Multiple sequence alignment - TraesCS7D01G111900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G111900 chr7D 100.000 4990 0 0 1 4990 68800748 68795759 0.000000e+00 9215
1 TraesCS7D01G111900 chr7D 100.000 2548 0 0 5224 7771 68795525 68792978 0.000000e+00 4706
2 TraesCS7D01G111900 chr7D 99.181 733 5 1 1038 1770 95045584 95044853 0.000000e+00 1319
3 TraesCS7D01G111900 chr7D 100.000 285 0 0 3152 3436 95044857 95044573 1.920000e-145 527
4 TraesCS7D01G111900 chr7D 93.701 127 6 2 2741 2867 64732152 64732028 1.030000e-43 189
5 TraesCS7D01G111900 chr7D 96.000 100 0 3 3864 3960 95044587 95044489 8.070000e-35 159
6 TraesCS7D01G111900 chr4D 98.922 1762 18 1 1038 2799 80283403 80281643 0.000000e+00 3147
7 TraesCS7D01G111900 chr4D 98.541 754 8 2 1038 1791 154782158 154781408 0.000000e+00 1328
8 TraesCS7D01G111900 chr4D 98.973 292 1 2 2860 3150 80281646 80281356 8.940000e-144 521
9 TraesCS7D01G111900 chr4D 91.538 130 9 2 2728 2857 72256119 72256246 2.230000e-40 178
10 TraesCS7D01G111900 chr1D 99.254 1609 10 2 1038 2645 416569974 416568367 0.000000e+00 2904
11 TraesCS7D01G111900 chr1D 98.913 1380 14 1 1035 2414 186664023 186665401 0.000000e+00 2464
12 TraesCS7D01G111900 chr1D 99.202 501 4 0 5224 5724 416567871 416567371 0.000000e+00 904
13 TraesCS7D01G111900 chr1D 99.200 375 3 0 5350 5724 186665398 186665772 0.000000e+00 676
14 TraesCS7D01G111900 chr1D 99.721 358 0 1 3080 3436 416568377 416568020 0.000000e+00 654
15 TraesCS7D01G111900 chr1D 96.000 100 0 3 3864 3960 416568034 416567936 8.070000e-35 159
16 TraesCS7D01G111900 chr7A 92.546 1583 68 16 498 2039 71135695 71137268 0.000000e+00 2224
17 TraesCS7D01G111900 chr7A 89.505 1353 89 15 5246 6551 71140425 71141771 0.000000e+00 1663
18 TraesCS7D01G111900 chr7A 94.427 969 41 13 3030 3991 71138275 71139237 0.000000e+00 1478
19 TraesCS7D01G111900 chr7A 96.879 705 22 0 2038 2742 71137350 71138054 0.000000e+00 1181
20 TraesCS7D01G111900 chr7A 85.647 1059 64 21 3990 4990 71139341 71140369 0.000000e+00 1033
21 TraesCS7D01G111900 chr7A 84.516 1085 77 50 6585 7626 71141773 71142809 0.000000e+00 989
22 TraesCS7D01G111900 chr7A 93.264 193 12 1 2854 3045 71138051 71138243 4.590000e-72 283
23 TraesCS7D01G111900 chr7B 92.559 1532 69 11 5246 6748 9756052 9754537 0.000000e+00 2156
24 TraesCS7D01G111900 chr7B 89.369 1712 102 32 13 1663 9760912 9759220 0.000000e+00 2080
25 TraesCS7D01G111900 chr7B 86.611 1927 157 44 3044 4909 9757949 9756063 0.000000e+00 2036
26 TraesCS7D01G111900 chr7B 94.659 1011 43 5 1742 2742 9759190 9758181 0.000000e+00 1557
27 TraesCS7D01G111900 chr7B 82.874 1016 77 43 6798 7771 9754528 9753568 0.000000e+00 822
28 TraesCS7D01G111900 chr2D 97.665 728 14 3 1043 1768 602303699 602302973 0.000000e+00 1247
29 TraesCS7D01G111900 chr2D 99.240 658 5 0 1850 2507 193772632 193773289 0.000000e+00 1188
30 TraesCS7D01G111900 chr2D 99.088 658 6 0 1850 2507 553840956 553841613 0.000000e+00 1182
31 TraesCS7D01G111900 chr2D 98.864 616 6 1 1038 1653 20042432 20041818 0.000000e+00 1098
32 TraesCS7D01G111900 chr2D 98.787 577 7 0 2860 3436 193773514 193774090 0.000000e+00 1027
33 TraesCS7D01G111900 chr2D 99.401 501 3 0 5224 5724 553842071 553842571 0.000000e+00 909
34 TraesCS7D01G111900 chr2D 99.202 501 4 0 5224 5724 193774239 193774739 0.000000e+00 904
35 TraesCS7D01G111900 chr2D 99.002 501 5 0 5224 5724 20041488 20040988 0.000000e+00 898
36 TraesCS7D01G111900 chr2D 99.306 288 1 1 2888 3174 602302975 602302688 3.210000e-143 520
37 TraesCS7D01G111900 chr2D 98.966 290 2 1 3148 3436 553841633 553841922 1.160000e-142 518
38 TraesCS7D01G111900 chr2D 98.712 233 3 0 2567 2799 193773285 193773517 1.560000e-111 414
39 TraesCS7D01G111900 chr2D 91.935 124 10 0 2741 2864 381869624 381869747 2.880000e-39 174
40 TraesCS7D01G111900 chr2D 96.000 100 0 3 3864 3960 553841908 553842006 8.070000e-35 159
41 TraesCS7D01G111900 chr2D 96.000 100 0 3 3864 3960 602302568 602302470 8.070000e-35 159
42 TraesCS7D01G111900 chr5D 99.544 658 3 0 1850 2507 50538949 50539606 0.000000e+00 1199
43 TraesCS7D01G111900 chr5D 99.240 658 5 0 1850 2507 65372238 65371581 0.000000e+00 1188
44 TraesCS7D01G111900 chr5D 98.960 577 5 1 2860 3436 50539831 50540406 0.000000e+00 1031
45 TraesCS7D01G111900 chr5D 98.094 577 5 3 2860 3436 65371356 65370786 0.000000e+00 1000
46 TraesCS7D01G111900 chr5D 99.002 501 5 0 5224 5724 65370637 65370137 0.000000e+00 898
47 TraesCS7D01G111900 chr5D 97.405 501 3 2 5224 5724 50540558 50541048 0.000000e+00 845
48 TraesCS7D01G111900 chr5D 99.142 233 2 0 2567 2799 50539602 50539834 3.350000e-113 420
49 TraesCS7D01G111900 chr5D 98.696 230 3 0 2570 2799 65371582 65371353 7.260000e-110 409
50 TraesCS7D01G111900 chr5D 96.000 100 0 3 3864 3960 147622520 147622422 8.070000e-35 159
51 TraesCS7D01G111900 chr5D 95.000 100 1 3 3864 3960 65370800 65370702 3.750000e-33 154
52 TraesCS7D01G111900 chr6D 98.485 660 4 2 1850 2507 337781119 337781774 0.000000e+00 1158
53 TraesCS7D01G111900 chr6D 99.401 501 3 0 5224 5724 337782250 337782750 0.000000e+00 909
54 TraesCS7D01G111900 chr6D 98.844 173 2 0 2572 2744 337781787 337781959 7.570000e-80 309
55 TraesCS7D01G111900 chr3D 98.947 285 3 0 3152 3436 88944235 88943951 1.930000e-140 510
56 TraesCS7D01G111900 chr3D 96.000 100 0 3 3864 3960 88943965 88943867 8.070000e-35 159
57 TraesCS7D01G111900 chr3B 94.915 118 6 0 2740 2857 637086328 637086445 1.330000e-42 185
58 TraesCS7D01G111900 chr3B 92.742 124 9 0 2741 2864 620662913 620662790 6.200000e-41 180
59 TraesCS7D01G111900 chr2B 92.248 129 9 1 2730 2858 113275149 113275276 1.720000e-41 182
60 TraesCS7D01G111900 chr1B 91.406 128 9 2 2739 2865 517499689 517499815 2.880000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G111900 chr7D 68792978 68800748 7770 True 6960.500000 9215 100.000000 1 7771 2 chr7D.!!$R2 7770
1 TraesCS7D01G111900 chr7D 95044489 95045584 1095 True 668.333333 1319 98.393667 1038 3960 3 chr7D.!!$R3 2922
2 TraesCS7D01G111900 chr4D 80281356 80283403 2047 True 1834.000000 3147 98.947500 1038 3150 2 chr4D.!!$R2 2112
3 TraesCS7D01G111900 chr4D 154781408 154782158 750 True 1328.000000 1328 98.541000 1038 1791 1 chr4D.!!$R1 753
4 TraesCS7D01G111900 chr1D 186664023 186665772 1749 False 1570.000000 2464 99.056500 1035 5724 2 chr1D.!!$F1 4689
5 TraesCS7D01G111900 chr1D 416567371 416569974 2603 True 1155.250000 2904 98.544250 1038 5724 4 chr1D.!!$R1 4686
6 TraesCS7D01G111900 chr7A 71135695 71142809 7114 False 1264.428571 2224 90.969143 498 7626 7 chr7A.!!$F1 7128
7 TraesCS7D01G111900 chr7B 9753568 9760912 7344 True 1730.200000 2156 89.214400 13 7771 5 chr7B.!!$R1 7758
