Multiple sequence alignment - TraesCS7D01G111800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G111800 chr7D 100.000 4250 0 0 1 4250 68789196 68793445 0.000000e+00 7849.0
1 TraesCS7D01G111800 chr7A 89.857 2021 89 58 547 2500 71146562 71144591 0.000000e+00 2490.0
2 TraesCS7D01G111800 chr7A 88.025 1453 84 41 2509 3911 71144540 71143128 0.000000e+00 1637.0
3 TraesCS7D01G111800 chr7A 85.196 331 23 13 3928 4244 71142809 71142491 2.470000e-82 316.0
4 TraesCS7D01G111800 chr7B 90.152 1909 103 38 363 2213 9749739 9751620 0.000000e+00 2405.0
5 TraesCS7D01G111800 chr7B 87.330 1247 71 41 2342 3507 9752086 9753326 0.000000e+00 1347.0
6 TraesCS7D01G111800 chr7B 88.353 601 35 13 3659 4249 9753454 9754029 0.000000e+00 689.0
7 TraesCS7D01G111800 chr7B 76.289 388 69 17 1093 1464 7358064 7357684 7.260000e-43 185.0
8 TraesCS7D01G111800 chr7B 79.845 129 23 3 366 493 566325332 566325458 1.630000e-14 91.6
9 TraesCS7D01G111800 chrUn 83.527 431 66 4 1708 2134 218155108 218155537 8.560000e-107 398.0
10 TraesCS7D01G111800 chrUn 83.527 431 66 4 1708 2134 246423261 246422832 8.560000e-107 398.0
11 TraesCS7D01G111800 chrUn 90.960 177 16 0 1084 1260 218154632 218154808 5.490000e-59 239.0
12 TraesCS7D01G111800 chrUn 90.960 177 16 0 1084 1260 246423737 246423561 5.490000e-59 239.0
13 TraesCS7D01G111800 chrUn 86.935 199 25 1 3025 3223 218156113 218156310 5.530000e-54 222.0
14 TraesCS7D01G111800 chrUn 87.565 193 23 1 3031 3223 246422250 246422059 5.530000e-54 222.0
15 TraesCS7D01G111800 chrUn 82.039 206 37 0 1260 1465 218154891 218155096 4.370000e-40 176.0
16 TraesCS7D01G111800 chrUn 82.039 206 37 0 1260 1465 246423478 246423273 4.370000e-40 176.0
17 TraesCS7D01G111800 chrUn 78.641 206 33 10 354 554 40740642 40740841 4.460000e-25 126.0
18 TraesCS7D01G111800 chrUn 78.641 206 33 10 354 554 40747263 40747064 4.460000e-25 126.0
19 TraesCS7D01G111800 chrUn 78.641 206 33 10 354 554 303400196 303400395 4.460000e-25 126.0
20 TraesCS7D01G111800 chr1B 84.906 318 43 4 1824 2137 634413319 634413003 2.470000e-82 316.0
21 TraesCS7D01G111800 chr1B 85.079 315 42 4 1824 2134 634601564 634601877 2.470000e-82 316.0
22 TraesCS7D01G111800 chr1B 88.835 206 22 1 3025 3229 634412497 634412292 7.050000e-63 252.0
23 TraesCS7D01G111800 chr1B 87.440 207 23 3 3025 3229 634602360 634602565 7.100000e-58 235.0
24 TraesCS7D01G111800 chr1B 89.831 177 18 0 1084 1260 634418777 634418601 1.190000e-55 228.0
25 TraesCS7D01G111800 chr1B 89.266 177 19 0 1084 1260 634600838 634601014 5.530000e-54 222.0
26 TraesCS7D01G111800 chr1B 82.927 205 35 0 1260 1464 634601091 634601295 7.260000e-43 185.0
27 TraesCS7D01G111800 chr1B 86.897 145 17 2 1872 2014 560252258 560252402 1.220000e-35 161.0
28 TraesCS7D01G111800 chr1B 80.374 214 25 13 739 951 658481406 658481603 3.420000e-31 147.0
29 TraesCS7D01G111800 chr1B 79.524 210 34 8 1052 1258 560251458 560251661 1.590000e-29 141.0
30 TraesCS7D01G111800 chr1B 84.404 109 17 0 1708 1816 634413581 634413473 1.620000e-19 108.0
31 TraesCS7D01G111800 chr1B 85.859 99 14 0 1718 1816 634601312 634601410 5.810000e-19 106.0
32 TraesCS7D01G111800 chr1B 81.250 96 16 2 425 519 657342722 657342816 4.560000e-10 76.8
33 TraesCS7D01G111800 chr1D 84.591 318 44 4 1824 2137 461486518 461486202 1.150000e-80 311.0
34 TraesCS7D01G111800 chr1D 83.217 286 48 0 1708 1993 461533522 461533237 3.260000e-66 263.0
35 TraesCS7D01G111800 chr1D 87.940 199 24 0 3031 3229 461506391 461506193 7.100000e-58 235.0
