 0.00 0.00 43.74 3.71
12 13 2.004583 TGTTACTTGCCCGAGATTCG 57.995 50.000 0.00 0.00 40.07 3.34
13 14 3.808174 GGTATGTTACTTGCCCGAGATTC 59.192 47.826 0.00 0.00 0.00 2.52
14 15 3.740141 CGGTATGTTACTTGCCCGAGATT 60.740 47.826 0.00 0.00 37.66 2.40
15 16 2.223971 CGGTATGTTACTTGCCCGAGAT 60.224 50.000 0.00 0.00 37.66 2.75
16 17 1.135527 CGGTATGTTACTTGCCCGAGA 59.864 52.381 0.00 0.00 37.66 4.04
17 18 1.135527 TCGGTATGTTACTTGCCCGAG 59.864 52.381 8.84 0.00 39.36 4.63
18 19 1.184431 TCGGTATGTTACTTGCCCGA 58.816 50.000 8.84 8.84 41.73 5.14
19 20 1.864711 CATCGGTATGTTACTTGCCCG 59.135 52.381 0.30 0.00 36.83 6.13
20 21 2.870411 GTCATCGGTATGTTACTTGCCC 59.130 50.000 0.30 0.00 34.50 5.36
21 22 3.527533 TGTCATCGGTATGTTACTTGCC 58.472 45.455 0.00 0.00 34.50 4.52
22 23 5.447279 CCTTTGTCATCGGTATGTTACTTGC 60.447 44.000 0.00 0.00 34.50 4.01
23 24 5.064707 CCCTTTGTCATCGGTATGTTACTTG 59.935 44.000 0.00 0.00 34.50 3.16
24 25 5.046159 TCCCTTTGTCATCGGTATGTTACTT 60.046 40.000 0.00 0.00 34.50 2.24
25 26 4.468510 TCCCTTTGTCATCGGTATGTTACT 59.531 41.667 0.00 0.00 34.50 2.24
26 27 4.761975 TCCCTTTGTCATCGGTATGTTAC 58.238 43.478 0.00 0.00 34.50 2.50
27 28 5.180271 GTTCCCTTTGTCATCGGTATGTTA 58.820 41.667 0.00 0.00 34.50 2.41
28 29 3.992943 TCCCTTTGTCATCGGTATGTT 57.007 42.857 0.00 0.00 34.50 2.71
29 30 3.008594 TGTTCCCTTTGTCATCGGTATGT 59.991 43.478 0.00 0.00 34.50 2.29
30 31 3.605634 TGTTCCCTTTGTCATCGGTATG 58.394 45.455 0.00 0.00 0.00 2.39
31 32 3.992943 TGTTCCCTTTGTCATCGGTAT 57.007 42.857 0.00 0.00 0.00 2.73
32 33 3.404899 GTTGTTCCCTTTGTCATCGGTA 58.595 45.455 0.00 0.00 0.00 4.02
33 34 2.227194 GTTGTTCCCTTTGTCATCGGT 58.773 47.619 0.00 0.00 0.00 4.69
34 35 1.196808 CGTTGTTCCCTTTGTCATCGG 59.803 52.381 0.00 0.00 0.00 4.18
35 36 1.871039 ACGTTGTTCCCTTTGTCATCG 59.129 47.619 0.00 0.00 0.00 3.84
36 37 4.454504 ACATACGTTGTTCCCTTTGTCATC 59.545 41.667 0.00 0.00 33.74 2.92
37 38 4.394729 ACATACGTTGTTCCCTTTGTCAT 58.605 39.130 0.00 0.00 33.74 3.06
38 39 3.811083 ACATACGTTGTTCCCTTTGTCA 58.189 40.909 0.00 0.00 33.74 3.58
39 40 4.533222 CAACATACGTTGTTCCCTTTGTC 58.467 43.478 11.51 0.00 45.55 3.18
40 41 4.561735 CAACATACGTTGTTCCCTTTGT 57.438 40.909 11.51 0.00 45.55 2.83
51 52 4.213694 TCAAACCGCATAACAACATACGTT 59.786 37.500 0.00 0.00 35.01 3.99
52 53 3.747010 TCAAACCGCATAACAACATACGT 59.253 39.130 0.00 0.00 0.00 3.57
53 54 4.085884 GTCAAACCGCATAACAACATACG 58.914 43.478 0.00 0.00 0.00 3.06
54 55 5.037015 TGTCAAACCGCATAACAACATAC 57.963 39.130 0.00 0.00 0.00 2.39
55 56 4.998033 TCTGTCAAACCGCATAACAACATA 59.002 37.500 0.00 0.00 0.00 2.29
56 57 3.818210 TCTGTCAAACCGCATAACAACAT 59.182 39.130 0.00 0.00 0.00 2.71
57 58 3.206964 TCTGTCAAACCGCATAACAACA 58.793 40.909 0.00 0.00 0.00 3.33
58 59 3.889196 TCTGTCAAACCGCATAACAAC 57.111 42.857 0.00 0.00 0.00 3.32
59 60 6.428465 TCTTTATCTGTCAAACCGCATAACAA 59.572 34.615 0.00 0.00 0.00 2.83
60 61 5.935206 TCTTTATCTGTCAAACCGCATAACA 59.065 36.000 0.00 0.00 0.00 2.41
61 62 6.417191 TCTTTATCTGTCAAACCGCATAAC 57.583 37.500 0.00 0.00 0.00 1.89
62 63 7.047891 AGATCTTTATCTGTCAAACCGCATAA 58.952 34.615 0.00 0.00 41.08 1.90
63 64 6.582636 AGATCTTTATCTGTCAAACCGCATA 58.417 36.000 0.00 0.00 41.08 3.14
64 65 5.431765 AGATCTTTATCTGTCAAACCGCAT 58.568 37.500 0.00 0.00 41.08 4.73
65 66 4.832248 AGATCTTTATCTGTCAAACCGCA 58.168 39.130 0.00 0.00 41.08 5.69
66 67 5.500931 CGAAGATCTTTATCTGTCAAACCGC 60.501 44.000 9.87 0.00 41.81 5.68
67 68 5.577164 ACGAAGATCTTTATCTGTCAAACCG 59.423 40.000 9.87 6.15 41.81 4.44
68 69 6.969828 ACGAAGATCTTTATCTGTCAAACC 57.030 37.500 9.87 0.00 41.81 3.27
69 70 8.912787 TCTACGAAGATCTTTATCTGTCAAAC 57.087 34.615 9.87 0.00 41.81 2.93
77 78 9.360093 CCCACATATTCTACGAAGATCTTTATC 57.640 37.037 9.87 0.00 0.00 1.75
78 79 9.090103 TCCCACATATTCTACGAAGATCTTTAT 57.910 33.333 9.87 3.58 0.00 1.40