8 TraesCS7D01G111900 chr2D 20040988 20042432 1444 True 998.000000 1098 98.933000 1038 5724 2 chr2D.!!$R1 4686
9 TraesCS7D01G111900 chr2D 193772632 193774739 2107 False 883.250000 1188 98.985250 1850 5724 4 chr2D.!!$F2 3874
10 TraesCS7D01G111900 chr2D 553840956 553842571 1615 False 692.000000 1182 98.363750 1850 5724 4 chr2D.!!$F3 3874
11 TraesCS7D01G111900 chr2D 602302470 602303699 1229 True 642.000000 1247 97.657000 1043 3960 3 chr2D.!!$R2 2917
12 TraesCS7D01G111900 chr5D 50538949 50541048 2099 False 873.750000 1199 98.762750 1850 5724 4 chr5D.!!$F1 3874
13 TraesCS7D01G111900 chr5D 65370137 65372238 2101 True 729.800000 1188 98.006400 1850 5724 5 chr5D.!!$R2 3874
14 TraesCS7D01G111900 chr6D 337781119 337782750 1631 False 792.000000 1158 98.910000 1850 5724 3 chr6D.!!$F1 3874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 568 0.249447 TCGTCTCATTGCTATGCCCG 60.249 55.000 3.00 5.61 0.00 6.13 F
614 640 0.250338 ACCTCCACAGCGAGAAAACC 60.250 55.000 0.00 0.00 30.97 3.27 F
813 866 1.162698 CCAGCACACATTCCAGTCAG 58.837 55.000 0.00 0.00 0.00 3.51 F
814 867 1.544093 CCAGCACACATTCCAGTCAGT 60.544 52.381 0.00 0.00 0.00 3.41 F
2609 2802 3.293337 CATTGGATGCATGAAGAAGGGA 58.707 45.455 2.46 0.00 0.00 4.20 F
2853 3046 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
2855 3048 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
3742 4436 1.153269 GCTTCAGCTGTAGGAGGCC 60.153 63.158 20.39 0.00 38.21 5.19 F
4633 5507 0.944386 AAGCAAACGTCGATGCAGTT 59.056 45.000 22.78 11.36 44.95 3.16 F
5863 6783 0.476771 TTTTCACTCCCCTGGTGTCC 59.523 55.000 0.00 0.00 36.25 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1915 9.319143 CAAAAGGATCAATACGTTCTTCTAGAT 57.681 33.333 0.00 0.00 0.00 1.98 R
2609 2802 6.553100 TCAATTTGGGATCAGTAAAAACAGGT 59.447 34.615 0.00 0.00 0.00 4.00 R
2806 2999 5.065988 CGGAGAAATGGATAAAAATGGACGT 59.934 40.000 0.00 0.00 0.00 4.34 R
2807 3000 5.295787 TCGGAGAAATGGATAAAAATGGACG 59.704 40.000 0.00 0.00 0.00 4.79 R
4303 5169 0.467290 ATTGCAAGGTCACCCACGTT 60.467 50.000 4.94 0.00 33.18 3.99 R
4612 5486 0.512518 CTGCATCGACGTTTGCTTCA 59.487 50.000 20.36 5.81 39.60 3.02 R
4613 5487 0.512952 ACTGCATCGACGTTTGCTTC 59.487 50.000 20.36 0.00 39.60 3.86 R
5731 6647 0.171007 GAATTGCACCACACCATCGG 59.829 55.000 0.00 0.00 0.00 4.18 R
6458 7392 0.397564 TTGAGGATGCTGTGCACTCA 59.602 50.000 19.41 15.87 43.04 3.41 R
6794 7731 0.104120 CCAATGTCCATGCATGCAGG 59.896 55.000 26.69 25.77 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.588239 ATGGATCAGCAACTCCTGGA 58.412 50.000 0.00 0.00 33.64 3.86
149 150 2.213499 CCCATACAATCTCGAGCAACC 58.787 52.381 7.81 0.00 0.00 3.77
150 151 1.860950 CCATACAATCTCGAGCAACCG 59.139 52.381 7.81 0.00 0.00 4.44
160 161 1.139095 GAGCAACCGTACTAGCGCT 59.861 57.895 17.26 17.26 0.00 5.92
162 163 2.222217 GCAACCGTACTAGCGCTCG 61.222 63.158 16.34 11.32 0.00 5.03
219 220 0.548989 TTTACACATCCATCCCCCGG 59.451 55.000 0.00 0.00 0.00 5.73
265 266 1.271054 GGCATAGCATGGGAACTCGAT 60.271 52.381 0.00 0.00 0.00 3.59
269 270 0.982852 AGCATGGGAACTCGATGGGA 60.983 55.000 0.00 0.00 33.00 4.37
286 287 6.097696 TCGATGGGATGTCAAACACTCTTATA 59.902 38.462 0.00 0.00 0.00 0.98
294 295 7.476540 TGTCAAACACTCTTATAAGCTCCTA 57.523 36.000 7.67 0.00 0.00 2.94
296 297 8.198109 TGTCAAACACTCTTATAAGCTCCTATC 58.802 37.037 7.67 0.00 0.00 2.08
297 298 8.198109 GTCAAACACTCTTATAAGCTCCTATCA 58.802 37.037 7.67 0.00 0.00 2.15
307 310 1.145945 AGCTCCTATCACCTCCATCGA 59.854 52.381 0.00 0.00 0.00 3.59
310 313 1.216930 TCCTATCACCTCCATCGACCA 59.783 52.381 0.00 0.00 0.00 4.02
315 318 0.608130 CACCTCCATCGACCACTTCA 59.392 55.000 0.00 0.00 0.00 3.02
339 342 8.539544 TCAGTTGATATACCATCTCTTTGTGAA 58.460 33.333 0.00 0.00 0.00 3.18
369 372 1.227823 TGGTTGTTCCAGACTGCCG 60.228 57.895 0.00 0.00 41.93 5.69
371 374 1.228657 GGTTGTTCCAGACTGCCGAC 61.229 60.000 0.00 0.00 35.97 4.79
377 380 1.184970 TCCAGACTGCCGACATCACA 61.185 55.000 0.00 0.00 0.00 3.58
380 383 1.134877 CAGACTGCCGACATCACAGAT 60.135 52.381 6.04 0.00 35.38 2.90
381 384 1.552337 AGACTGCCGACATCACAGATT 59.448 47.619 6.04 0.00 35.38 2.40
382 385 1.929836 GACTGCCGACATCACAGATTC 59.070 52.381 6.04 0.00 35.38 2.52
383 386 1.276138 ACTGCCGACATCACAGATTCA 59.724 47.619 6.04 0.00 35.38 2.57
384 387 1.662629 CTGCCGACATCACAGATTCAC 59.337 52.381 0.00 0.00 33.10 3.18
385 388 1.001860 TGCCGACATCACAGATTCACA 59.998 47.619 0.00 0.00 0.00 3.58
386 389 2.283298 GCCGACATCACAGATTCACAT 58.717 47.619 0.00 0.00 0.00 3.21
387 390 3.118811 TGCCGACATCACAGATTCACATA 60.119 43.478 0.00 0.00 0.00 2.29
390 393 5.727791 GCCGACATCACAGATTCACATAAAC 60.728 44.000 0.00 0.00 0.00 2.01
396 399 6.000891 TCACAGATTCACATAAACTGCAAC 57.999 37.500 0.00 0.00 32.67 4.17
412 415 3.865929 AACGGCGGCAGTGTCTCTG 62.866 63.158 13.24 0.00 46.12 3.35
413 416 4.363990 CGGCGGCAGTGTCTCTGT 62.364 66.667 10.53 0.00 45.23 3.41
447 450 2.717639 TCTAGCAGATCTTTTGGCCC 57.282 50.000 0.00 0.00 0.00 5.80
449 452 2.308570 TCTAGCAGATCTTTTGGCCCAA 59.691 45.455 0.00 0.00 0.00 4.12
450 453 2.014010 AGCAGATCTTTTGGCCCAAA 57.986 45.000 4.38 4.38 0.00 3.28
479 482 1.079503 GCAGCTGAGGAAGGTTTACG 58.920 55.000 20.43 0.00 33.14 3.18
491 494 3.982576 AGGTTTACGCCAAAGAAACTG 57.017 42.857 0.00 0.00 34.26 3.16
493 496 2.223618 GGTTTACGCCAAAGAAACTGCA 60.224 45.455 0.00 0.00 34.26 4.41
494 497 3.440228 GTTTACGCCAAAGAAACTGCAA 58.560 40.909 0.00 0.00 31.71 4.08
495 498 4.048504 GTTTACGCCAAAGAAACTGCAAT 58.951 39.130 0.00 0.00 31.71 3.56
497 500 1.000274 ACGCCAAAGAAACTGCAATCC 60.000 47.619 0.00 0.00 0.00 3.01
498 501 1.000385 CGCCAAAGAAACTGCAATCCA 60.000 47.619 0.00 0.00 0.00 3.41
500 503 2.997986 GCCAAAGAAACTGCAATCCATG 59.002 45.455 0.00 0.00 0.00 3.66
501 504 3.306225 GCCAAAGAAACTGCAATCCATGA 60.306 43.478 0.00 0.00 0.00 3.07
504 507 3.159213 AGAAACTGCAATCCATGACCA 57.841 42.857 0.00 0.00 0.00 4.02
505 508 2.821969 AGAAACTGCAATCCATGACCAC 59.178 45.455 0.00 0.00 0.00 4.16
510 532 3.194116 ACTGCAATCCATGACCACATTTC 59.806 43.478 0.00 0.00 34.15 2.17
534 556 2.076100 AGCGCATGAAAAATCGTCTCA 58.924 42.857 11.47 0.00 0.00 3.27
536 558 3.127548 AGCGCATGAAAAATCGTCTCATT 59.872 39.130 11.47 0.00 0.00 2.57
546 568 0.249447 TCGTCTCATTGCTATGCCCG 60.249 55.000 3.00 5.61 0.00 6.13
552 574 1.879380 TCATTGCTATGCCCGCATAAC 59.121 47.619 10.43 6.95 38.30 1.89
584 610 2.826128 ACTCCTCGCTAACATGTCTTCA 59.174 45.455 0.00 0.00 0.00 3.02
585 611 3.449018 ACTCCTCGCTAACATGTCTTCAT 59.551 43.478 0.00 0.00 34.21 2.57
599 625 7.203910 ACATGTCTTCATAATAACTCGACCTC 58.796 38.462 0.00 0.00 32.47 3.85
605 631 2.674796 AATAACTCGACCTCCACAGC 57.325 50.000 0.00 0.00 0.00 4.40