36 TraesCS7D01G111800 chr1D 87.437 199 25 0 3031 3229 461485719 461485521 3.310000e-56 230.0
37 TraesCS7D01G111800 chr1D 89.831 177 18 0 1084 1260 461487274 461487098 1.190000e-55 228.0
38 TraesCS7D01G111800 chr1D 84.615 182 28 0 1260 1441 461486985 461486804 9.390000e-42 182.0
39 TraesCS7D01G111800 chr1D 81.429 210 37 2 1260 1468 461533739 461533531 2.030000e-38 171.0
40 TraesCS7D01G111800 chr1D 79.904 209 33 8 1052 1257 414775654 414775856 1.230000e-30 145.0
41 TraesCS7D01G111800 chr1D 81.366 161 23 5 1986 2141 461507081 461506923 1.600000e-24 124.0
42 TraesCS7D01G111800 chr1D 84.545 110 15 2 1708 1816 461486774 461486666 1.620000e-19 108.0
43 TraesCS7D01G111800 chr1A 90.395 177 17 0 1084 1260 552952109 552951933 2.560000e-57 233.0
44 TraesCS7D01G111800 chr1A 86.935 199 26 0 3031 3229 552950547 552950349 1.540000e-54 224.0
45 TraesCS7D01G111800 chr1A 83.902 205 33 0 1260 1464 552951842 552951638 3.350000e-46 196.0
46 TraesCS7D01G111800 chr1A 79.147 211 33 10 1052 1258 511500043 511500246 7.410000e-28 135.0
47 TraesCS7D01G111800 chr1A 84.404 109 17 0 1708 1816 552951631 552951523 1.620000e-19 108.0
48 TraesCS7D01G111800 chr4D 79.861 144 27 2 411 553 1283033 1283175 2.090000e-18 104.0
49 TraesCS7D01G111800 chr3D 93.846 65 4 0 861 925 47138655 47138591 9.730000e-17 99.0
50 TraesCS7D01G111800 chr2D 76.471 204 32 11 363 558 547148916 547149111 3.500000e-16 97.1
51 TraesCS7D01G111800 chr5D 81.579 114 18 3 399 511 448661420 448661309 1.630000e-14 91.6
52 TraesCS7D01G111800 chr2A 75.728 206 34 11 363 560 690719928 690720125 5.850000e-14 89.8
53 TraesCS7D01G111800 chr5A 85.714 70 8 2 9 76 699779049 699778980 5.890000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G111800 chr7D 68789196 68793445 4249 False 7849.000000 7849 100.000000 1 4250 1 chr7D.!!$F1 4249
1 TraesCS7D01G111800 chr7A 71142491 71146562 4071 True 1481.000000 2490 87.692667 547 4244 3 chr7A.!!$R1 3697
2 TraesCS7D01G111800 chr7B 9749739 9754029 4290 False 1480.333333 2405 88.611667 363 4249 3 chr7B.!!$F2 3886
3 TraesCS7D01G111800 chrUn 218154632 218156310 1678 False 258.750000 398 85.865250 1084 3223 4 chrUn.!!$F3 2139
4 TraesCS7D01G111800 chrUn 246422059 246423737 1678 True 258.750000 398 86.022750 1084 3223 4 chrUn.!!$R2 2139
5 TraesCS7D01G111800 chr1B 634412292 634413581 1289 True 225.333333 316 86.048333 1708 3229 3 chr1B.!!$R2 1521
6 TraesCS7D01G111800 chr1B 634600838 634602565 1727 False 212.800000 316 86.114200 1084 3229 5 chr1B.!!$F4 2145
7 TraesCS7D01G111800 chr1D 461533237 461533739 502 True 217.000000 263 82.323000 1260 1993 2 chr1D.!!$R3 733
8 TraesCS7D01G111800 chr1D 461485521 461487274 1753 True 211.800000 311 86.203800 1084 3229 5 chr1D.!!$R1 2145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.025001 GACGATCGCAAATGGACACG 59.975 55.0 16.60 0.00 0.00 4.49 F
352 353 0.107643 TCGGTTGAATGGTGCTCACA 59.892 50.0 2.21 0.00 0.00 3.58 F
672 696 0.108992 CAGCAGCGTTGATTGCCATT 60.109 50.0 2.38 0.00 41.17 3.16 F
673 697 0.108992 AGCAGCGTTGATTGCCATTG 60.109 50.0 2.38 0.00 41.17 2.82 F
955 1004 0.114364 GATCCCTCCTCCTCCTCCTC 59.886 65.0 0.00 0.00 0.00 3.71 F
2358 3161 0.247736 AGTGGCAGTACTAGCAGTGC 59.752 55.0 13.58 13.58 42.95 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 2696 1.148310 CAGTCACGGCGAGTTTGAAT 58.852 50.0 16.62 2.50 0.00 2.57 R
2340 3143 0.037326 TGCACTGCTAGTACTGCCAC 60.037 55.0 5.39 0.00 0.00 5.01 R
2502 3322 0.179054 GGAAATCCCTACGGACAGGC 60.179 60.0 0.00 0.00 42.48 4.85 R