79 80 8.473358 TCCCACATATTCTACGAAGATCTTTA 57.527 34.615 9.87 0.00 0.00 1.85
80 81 7.361457 TCCCACATATTCTACGAAGATCTTT 57.639 36.000 9.87 0.00 0.00 2.52
81 82 6.517529 GCTCCCACATATTCTACGAAGATCTT 60.518 42.308 7.95 7.95 0.00 2.40
82 83 5.047660 GCTCCCACATATTCTACGAAGATCT 60.048 44.000 0.00 0.00 0.00 2.75
83 84 5.164954 GCTCCCACATATTCTACGAAGATC 58.835 45.833 0.00 0.00 0.00 2.75
84 85 4.021016 GGCTCCCACATATTCTACGAAGAT 60.021 45.833 0.00 0.00 0.00 2.40
85 86 3.321111 GGCTCCCACATATTCTACGAAGA 59.679 47.826 0.00 0.00 0.00 2.87
86 87 3.069586 TGGCTCCCACATATTCTACGAAG 59.930 47.826 0.00 0.00 0.00 3.79
87 88 3.035363 TGGCTCCCACATATTCTACGAA 58.965 45.455 0.00 0.00 0.00 3.85
88 89 2.673258 TGGCTCCCACATATTCTACGA 58.327 47.619 0.00 0.00 0.00 3.43
89 90 3.469008 TTGGCTCCCACATATTCTACG 57.531 47.619 0.00 0.00 30.78 3.51
90 91 6.711277 TCATATTGGCTCCCACATATTCTAC 58.289 40.000 0.00 0.00 30.78 2.59
91 92 6.577039 GCTCATATTGGCTCCCACATATTCTA 60.577 42.308 0.00 0.00 30.78 2.10
92 93 5.805751 GCTCATATTGGCTCCCACATATTCT 60.806 44.000 0.00 0.00 30.78 2.40
93 94 4.397417 GCTCATATTGGCTCCCACATATTC 59.603 45.833 0.00 0.00 30.78 1.75
94 95 4.202599 TGCTCATATTGGCTCCCACATATT 60.203 41.667 0.00 0.00 30.78 1.28
95 96 3.331591 TGCTCATATTGGCTCCCACATAT 59.668 43.478 0.00 0.00 30.78 1.78
96 97 2.710471 TGCTCATATTGGCTCCCACATA 59.290 45.455 0.00 0.00 30.78 2.29
97 98 1.496001 TGCTCATATTGGCTCCCACAT 59.504 47.619 0.00 0.00 30.78 3.21
98 99 0.918258 TGCTCATATTGGCTCCCACA 59.082 50.000 0.00 0.00 30.78 4.17
99 100 2.157738 GATGCTCATATTGGCTCCCAC 58.842 52.381 0.00 0.00 30.78 4.61
100 101 1.074405 GGATGCTCATATTGGCTCCCA 59.926 52.381 0.00 0.00 0.00 4.37
101 102 1.074405 TGGATGCTCATATTGGCTCCC 59.926 52.381 0.00 0.00 0.00 4.30
102 103 2.434428 CTGGATGCTCATATTGGCTCC 58.566 52.381 0.00 0.00 0.00 4.70
103 104 2.224719 ACCTGGATGCTCATATTGGCTC 60.225 50.000 0.00 0.00 0.00 4.70
104 105 1.779092 ACCTGGATGCTCATATTGGCT 59.221 47.619 0.00 0.00 0.00 4.75
105 106 2.283145 ACCTGGATGCTCATATTGGC 57.717 50.000 0.00 0.00 0.00 4.52
106 107 3.152341 GGAACCTGGATGCTCATATTGG 58.848 50.000 0.00 0.00 0.00 3.16
107 108 2.810274 CGGAACCTGGATGCTCATATTG 59.190 50.000 0.00 0.00 0.00 1.90
108 109 2.811873 GCGGAACCTGGATGCTCATATT 60.812 50.000 0.00 0.00 0.00 1.28
109 110 1.271054 GCGGAACCTGGATGCTCATAT 60.271 52.381 0.00 0.00 0.00 1.78
110 111 0.106708 GCGGAACCTGGATGCTCATA 59.893 55.000 0.00 0.00 0.00 2.15
111 112 1.153086 GCGGAACCTGGATGCTCAT 60.153 57.895 0.00 0.00 0.00 2.90
112 113 0.975556 TAGCGGAACCTGGATGCTCA 60.976 55.000 0.00 0.00 37.12 4.26
113 114 0.394565 ATAGCGGAACCTGGATGCTC 59.605 55.000 0.00 0.00 37.12 4.26
114 115 0.839946 AATAGCGGAACCTGGATGCT 59.160 50.000 0.00 6.34 39.59 3.79
115 116 0.947244 CAATAGCGGAACCTGGATGC 59.053 55.000 0.00 0.00 0.00 3.91
116 117 1.134098 ACCAATAGCGGAACCTGGATG 60.134 52.381 0.00 0.00 0.00 3.51
117 118 1.213296 ACCAATAGCGGAACCTGGAT 58.787 50.000 0.00 0.00 0.00 3.41
118 119 0.988832 AACCAATAGCGGAACCTGGA 59.011 50.000 0.00 0.00 0.00 3.86
119 120 2.702592 TAACCAATAGCGGAACCTGG 57.297 50.000 0.00 0.00 0.00 4.45
120 121 4.035208 GTCAATAACCAATAGCGGAACCTG 59.965 45.833 0.00 0.00 0.00 4.00
121 122 4.196971 GTCAATAACCAATAGCGGAACCT 58.803 43.478 0.00 0.00 0.00 3.50
122 123 4.547406 GTCAATAACCAATAGCGGAACC 57.453 45.455 0.00 0.00 0.00 3.62
134 135 1.067354 ACACGTCTCCGGTCAATAACC 60.067 52.381 0.00 0.00 45.45 2.85
135 136 2.094854 AGACACGTCTCCGGTCAATAAC 60.095 50.000 0.00 0.00 37.00 1.89
136 137 2.165167 AGACACGTCTCCGGTCAATAA 58.835 47.619 0.00 0.00 37.00 1.40
137 138 1.830279 AGACACGTCTCCGGTCAATA 58.170 50.000 0.00 0.00 37.00 1.90
138 139 2.654802 AGACACGTCTCCGGTCAAT 58.345 52.632 0.00 0.00 37.00 2.57
139 140 4.169271 AGACACGTCTCCGGTCAA 57.831 55.556 0.00 0.00 37.00 3.18