609 635 2.033602 TCGACCTCCACAGCGAGA 59.966 61.111 0.00 0.00 30.97 4.04
614 640 0.250338 ACCTCCACAGCGAGAAAACC 60.250 55.000 0.00 0.00 30.97 3.27
757 809 9.774742 ATTTCGTTTTATGTCTCTAAATTGCTC 57.225 29.630 0.00 0.00 0.00 4.26
813 866 1.162698 CCAGCACACATTCCAGTCAG 58.837 55.000 0.00 0.00 0.00 3.51
814 867 1.544093 CCAGCACACATTCCAGTCAGT 60.544 52.381 0.00 0.00 0.00 3.41
871 924 4.065281 ACACTGTCGCGCCCCTAC 62.065 66.667 0.00 0.00 0.00 3.18
1830 1915 9.725019 ATATACTCATGATTTTAGCGGAATCAA 57.275 29.630 13.69 1.85 44.15 2.57
2609 2802 3.293337 CATTGGATGCATGAAGAAGGGA 58.707 45.455 2.46 0.00 0.00 4.20
2827 3020 8.980481 AGATACGTCCATTTTTATCCATTTCT 57.020 30.769 0.00 0.00 0.00 2.52
2828 3021 9.057089 AGATACGTCCATTTTTATCCATTTCTC 57.943 33.333 0.00 0.00 0.00 2.87
2829 3022 6.451064 ACGTCCATTTTTATCCATTTCTCC 57.549 37.500 0.00 0.00 0.00 3.71
2830 3023 5.065988 ACGTCCATTTTTATCCATTTCTCCG 59.934 40.000 0.00 0.00 0.00 4.63
2831 3024 5.295787 CGTCCATTTTTATCCATTTCTCCGA 59.704 40.000 0.00 0.00 0.00 4.55
2832 3025 6.495706 GTCCATTTTTATCCATTTCTCCGAC 58.504 40.000 0.00 0.00 0.00 4.79
2833 3026 6.094881 GTCCATTTTTATCCATTTCTCCGACA 59.905 38.462 0.00 0.00 0.00 4.35
2834 3027 6.661377 TCCATTTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
2835 3028 6.974622 CCATTTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
2836 3029 7.362920 CCATTTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
2837 3030 8.673711 CATTTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2838 3031 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
2839 3032 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2840 3033 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2841 3034 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
2842 3035 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2843 3036 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2844 3037 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2845 3038 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2846 3039 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2847 3040 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2848 3041 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2849 3042 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2850 3043 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2851 3044 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2852 3045 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2853 3046 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2854 3047 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2855 3048 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2856 3049 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3477 4171 3.882888 TGTTCAGAGTTGGTTTGGCTTAG 59.117 43.478 0.00 0.00 0.00 2.18
3492 4186 7.329471 GGTTTGGCTTAGAGAATTTTCATGTTC 59.671 37.037 0.00 0.00 0.00 3.18
3493 4187 7.765695 TTGGCTTAGAGAATTTTCATGTTCT 57.234 32.000 0.00 0.00 37.39 3.01
3525 4219 1.722034 TGTCAAGTTCTGCTCCCTCT 58.278 50.000 0.00 0.00 0.00 3.69
3534 4228 1.767088 TCTGCTCCCTCTGATCCAATG 59.233 52.381 0.00 0.00 0.00 2.82
3539 4233 3.244044 GCTCCCTCTGATCCAATGTACTC 60.244 52.174 0.00 0.00 0.00 2.59
3553 4247 6.038382 TCCAATGTACTCGTCTCTTCTGTATC 59.962 42.308 0.00 0.00 0.00 2.24
3561 4255 5.955488 TCGTCTCTTCTGTATCTTTTCTGG 58.045 41.667 0.00 0.00 0.00 3.86
3720 4414 4.039488 TGAATGGCAATGCTTCTTCAAGTT 59.961 37.500 4.82 0.00 31.45 2.66
3733 4427 7.271973 GCTTCTTCAAGTTTTAGCTTCAGCTG 61.272 42.308 7.63 7.63 40.86 4.24
3734 4428 9.534926 GCTTCTTCAAGTTTTAGCTTCAGCTGT 62.535 40.741 14.67 0.00 40.86 4.40
3742 4436 1.153269 GCTTCAGCTGTAGGAGGCC 60.153 63.158 20.39 0.00 38.21 5.19
3744 4438 1.781786 CTTCAGCTGTAGGAGGCCTA 58.218 55.000 14.67 0.00 34.61 3.93
3745 4439 2.111384 CTTCAGCTGTAGGAGGCCTAA 58.889 52.381 14.67 0.00 37.91 2.69
3746 4440 1.781786 TCAGCTGTAGGAGGCCTAAG 58.218 55.000 14.67 0.00 37.91 2.18
3817 4518 3.450904 TGCCTAATCAGTTGTAGGAGGT 58.549 45.455 0.86 0.00 39.51 3.85
3825 4526 4.994282 TCAGTTGTAGGAGGTCTAAGTGA 58.006 43.478 0.00 0.00 0.00 3.41
3829 4530 5.780793 AGTTGTAGGAGGTCTAAGTGATGTT 59.219 40.000 0.00 0.00 0.00 2.71
3841 4543 6.262273 GTCTAAGTGATGTTGGGAAAGTTTGA 59.738 38.462 0.00 0.00 0.00 2.69
3958 4660 2.747446 CCGGGAGAAAGTTGGTTATGTG 59.253 50.000 0.00 0.00 0.00 3.21
4048 4855 5.018809 AGTATGGTCAAAAGGTGAATGCAT 58.981 37.500 0.00 0.00 38.23 3.96
4202 5046 2.547855 GGGTGAAACATTTGTTGGAGCC 60.548 50.000 0.00 2.67 39.98 4.70
4274 5140 9.793259 TCTGAACTTCTATTTGGTGAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
4301 5167 6.293516 CCAAAACATGGTTGAATCATTTGGTG 60.294 38.462 11.90 0.00 44.85 4.17
4303 5169 5.804944 ACATGGTTGAATCATTTGGTGAA 57.195 34.783 0.00 0.00 40.97 3.18
4306 5172 4.615949 TGGTTGAATCATTTGGTGAAACG 58.384 39.130 0.00 0.00 40.97 3.60
4461 5327 9.237187 TGCAATTTATTTGTGATACCTGAAGTA 57.763 29.630 0.00 0.00 37.65 2.24
4489 5355 4.982916 AGTTTTCTCTACTGCTAACACACG 59.017 41.667 0.00 0.00 0.00 4.49
4492 5358 4.579454 TCTCTACTGCTAACACACGTTT 57.421 40.909 0.00 0.00 36.52 3.60
4525 5391 9.401058 TGGTAGTAGTACTAAAGTAGCTTAAGG 57.599 37.037 11.64 0.00 31.62 2.69
4543 5409 6.515035 GCTTAAGGCCATATGTGTTTGGTATC 60.515 42.308 5.01 0.00 35.34 2.24
4561 5435 9.898152 TTTGGTATCACTGATATATCAAACACA 57.102 29.630 16.08 1.11 36.18 3.72
4613 5487 6.799512 CCTTTGCTCAGGGTTTAGAATAATG 58.200 40.000 0.00 0.00 0.00 1.90
4616 5490 7.630242 TTGCTCAGGGTTTAGAATAATGAAG 57.370 36.000 0.00 0.00 0.00 3.02
4624 5498 6.745907 GGGTTTAGAATAATGAAGCAAACGTC 59.254 38.462 0.00 0.00 0.00 4.34
4633 5507 0.944386 AAGCAAACGTCGATGCAGTT 59.056 45.000 22.78 11.36 44.95 3.16
4634 5508 0.944386 AGCAAACGTCGATGCAGTTT 59.056 45.000 22.78 8.12 44.95 2.66
4636 5510 2.116366 GCAAACGTCGATGCAGTTTTT 58.884 42.857 18.28 0.00 42.12 1.94
4637 5511 2.097925 GCAAACGTCGATGCAGTTTTTG 60.098 45.455 18.28 8.69 42.12 2.44
4639 5513 3.684103 AACGTCGATGCAGTTTTTGAA 57.316 38.095 4.06 0.00 0.00 2.69
4690 5567 9.023962 TGCTCATGGTTTAGAATAAGAACAAAT 57.976 29.630 0.00 0.00 0.00 2.32
4825 5702 3.865446 TGCTCTGACAATGTGACCATAG 58.135 45.455 0.00 0.00 0.00 2.23
4918 5803 5.817816 CCGTTCTTCTTGTATTCAGCCTTAT 59.182 40.000 0.00 0.00 0.00 1.73
4921 5806 6.313519 TCTTCTTGTATTCAGCCTTATGGT 57.686 37.500 0.00 0.00 35.27 3.55
4924 5809 6.757897 TCTTGTATTCAGCCTTATGGTTTG 57.242 37.500 0.00 0.00 35.27 2.93
4933 5818 4.949856 CAGCCTTATGGTTTGTATGTTCCT 59.050 41.667 0.00 0.00 35.27 3.36
4934 5819 4.949856 AGCCTTATGGTTTGTATGTTCCTG 59.050 41.667 0.00 0.00 35.27 3.86
4949 5834 6.976934 ATGTTCCTGGATTTGTTACTGTTT 57.023 33.333 0.00 0.00 0.00 2.83
4958 5843 4.379339 TTTGTTACTGTTTGAACCTGCC 57.621 40.909 0.00 0.00 0.00 4.85