2505 3325 0.539986 GCAGGAAATCCCTACGGACA 59.460 55.0 0.00 0.00 45.60 4.02 R
2506 3326 0.179054 GGCAGGAAATCCCTACGGAC 60.179 60.0 0.00 0.00 45.60 4.79 R
3254 4372 0.251608 TGATCGACCAGTGGGAGTGA 60.252 55.0 15.21 5.75 38.05 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.305516 CCCACCTTTGGCAGCCAC 61.306 66.667 15.89 0.00 42.35 5.01
18 19 3.305516 CCACCTTTGGCAGCCACC 61.306 66.667 15.89 0.00 35.56 4.61
19 20 3.673484 CACCTTTGGCAGCCACCG 61.673 66.667 15.89 7.99 30.78 4.94
31 32 4.487412 CCACCGCCTACGTCGACC 62.487 72.222 10.58 0.00 37.70 4.79
32 33 3.437795 CACCGCCTACGTCGACCT 61.438 66.667 10.58 0.34 37.70 3.85
33 34 3.130160 ACCGCCTACGTCGACCTC 61.130 66.667 10.58 0.00 37.70 3.85
34 35 3.129502 CCGCCTACGTCGACCTCA 61.130 66.667 10.58 0.00 37.70 3.86
35 36 2.099831 CGCCTACGTCGACCTCAC 59.900 66.667 10.58 0.00 33.53 3.51
36 37 2.488820 GCCTACGTCGACCTCACC 59.511 66.667 10.58 0.00 0.00 4.02
37 38 2.338015 GCCTACGTCGACCTCACCA 61.338 63.158 10.58 0.00 0.00 4.17
38 39 1.664321 GCCTACGTCGACCTCACCAT 61.664 60.000 10.58 0.00 0.00 3.55
39 40 0.100682 CCTACGTCGACCTCACCATG 59.899 60.000 10.58 0.00 0.00 3.66
40 41 0.100682 CTACGTCGACCTCACCATGG 59.899 60.000 11.19 11.19 0.00 3.66
41 42 0.322726 TACGTCGACCTCACCATGGA 60.323 55.000 21.47 0.00 0.00 3.41
42 43 1.153823 CGTCGACCTCACCATGGAC 60.154 63.158 21.47 1.85 0.00 4.02
43 44 1.153823 GTCGACCTCACCATGGACG 60.154 63.158 21.47 9.32 42.29 4.79
44 45 1.303806 TCGACCTCACCATGGACGA 60.304 57.895 21.47 13.45 45.80 4.20
45 46 1.153823 CGACCTCACCATGGACGAC 60.154 63.158 21.47 3.68 43.24 4.34
46 47 1.153823 GACCTCACCATGGACGACG 60.154 63.158 21.47 10.59 0.00 5.12
47 48 1.592400 GACCTCACCATGGACGACGA 61.592 60.000 21.47 5.62 0.00 4.20
48 49 0.970937 ACCTCACCATGGACGACGAT 60.971 55.000 21.47 0.00 0.00 3.73
49 50 0.528466 CCTCACCATGGACGACGATG 60.528 60.000 21.47 4.07 33.16 3.84
50 51 0.455815 CTCACCATGGACGACGATGA 59.544 55.000 21.47 8.83 34.86 2.92
51 52 0.892063 TCACCATGGACGACGATGAA 59.108 50.000 21.47 0.00 34.86 2.57
52 53 1.135112 TCACCATGGACGACGATGAAG 60.135 52.381 21.47 3.92 34.86 3.02
53 54 1.135112 CACCATGGACGACGATGAAGA 60.135 52.381 21.47 0.00 34.86 2.87
54 55 1.135139 ACCATGGACGACGATGAAGAG 59.865 52.381 21.47 0.00 34.86 2.85
55 56 1.536922 CCATGGACGACGATGAAGAGG 60.537 57.143 5.56 0.00 34.86 3.69
56 57 1.405463 CATGGACGACGATGAAGAGGA 59.595 52.381 0.00 0.00 34.86 3.71
57 58 0.809385 TGGACGACGATGAAGAGGAC 59.191 55.000 0.00 0.00 0.00 3.85
58 59 0.248134 GGACGACGATGAAGAGGACG 60.248 60.000 0.00 0.00 0.00 4.79
59 60 0.862283 GACGACGATGAAGAGGACGC 60.862 60.000 0.00 0.00 0.00 5.19
60 61 1.934956 CGACGATGAAGAGGACGCG 60.935 63.158 3.53 3.53 0.00 6.01
61 62 1.586564 GACGATGAAGAGGACGCGG 60.587 63.158 12.47 0.00 0.00 6.46
62 63 2.956964 CGATGAAGAGGACGCGGC 60.957 66.667 12.47 7.53 0.00 6.53
63 64 2.184322 GATGAAGAGGACGCGGCA 59.816 61.111 17.00 0.00 0.00 5.69
64 65 1.447838 GATGAAGAGGACGCGGCAA 60.448 57.895 17.00 0.00 0.00 4.52
65 66 0.811616 GATGAAGAGGACGCGGCAAT 60.812 55.000 17.00 0.00 0.00 3.56
66 67 0.392998 ATGAAGAGGACGCGGCAATT 60.393 50.000 17.00 4.37 0.00 2.32
67 68 1.298157 TGAAGAGGACGCGGCAATTG 61.298 55.000 17.00 0.00 0.00 2.32
68 69 1.003839 AAGAGGACGCGGCAATTGA 60.004 52.632 17.00 0.00 0.00 2.57
69 70 0.605319 AAGAGGACGCGGCAATTGAA 60.605 50.000 17.00 0.00 0.00 2.69
70 71 1.021390 AGAGGACGCGGCAATTGAAG 61.021 55.000 17.00 2.77 0.00 3.02
71 72 1.003839 AGGACGCGGCAATTGAAGA 60.004 52.632 17.00 0.00 0.00 2.87