147 148 0.522180 GACATGACCGAGACACGTCT 59.478 55.000 0.00 0.00 43.78 4.18
148 149 0.522180 AGACATGACCGAGACACGTC 59.478 55.000 0.00 0.00 40.78 4.34
149 150 1.467734 GTAGACATGACCGAGACACGT 59.532 52.381 0.00 0.00 40.78 4.49
150 151 1.467342 TGTAGACATGACCGAGACACG 59.533 52.381 0.00 0.00 42.18 4.49
151 152 3.784701 ATGTAGACATGACCGAGACAC 57.215 47.619 0.00 0.00 34.83 3.67
152 153 4.524053 ACTATGTAGACATGACCGAGACA 58.476 43.478 0.00 0.00 37.15 3.41
153 154 5.297278 AGAACTATGTAGACATGACCGAGAC 59.703 44.000 0.00 0.00 37.15 3.36
154 155 5.437946 AGAACTATGTAGACATGACCGAGA 58.562 41.667 0.00 0.00 37.15 4.04
155 156 5.559225 CGAGAACTATGTAGACATGACCGAG 60.559 48.000 0.00 0.00 37.15 4.63
156 157 4.272748 CGAGAACTATGTAGACATGACCGA 59.727 45.833 0.00 0.00 37.15 4.69
157 158 4.272748 TCGAGAACTATGTAGACATGACCG 59.727 45.833 0.00 1.67 37.15 4.79
158 159 5.752892 TCGAGAACTATGTAGACATGACC 57.247 43.478 0.00 0.00 37.15 4.02
159 160 5.972382 GGTTCGAGAACTATGTAGACATGAC 59.028 44.000 14.62 0.00 40.94 3.06
160 161 5.067413 GGGTTCGAGAACTATGTAGACATGA 59.933 44.000 14.62 0.00 40.94 3.07
161 162 5.282510 GGGTTCGAGAACTATGTAGACATG 58.717 45.833 14.62 0.00 40.94 3.21
162 163 4.036498 CGGGTTCGAGAACTATGTAGACAT 59.964 45.833 14.62 0.08 40.94 3.06
163 164 3.376234 CGGGTTCGAGAACTATGTAGACA 59.624 47.826 14.62 0.00 40.94 3.41
164 165 3.376546 ACGGGTTCGAGAACTATGTAGAC 59.623 47.826 14.62 0.00 40.94 2.59
165 166 3.614092 ACGGGTTCGAGAACTATGTAGA 58.386 45.455 14.62 0.00 40.94 2.59
166 167 4.024218 CCTACGGGTTCGAGAACTATGTAG 60.024 50.000 21.42 21.42 40.94 2.74
167 168 3.879295 CCTACGGGTTCGAGAACTATGTA 59.121 47.826 14.62 12.83 40.94 2.29
168 169 2.686915 CCTACGGGTTCGAGAACTATGT 59.313 50.000 14.62 12.47 40.94 2.29
169 170 2.034305 CCCTACGGGTTCGAGAACTATG 59.966 54.545 14.62 8.07 40.94 2.23
170 171 2.305009 CCCTACGGGTTCGAGAACTAT 58.695 52.381 14.62 4.68 40.94 2.12
171 172 1.755179 CCCTACGGGTTCGAGAACTA 58.245 55.000 14.62 0.70 40.94 2.24
172 173 2.576298 CCCTACGGGTTCGAGAACT 58.424 57.895 14.62 0.00 40.94 3.01
184 185 2.546645 TTAAGCGTGCGGACCCTACG 62.547 60.000 0.00 10.04 40.52 3.51
185 186 0.390209 TTTAAGCGTGCGGACCCTAC 60.390 55.000 0.00 0.00 0.00 3.18
186 187 0.108520 CTTTAAGCGTGCGGACCCTA 60.109 55.000 0.00 0.00 0.00 3.53
187 188 1.375523 CTTTAAGCGTGCGGACCCT 60.376 57.895 0.00 0.00 0.00 4.34
188 189 1.232621 AACTTTAAGCGTGCGGACCC 61.233 55.000 0.00 0.00 0.00 4.46
189 190 0.589708 AAACTTTAAGCGTGCGGACC 59.410 50.000 0.00 0.00 0.00 4.46
190 191 1.720547 CGAAACTTTAAGCGTGCGGAC 60.721 52.381 0.00 0.00 0.00 4.79
191 192 0.509499 CGAAACTTTAAGCGTGCGGA 59.491 50.000 0.00 0.00 0.00 5.54
192 193 0.509499 TCGAAACTTTAAGCGTGCGG 59.491 50.000 0.00 0.00 0.00 5.69
193 194 2.158143 CATCGAAACTTTAAGCGTGCG 58.842 47.619 0.00 0.00 0.00 5.34
194 195 3.153735 GTCATCGAAACTTTAAGCGTGC 58.846 45.455 0.00 0.00 0.00 5.34
195 196 4.084537 ACTGTCATCGAAACTTTAAGCGTG 60.085 41.667 0.00 0.00 0.00 5.34
196 197 4.056050 ACTGTCATCGAAACTTTAAGCGT 58.944 39.130 0.00 0.00 0.00 5.07
197 198 4.647291 ACTGTCATCGAAACTTTAAGCG 57.353 40.909 0.00 0.00 0.00 4.68
225 226 9.607988 TCGGTACATCAAAACATATAAACTCAT 57.392 29.630 0.00 0.00 0.00 2.90
226 227 9.438228 TTCGGTACATCAAAACATATAAACTCA 57.562 29.630 0.00 0.00 0.00 3.41
227 228 9.916397 CTTCGGTACATCAAAACATATAAACTC 57.084 33.333 0.00 0.00 0.00 3.01
228 229 8.889717 CCTTCGGTACATCAAAACATATAAACT 58.110 33.333 0.00 0.00 0.00 2.66
229 230 8.671028 ACCTTCGGTACATCAAAACATATAAAC 58.329 33.333 0.00 0.00 32.11 2.01
230 231 8.795842 ACCTTCGGTACATCAAAACATATAAA 57.204 30.769 0.00 0.00 32.11 1.40
231 232 9.537192 CTACCTTCGGTACATCAAAACATATAA 57.463 33.333 0.00 0.00 37.09 0.98
232 233 8.698210 ACTACCTTCGGTACATCAAAACATATA 58.302 33.333 0.00 0.00 37.09 0.86
233 234 7.562135 ACTACCTTCGGTACATCAAAACATAT 58.438 34.615 0.00 0.00 37.09 1.78