4963 5848 1.340991 ACTGTTTGAACCTGCCTGTGT 60.341 47.619 0.00 0.00 0.00 3.72
4965 5850 2.549754 CTGTTTGAACCTGCCTGTGTAG 59.450 50.000 0.00 0.00 0.00 2.74
4966 5851 2.171659 TGTTTGAACCTGCCTGTGTAGA 59.828 45.455 0.00 0.00 0.00 2.59
4967 5852 3.181445 TGTTTGAACCTGCCTGTGTAGAT 60.181 43.478 0.00 0.00 0.00 1.98
5390 6284 4.881850 GGGCAATTATACTGTGTAGCACTT 59.118 41.667 0.90 0.00 35.11 3.16
5556 6451 4.380531 TGCTCTGAGAAACAACAGGTAAG 58.619 43.478 9.28 0.00 35.20 2.34
5724 6640 4.942761 ATGGCACTTCACAACTTGAATT 57.057 36.364 0.00 0.00 43.54 2.17
5731 6647 7.327032 GGCACTTCACAACTTGAATTATCTTTC 59.673 37.037 0.00 0.00 43.54 2.62
5740 6656 6.180472 ACTTGAATTATCTTTCCGATGGTGT 58.820 36.000 0.00 0.00 33.48 4.16
5743 6659 3.992943 TTATCTTTCCGATGGTGTGGT 57.007 42.857 0.00 0.00 33.48 4.16
5863 6783 0.476771 TTTTCACTCCCCTGGTGTCC 59.523 55.000 0.00 0.00 36.25 4.02
5904 6825 5.112686 TGGCAACGAGCTTAAAACATTTTT 58.887 33.333 0.00 0.00 44.79 1.94
6047 6968 3.189702 GCCAAAGCGTGAAAGTTATACCA 59.810 43.478 0.00 0.00 0.00 3.25
6050 6971 5.163854 CCAAAGCGTGAAAGTTATACCAGAG 60.164 44.000 0.00 0.00 0.00 3.35
6237 7159 8.154649 TCAAGGAAATTGACAGTTTCTAACTC 57.845 34.615 19.22 6.11 43.09 3.01
6324 7248 3.886505 GTCAAACCACAAACTGGACCATA 59.113 43.478 0.00 0.00 43.95 2.74
6458 7392 1.220206 CCATGCTCTCTGCGAACCT 59.780 57.895 0.00 0.00 46.63 3.50
6470 7404 1.595109 CGAACCTGAGTGCACAGCA 60.595 57.895 21.04 15.43 36.67 4.41
6524 7458 5.734720 TGCTCAGGTCATTTCCTTAACTAG 58.265 41.667 0.00 0.00 35.37 2.57
6583 7519 4.454847 AGCGCTTGATGAAATATGGATCTG 59.545 41.667 2.64 0.00 0.00 2.90
6622 7558 3.884037 CCCCAGGGCTATTGACTTTAT 57.116 47.619 0.00 0.00 0.00 1.40
6623 7559 4.184649 CCCCAGGGCTATTGACTTTATT 57.815 45.455 0.00 0.00 0.00 1.40
6624 7560 5.319043 CCCCAGGGCTATTGACTTTATTA 57.681 43.478 0.00 0.00 0.00 0.98
6625 7561 5.070685 CCCCAGGGCTATTGACTTTATTAC 58.929 45.833 0.00 0.00 0.00 1.89
6626 7562 5.163088 CCCCAGGGCTATTGACTTTATTACT 60.163 44.000 0.00 0.00 0.00 2.24
6666 7602 2.235155 TGCTAACGGGTTTCTATCTGCA 59.765 45.455 0.00 0.00 0.00 4.41
6667 7603 2.608090 GCTAACGGGTTTCTATCTGCAC 59.392 50.000 0.00 0.00 0.00 4.57
6794 7731 2.665603 GTCAGGACACAGGGAGCC 59.334 66.667 0.00 0.00 0.00 4.70
6795 7732 2.607750 TCAGGACACAGGGAGCCC 60.608 66.667 0.00 0.00 0.00 5.19
6897 7834 5.570973 CCTACACATCTGATTCGATTCGATC 59.429 44.000 9.96 9.93 35.23 3.69
6937 7874 4.100981 TTGCCGTTTTGCAAGCAC 57.899 50.000 10.31 5.78 45.77 4.40
6945 7895 0.100325 TTTTGCAAGCACACTGACGG 59.900 50.000 0.00 0.00 0.00 4.79
6984 7934 2.282391 ATTCAGGCGCCACAGCAA 60.282 55.556 31.54 13.45 39.83 3.91
7006 7956 0.732880 GCAGCTGCAGCACATTCTTG 60.733 55.000 38.24 26.12 45.16 3.02
7012 7962 1.874345 GCAGCACATTCTTGCCTGCT 61.874 55.000 3.88 0.00 44.14 4.24
7025 7975 3.895232 TGCCTGCTTTTTAACCACAAA 57.105 38.095 0.00 0.00 0.00 2.83
7026 7976 4.207891 TGCCTGCTTTTTAACCACAAAA 57.792 36.364 0.00 0.00 0.00 2.44
7027 7977 4.775236 TGCCTGCTTTTTAACCACAAAAT 58.225 34.783 0.00 0.00 0.00 1.82
7029 7979 5.065731 TGCCTGCTTTTTAACCACAAAATTG 59.934 36.000 0.00 0.00 0.00 2.32
7031 7981 6.258947 GCCTGCTTTTTAACCACAAAATTGTA 59.741 34.615 0.00 0.00 39.91 2.41
7032 7982 7.518211 GCCTGCTTTTTAACCACAAAATTGTAG 60.518 37.037 0.00 0.00 39.91 2.74
7034 7984 9.522804 CTGCTTTTTAACCACAAAATTGTAGTA 57.477 29.630 0.00 0.00 39.91 1.82
7050 8000 8.882415 AATTGTAGTATTACTGTTACCATCGG 57.118 34.615 6.60 0.00 0.00 4.18
7052 8002 7.268199 TGTAGTATTACTGTTACCATCGGAG 57.732 40.000 6.60 0.00 0.00 4.63
7053 8003 5.786264 AGTATTACTGTTACCATCGGAGG 57.214 43.478 0.00 0.00 0.00 4.30
7054 8004 2.973694 TTACTGTTACCATCGGAGGC 57.026 50.000 0.00 0.00 0.00 4.70
7055 8005 0.742505 TACTGTTACCATCGGAGGCG 59.257 55.000 0.00 0.00 0.00 5.52
7056 8006 1.255667 ACTGTTACCATCGGAGGCGT 61.256 55.000 0.00 0.00 0.00 5.68
7059 8009 2.048023 TTACCATCGGAGGCGTCGT 61.048 57.895 0.00 0.00 0.00 4.34
7060 8010 1.996786 TTACCATCGGAGGCGTCGTC 61.997 60.000 0.00 0.00 0.00 4.20
7061 8011 4.907034 CCATCGGAGGCGTCGTCG 62.907 72.222 0.00 0.00 40.37 5.12
7062 8012 4.175489 CATCGGAGGCGTCGTCGT 62.175 66.667 3.66 0.00 39.49 4.34
7063 8013 4.175489 ATCGGAGGCGTCGTCGTG 62.175 66.667 3.66 0.00 39.49 4.35
7076 8029 2.883574 TCGTCGTGACAAGAGTTTTGT 58.116 42.857 0.00 0.00 34.97 2.83
7087 8040 9.042008 GTGACAAGAGTTTTGTTGTATAGAAGA 57.958 33.333 0.00 0.00 40.51 2.87
7088 8041 9.607988 TGACAAGAGTTTTGTTGTATAGAAGAA 57.392 29.630 0.00 0.00 40.51 2.52
7091 8044 8.507249 CAAGAGTTTTGTTGTATAGAAGAAGGG 58.493 37.037 0.00 0.00 0.00 3.95
7093 8046 7.017254 AGAGTTTTGTTGTATAGAAGAAGGGGA 59.983 37.037 0.00 0.00 0.00 4.81
7094 8047 7.523415 AGTTTTGTTGTATAGAAGAAGGGGAA 58.477 34.615 0.00 0.00 0.00 3.97
7095 8048 8.170730 AGTTTTGTTGTATAGAAGAAGGGGAAT 58.829 33.333 0.00 0.00 0.00 3.01
7097 8050 5.437060 TGTTGTATAGAAGAAGGGGAATGC 58.563 41.667 0.00 0.00 0.00 3.56
7098 8051 4.706842 TGTATAGAAGAAGGGGAATGCC 57.293 45.455 0.00 0.00 0.00 4.40
7099 8052 2.938956 ATAGAAGAAGGGGAATGCCG 57.061 50.000 0.00 0.00 33.83 5.69
7100 8053 1.580059 TAGAAGAAGGGGAATGCCGT 58.420 50.000 0.00 0.00 33.83 5.68
7101 8054 0.035056 AGAAGAAGGGGAATGCCGTG 60.035 55.000 0.00 0.00 33.83 4.94
7102 8055 1.000896 AAGAAGGGGAATGCCGTGG 60.001 57.895 0.00 0.00 33.83 4.94
7103 8056 1.789576 AAGAAGGGGAATGCCGTGGT 61.790 55.000 0.00 0.00 33.83 4.16
7104 8057 0.912487 AGAAGGGGAATGCCGTGGTA 60.912 55.000 0.00 0.00 33.83 3.25
7105 8058 0.746923 GAAGGGGAATGCCGTGGTAC 60.747 60.000 0.00 0.00 33.83 3.34
7106 8059 1.493854 AAGGGGAATGCCGTGGTACA 61.494 55.000 0.00 0.00 33.83 2.90
7107 8060 1.451387 GGGGAATGCCGTGGTACAG 60.451 63.158 0.00 0.00 41.80 2.74
7108 8061 1.298667 GGGAATGCCGTGGTACAGT 59.701 57.895 0.00 0.00 41.80 3.55
7109 8062 0.538118 GGGAATGCCGTGGTACAGTA 59.462 55.000 0.00 0.00 41.80 2.74
7110 8063 1.648504 GGAATGCCGTGGTACAGTAC 58.351 55.000 1.59 1.59 41.80 2.73
7111 8064 1.066716 GGAATGCCGTGGTACAGTACA 60.067 52.381 12.89 0.00 41.80 2.90
7112 8065 2.613474 GGAATGCCGTGGTACAGTACAA 60.613 50.000 12.89 0.00 41.80 2.41
7113 8066 2.843401 ATGCCGTGGTACAGTACAAA 57.157 45.000 12.89 0.00 41.80 2.83
7115 8068 3.128852 TGCCGTGGTACAGTACAAATT 57.871 42.857 12.89 0.00 41.80 1.82
7116 8069 4.268797 TGCCGTGGTACAGTACAAATTA 57.731 40.909 12.89 0.00 41.80 1.40
7117 8070 4.639334 TGCCGTGGTACAGTACAAATTAA 58.361 39.130 12.89 0.00 41.80 1.40
7118 8071 4.691685 TGCCGTGGTACAGTACAAATTAAG 59.308 41.667 12.89 0.00 41.80 1.85
7119 8072 4.692155 GCCGTGGTACAGTACAAATTAAGT 59.308 41.667 12.89 0.00 41.80 2.24
7120 8073 5.868801 GCCGTGGTACAGTACAAATTAAGTA 59.131 40.000 12.89 0.00 41.80 2.24
7121 8074 6.368516 GCCGTGGTACAGTACAAATTAAGTAA 59.631 38.462 12.89 0.00 41.80 2.24