72 73 1.134694 GGACGCGGCAATTGAAGAC 59.865 57.895 17.00 0.00 0.00 3.01
73 74 1.225745 GACGCGGCAATTGAAGACG 60.226 57.895 7.34 9.15 0.00 4.18
74 75 2.098298 CGCGGCAATTGAAGACGG 59.902 61.111 10.34 0.00 0.00 4.79
75 76 2.202479 GCGGCAATTGAAGACGGC 60.202 61.111 10.34 3.66 0.00 5.68
76 77 2.485122 CGGCAATTGAAGACGGCC 59.515 61.111 10.34 0.00 41.20 6.13
77 78 2.331893 CGGCAATTGAAGACGGCCA 61.332 57.895 10.34 0.00 44.82 5.36
78 79 1.212751 GGCAATTGAAGACGGCCAC 59.787 57.895 10.34 0.00 44.01 5.01
79 80 2.527547 GGCAATTGAAGACGGCCACG 62.528 60.000 10.34 0.00 44.01 4.94
80 81 1.573829 GCAATTGAAGACGGCCACGA 61.574 55.000 10.34 0.00 44.60 4.35
81 82 0.165944 CAATTGAAGACGGCCACGAC 59.834 55.000 2.24 0.00 44.60 4.34
82 83 0.250124 AATTGAAGACGGCCACGACA 60.250 50.000 2.24 0.00 44.60 4.35
83 84 0.250124 ATTGAAGACGGCCACGACAA 60.250 50.000 2.24 8.60 44.60 3.18
84 85 1.155424 TTGAAGACGGCCACGACAAC 61.155 55.000 2.24 0.00 44.60 3.32
85 86 2.654912 GAAGACGGCCACGACAACG 61.655 63.158 2.24 0.00 44.60 4.10
86 87 4.657824 AGACGGCCACGACAACGG 62.658 66.667 2.24 0.00 44.60 4.44
96 97 3.799755 GACAACGGCGGCCATGAC 61.800 66.667 23.82 15.98 0.00 3.06
97 98 4.329545 ACAACGGCGGCCATGACT 62.330 61.111 23.82 4.37 0.00 3.41
98 99 3.055719 CAACGGCGGCCATGACTT 61.056 61.111 20.71 0.00 0.00 3.01
99 100 2.282180 AACGGCGGCCATGACTTT 60.282 55.556 20.71 0.00 0.00 2.66
100 101 1.901464 AACGGCGGCCATGACTTTT 60.901 52.632 20.71 0.00 0.00 2.27
101 102 2.141122 AACGGCGGCCATGACTTTTG 62.141 55.000 20.71 1.24 0.00 2.44
102 103 2.625823 CGGCGGCCATGACTTTTGT 61.626 57.895 20.71 0.00 0.00 2.83
103 104 1.080569 GGCGGCCATGACTTTTGTG 60.081 57.895 15.62 0.00 0.00 3.33
104 105 1.080569 GCGGCCATGACTTTTGTGG 60.081 57.895 2.24 0.00 36.09 4.17
105 106 1.523154 GCGGCCATGACTTTTGTGGA 61.523 55.000 2.24 0.00 34.94 4.02
106 107 0.240945 CGGCCATGACTTTTGTGGAC 59.759 55.000 2.24 0.00 37.69 4.02
107 108 1.620822 GGCCATGACTTTTGTGGACT 58.379 50.000 0.00 0.00 38.05 3.85
108 109 1.963515 GGCCATGACTTTTGTGGACTT 59.036 47.619 0.00 0.00 38.05 3.01
109 110 2.365293 GGCCATGACTTTTGTGGACTTT 59.635 45.455 0.00 0.00 38.05 2.66
110 111 3.181466 GGCCATGACTTTTGTGGACTTTT 60.181 43.478 0.00 0.00 38.05 2.27
111 112 4.441792 GCCATGACTTTTGTGGACTTTTT 58.558 39.130 0.00 0.00 34.94 1.94
112 113 5.452636 GGCCATGACTTTTGTGGACTTTTTA 60.453 40.000 0.00 0.00 38.05 1.52
113 114 6.045955 GCCATGACTTTTGTGGACTTTTTAA 58.954 36.000 0.00 0.00 34.94 1.52
114 115 6.200854 GCCATGACTTTTGTGGACTTTTTAAG 59.799 38.462 0.00 0.00 34.94 1.85
115 116 7.264947 CCATGACTTTTGTGGACTTTTTAAGT 58.735 34.615 0.00 0.00 46.38 2.24
116 117 7.763985 CCATGACTTTTGTGGACTTTTTAAGTT 59.236 33.333 0.00 0.00 43.03 2.66
117 118 9.150348 CATGACTTTTGTGGACTTTTTAAGTTT 57.850 29.630 0.00 0.00 43.03 2.66
119 120 9.628746 TGACTTTTGTGGACTTTTTAAGTTTAC 57.371 29.630 0.00 0.00 43.03 2.01
120 121 9.850628 GACTTTTGTGGACTTTTTAAGTTTACT 57.149 29.630 0.00 0.00 43.03 2.24
121 122 9.634163 ACTTTTGTGGACTTTTTAAGTTTACTG 57.366 29.630 0.00 0.00 43.03 2.74
122 123 9.634163 CTTTTGTGGACTTTTTAAGTTTACTGT 57.366 29.630 0.00 0.00 43.03 3.55
156 157 8.804912 TCATTTTAATTATTTTGCAATGCCCT 57.195 26.923 1.53 0.00 0.00 5.19
157 158 9.240734 TCATTTTAATTATTTTGCAATGCCCTT 57.759 25.926 1.53 0.00 0.00 3.95
158 159 9.857957 CATTTTAATTATTTTGCAATGCCCTTT 57.142 25.926 1.53 0.00 0.00 3.11
161 162 9.688592 TTTAATTATTTTGCAATGCCCTTTTTG 57.311 25.926 1.53 0.00 0.00 2.44
162 163 6.897706 ATTATTTTGCAATGCCCTTTTTGT 57.102 29.167 1.53 0.00 0.00 2.83