234 235 6.938507 ACTACCTTCGGTACATCAAAACATA 58.061 36.000 0.00 0.00 37.09 2.29
235 236 5.801380 ACTACCTTCGGTACATCAAAACAT 58.199 37.500 0.00 0.00 37.09 2.71
236 237 5.217978 ACTACCTTCGGTACATCAAAACA 57.782 39.130 0.00 0.00 37.09 2.83
237 238 5.164022 CGAACTACCTTCGGTACATCAAAAC 60.164 44.000 0.00 0.00 46.85 2.43
238 239 4.925054 CGAACTACCTTCGGTACATCAAAA 59.075 41.667 0.00 0.00 46.85 2.44
239 240 4.487948 CGAACTACCTTCGGTACATCAAA 58.512 43.478 0.00 0.00 46.85 2.69
240 241 4.100707 CGAACTACCTTCGGTACATCAA 57.899 45.455 0.00 0.00 46.85 2.57
241 242 3.770263 CGAACTACCTTCGGTACATCA 57.230 47.619 0.00 0.00 46.85 3.07
250 251 1.135170 CCGGGACTTCGAACTACCTTC 60.135 57.143 4.75 0.00 0.00 3.46
251 252 0.893447 CCGGGACTTCGAACTACCTT 59.107 55.000 4.75 0.00 0.00 3.50
252 253 0.038744 TCCGGGACTTCGAACTACCT 59.961 55.000 0.00 0.00 0.00 3.08
253 254 1.109609 ATCCGGGACTTCGAACTACC 58.890 55.000 0.00 0.00 0.00 3.18
254 255 1.475682 ACATCCGGGACTTCGAACTAC 59.524 52.381 0.00 0.00 0.00 2.73
255 256 1.475280 CACATCCGGGACTTCGAACTA 59.525 52.381 0.00 0.00 0.00 2.24
256 257 0.246635 CACATCCGGGACTTCGAACT 59.753 55.000 0.00 0.00 0.00 3.01
257 258 0.245539 TCACATCCGGGACTTCGAAC 59.754 55.000 0.00 0.00 0.00 3.95
258 259 1.136305 GATCACATCCGGGACTTCGAA 59.864 52.381 0.00 0.00 0.00 3.71
259 260 0.744874 GATCACATCCGGGACTTCGA 59.255 55.000 0.00 0.00 0.00 3.71
260 261 0.459899 TGATCACATCCGGGACTTCG 59.540 55.000 0.00 0.00 0.00 3.79
261 262 1.802880 CGTGATCACATCCGGGACTTC 60.803 57.143 24.93 0.00 0.00 3.01
262 263 0.175760 CGTGATCACATCCGGGACTT 59.824 55.000 24.93 0.00 0.00 3.01
263 264 1.676678 CCGTGATCACATCCGGGACT 61.677 60.000 24.93 0.00 38.56 3.85
264 265 1.227263 CCGTGATCACATCCGGGAC 60.227 63.158 24.93 0.00 38.56 4.46
265 266 1.380650 TCCGTGATCACATCCGGGA 60.381 57.895 24.93 18.83 40.88 5.14
266 267 1.227263 GTCCGTGATCACATCCGGG 60.227 63.158 24.93 16.92 40.88 5.73
267 268 0.104855 ATGTCCGTGATCACATCCGG 59.895 55.000 24.93 19.53 41.44 5.14
268 269 1.202405 TCATGTCCGTGATCACATCCG 60.202 52.381 24.93 11.26 30.48 4.18
269 270 2.205074 GTCATGTCCGTGATCACATCC 58.795 52.381 24.93 11.86 30.48 3.51
270 271 1.854743 CGTCATGTCCGTGATCACATC 59.145 52.381 24.93 14.22 30.48 3.06
271 272 1.476488 TCGTCATGTCCGTGATCACAT 59.524 47.619 24.93 8.58 33.29 3.21
272 273 0.885196 TCGTCATGTCCGTGATCACA 59.115 50.000 24.93 6.43 0.00 3.58
273 274 1.550065 CTCGTCATGTCCGTGATCAC 58.450 55.000 16.21 16.21 0.00 3.06
274 275 0.455815 CCTCGTCATGTCCGTGATCA 59.544 55.000 0.00 0.00 0.00 2.92
275 276 0.738975 TCCTCGTCATGTCCGTGATC 59.261 55.000 9.87 0.00 0.00 2.92
276 277 0.741326 CTCCTCGTCATGTCCGTGAT 59.259 55.000 9.87 0.00 0.00 3.06
277 278 0.608308 ACTCCTCGTCATGTCCGTGA 60.608 55.000 9.87 6.71 0.00 4.35
278 279 0.179161 GACTCCTCGTCATGTCCGTG 60.179 60.000 7.27 5.40 42.37 4.94
279 280 0.322636 AGACTCCTCGTCATGTCCGT 60.323 55.000 7.27 0.00 45.32 4.69
280 281 0.378962 GAGACTCCTCGTCATGTCCG 59.621 60.000 0.00 0.00 45.32 4.79
290 291 3.193691 TCTCAACCATTTCGAGACTCCTC 59.806 47.826 0.00 0.00 36.08 3.71
291 292 3.165875 TCTCAACCATTTCGAGACTCCT 58.834 45.455 0.00 0.00 30.94 3.69
292 293 3.594603 TCTCAACCATTTCGAGACTCC 57.405 47.619 0.00 0.00 30.94 3.85
296 297 4.535526 TCATGTCTCAACCATTTCGAGA 57.464 40.909 0.00 0.00 33.46 4.04
297 298 4.931601 TCTTCATGTCTCAACCATTTCGAG 59.068 41.667 0.00 0.00 0.00 4.04
298 299 4.893608 TCTTCATGTCTCAACCATTTCGA 58.106 39.130 0.00 0.00 0.00 3.71
299 300 5.808042 ATCTTCATGTCTCAACCATTTCG 57.192 39.130 0.00 0.00 0.00 3.46
300 301 7.149569 TCAATCTTCATGTCTCAACCATTTC 57.850 36.000 0.00 0.00 0.00 2.17
301 302 7.713734 ATCAATCTTCATGTCTCAACCATTT 57.286 32.000 0.00 0.00 0.00 2.32
302 303 8.991783 ATATCAATCTTCATGTCTCAACCATT 57.008 30.769 0.00 0.00 0.00 3.16
308 309 9.716531 GTCCAATATATCAATCTTCATGTCTCA 57.283 33.333 0.00 0.00 0.00 3.27