7122 8075 7.412237 GCCGTGGTACAGTACAAATTAAGTAAG 60.412 40.741 12.89 0.00 41.80 2.34
7123 8076 7.412237 CCGTGGTACAGTACAAATTAAGTAAGC 60.412 40.741 12.89 0.00 41.80 3.09
7127 8080 6.165659 ACAGTACAAATTAAGTAAGCAGCG 57.834 37.500 0.00 0.00 0.00 5.18
7151 8104 1.372748 TGCATTTTGCTTTCCGCGG 60.373 52.632 22.12 22.12 45.31 6.46
7155 8108 1.133025 CATTTTGCTTTCCGCGGAGAT 59.867 47.619 29.20 11.53 43.27 2.75
7161 8114 3.247056 TTTCCGCGGAGATGGTGCA 62.247 57.895 29.20 8.04 0.00 4.57
7163 8116 2.739849 TTCCGCGGAGATGGTGCAAA 62.740 55.000 29.20 6.31 0.00 3.68
7164 8117 2.114670 CCGCGGAGATGGTGCAAAT 61.115 57.895 24.07 0.00 0.00 2.32
7166 8119 1.368345 CGCGGAGATGGTGCAAATCA 61.368 55.000 11.98 1.40 0.00 2.57
7167 8120 0.379669 GCGGAGATGGTGCAAATCAG 59.620 55.000 11.98 5.39 0.00 2.90
7168 8121 0.379669 CGGAGATGGTGCAAATCAGC 59.620 55.000 11.98 3.76 43.23 4.26
7169 8122 1.760192 GGAGATGGTGCAAATCAGCT 58.240 50.000 11.98 8.11 43.32 4.24
7170 8123 1.674962 GGAGATGGTGCAAATCAGCTC 59.325 52.381 17.50 17.50 43.33 4.09
7174 8140 3.380637 AGATGGTGCAAATCAGCTCATTC 59.619 43.478 11.98 0.00 43.32 2.67
7176 8142 3.159472 TGGTGCAAATCAGCTCATTCTT 58.841 40.909 0.00 0.00 43.32 2.52
7184 8150 8.959548 TGCAAATCAGCTCATTCTTAAAAGATA 58.040 29.630 0.00 0.00 33.22 1.98
7189 8155 8.668510 TCAGCTCATTCTTAAAAGATATGGAC 57.331 34.615 11.51 7.10 34.49 4.02
7204 8170 1.489481 TGGACTGCTCGATTGGATCT 58.511 50.000 0.00 0.00 0.00 2.75
7230 8197 1.411977 CTGAGATGCCATCCTCGAGTT 59.588 52.381 12.31 0.00 32.30 3.01
7238 8205 0.179134 CATCCTCGAGTTCCCGACAC 60.179 60.000 12.31 0.00 34.56 3.67
7250 8217 4.088421 CGACACCGGTATGCTGTC 57.912 61.111 6.87 9.65 0.00 3.51
7251 8218 1.518572 CGACACCGGTATGCTGTCC 60.519 63.158 6.87 0.00 32.23 4.02
7252 8219 1.594833 GACACCGGTATGCTGTCCA 59.405 57.895 6.87 0.00 0.00 4.02
7253 8220 0.178068 GACACCGGTATGCTGTCCAT 59.822 55.000 6.87 0.00 37.97 3.41
7254 8221 0.178068 ACACCGGTATGCTGTCCATC 59.822 55.000 6.87 0.00 35.34 3.51
7275 8242 0.179161 CCGTGTCGCCAACTAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
7308 8279 3.299503 GGTGGTAGCATTGAATGGGAAT 58.700 45.455 7.35 0.00 0.00 3.01
7369 8344 0.326264 AGTAGCTGTCTTTGGGCCTG 59.674 55.000 4.53 0.00 0.00 4.85
7391 8366 2.262915 GTCCACGGACTCCAGCTG 59.737 66.667 6.78 6.78 41.57 4.24
7471 8446 4.870021 ATTCCTCCCTTGTATTCAAGCT 57.130 40.909 6.56 0.00 46.74 3.74
7482 8457 3.612423 TGTATTCAAGCTGATTCGACGTG 59.388 43.478 0.00 0.00 0.00 4.49
7523 8499 3.958147 AAGCGACCGGCCACATCAG 62.958 63.158 0.00 0.00 45.17 2.90
7529 8505 3.190849 CGGCCACATCAGCAGTCG 61.191 66.667 2.24 0.00 0.00 4.18
7553 8532 0.890996 CCGAATGGGCTGCTTATCCC 60.891 60.000 0.00 0.00 42.93 3.85
7592 8577 5.006165 CGAATCTAGCAAGTTTCATCTGTCC 59.994 44.000 0.00 0.00 32.97 4.02
7617 8603 7.202075 CCATCTCTCTTAGATCATCCAAAAGGA 60.202 40.741 0.00 0.00 43.42 3.36
7634 8620 4.618920 AAGGATTTTCACCGTGACTACT 57.381 40.909 0.00 0.00 0.00 2.57
7635 8621 5.733620 AAGGATTTTCACCGTGACTACTA 57.266 39.130 0.00 0.00 0.00 1.82
7636 8622 5.069501 AGGATTTTCACCGTGACTACTAC 57.930 43.478 0.00 0.00 0.00 2.73
7638 8624 4.322198 GGATTTTCACCGTGACTACTACCA 60.322 45.833 0.00 0.00 0.00 3.25
7639 8625 3.648339 TTTCACCGTGACTACTACCAC 57.352 47.619 0.00 0.00 0.00 4.16
7640 8626 2.574006 TCACCGTGACTACTACCACT 57.426 50.000 0.00 0.00 0.00 4.00
7664 8654 2.542020 TTCACGGAGATGAAACAGCA 57.458 45.000 0.00 0.00 35.65 4.41
7675 8665 2.832563 TGAAACAGCACTGTCGATCAA 58.167 42.857 3.32 0.00 44.13 2.57
7691 8681 4.871993 GATCAATCATCGAGCTGTTGTT 57.128 40.909 0.00 0.00 0.00 2.83
7692 8682 4.830912 GATCAATCATCGAGCTGTTGTTC 58.169 43.478 0.00 0.00 0.00 3.18
7700 8690 2.159099 TCGAGCTGTTGTTCTTCACTGT 60.159 45.455 0.00 0.00 0.00 3.55
7723 8713 4.416738 GCCTCTCCTGGCCGCTTT 62.417 66.667 0.00 0.00 46.82 3.51
7724 8714 2.124942 CCTCTCCTGGCCGCTTTC 60.125 66.667 0.00 0.00 0.00 2.62
7725 8715 2.510238 CTCTCCTGGCCGCTTTCG 60.510 66.667 0.00 0.00 0.00 3.46
7726 8716 4.760047 TCTCCTGGCCGCTTTCGC 62.760 66.667 0.00 0.00 0.00 4.70
7727 8717 4.767255 CTCCTGGCCGCTTTCGCT 62.767 66.667 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.283467 AGCATGGCTGGATAACGATTACTA 59.717 41.667 0.00 0.00 37.57 1.82
2 3 3.403038 AGCATGGCTGGATAACGATTAC 58.597 45.455 0.00 0.00 37.57 1.89
3 4 3.664107 GAGCATGGCTGGATAACGATTA 58.336 45.455 0.00 0.00 39.88 1.75
4 5 2.498167 GAGCATGGCTGGATAACGATT 58.502 47.619 0.00 0.00 39.88 3.34
5 6 1.606480 CGAGCATGGCTGGATAACGAT 60.606 52.381 0.00 0.00 39.88 3.73
6 7 0.249447 CGAGCATGGCTGGATAACGA 60.249 55.000 0.00 0.00 39.88 3.85
9 10 1.123077 AGTCGAGCATGGCTGGATAA 58.877 50.000 6.22 0.00 44.37 1.75
10 11 0.390492 CAGTCGAGCATGGCTGGATA 59.610 55.000 6.22 0.00 44.37 2.59
11 12 1.145598 CAGTCGAGCATGGCTGGAT 59.854 57.895 6.22 0.00 44.37 3.41
149 150 2.099638 TGTGCGAGCGCTAGTACG 59.900 61.111 27.44 20.28 42.51 3.67
150 151 1.872679 GGTGTGCGAGCGCTAGTAC 60.873 63.158 26.93 26.93 42.51 2.73
160 161 0.821301 TGATGCAAAAGGGTGTGCGA 60.821 50.000 0.00 0.00 43.93 5.10
162 163 1.202510 TGTTGATGCAAAAGGGTGTGC 60.203 47.619 0.00 0.00 41.29 4.57
219 220 0.031449 GAGAGCTAGATGGCGACCAC 59.969 60.000 0.00 0.00 35.80 4.16
265 266 5.880332 GCTTATAAGAGTGTTTGACATCCCA 59.120 40.000 16.85 0.00 0.00 4.37
269 270 6.951971 AGGAGCTTATAAGAGTGTTTGACAT 58.048 36.000 16.85 0.00 0.00 3.06
286 287 1.967066 CGATGGAGGTGATAGGAGCTT 59.033 52.381 0.00 0.00 0.00 3.74
294 295 1.482593 GAAGTGGTCGATGGAGGTGAT 59.517 52.381 0.00 0.00 0.00 3.06
296 297 0.608130 TGAAGTGGTCGATGGAGGTG 59.392 55.000 0.00 0.00 0.00 4.00
297 298 0.898320 CTGAAGTGGTCGATGGAGGT 59.102 55.000 0.00 0.00 0.00 3.85
307 310 6.613271 AGAGATGGTATATCAACTGAAGTGGT 59.387 38.462 0.00 0.00 0.00 4.16
310 313 8.543774 ACAAAGAGATGGTATATCAACTGAAGT 58.456 33.333 0.00 0.00 0.00 3.01
315 318 9.334947 CATTCACAAAGAGATGGTATATCAACT 57.665 33.333 0.00 0.00 0.00 3.16
353 356 0.531974 TGTCGGCAGTCTGGAACAAC 60.532 55.000 1.14 0.00 38.70 3.32
364 367 1.662629 GTGAATCTGTGATGTCGGCAG 59.337 52.381 0.00 0.00 0.00 4.85
369 372 6.128200 TGCAGTTTATGTGAATCTGTGATGTC 60.128 38.462 0.00 0.00 0.00 3.06
371 374 6.185852 TGCAGTTTATGTGAATCTGTGATG 57.814 37.500 0.00 0.00 0.00 3.07
377 380 3.119849 GCCGTTGCAGTTTATGTGAATCT 60.120 43.478 0.00 0.00 37.47 2.40
380 383 1.069568 CGCCGTTGCAGTTTATGTGAA 60.070 47.619 0.00 0.00 37.32 3.18
381 384 0.515127 CGCCGTTGCAGTTTATGTGA 59.485 50.000 0.00 0.00 37.32 3.58
382 385 0.454285 CCGCCGTTGCAGTTTATGTG 60.454 55.000 0.00 0.00 37.32 3.21
383 386 1.873165 CCGCCGTTGCAGTTTATGT 59.127 52.632 0.00 0.00 37.32 2.29
384 387 1.514014 GCCGCCGTTGCAGTTTATG 60.514 57.895 0.00 0.00 37.32 1.90
385 388 1.969064 TGCCGCCGTTGCAGTTTAT 60.969 52.632 0.00 0.00 37.32 1.40