163 164 6.705863 TTATTTTGCAATGCCCTTTTTGTT 57.294 29.167 1.53 0.00 0.00 2.83
164 165 5.595257 ATTTTGCAATGCCCTTTTTGTTT 57.405 30.435 1.53 0.00 0.00 2.83
165 166 6.705863 ATTTTGCAATGCCCTTTTTGTTTA 57.294 29.167 1.53 0.00 0.00 2.01
166 167 6.515272 TTTTGCAATGCCCTTTTTGTTTAA 57.485 29.167 1.53 0.00 0.00 1.52
167 168 6.515272 TTTGCAATGCCCTTTTTGTTTAAA 57.485 29.167 1.53 0.00 0.00 1.52
168 169 6.705863 TTGCAATGCCCTTTTTGTTTAAAT 57.294 29.167 1.53 0.00 0.00 1.40
169 170 6.705863 TGCAATGCCCTTTTTGTTTAAATT 57.294 29.167 1.53 0.00 0.00 1.82
170 171 7.105241 TGCAATGCCCTTTTTGTTTAAATTT 57.895 28.000 1.53 0.00 0.00 1.82
171 172 8.225603 TGCAATGCCCTTTTTGTTTAAATTTA 57.774 26.923 1.53 0.00 0.00 1.40
172 173 8.686334 TGCAATGCCCTTTTTGTTTAAATTTAA 58.314 25.926 6.54 6.54 0.00 1.52
173 174 9.179552 GCAATGCCCTTTTTGTTTAAATTTAAG 57.820 29.630 10.40 0.00 0.00 1.85
176 177 8.439993 TGCCCTTTTTGTTTAAATTTAAGTCC 57.560 30.769 10.40 4.58 0.00 3.85
177 178 7.499563 TGCCCTTTTTGTTTAAATTTAAGTCCC 59.500 33.333 10.40 2.47 0.00 4.46
178 179 7.499563 GCCCTTTTTGTTTAAATTTAAGTCCCA 59.500 33.333 10.40 4.69 0.00 4.37
179 180 9.051679 CCCTTTTTGTTTAAATTTAAGTCCCAG 57.948 33.333 10.40 4.97 0.00 4.45
180 181 8.556194 CCTTTTTGTTTAAATTTAAGTCCCAGC 58.444 33.333 10.40 0.00 0.00 4.85
181 182 8.439993 TTTTTGTTTAAATTTAAGTCCCAGCC 57.560 30.769 10.40 0.00 0.00 4.85
182 183 6.732896 TTGTTTAAATTTAAGTCCCAGCCA 57.267 33.333 10.40 0.00 0.00 4.75
183 184 6.339587 TGTTTAAATTTAAGTCCCAGCCAG 57.660 37.500 10.40 0.00 0.00 4.85
184 185 6.071984 TGTTTAAATTTAAGTCCCAGCCAGA 58.928 36.000 10.40 0.00 0.00 3.86
185 186 6.015772 TGTTTAAATTTAAGTCCCAGCCAGAC 60.016 38.462 10.40 3.16 34.31 3.51
186 187 3.806949 AATTTAAGTCCCAGCCAGACA 57.193 42.857 1.74 0.00 36.68 3.41
187 188 3.806949 ATTTAAGTCCCAGCCAGACAA 57.193 42.857 1.74 0.00 36.68 3.18
188 189 3.586470 TTTAAGTCCCAGCCAGACAAA 57.414 42.857 1.74 0.00 36.68 2.83
189 190 3.806949 TTAAGTCCCAGCCAGACAAAT 57.193 42.857 1.74 0.00 36.68 2.32
190 191 2.206576 AAGTCCCAGCCAGACAAATC 57.793 50.000 1.74 0.00 36.68 2.17
191 192 1.366319 AGTCCCAGCCAGACAAATCT 58.634 50.000 1.74 0.00 36.68 2.40
192 193 1.707427 AGTCCCAGCCAGACAAATCTT 59.293 47.619 1.74 0.00 36.68 2.40
193 194 2.108952 AGTCCCAGCCAGACAAATCTTT 59.891 45.455 1.74 0.00 36.68 2.52
194 195 2.893489 GTCCCAGCCAGACAAATCTTTT 59.107 45.455 0.00 0.00 34.27 2.27
195 196 4.079253 GTCCCAGCCAGACAAATCTTTTA 58.921 43.478 0.00 0.00 34.27 1.52
196 197 4.522789 GTCCCAGCCAGACAAATCTTTTAA 59.477 41.667 0.00 0.00 34.27 1.52
197 198 5.010617 GTCCCAGCCAGACAAATCTTTTAAA 59.989 40.000 0.00 0.00 34.27 1.52
198 199 5.600484 TCCCAGCCAGACAAATCTTTTAAAA 59.400 36.000 0.00 0.00 30.42 1.52
199 200 6.269769 TCCCAGCCAGACAAATCTTTTAAAAT 59.730 34.615 0.09 0.00 30.42 1.82
200 201 6.369615 CCCAGCCAGACAAATCTTTTAAAATG 59.630 38.462 0.09 0.00 30.42 2.32
201 202 6.930722 CCAGCCAGACAAATCTTTTAAAATGT 59.069 34.615 0.09 2.90 30.42 2.71
202 203 7.095523 CCAGCCAGACAAATCTTTTAAAATGTG 60.096 37.037 9.12 0.86 30.42 3.21
203 204 6.930722 AGCCAGACAAATCTTTTAAAATGTGG 59.069 34.615 9.12 8.62 30.42 4.17
204 205 6.347644 GCCAGACAAATCTTTTAAAATGTGGC 60.348 38.462 17.29 17.29 30.42 5.01
205 206 6.128849 CCAGACAAATCTTTTAAAATGTGGCG 60.129 38.462 9.12 0.00 30.42 5.69
206 207 5.925969 AGACAAATCTTTTAAAATGTGGCGG 59.074 36.000 9.12 0.00 0.00 6.13
207 208 4.450757 ACAAATCTTTTAAAATGTGGCGGC 59.549 37.500 0.00 0.00 0.00 6.53
208 209 4.535526 AATCTTTTAAAATGTGGCGGCT 57.464 36.364 11.43 0.00 0.00 5.52