309 310 8.867935 CGTCCAATATATCAATCTTCATGTCTC 58.132 37.037 0.00 0.00 0.00 3.36
310 311 8.588472 TCGTCCAATATATCAATCTTCATGTCT 58.412 33.333 0.00 0.00 0.00 3.41
311 312 8.651588 GTCGTCCAATATATCAATCTTCATGTC 58.348 37.037 0.00 0.00 0.00 3.06
312 313 8.370940 AGTCGTCCAATATATCAATCTTCATGT 58.629 33.333 0.00 0.00 0.00 3.21
313 314 8.768957 AGTCGTCCAATATATCAATCTTCATG 57.231 34.615 0.00 0.00 0.00 3.07
320 321 9.967346 CCGAATATAGTCGTCCAATATATCAAT 57.033 33.333 19.91 0.00 39.43 2.57
321 322 9.181061 TCCGAATATAGTCGTCCAATATATCAA 57.819 33.333 19.91 0.00 39.43 2.57
322 323 8.618677 GTCCGAATATAGTCGTCCAATATATCA 58.381 37.037 19.91 0.00 39.43 2.15
323 324 8.618677 TGTCCGAATATAGTCGTCCAATATATC 58.381 37.037 19.91 1.08 39.43 1.63
324 325 8.404000 GTGTCCGAATATAGTCGTCCAATATAT 58.596 37.037 19.91 0.00 39.43 0.86
325 326 7.148188 GGTGTCCGAATATAGTCGTCCAATATA 60.148 40.741 19.91 0.00 39.43 0.86
326 327 6.349944 GGTGTCCGAATATAGTCGTCCAATAT 60.350 42.308 19.91 0.00 39.43 1.28
327 328 5.048504 GGTGTCCGAATATAGTCGTCCAATA 60.049 44.000 19.91 0.48 39.43 1.90
328 329 4.261909 GGTGTCCGAATATAGTCGTCCAAT 60.262 45.833 19.91 0.00 39.43 3.16
329 330 3.067180 GGTGTCCGAATATAGTCGTCCAA 59.933 47.826 19.91 1.77 39.43 3.53
330 331 2.620115 GGTGTCCGAATATAGTCGTCCA 59.380 50.000 19.91 13.12 39.43 4.02
331 332 3.279853 GGTGTCCGAATATAGTCGTCC 57.720 52.381 19.91 12.77 39.43 4.79
352 353 0.554305 ATAACCCCCGGAACCATTCC 59.446 55.000 0.73 0.00 46.62 3.01
353 354 1.812708 CGATAACCCCCGGAACCATTC 60.813 57.143 0.73 0.00 0.00 2.67
354 355 0.181824 CGATAACCCCCGGAACCATT 59.818 55.000 0.73 0.00 0.00 3.16
355 356 1.834301 CGATAACCCCCGGAACCAT 59.166 57.895 0.73 0.00 0.00 3.55
356 357 3.311725 CGATAACCCCCGGAACCA 58.688 61.111 0.73 0.00 0.00 3.67
361 362 3.575687 GGTATATATCCGATAACCCCCGG 59.424 52.174 0.00 0.00 46.57 5.73
362 363 4.217510 TGGTATATATCCGATAACCCCCG 58.782 47.826 5.61 0.00 0.00 5.73
363 364 5.461327 TCTGGTATATATCCGATAACCCCC 58.539 45.833 5.61 0.14 0.00 5.40
364 365 6.134754 ACTCTGGTATATATCCGATAACCCC 58.865 44.000 5.61 0.00 0.00 4.95
365 366 7.230309 GGTACTCTGGTATATATCCGATAACCC 59.770 44.444 5.61 0.00 0.00 4.11
366 367 7.041508 CGGTACTCTGGTATATATCCGATAACC 60.042 44.444 0.00 7.64 35.77 2.85
367 368 7.041508 CCGGTACTCTGGTATATATCCGATAAC 60.042 44.444 0.00 0.00 35.77 1.89
368 369 6.994496 CCGGTACTCTGGTATATATCCGATAA 59.006 42.308 0.00 0.00 35.77 1.75
369 370 6.464892 CCCGGTACTCTGGTATATATCCGATA 60.465 46.154 0.00 0.00 35.77 2.92
370 371 5.374921 CCGGTACTCTGGTATATATCCGAT 58.625 45.833 0.00 0.00 35.77 4.18
371 372 4.384537 CCCGGTACTCTGGTATATATCCGA 60.385 50.000 0.00 0.00 35.77 4.55
372 373 3.881688 CCCGGTACTCTGGTATATATCCG 59.118 52.174 0.00 0.00 38.38 4.18
373 374 4.213513 CCCCGGTACTCTGGTATATATCC 58.786 52.174 0.00 0.00 38.38 2.59
374 375 4.213513 CCCCCGGTACTCTGGTATATATC 58.786 52.174 0.00 0.00 38.38 1.63
375 376 3.599698 ACCCCCGGTACTCTGGTATATAT 59.400 47.826 0.00 0.00 38.38 0.86
376 377 2.996021 ACCCCCGGTACTCTGGTATATA 59.004 50.000 0.00 0.00 38.38 0.86
377 378 1.791402 ACCCCCGGTACTCTGGTATAT 59.209 52.381 0.00 0.00 38.38 0.86
378 379 1.234806 ACCCCCGGTACTCTGGTATA 58.765 55.000 0.00 0.00 38.38 1.47
379 380 0.340908 AACCCCCGGTACTCTGGTAT 59.659 55.000 0.00 0.00 38.38 2.73
380 381 1.006813 TAACCCCCGGTACTCTGGTA 58.993 55.000 0.00 0.00 38.38 3.25
381 382 0.615827 GTAACCCCCGGTACTCTGGT 60.616 60.000 0.00 0.00 38.38 4.00
382 383 1.332889 GGTAACCCCCGGTACTCTGG 61.333 65.000 0.00 0.00 33.12 3.86
383 384 1.669999 CGGTAACCCCCGGTACTCTG 61.670 65.000 0.00 0.00 44.32 3.35
384 385 1.380380 CGGTAACCCCCGGTACTCT 60.380 63.158 0.00 0.00 44.32 3.24
385 386 3.210302 CGGTAACCCCCGGTACTC 58.790 66.667 0.00 0.00 44.32 2.59
411 412 0.930726 TAGGCCCATTAAACCCCTGG 59.069 55.000 0.00 0.00 0.00 4.45