386 389 2.592001 TGCCGCCGTTGCAGTTTA 60.592 55.556 0.00 0.00 37.32 2.01
403 406 3.384668 CACGTTCATCAACAGAGACACT 58.615 45.455 0.00 0.00 32.14 3.55
404 407 2.476619 CCACGTTCATCAACAGAGACAC 59.523 50.000 0.00 0.00 32.14 3.67
406 409 2.069273 CCCACGTTCATCAACAGAGAC 58.931 52.381 0.00 0.00 32.14 3.36
412 415 2.866762 GCTAGATCCCACGTTCATCAAC 59.133 50.000 0.00 0.00 0.00 3.18
413 416 2.499693 TGCTAGATCCCACGTTCATCAA 59.500 45.455 0.00 0.00 0.00 2.57
447 450 2.161855 TCAGCTGCACCCATTAGTTTG 58.838 47.619 9.47 0.00 0.00 2.93
449 452 1.340405 CCTCAGCTGCACCCATTAGTT 60.340 52.381 9.47 0.00 0.00 2.24
450 453 0.254178 CCTCAGCTGCACCCATTAGT 59.746 55.000 9.47 0.00 0.00 2.24
464 467 2.178912 TTGGCGTAAACCTTCCTCAG 57.821 50.000 0.00 0.00 0.00 3.35
479 482 2.818130 TGGATTGCAGTTTCTTTGGC 57.182 45.000 0.00 0.00 0.00 4.52
491 494 3.872511 TGAAATGTGGTCATGGATTGC 57.127 42.857 0.00 0.00 34.19 3.56
493 496 5.221106 CGCTTATGAAATGTGGTCATGGATT 60.221 40.000 0.00 0.00 36.41 3.01
494 497 4.276678 CGCTTATGAAATGTGGTCATGGAT 59.723 41.667 0.00 0.00 36.41 3.41
495 498 3.627123 CGCTTATGAAATGTGGTCATGGA 59.373 43.478 0.00 0.00 36.41 3.41
497 500 3.181498 TGCGCTTATGAAATGTGGTCATG 60.181 43.478 9.73 0.00 36.41 3.07
498 501 3.016031 TGCGCTTATGAAATGTGGTCAT 58.984 40.909 9.73 0.00 39.12 3.06
500 503 3.065233 TCATGCGCTTATGAAATGTGGTC 59.935 43.478 9.73 0.00 34.32 4.02
501 504 3.016031 TCATGCGCTTATGAAATGTGGT 58.984 40.909 9.73 0.00 34.32 4.16
510 532 4.591202 AGACGATTTTTCATGCGCTTATG 58.409 39.130 9.73 4.97 0.00 1.90
546 568 2.351726 GGAGTCACATTGTCCGTTATGC 59.648 50.000 0.00 0.00 0.00 3.14
552 574 1.078759 GCGAGGAGTCACATTGTCCG 61.079 60.000 0.00 0.00 35.33 4.79
561 587 2.447443 AGACATGTTAGCGAGGAGTCA 58.553 47.619 0.00 0.00 0.00 3.41
584 610 3.243434 CGCTGTGGAGGTCGAGTTATTAT 60.243 47.826 0.00 0.00 0.00 1.28
585 611 2.098607 CGCTGTGGAGGTCGAGTTATTA 59.901 50.000 0.00 0.00 0.00 0.98
599 625 1.946768 TCAAAGGTTTTCTCGCTGTGG 59.053 47.619 0.00 0.00 0.00 4.17
605 631 1.266989 GGGTGCTCAAAGGTTTTCTCG 59.733 52.381 0.00 0.00 0.00 4.04
609 635 1.063266 TGGAGGGTGCTCAAAGGTTTT 60.063 47.619 0.00 0.00 0.00 2.43
614 640 0.607489 CTGGTGGAGGGTGCTCAAAG 60.607 60.000 0.00 0.00 0.00 2.77
652 678 7.481275 AAGCTTTGTGGTAAATTCATGTTTG 57.519 32.000 0.00 0.00 0.00 2.93
653 679 7.042791 CGAAAGCTTTGTGGTAAATTCATGTTT 60.043 33.333 18.30 0.00 0.00 2.83
770 823 3.769844 CTGGGCTTGGTCTAGAAGTCTAA 59.230 47.826 0.00 0.00 0.00 2.10
775 828 0.107459 GGCTGGGCTTGGTCTAGAAG 60.107 60.000 0.00 0.00 0.00 2.85
813 866 3.486875 GCTTTGTGTTGGTGTAGTGTGAC 60.487 47.826 0.00 0.00 0.00 3.67
814 867 2.680841 GCTTTGTGTTGGTGTAGTGTGA 59.319 45.455 0.00 0.00 0.00 3.58
1830 1915 9.319143 CAAAAGGATCAATACGTTCTTCTAGAT 57.681 33.333 0.00 0.00 0.00 1.98
2609 2802 6.553100 TCAATTTGGGATCAGTAAAAACAGGT 59.447 34.615 0.00 0.00 0.00 4.00
2802 2995 8.980481 AGAAATGGATAAAAATGGACGTATCT 57.020 30.769 0.00 0.00 0.00 1.98
2803 2996 8.290325 GGAGAAATGGATAAAAATGGACGTATC 58.710 37.037 0.00 0.00 0.00 2.24
2804 2997 7.041372 CGGAGAAATGGATAAAAATGGACGTAT 60.041 37.037 0.00 0.00 0.00 3.06
2805 2998 6.259167 CGGAGAAATGGATAAAAATGGACGTA 59.741 38.462 0.00 0.00 0.00 3.57
2806 2999 5.065988 CGGAGAAATGGATAAAAATGGACGT 59.934 40.000 0.00 0.00 0.00 4.34
2807 3000 5.295787 TCGGAGAAATGGATAAAAATGGACG 59.704 40.000 0.00 0.00 0.00 4.79
2808 3001 6.094881 TGTCGGAGAAATGGATAAAAATGGAC 59.905 38.462 0.00 0.00 39.69 4.02
2809 3002 6.184068 TGTCGGAGAAATGGATAAAAATGGA 58.816 36.000 0.00 0.00 39.69 3.41
2810 3003 6.449635 TGTCGGAGAAATGGATAAAAATGG 57.550 37.500 0.00 0.00 39.69 3.16
2811 3004 7.538575 ACTTGTCGGAGAAATGGATAAAAATG 58.461 34.615 0.00 0.00 39.69 2.32
2812 3005 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
2813 3006 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
2814 3007 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
2815 3008 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
2816 3009 7.497909 GGAAATACTTGTCGGAGAAATGGATAA 59.502 37.037 0.00 0.00 39.69 1.75
2817 3010 6.990349 GGAAATACTTGTCGGAGAAATGGATA 59.010 38.462 0.00 0.00 39.69 2.59
2818 3011 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2819 3012 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
2820 3013 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
2821 3014 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2822 3015 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2823 3016 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2824 3017 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2825 3018 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2826 3019 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2827 3020 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2828 3021 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2829 3022 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2830 3023 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2831 3024 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2832 3025 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2833 3026 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2834 3027 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2835 3028 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2836 3029 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2837 3030 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2838 3031 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2839 3032 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2840 3033 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2841 3034 2.335092 TAGCTACTCCCTCCGTCCGG 62.335 65.000 0.00 0.00 0.00 5.14
2842 3035 0.465097 TTAGCTACTCCCTCCGTCCG 60.465 60.000 0.00 0.00 0.00 4.79
2843 3036 1.998222 ATTAGCTACTCCCTCCGTCC 58.002 55.000 0.00 0.00 0.00 4.79
2844 3037 4.618693 GCAATATTAGCTACTCCCTCCGTC 60.619 50.000 0.00 0.00 0.00 4.79
2845 3038 3.258622 GCAATATTAGCTACTCCCTCCGT 59.741 47.826 0.00 0.00 0.00 4.69
2846 3039 3.258372 TGCAATATTAGCTACTCCCTCCG 59.742 47.826 0.00 0.00 0.00 4.63
2847 3040 4.891992 TGCAATATTAGCTACTCCCTCC 57.108 45.455 0.00 0.00 0.00 4.30
2848 3041 6.017026 GGTTTTGCAATATTAGCTACTCCCTC 60.017 42.308 0.00 0.00 0.00 4.30
2849 3042 5.828328 GGTTTTGCAATATTAGCTACTCCCT 59.172 40.000 0.00 0.00 0.00 4.20
2850 3043 5.828328 AGGTTTTGCAATATTAGCTACTCCC 59.172 40.000 0.00 0.00 0.00 4.30
2851 3044 6.542370 TCAGGTTTTGCAATATTAGCTACTCC 59.458 38.462 0.00 0.00 0.00 3.85
2852 3045 7.553881 TCAGGTTTTGCAATATTAGCTACTC 57.446 36.000 0.00 0.00 0.00 2.59
2853 3046 7.148069 GGTTCAGGTTTTGCAATATTAGCTACT 60.148 37.037 0.00 0.00 0.00 2.57