209 210 3.296322 TCTTTTAAAATGTGGCGGCTG 57.704 42.857 11.43 0.00 0.00 4.85
210 211 2.029470 TCTTTTAAAATGTGGCGGCTGG 60.029 45.455 11.43 0.00 0.00 4.85
211 212 1.333177 TTTAAAATGTGGCGGCTGGT 58.667 45.000 11.43 0.00 0.00 4.00
212 213 1.333177 TTAAAATGTGGCGGCTGGTT 58.667 45.000 11.43 0.00 0.00 3.67
213 214 0.600557 TAAAATGTGGCGGCTGGTTG 59.399 50.000 11.43 0.00 0.00 3.77
214 215 2.098426 AAAATGTGGCGGCTGGTTGG 62.098 55.000 11.43 0.00 0.00 3.77
215 216 2.992817 AAATGTGGCGGCTGGTTGGA 62.993 55.000 11.43 0.00 0.00 3.53
216 217 4.947147 TGTGGCGGCTGGTTGGAC 62.947 66.667 11.43 0.00 0.00 4.02
221 222 4.988598 CGGCTGGTTGGACGTGCT 62.989 66.667 8.99 0.00 32.39 4.40
222 223 3.357079 GGCTGGTTGGACGTGCTG 61.357 66.667 8.99 0.00 0.00 4.41
223 224 2.280797 GCTGGTTGGACGTGCTGA 60.281 61.111 8.99 0.00 0.00 4.26
224 225 2.607892 GCTGGTTGGACGTGCTGAC 61.608 63.158 8.99 7.10 0.00 3.51
237 238 4.907034 CTGACGGGCGGACGATCG 62.907 72.222 14.88 14.88 37.61 3.69
245 246 4.102561 CGGACGATCGCAAATGGA 57.897 55.556 16.60 0.00 0.00 3.41
246 247 1.636340 CGGACGATCGCAAATGGAC 59.364 57.895 16.60 0.00 0.00 4.02
247 248 1.081556 CGGACGATCGCAAATGGACA 61.082 55.000 16.60 0.00 0.00 4.02
248 249 0.373716 GGACGATCGCAAATGGACAC 59.626 55.000 16.60 0.00 0.00 3.67
249 250 0.025001 GACGATCGCAAATGGACACG 59.975 55.000 16.60 0.00 0.00 4.49
250 251 0.389296 ACGATCGCAAATGGACACGA 60.389 50.000 16.60 0.00 39.11 4.35
251 252 0.298707 CGATCGCAAATGGACACGAG 59.701 55.000 0.26 0.00 38.04 4.18
252 253 1.359848 GATCGCAAATGGACACGAGT 58.640 50.000 0.00 0.00 38.04 4.18
253 254 1.061131 GATCGCAAATGGACACGAGTG 59.939 52.381 1.13 1.13 38.04 3.51
264 265 0.951558 ACACGAGTGTCCATTTTGCC 59.048 50.000 2.62 0.00 40.24 4.52
265 266 0.950836 CACGAGTGTCCATTTTGCCA 59.049 50.000 0.00 0.00 0.00 4.92
266 267 1.336440 CACGAGTGTCCATTTTGCCAA 59.664 47.619 0.00 0.00 0.00 4.52
267 268 1.336755 ACGAGTGTCCATTTTGCCAAC 59.663 47.619 0.00 0.00 0.00 3.77
268 269 1.336440 CGAGTGTCCATTTTGCCAACA 59.664 47.619 0.00 0.00 0.00 3.33
269 270 2.742774 GAGTGTCCATTTTGCCAACAC 58.257 47.619 0.00 0.00 40.33 3.32
270 271 2.100584 GAGTGTCCATTTTGCCAACACA 59.899 45.455 6.70 0.00 42.01 3.72
271 272 2.499289 AGTGTCCATTTTGCCAACACAA 59.501 40.909 6.70 0.00 42.01 3.33
272 273 3.055530 AGTGTCCATTTTGCCAACACAAA 60.056 39.130 6.70 0.00 42.01 2.83
273 274 3.063316 GTGTCCATTTTGCCAACACAAAC 59.937 43.478 0.00 0.00 39.18 2.93
274 275 2.611751 GTCCATTTTGCCAACACAAACC 59.388 45.455 0.00 0.00 39.18 3.27
275 276 2.237143 TCCATTTTGCCAACACAAACCA 59.763 40.909 0.00 0.00 39.18 3.67
276 277 3.012518 CCATTTTGCCAACACAAACCAA 58.987 40.909 0.00 0.00 39.18 3.67
277 278 3.181502 CCATTTTGCCAACACAAACCAAC 60.182 43.478 0.00 0.00 39.18 3.77
278 279 2.839486 TTTGCCAACACAAACCAACA 57.161 40.000 0.00 0.00 34.68 3.33
279 280 2.839486 TTGCCAACACAAACCAACAA 57.161 40.000 0.00 0.00 0.00 2.83
280 281 2.839486 TGCCAACACAAACCAACAAA 57.161 40.000 0.00 0.00 0.00 2.83
281 282 3.126001 TGCCAACACAAACCAACAAAA 57.874 38.095 0.00 0.00 0.00 2.44
282 283 2.808543 TGCCAACACAAACCAACAAAAC 59.191 40.909 0.00 0.00 0.00 2.43
283 284 2.159774 GCCAACACAAACCAACAAAACG 60.160 45.455 0.00 0.00 0.00 3.60
284 285 2.413453 CCAACACAAACCAACAAAACGG 59.587 45.455 0.00 0.00 0.00 4.44
285 286 3.318017 CAACACAAACCAACAAAACGGA 58.682 40.909 0.00 0.00 0.00 4.69
286 287 2.949142 ACACAAACCAACAAAACGGAC 58.051 42.857 0.00 0.00 0.00 4.79
287 288 1.914700 CACAAACCAACAAAACGGACG 59.085 47.619 0.00 0.00 0.00 4.79
288 289 1.540707 ACAAACCAACAAAACGGACGT 59.459 42.857 0.00 0.00 0.00 4.34