412 413 1.286553 TGTAGGCCCATTAAACCCCTG 59.713 52.381 0.00 0.00 0.00 4.45
413 414 1.688750 TGTAGGCCCATTAAACCCCT 58.311 50.000 0.00 0.00 0.00 4.79
414 415 2.316108 CATGTAGGCCCATTAAACCCC 58.684 52.381 0.00 0.00 0.00 4.95
415 416 2.316108 CCATGTAGGCCCATTAAACCC 58.684 52.381 0.00 0.00 0.00 4.11
416 417 2.316108 CCCATGTAGGCCCATTAAACC 58.684 52.381 0.00 0.00 35.39 3.27
427 428 2.224066 CGAAGTAGAAGGCCCATGTAGG 60.224 54.545 0.00 0.00 37.03 3.18
428 429 2.693591 TCGAAGTAGAAGGCCCATGTAG 59.306 50.000 0.00 0.00 0.00 2.74
429 430 2.429610 GTCGAAGTAGAAGGCCCATGTA 59.570 50.000 0.00 0.00 0.00 2.29
430 431 1.207329 GTCGAAGTAGAAGGCCCATGT 59.793 52.381 0.00 0.00 0.00 3.21
431 432 1.207089 TGTCGAAGTAGAAGGCCCATG 59.793 52.381 0.00 0.00 0.00 3.66
432 433 1.568504 TGTCGAAGTAGAAGGCCCAT 58.431 50.000 0.00 0.00 0.00 4.00
433 434 1.001633 GTTGTCGAAGTAGAAGGCCCA 59.998 52.381 0.00 0.00 0.00 5.36
434 435 1.001633 TGTTGTCGAAGTAGAAGGCCC 59.998 52.381 0.00 0.00 0.00 5.80
435 436 2.450609 TGTTGTCGAAGTAGAAGGCC 57.549 50.000 0.00 0.00 0.00 5.19
436 437 3.368236 GTGATGTTGTCGAAGTAGAAGGC 59.632 47.826 0.00 0.00 0.00 4.35
437 438 3.927142 GGTGATGTTGTCGAAGTAGAAGG 59.073 47.826 0.00 0.00 0.00 3.46
438 439 3.927142 GGGTGATGTTGTCGAAGTAGAAG 59.073 47.826 0.00 0.00 0.00 2.85
439 440 3.576982 AGGGTGATGTTGTCGAAGTAGAA 59.423 43.478 0.00 0.00 0.00 2.10
440 441 3.162666 AGGGTGATGTTGTCGAAGTAGA 58.837 45.455 0.00 0.00 0.00 2.59
441 442 3.594603 AGGGTGATGTTGTCGAAGTAG 57.405 47.619 0.00 0.00 0.00 2.57
442 443 3.659786 CAAGGGTGATGTTGTCGAAGTA 58.340 45.455 0.00 0.00 0.00 2.24
443 444 2.494059 CAAGGGTGATGTTGTCGAAGT 58.506 47.619 0.00 0.00 0.00 3.01
444 445 1.197721 GCAAGGGTGATGTTGTCGAAG 59.802 52.381 0.00 0.00 0.00 3.79
445 446 1.234821 GCAAGGGTGATGTTGTCGAA 58.765 50.000 0.00 0.00 0.00 3.71
446 447 0.107643 TGCAAGGGTGATGTTGTCGA 59.892 50.000 0.00 0.00 0.00 4.20
447 448 1.131126 GATGCAAGGGTGATGTTGTCG 59.869 52.381 0.00 0.00 0.00 4.35
448 449 2.095059 GTGATGCAAGGGTGATGTTGTC 60.095 50.000 0.00 0.00 0.00 3.18
449 450 1.888512 GTGATGCAAGGGTGATGTTGT 59.111 47.619 0.00 0.00 0.00 3.32
450 451 1.135603 CGTGATGCAAGGGTGATGTTG 60.136 52.381 0.00 0.00 0.00 3.33
451 452 1.167851 CGTGATGCAAGGGTGATGTT 58.832 50.000 0.00 0.00 0.00 2.71
452 453 1.308069 GCGTGATGCAAGGGTGATGT 61.308 55.000 0.00 0.00 45.45 3.06
453 454 1.430632 GCGTGATGCAAGGGTGATG 59.569 57.895 0.00 0.00 45.45 3.07
454 455 3.909662 GCGTGATGCAAGGGTGAT 58.090 55.556 0.00 0.00 45.45 3.06
464 465 2.557059 TACTCGGTGCAGGCGTGATG 62.557 60.000 11.29 0.00 0.00 3.07
465 466 2.284798 CTACTCGGTGCAGGCGTGAT 62.285 60.000 11.29 0.00 0.00 3.06
466 467 2.986979 TACTCGGTGCAGGCGTGA 60.987 61.111 11.29 0.00 0.00 4.35
467 468 2.507102 CTACTCGGTGCAGGCGTG 60.507 66.667 1.01 1.01 0.00 5.34
468 469 3.760035 CCTACTCGGTGCAGGCGT 61.760 66.667 0.00 0.00 0.00 5.68
471 472 2.685387 GATCGCCTACTCGGTGCAGG 62.685 65.000 0.00 0.00 43.21 4.85
472 473 1.299468 GATCGCCTACTCGGTGCAG 60.299 63.158 0.00 0.00 43.21 4.41
473 474 1.391933 ATGATCGCCTACTCGGTGCA 61.392 55.000 0.00 0.00 43.21 4.57
474 475 0.941463 CATGATCGCCTACTCGGTGC 60.941 60.000 0.00 0.00 43.21 5.01
475 476 0.385751 ACATGATCGCCTACTCGGTG 59.614 55.000 0.00 0.00 44.95 4.94
476 477 0.669077 GACATGATCGCCTACTCGGT 59.331 55.000 0.00 0.00 34.25 4.69
477 478 0.039074 GGACATGATCGCCTACTCGG 60.039 60.000 0.00 0.00 0.00 4.63
478 479 0.668535 TGGACATGATCGCCTACTCG 59.331 55.000 0.00 0.00 0.00 4.18
479 480 1.683917 AGTGGACATGATCGCCTACTC 59.316 52.381 0.00 0.00 0.00 2.59
480 481 1.781786 AGTGGACATGATCGCCTACT 58.218 50.000 0.00 0.00 0.00 2.57
481 482 2.101582 AGAAGTGGACATGATCGCCTAC 59.898 50.000 0.00 0.00 0.00 3.18
482 483 2.101415 CAGAAGTGGACATGATCGCCTA 59.899 50.000 0.00 0.00 0.00 3.93
483 484 1.134580 CAGAAGTGGACATGATCGCCT 60.135 52.381 0.00 0.00 0.00 5.52