2854 3047 6.972901 GGTTCAGGTTTTGCAATATTAGCTAC 59.027 38.462 0.00 0.00 0.00 3.58
2855 3048 6.661377 TGGTTCAGGTTTTGCAATATTAGCTA 59.339 34.615 0.00 0.00 0.00 3.32
2856 3049 5.480073 TGGTTCAGGTTTTGCAATATTAGCT 59.520 36.000 0.00 0.00 0.00 3.32
3450 4144 4.202151 GCCAAACCAACTCTGAACAGATTT 60.202 41.667 4.96 3.55 36.76 2.17
3454 4148 2.301346 AGCCAAACCAACTCTGAACAG 58.699 47.619 0.00 0.00 0.00 3.16
3492 4186 8.017946 GCAGAACTTGACAAAATAAAGGTAGAG 58.982 37.037 0.00 0.00 0.00 2.43
3493 4187 7.719633 AGCAGAACTTGACAAAATAAAGGTAGA 59.280 33.333 0.00 0.00 0.00 2.59
3525 4219 4.950475 AGAAGAGACGAGTACATTGGATCA 59.050 41.667 0.00 0.00 0.00 2.92
3534 4228 7.694784 CAGAAAAGATACAGAAGAGACGAGTAC 59.305 40.741 0.00 0.00 0.00 2.73
3539 4233 5.715070 ACCAGAAAAGATACAGAAGAGACG 58.285 41.667 0.00 0.00 0.00 4.18
3696 4390 3.861276 TGAAGAAGCATTGCCATTCAG 57.139 42.857 13.64 0.00 0.00 3.02
3703 4397 5.225642 AGCTAAAACTTGAAGAAGCATTGC 58.774 37.500 0.00 0.00 31.68 3.56
3733 4427 4.343239 TCCGAAATTACTTAGGCCTCCTAC 59.657 45.833 9.68 0.00 35.63 3.18
3734 4428 4.549668 TCCGAAATTACTTAGGCCTCCTA 58.450 43.478 9.68 0.00 34.61 2.94
3735 4429 3.381335 TCCGAAATTACTTAGGCCTCCT 58.619 45.455 9.68 0.00 37.71 3.69
3736 4430 3.832615 TCCGAAATTACTTAGGCCTCC 57.167 47.619 9.68 0.00 30.14 4.30
3737 4431 6.694877 ATTTTCCGAAATTACTTAGGCCTC 57.305 37.500 9.68 0.00 31.48 4.70
3738 4432 8.584063 TTTATTTTCCGAAATTACTTAGGCCT 57.416 30.769 11.78 11.78 36.82 5.19
3740 4434 8.188799 AGCTTTATTTTCCGAAATTACTTAGGC 58.811 33.333 0.00 0.00 36.82 3.93
3782 4483 7.402862 ACTGATTAGGCAATAAGGTTTGTACT 58.597 34.615 0.00 0.00 27.74 2.73
3817 4518 6.361433 TCAAACTTTCCCAACATCACTTAGA 58.639 36.000 0.00 0.00 0.00 2.10
3825 4526 8.599624 AGATCATTATCAAACTTTCCCAACAT 57.400 30.769 0.00 0.00 34.28 2.71
3829 4530 6.973642 AGGAGATCATTATCAAACTTTCCCA 58.026 36.000 0.00 0.00 34.28 4.37
3977 4679 6.717540 ACGATAGAACTCCTAGTCAGCATAAT 59.282 38.462 0.00 0.00 41.38 1.28
4048 4855 4.391830 CGGCAGAAAGTTATCTTTGCACTA 59.608 41.667 3.50 0.00 42.99 2.74
4292 5158 1.678627 CACCCACGTTTCACCAAATGA 59.321 47.619 0.00 0.00 33.32 2.57
4301 5167 1.098712 TGCAAGGTCACCCACGTTTC 61.099 55.000 0.00 0.00 30.39 2.78
4303 5169 0.467290 ATTGCAAGGTCACCCACGTT 60.467 50.000 4.94 0.00 33.18 3.99
4306 5172 1.686052 TCAAATTGCAAGGTCACCCAC 59.314 47.619 4.94 0.00 0.00 4.61
4359 5225 7.026631 TGAGTTACAAAAGTGTTGATCCAAG 57.973 36.000 0.00 0.00 39.30 3.61
4428 5294 7.816995 GGTATCACAAATAAATTGCAAGGTTCA 59.183 33.333 4.94 0.00 43.13 3.18
4461 5327 7.335924 TGTGTTAGCAGTAGAGAAAACTGTTTT 59.664 33.333 17.71 17.71 45.01 2.43
4525 5391 4.881273 TCAGTGATACCAAACACATATGGC 59.119 41.667 7.80 0.00 40.51 4.40
4543 5409 9.030301 TGTCGTATTGTGTTTGATATATCAGTG 57.970 33.333 14.86 0.00 38.19 3.66
4612 5486 0.512518 CTGCATCGACGTTTGCTTCA 59.487 50.000 20.36 5.81 39.60 3.02
4613 5487 0.512952 ACTGCATCGACGTTTGCTTC 59.487 50.000 20.36 0.00 39.60 3.86
4616 5490 1.753956 AAAACTGCATCGACGTTTGC 58.246 45.000 15.40 15.40 39.33 3.68
4624 5498 9.128107 AGTACATAATTTTCAAAAACTGCATCG 57.872 29.630 0.00 0.00 0.00 3.84
4634 5508 9.921637 GGATTCACCAAGTACATAATTTTCAAA 57.078 29.630 0.00 0.00 38.79 2.69
4636 5510 7.893302 AGGGATTCACCAAGTACATAATTTTCA 59.107 33.333 0.00 0.00 41.20 2.69
4637 5511 8.293699 AGGGATTCACCAAGTACATAATTTTC 57.706 34.615 0.00 0.00 41.20 2.29
4639 5513 8.531146 CAAAGGGATTCACCAAGTACATAATTT 58.469 33.333 0.00 0.00 41.20 1.82
4690 5567 6.208402 ACCATAACTACACATTTTGCATCACA 59.792 34.615 0.00 0.00 0.00 3.58
4825 5702 4.141688 CCTTTTATCCTGACTCACTACCCC 60.142 50.000 0.00 0.00 0.00 4.95
4831 5708 2.093658 TCGGCCTTTTATCCTGACTCAC 60.094 50.000 0.00 0.00 0.00 3.51
4832 5709 2.184533 TCGGCCTTTTATCCTGACTCA 58.815 47.619 0.00 0.00 0.00 3.41
4918 5803 5.144100 ACAAATCCAGGAACATACAAACCA 58.856 37.500 0.00 0.00 0.00 3.67
4921 5806 7.504238 ACAGTAACAAATCCAGGAACATACAAA 59.496 33.333 0.00 0.00 0.00 2.83
4924 5809 7.448748 AACAGTAACAAATCCAGGAACATAC 57.551 36.000 0.00 0.00 0.00 2.39
4933 5818 5.451242 GCAGGTTCAAACAGTAACAAATCCA 60.451 40.000 0.00 0.00 0.00 3.41
4934 5819 4.982295 GCAGGTTCAAACAGTAACAAATCC 59.018 41.667 0.00 0.00 0.00 3.01
4949 5834 1.977854 ACATCTACACAGGCAGGTTCA 59.022 47.619 0.00 0.00 0.00 3.18
5556 6451 6.237313 ACAGTTTGGCGAGTTTTAGAATAC 57.763 37.500 0.00 0.00 0.00 1.89
5724 6640 2.679639 GCACCACACCATCGGAAAGATA 60.680 50.000 0.00 0.00 37.52 1.98
5731 6647 0.171007 GAATTGCACCACACCATCGG 59.829 55.000 0.00 0.00 0.00 4.18
5863 6783 2.472488 GCCAAGCAGTCAATTTCAAACG 59.528 45.455 0.00 0.00 0.00 3.60
5904 6825 3.964688 TCAAACTGACACTAGGGACTGAA 59.035 43.478 0.00 0.00 41.52 3.02
6047 6968 2.248686 ACCACACTCCCTATCCATCTCT 59.751 50.000 0.00 0.00 0.00 3.10
6050 6971 2.398588 TGACCACACTCCCTATCCATC 58.601 52.381 0.00 0.00 0.00 3.51
6145 7066 3.904136 AACAATTGCGACTCTTTCCTG 57.096 42.857 5.05 0.00 0.00 3.86
6237 7159 8.696175 GGTTCACAATATTTTGTAAAGTTTCCG 58.304 33.333 0.96 0.00 44.24 4.30
6352 7286 5.996644 ACATCCGGAAACTGGACAAATATA 58.003 37.500 9.01 0.00 36.20 0.86
6355 7289 3.154827 ACATCCGGAAACTGGACAAAT 57.845 42.857 9.01 0.00 36.20 2.32
6440 7374 1.088340 CAGGTTCGCAGAGAGCATGG 61.088 60.000 0.00 0.00 46.13 3.66
6458 7392 0.397564 TTGAGGATGCTGTGCACTCA 59.602 50.000 19.41 15.87 43.04 3.41
6470 7404 1.918262 TCCCAGACAGCAATTGAGGAT 59.082 47.619 10.34 0.00 0.00 3.24
6524 7458 2.025155 TCGGCTGAAGATAGACTGGAC 58.975 52.381 0.00 0.00 0.00 4.02
6583 7519 3.378427 GGGGCAGATAAAATGTGACTGAC 59.622 47.826 0.00 0.00 36.07 3.51
6615 7551 8.181487 TGAATGCGTGTTCTAGTAATAAAGTC 57.819 34.615 0.00 0.00 0.00 3.01
6616 7552 8.718102 ATGAATGCGTGTTCTAGTAATAAAGT 57.282 30.769 0.00 0.00 0.00 2.66
6666 7602 2.149530 GGCATAGCCCTGGATGAGT 58.850 57.895 0.00 0.00 44.06 3.41
6794 7731 0.104120 CCAATGTCCATGCATGCAGG 59.896 55.000 26.69 25.77 0.00 4.85
6795 7732 1.107945 TCCAATGTCCATGCATGCAG 58.892 50.000 26.69 16.97 0.00 4.41
6796 7733 0.818938 GTCCAATGTCCATGCATGCA 59.181 50.000 25.04 25.04 0.00 3.96
6827 7764 1.128507 CGACCGTTTGTGTCATCATGG 59.871 52.381 0.00 0.00 32.91 3.66
6897 7834 3.454447 TGATTGTACTACCTGGTGATGGG 59.546 47.826 10.23 0.00 0.00 4.00
6945 7895 2.125106 CGCAGCTGTAGGGTTCCC 60.125 66.667 16.64 0.00 0.00 3.97
6987 7937 0.732880 CAAGAATGTGCTGCAGCTGC 60.733 55.000 36.61 31.89 42.66 5.25
6988 7938 0.732880 GCAAGAATGTGCTGCAGCTG 60.733 55.000 36.61 25.45 41.51 4.24
6989 7939 1.585006 GCAAGAATGTGCTGCAGCT 59.415 52.632 36.61 19.14 41.51 4.24
6990 7940 1.445582 GGCAAGAATGTGCTGCAGC 60.446 57.895 31.89 31.89 44.31 5.25
6991 7941 0.109272 CAGGCAAGAATGTGCTGCAG 60.109 55.000 10.11 10.11 44.31 4.41
6992 7942 1.961378 CAGGCAAGAATGTGCTGCA 59.039 52.632 0.00 0.00 44.31 4.41