289 290 2.178783 CAAACCAACAAAACGGACGTC 58.821 47.619 7.13 7.13 0.00 4.34
290 291 0.734309 AACCAACAAAACGGACGTCC 59.266 50.000 25.28 25.28 0.00 4.79
307 308 4.258932 CGTTGGCGGCCACGTTTT 62.259 61.111 23.78 0.00 43.45 2.43
308 309 2.656973 GTTGGCGGCCACGTTTTG 60.657 61.111 23.78 0.00 43.45 2.44
317 318 4.157607 CACGTTTTGGAGTGGCCT 57.842 55.556 3.32 0.00 37.63 5.19
318 319 3.315765 CACGTTTTGGAGTGGCCTA 57.684 52.632 3.32 0.00 37.63 3.93
319 320 1.600023 CACGTTTTGGAGTGGCCTAA 58.400 50.000 3.32 0.00 37.63 2.69
320 321 1.950909 CACGTTTTGGAGTGGCCTAAA 59.049 47.619 3.32 0.00 38.72 1.85
321 322 2.556622 CACGTTTTGGAGTGGCCTAAAT 59.443 45.455 3.32 0.00 42.05 1.40
322 323 3.005367 CACGTTTTGGAGTGGCCTAAATT 59.995 43.478 3.32 0.00 42.05 1.82
323 324 3.005367 ACGTTTTGGAGTGGCCTAAATTG 59.995 43.478 3.32 0.00 42.05 2.32
324 325 3.613910 CGTTTTGGAGTGGCCTAAATTGG 60.614 47.826 3.32 0.00 42.05 3.16
325 326 2.230130 TTGGAGTGGCCTAAATTGGG 57.770 50.000 3.32 0.00 37.63 4.12
326 327 0.334676 TGGAGTGGCCTAAATTGGGG 59.665 55.000 3.32 0.00 37.63 4.96
334 335 2.917933 GCCTAAATTGGGGCCATTTTC 58.082 47.619 4.39 0.00 42.30 2.29
335 336 2.741553 GCCTAAATTGGGGCCATTTTCG 60.742 50.000 4.39 0.00 42.30 3.46
336 337 2.158971 CCTAAATTGGGGCCATTTTCGG 60.159 50.000 4.39 3.67 33.42 4.30
337 338 1.357137 AAATTGGGGCCATTTTCGGT 58.643 45.000 4.39 0.00 0.00 4.69
338 339 1.357137 AATTGGGGCCATTTTCGGTT 58.643 45.000 4.39 0.00 0.00 4.44
339 340 0.612744 ATTGGGGCCATTTTCGGTTG 59.387 50.000 4.39 0.00 0.00 3.77
340 341 0.470080 TTGGGGCCATTTTCGGTTGA 60.470 50.000 4.39 0.00 0.00 3.18
341 342 0.470080 TGGGGCCATTTTCGGTTGAA 60.470 50.000 4.39 0.00 0.00 2.69
342 343 0.901827 GGGGCCATTTTCGGTTGAAT 59.098 50.000 4.39 0.00 33.20 2.57
343 344 1.405391 GGGGCCATTTTCGGTTGAATG 60.405 52.381 4.39 0.00 33.20 2.67
347 348 2.336667 CCATTTTCGGTTGAATGGTGC 58.663 47.619 6.89 0.00 44.61 5.01
348 349 2.029110 CCATTTTCGGTTGAATGGTGCT 60.029 45.455 6.89 0.00 44.61 4.40
349 350 3.244976 CATTTTCGGTTGAATGGTGCTC 58.755 45.455 0.00 0.00 33.20 4.26
350 351 1.974265 TTTCGGTTGAATGGTGCTCA 58.026 45.000 0.00 0.00 33.20 4.26
351 352 1.234821 TTCGGTTGAATGGTGCTCAC 58.765 50.000 0.00 0.00 0.00 3.51
352 353 0.107643 TCGGTTGAATGGTGCTCACA 59.892 50.000 2.21 0.00 0.00 3.58
353 354 1.167851 CGGTTGAATGGTGCTCACAT 58.832 50.000 2.21 0.00 0.00 3.21
354 355 1.541147 CGGTTGAATGGTGCTCACATT 59.459 47.619 2.21 0.00 40.98 2.71
355 356 2.030007 CGGTTGAATGGTGCTCACATTT 60.030 45.455 2.21 0.00 38.57 2.32
356 357 3.552684 CGGTTGAATGGTGCTCACATTTT 60.553 43.478 2.21 0.00 38.57 1.82
357 358 3.989817 GGTTGAATGGTGCTCACATTTTC 59.010 43.478 2.21 2.97 38.57 2.29
358 359 3.557577 TGAATGGTGCTCACATTTTCG 57.442 42.857 2.21 0.00 38.57 3.46
359 360 2.228582 TGAATGGTGCTCACATTTTCGG 59.771 45.455 2.21 0.00 38.57 4.30
360 361 1.909700 ATGGTGCTCACATTTTCGGT 58.090 45.000 2.21 0.00 0.00 4.69
361 362 1.686355 TGGTGCTCACATTTTCGGTT 58.314 45.000 2.21 0.00 0.00 4.44
362 363 1.336440 TGGTGCTCACATTTTCGGTTG 59.664 47.619 2.21 0.00 0.00 3.77
363 364 1.606668 GGTGCTCACATTTTCGGTTGA 59.393 47.619 2.21 0.00 0.00 3.18
364 365 2.228822 GGTGCTCACATTTTCGGTTGAT 59.771 45.455 2.21 0.00 0.00 2.57
365 366 3.305335 GGTGCTCACATTTTCGGTTGATT 60.305 43.478 2.21 0.00 0.00 2.57
366 367 4.298332 GTGCTCACATTTTCGGTTGATTT 58.702 39.130 0.00 0.00 0.00 2.17
372 373 5.457148 TCACATTTTCGGTTGATTTTGTTCG 59.543 36.000 0.00 0.00 0.00 3.95
376 377 1.604755 TCGGTTGATTTTGTTCGGTGG 59.395 47.619 0.00 0.00 0.00 4.61