484 485 1.293924 CAGAAGTGGACATGATCGCC 58.706 55.000 0.00 0.00 0.00 5.54
485 486 1.662629 CACAGAAGTGGACATGATCGC 59.337 52.381 0.00 0.00 42.13 4.58
486 487 2.926200 GTCACAGAAGTGGACATGATCG 59.074 50.000 0.00 0.00 45.91 3.69
487 488 3.930336 TGTCACAGAAGTGGACATGATC 58.070 45.455 0.00 0.00 45.91 2.92
488 489 4.564782 ATGTCACAGAAGTGGACATGAT 57.435 40.909 0.00 0.00 45.91 2.45
491 492 3.777106 ACATGTCACAGAAGTGGACAT 57.223 42.857 0.00 0.00 45.91 3.06
492 493 4.681074 TTACATGTCACAGAAGTGGACA 57.319 40.909 0.00 0.00 45.91 4.02
493 494 4.452455 CCTTTACATGTCACAGAAGTGGAC 59.548 45.833 0.00 0.00 45.91 4.02
494 495 4.346709 TCCTTTACATGTCACAGAAGTGGA 59.653 41.667 0.00 0.16 45.91 4.02
495 496 4.641396 TCCTTTACATGTCACAGAAGTGG 58.359 43.478 0.00 0.00 45.91 4.00
497 498 5.491982 GGATCCTTTACATGTCACAGAAGT 58.508 41.667 0.00 0.00 0.00 3.01
498 499 4.878397 GGGATCCTTTACATGTCACAGAAG 59.122 45.833 12.58 0.50 0.00 2.85
499 500 4.536090 AGGGATCCTTTACATGTCACAGAA 59.464 41.667 12.58 0.00 0.00 3.02
500 501 4.104086 AGGGATCCTTTACATGTCACAGA 58.896 43.478 12.58 0.00 0.00 3.41
501 502 4.494091 AGGGATCCTTTACATGTCACAG 57.506 45.455 12.58 0.00 0.00 3.66
502 503 6.177610 GTTTAGGGATCCTTTACATGTCACA 58.822 40.000 12.58 0.00 34.61 3.58
503 504 5.589050 GGTTTAGGGATCCTTTACATGTCAC 59.411 44.000 12.58 0.00 34.61 3.67
504 505 5.339695 GGGTTTAGGGATCCTTTACATGTCA 60.340 44.000 12.58 0.00 34.61 3.58
505 506 5.104067 AGGGTTTAGGGATCCTTTACATGTC 60.104 44.000 12.58 0.00 34.61 3.06
506 507 4.794067 AGGGTTTAGGGATCCTTTACATGT 59.206 41.667 12.58 2.69 34.61 3.21
507 508 5.388599 AGGGTTTAGGGATCCTTTACATG 57.611 43.478 12.58 0.00 34.61 3.21
508 509 5.736616 AGAAGGGTTTAGGGATCCTTTACAT 59.263 40.000 12.58 0.00 39.46 2.29
509 510 5.105853 AGAAGGGTTTAGGGATCCTTTACA 58.894 41.667 12.58 0.00 39.46 2.41
510 511 5.429109 AGAGAAGGGTTTAGGGATCCTTTAC 59.571 44.000 12.58 6.02 39.46 2.01
511 512 5.428783 CAGAGAAGGGTTTAGGGATCCTTTA 59.571 44.000 12.58 1.95 39.46 1.85
512 513 4.228438 CAGAGAAGGGTTTAGGGATCCTTT 59.772 45.833 12.58 3.00 39.46 3.11
513 514 3.783082 CAGAGAAGGGTTTAGGGATCCTT 59.217 47.826 12.58 6.67 41.78 3.36
514 515 3.246535 ACAGAGAAGGGTTTAGGGATCCT 60.247 47.826 12.58 0.00 37.71 3.24
515 516 3.116174 ACAGAGAAGGGTTTAGGGATCC 58.884 50.000 1.92 1.92 0.00 3.36
516 517 4.846168 AACAGAGAAGGGTTTAGGGATC 57.154 45.455 0.00 0.00 0.00 3.36
517 518 6.217693 ACATAAACAGAGAAGGGTTTAGGGAT 59.782 38.462 11.84 0.00 42.39 3.85
518 519 5.550403 ACATAAACAGAGAAGGGTTTAGGGA 59.450 40.000 11.84 0.00 42.39 4.20
519 520 5.816682 ACATAAACAGAGAAGGGTTTAGGG 58.183 41.667 11.84 5.86 42.39 3.53
523 524 9.462606 CCTTATAACATAAACAGAGAAGGGTTT 57.537 33.333 0.00 0.00 40.15 3.27
524 525 8.612145 ACCTTATAACATAAACAGAGAAGGGTT 58.388 33.333 0.00 0.00 36.14 4.11
525 526 8.047310 CACCTTATAACATAAACAGAGAAGGGT 58.953 37.037 0.00 0.00 36.14 4.34
526 527 8.265055 TCACCTTATAACATAAACAGAGAAGGG 58.735 37.037 0.00 0.00 36.14 3.95
527 528 9.838339 ATCACCTTATAACATAAACAGAGAAGG 57.162 33.333 0.00 0.00 37.53 3.46
540 541 9.851686 AAATTGCATCTAGATCACCTTATAACA 57.148 29.630 1.03 0.00 0.00 2.41
544 545 9.228949 GATCAAATTGCATCTAGATCACCTTAT 57.771 33.333 1.03 0.00 33.80 1.73
545 546 7.663081 GGATCAAATTGCATCTAGATCACCTTA 59.337 37.037 1.03 0.00 34.94 2.69
546 547 6.489361 GGATCAAATTGCATCTAGATCACCTT 59.511 38.462 1.03 0.00 34.94 3.50
547 548 6.002704 GGATCAAATTGCATCTAGATCACCT 58.997 40.000 1.03 0.00 34.94 4.00
548 549 6.002704 AGGATCAAATTGCATCTAGATCACC 58.997 40.000 1.03 1.08 34.94 4.02
549 550 6.568081 GCAGGATCAAATTGCATCTAGATCAC 60.568 42.308 1.03 0.00 37.75 3.06
550 551 5.472478 GCAGGATCAAATTGCATCTAGATCA 59.528 40.000 1.03 1.64 37.75 2.92
551 552 5.706369 AGCAGGATCAAATTGCATCTAGATC 59.294 40.000 1.03 9.82 40.22 2.75