6993 7943 1.445582 GCAGGCAAGAATGTGCTGC 60.446 57.895 0.00 0.00 44.31 5.25
6994 7944 0.601558 AAGCAGGCAAGAATGTGCTG 59.398 50.000 0.00 0.00 45.51 4.41
7006 7956 5.065859 ACAATTTTGTGGTTAAAAAGCAGGC 59.934 36.000 0.00 0.00 40.49 4.85
7032 7982 7.453729 ACGCCTCCGATGGTAACAGTAATAC 62.454 48.000 0.00 0.00 44.91 1.89
7034 7984 4.752890 ACGCCTCCGATGGTAACAGTAAT 61.753 47.826 0.00 0.00 44.91 1.89
7036 7986 1.956636 ACGCCTCCGATGGTAACAGTA 60.957 52.381 0.00 0.00 44.91 2.74
7037 7987 1.255667 ACGCCTCCGATGGTAACAGT 61.256 55.000 0.00 0.00 44.91 3.55
7039 7989 1.514087 GACGCCTCCGATGGTAACA 59.486 57.895 0.00 0.00 45.54 2.41
7040 7990 1.588139 CGACGCCTCCGATGGTAAC 60.588 63.158 0.00 0.00 38.29 2.50
7042 7992 2.438975 ACGACGCCTCCGATGGTA 60.439 61.111 0.00 0.00 38.29 3.25
7043 7993 3.823330 GACGACGCCTCCGATGGT 61.823 66.667 0.00 0.00 38.29 3.55
7045 7995 4.175489 ACGACGACGCCTCCGATG 62.175 66.667 7.30 0.00 43.96 3.84
7046 7996 4.175489 CACGACGACGCCTCCGAT 62.175 66.667 7.30 0.00 43.96 4.18
7055 8005 2.601763 ACAAAACTCTTGTCACGACGAC 59.398 45.455 0.00 0.00 45.61 4.34
7056 8006 2.883574 ACAAAACTCTTGTCACGACGA 58.116 42.857 0.00 0.00 0.00 4.20
7059 8009 7.204604 TCTATACAACAAAACTCTTGTCACGA 58.795 34.615 0.00 0.00 32.77 4.35
7060 8010 7.402811 TCTATACAACAAAACTCTTGTCACG 57.597 36.000 0.00 0.00 32.77 4.35
7061 8011 9.042008 TCTTCTATACAACAAAACTCTTGTCAC 57.958 33.333 0.00 0.00 32.77 3.67
7062 8012 9.607988 TTCTTCTATACAACAAAACTCTTGTCA 57.392 29.630 0.00 0.00 32.77 3.58
7064 8014 9.057089 CCTTCTTCTATACAACAAAACTCTTGT 57.943 33.333 0.00 0.00 34.89 3.16
7065 8015 8.507249 CCCTTCTTCTATACAACAAAACTCTTG 58.493 37.037 0.00 0.00 0.00 3.02
7066 8016 7.665974 CCCCTTCTTCTATACAACAAAACTCTT 59.334 37.037 0.00 0.00 0.00 2.85
7067 8017 7.017254 TCCCCTTCTTCTATACAACAAAACTCT 59.983 37.037 0.00 0.00 0.00 3.24
7068 8018 7.166167 TCCCCTTCTTCTATACAACAAAACTC 58.834 38.462 0.00 0.00 0.00 3.01
7069 8019 7.086685 TCCCCTTCTTCTATACAACAAAACT 57.913 36.000 0.00 0.00 0.00 2.66
7076 8029 4.444306 CGGCATTCCCCTTCTTCTATACAA 60.444 45.833 0.00 0.00 0.00 2.41
7087 8040 1.301954 GTACCACGGCATTCCCCTT 59.698 57.895 0.00 0.00 0.00 3.95
7088 8041 1.910580 CTGTACCACGGCATTCCCCT 61.911 60.000 0.00 0.00 0.00 4.79
7089 8042 1.451387 CTGTACCACGGCATTCCCC 60.451 63.158 0.00 0.00 0.00 4.81
7091 8044 1.066716 TGTACTGTACCACGGCATTCC 60.067 52.381 14.91 0.00 0.00 3.01
7093 8046 2.843401 TTGTACTGTACCACGGCATT 57.157 45.000 14.91 0.00 0.00 3.56
7094 8047 2.843401 TTTGTACTGTACCACGGCAT 57.157 45.000 14.91 0.00 0.00 4.40
7095 8048 2.843401 ATTTGTACTGTACCACGGCA 57.157 45.000 14.91 0.00 0.00 5.69
7097 8050 7.412237 GCTTACTTAATTTGTACTGTACCACGG 60.412 40.741 14.91 2.64 0.00 4.94
7098 8051 7.116662 TGCTTACTTAATTTGTACTGTACCACG 59.883 37.037 14.91 0.54 0.00 4.94
7099 8052 8.314143 TGCTTACTTAATTTGTACTGTACCAC 57.686 34.615 14.91 0.00 0.00 4.16
7100 8053 7.118680 GCTGCTTACTTAATTTGTACTGTACCA 59.881 37.037 14.91 1.42 0.00 3.25
7101 8054 7.461918 GCTGCTTACTTAATTTGTACTGTACC 58.538 38.462 14.91 0.00 0.00 3.34
7102 8055 7.171434 CGCTGCTTACTTAATTTGTACTGTAC 58.829 38.462 10.98 10.98 0.00 2.90
7103 8056 6.183360 GCGCTGCTTACTTAATTTGTACTGTA 60.183 38.462 0.00 0.00 0.00 2.74
7104 8057 5.390567 GCGCTGCTTACTTAATTTGTACTGT 60.391 40.000 0.00 0.00 0.00 3.55
7105 8058 5.022021 GCGCTGCTTACTTAATTTGTACTG 58.978 41.667 0.00 0.00 0.00 2.74
7106 8059 4.693566 TGCGCTGCTTACTTAATTTGTACT 59.306 37.500 9.73 0.00 0.00 2.73
7107 8060 4.786575 GTGCGCTGCTTACTTAATTTGTAC 59.213 41.667 9.73 0.00 0.00 2.90
7108 8061 4.142773 GGTGCGCTGCTTACTTAATTTGTA 60.143 41.667 9.73 0.00 0.00 2.41
7109 8062 3.365969 GGTGCGCTGCTTACTTAATTTGT 60.366 43.478 9.73 0.00 0.00 2.83
7110 8063 3.171277 GGTGCGCTGCTTACTTAATTTG 58.829 45.455 9.73 0.00 0.00 2.32
7111 8064 2.159572 CGGTGCGCTGCTTACTTAATTT 60.160 45.455 9.73 0.00 0.00 1.82
7112 8065 1.396996 CGGTGCGCTGCTTACTTAATT 59.603 47.619 9.73 0.00 0.00 1.40
7113 8066 1.006832 CGGTGCGCTGCTTACTTAAT 58.993 50.000 9.73 0.00 0.00 1.40
7115 8068 1.011968 CACGGTGCGCTGCTTACTTA 61.012 55.000 9.73 0.00 0.00 2.24
7116 8069 2.030562 ACGGTGCGCTGCTTACTT 59.969 55.556 9.73 0.00 0.00 2.24
7117 8070 2.738521 CACGGTGCGCTGCTTACT 60.739 61.111 9.73 0.00 0.00 2.24
7118 8071 4.445545 GCACGGTGCGCTGCTTAC 62.446 66.667 18.35 0.00 33.64 2.34
7151 8104 2.362736 TGAGCTGATTTGCACCATCTC 58.637 47.619 0.00 6.70 34.99 2.75
7155 8108 2.799017 AGAATGAGCTGATTTGCACCA 58.201 42.857 0.00 0.00 34.99 4.17
7163 8116 9.282569 GTCCATATCTTTTAAGAATGAGCTGAT 57.717 33.333 0.00 0.00 38.77 2.90
7164 8117 8.489489 AGTCCATATCTTTTAAGAATGAGCTGA 58.511 33.333 0.00 0.00 38.77 4.26
7166 8119 7.228308 GCAGTCCATATCTTTTAAGAATGAGCT 59.772 37.037 12.28 0.00 38.77 4.09
7167 8120 7.228308 AGCAGTCCATATCTTTTAAGAATGAGC 59.772 37.037 12.28 10.78 38.77 4.26
7168 8121 8.674263 AGCAGTCCATATCTTTTAAGAATGAG 57.326 34.615 12.28 6.55 38.77 2.90
7169 8122 7.439356 CGAGCAGTCCATATCTTTTAAGAATGA 59.561 37.037 12.28 0.00 38.77 2.57
7170 8123 7.439356 TCGAGCAGTCCATATCTTTTAAGAATG 59.561 37.037 0.00 2.98 38.77 2.67
7174 8140 7.307632 CCAATCGAGCAGTCCATATCTTTTAAG 60.308 40.741 0.00 0.00 0.00 1.85
7176 8142 5.991606 CCAATCGAGCAGTCCATATCTTTTA 59.008 40.000 0.00 0.00 0.00 1.52
7184 8150 2.045524 AGATCCAATCGAGCAGTCCAT 58.954 47.619 0.00 0.00 0.00 3.41
7189 8155 2.286067 GCGAAAAGATCCAATCGAGCAG 60.286 50.000 13.78 0.00 37.48 4.24
7204 8170 1.065199 AGGATGGCATCTCAGCGAAAA 60.065 47.619 25.48 0.00 34.64 2.29
7238 8205 1.956170 GCGATGGACAGCATACCGG 60.956 63.158 0.00 0.00 0.00 5.28
7275 8242 2.500098 TGCTACCACCAACATCTCTACC 59.500 50.000 0.00 0.00 0.00 3.18
7308 8279 1.063942 TCCTTGCGAGTAGGAGGATCA 60.064 52.381 0.00 0.00 36.88 2.92
7391 8366 1.443802 CGGACTGAGCTTTTCTTCCC 58.556 55.000 0.00 0.00 0.00 3.97
7471 8446 0.172578 CAGCTACCCACGTCGAATCA 59.827 55.000 0.00 0.00 0.00 2.57
7482 8457 1.069935 GGCCGAATCTCAGCTACCC 59.930 63.158 0.00 0.00 0.00 3.69
7523 8499 2.456119 CCATTCGGACAGCGACTGC 61.456 63.158 6.74 1.24 43.24 4.40
7529 8505 3.512516 GCAGCCCATTCGGACAGC 61.513 66.667 0.00 0.00 0.00 4.40
7546 8525 1.301479 GTTAGGCGGGCGGGATAAG 60.301 63.158 0.00 0.00 0.00 1.73
7553 8532 4.781959 TCGTTCGTTAGGCGGGCG 62.782 66.667 0.00 0.00 41.72 6.13
7592 8577 7.733969 TCCTTTTGGATGATCTAAGAGAGATG 58.266 38.462 10.06 0.00 43.84 2.90
7617 8603 4.282703 AGTGGTAGTAGTCACGGTGAAAAT 59.717 41.667 13.23 6.19 38.77 1.82
7675 8665 3.681897 GTGAAGAACAACAGCTCGATGAT 59.318 43.478 0.00 0.00 0.00 2.45
7691 8681 2.232452 GAGAGGCTGCTAACAGTGAAGA 59.768 50.000 0.00 0.00 46.30 2.87
7692 8682 2.615869 GAGAGGCTGCTAACAGTGAAG 58.384 52.381 0.00 0.00 46.30 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.