552 553 5.632118 AGCAGGATCAAATTGCATCTAGAT 58.368 37.500 0.00 0.00 40.22 1.98
553 554 5.045012 AGCAGGATCAAATTGCATCTAGA 57.955 39.130 0.00 0.00 40.22 2.43
554 555 6.872628 TTAGCAGGATCAAATTGCATCTAG 57.127 37.500 11.57 0.00 40.22 2.43
555 556 6.208007 CCATTAGCAGGATCAAATTGCATCTA 59.792 38.462 11.57 0.00 40.22 1.98
556 557 5.010719 CCATTAGCAGGATCAAATTGCATCT 59.989 40.000 11.57 0.00 40.22 2.90
557 558 5.227908 CCATTAGCAGGATCAAATTGCATC 58.772 41.667 11.57 0.00 40.22 3.91
558 559 4.502604 GCCATTAGCAGGATCAAATTGCAT 60.503 41.667 11.57 2.63 42.97 3.96
559 560 3.181473 GCCATTAGCAGGATCAAATTGCA 60.181 43.478 11.57 0.00 42.97 4.08
560 561 3.387397 GCCATTAGCAGGATCAAATTGC 58.613 45.455 0.00 0.00 42.97 3.56
573 574 2.205022 TATGCTGGGATGCCATTAGC 57.795 50.000 6.34 7.80 44.14 3.09
574 575 5.533903 GGATAATATGCTGGGATGCCATTAG 59.466 44.000 6.34 0.00 0.00 1.73
575 576 5.044254 TGGATAATATGCTGGGATGCCATTA 60.044 40.000 6.34 2.24 0.00 1.90
576 577 4.264487 TGGATAATATGCTGGGATGCCATT 60.264 41.667 6.34 0.00 0.00 3.16
577 578 3.270169 TGGATAATATGCTGGGATGCCAT 59.730 43.478 6.34 0.00 0.00 4.40
578 579 2.648808 TGGATAATATGCTGGGATGCCA 59.351 45.455 5.57 5.57 0.00 4.92
579 580 3.370840 TGGATAATATGCTGGGATGCC 57.629 47.619 0.00 0.00 0.00 4.40
580 581 4.081406 TGTTGGATAATATGCTGGGATGC 58.919 43.478 0.00 0.00 0.00 3.91
581 582 4.157289 GCTGTTGGATAATATGCTGGGATG 59.843 45.833 0.00 0.00 0.00 3.51
582 583 4.338879 GCTGTTGGATAATATGCTGGGAT 58.661 43.478 0.00 0.00 0.00 3.85
583 584 3.498481 GGCTGTTGGATAATATGCTGGGA 60.498 47.826 0.00 0.00 0.00 4.37
584 585 2.821969 GGCTGTTGGATAATATGCTGGG 59.178 50.000 0.00 0.00 0.00 4.45
585 586 3.254166 GTGGCTGTTGGATAATATGCTGG 59.746 47.826 0.00 0.00 0.00 4.85
586 587 3.884693 TGTGGCTGTTGGATAATATGCTG 59.115 43.478 0.00 0.00 0.00 4.41
587 588 4.169059 TGTGGCTGTTGGATAATATGCT 57.831 40.909 0.00 0.00 0.00 3.79
588 589 4.321452 CCATGTGGCTGTTGGATAATATGC 60.321 45.833 0.00 0.00 31.94 3.14
589 590 5.381174 CCATGTGGCTGTTGGATAATATG 57.619 43.478 0.00 0.00 31.94 1.78
604 605 1.214589 GCTCTGCTTTGCCATGTGG 59.785 57.895 0.00 0.00 38.53 4.17
605 606 4.883026 GCTCTGCTTTGCCATGTG 57.117 55.556 0.00 0.00 0.00 3.21
616 617 1.893919 AACTTCCTCGAGGGCTCTGC 61.894 60.000 30.80 0.00 35.41 4.26
651 652 2.468670 GCATCCGCGCACATACCAA 61.469 57.895 8.75 0.00 0.00 3.67
746 2441 0.395724 TGAGATGACGGGAGCTAGCA 60.396 55.000 18.83 0.00 0.00 3.49
758 2486 2.203082 CGGCCGGGAGATGAGATGA 61.203 63.158 20.10 0.00 0.00 2.92
760 2488 1.749334 GAACGGCCGGGAGATGAGAT 61.749 60.000 31.76 0.00 0.00 2.75
761 2489 2.363795 AACGGCCGGGAGATGAGA 60.364 61.111 31.76 0.00 0.00 3.27
762 2490 2.107141 GAACGGCCGGGAGATGAG 59.893 66.667 31.76 0.00 0.00 2.90
764 2492 4.143333 ACGAACGGCCGGGAGATG 62.143 66.667 31.76 14.86 0.00 2.90
765 2493 4.143333 CACGAACGGCCGGGAGAT 62.143 66.667 31.76 9.89 34.30 2.75
787 2515 4.435436 ATTCTGGCGTCGCTGCGA 62.435 61.111 22.24 22.24 35.06 5.10
788 2516 3.918220 GATTCTGGCGTCGCTGCG 61.918 66.667 17.25 17.25 35.06 5.18
789 2517 3.567797 GGATTCTGGCGTCGCTGC 61.568 66.667 18.11 1.39 0.00 5.25
790 2518 3.257561 CGGATTCTGGCGTCGCTG 61.258 66.667 18.11 10.58 0.00 5.18
791 2519 4.514577 CCGGATTCTGGCGTCGCT 62.515 66.667 18.11 0.00 0.00 4.93
825 2553 4.025401 GTGGCGGTGCAACGAAGG 62.025 66.667 31.65 0.00 38.12 3.46
1080 2872 2.840753 GGGGTGGTTGCAGAAGGGA 61.841 63.158 0.00 0.00 0.00 4.20
1429 3292 0.309302 CGATCAGGACTACAGGCTCG 59.691 60.000 0.00 0.00 0.00 5.03
1554 3430 5.199479 CAGGTACTCTCGTCGGTCGAAAA 62.199 52.174 0.00 0.00 43.10 2.29
1603 3481 6.524101 TTTTCTAAAGACAACAAGGTGCTT 57.476 33.333 0.00 0.00 0.00 3.91
1825 3711 1.003580 ACGTCATTGCTGGGTTCAGAT 59.996 47.619 0.00 0.00 43.49 2.90
2233 4146 7.066645 GGTTTGTGAGGTAGACAACTTAAAAGT 59.933 37.037 0.00 0.00 42.04 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.