380 381 1.904287 TGATTTTGTTCGGTGGGAGG 58.096 50.000 0.00 0.00 0.00 4.30
382 383 2.084546 GATTTTGTTCGGTGGGAGGAG 58.915 52.381 0.00 0.00 0.00 3.69
384 385 1.358152 TTTGTTCGGTGGGAGGAGAT 58.642 50.000 0.00 0.00 0.00 2.75
403 404 3.827302 AGATGTTCACCTCAACTACGAGT 59.173 43.478 0.00 0.00 0.00 4.18
404 405 4.281182 AGATGTTCACCTCAACTACGAGTT 59.719 41.667 0.00 0.00 39.39 3.01
430 431 3.824443 TCTGGTGTACTTCGTCAATCTCA 59.176 43.478 0.00 0.00 0.00 3.27
432 433 5.047306 TCTGGTGTACTTCGTCAATCTCAAT 60.047 40.000 0.00 0.00 0.00 2.57
436 437 6.292381 GGTGTACTTCGTCAATCTCAATATGC 60.292 42.308 0.00 0.00 0.00 3.14
441 442 6.146837 ACTTCGTCAATCTCAATATGCTATGC 59.853 38.462 0.00 0.00 0.00 3.14
443 444 4.201656 CGTCAATCTCAATATGCTATGCCG 60.202 45.833 0.00 0.00 0.00 5.69
449 450 1.736126 CAATATGCTATGCCGGCTCAG 59.264 52.381 29.70 23.95 0.00 3.35
455 456 0.749649 CTATGCCGGCTCAGTCTCTT 59.250 55.000 29.70 3.51 0.00 2.85
456 457 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
457 458 2.125350 GCCGGCTCAGTCTCTTGG 60.125 66.667 22.15 0.00 0.00 3.61
463 464 0.972883 GCTCAGTCTCTTGGAGGTGT 59.027 55.000 0.00 0.00 0.00 4.16
466 467 2.630098 CTCAGTCTCTTGGAGGTGTTCA 59.370 50.000 0.00 0.00 0.00 3.18
471 472 5.026121 AGTCTCTTGGAGGTGTTCATATGA 58.974 41.667 0.00 0.00 0.00 2.15
479 480 7.437713 TGGAGGTGTTCATATGAATAGAGTT 57.562 36.000 20.65 5.78 36.33 3.01
483 484 8.498054 AGGTGTTCATATGAATAGAGTTTGTG 57.502 34.615 20.65 0.00 36.33 3.33
484 485 8.103305 AGGTGTTCATATGAATAGAGTTTGTGT 58.897 33.333 20.65 0.00 36.33 3.72
485 486 8.177663 GGTGTTCATATGAATAGAGTTTGTGTG 58.822 37.037 20.65 0.00 36.33 3.82
490 491 7.877612 TCATATGAATAGAGTTTGTGTGTGTGT 59.122 33.333 1.98 0.00 0.00 3.72
493 494 6.781138 TGAATAGAGTTTGTGTGTGTGTTTC 58.219 36.000 0.00 0.00 0.00 2.78
498 499 5.650266 AGAGTTTGTGTGTGTGTTTCCATAA 59.350 36.000 0.00 0.00 0.00 1.90
507 508 5.003160 TGTGTGTTTCCATAAGGATGAGTG 58.997 41.667 0.00 0.00 45.26 3.51
508 509 4.396166 GTGTGTTTCCATAAGGATGAGTGG 59.604 45.833 0.00 0.00 45.26 4.00
514 515 7.092444 TGTTTCCATAAGGATGAGTGGATACTT 60.092 37.037 12.64 0.00 45.26 2.24
515 516 6.425210 TCCATAAGGATGAGTGGATACTTG 57.575 41.667 0.00 0.00 39.61 3.16
520 521 5.599999 AGGATGAGTGGATACTTGTGTAC 57.400 43.478 0.00 0.00 37.25 2.90
521 522 4.098044 AGGATGAGTGGATACTTGTGTACG 59.902 45.833 0.00 0.00 37.25 3.67
532 533 1.714460 CTTGTGTACGTGAGCGACTTC 59.286 52.381 0.00 0.00 42.00 3.01
533 534 0.664224 TGTGTACGTGAGCGACTTCA 59.336 50.000 0.00 0.00 42.00 3.02
535 536 2.287970 TGTGTACGTGAGCGACTTCAAT 60.288 45.455 0.00 0.00 42.00 2.57
537 538 3.916172 GTGTACGTGAGCGACTTCAATTA 59.084 43.478 0.00 0.00 42.00 1.40
544 545 5.275927 CGTGAGCGACTTCAATTATACTGTG 60.276 44.000 0.00 0.00 41.33 3.66
547 548 7.274904 GTGAGCGACTTCAATTATACTGTGTTA 59.725 37.037 0.00 0.00 0.00 2.41
625 649 2.377193 ACTCCCTCACTCACACTAGACT 59.623 50.000 0.00 0.00 0.00 3.24
629 653 3.417101 CCTCACTCACACTAGACTGACT 58.583 50.000 0.00 0.00 0.00 3.41
672 696 0.108992 CAGCAGCGTTGATTGCCATT 60.109 50.000 2.38 0.00 41.17 3.16
673 697 0.108992 AGCAGCGTTGATTGCCATTG 60.109 50.000 2.38 0.00 41.17 2.82
674 698 1.689352 GCAGCGTTGATTGCCATTGC 61.689 55.000 2.38 0.00 34.28 3.56
675 699 1.079875 CAGCGTTGATTGCCATTGCC 61.080 55.000 0.00 0.00 36.33 4.52
697 721 1.453015 GCCATTGCCATGTACCGGA 60.453 57.895 9.46 0.00 0.00 5.14
928 976 4.064491 GTCGCAGCGAGCACACAC 62.064 66.667 20.23 0.42 46.13 3.82
938 987 0.320771 GAGCACACACCACCTTCGAT 60.321 55.000 0.00 0.00 0.00 3.59
951 1000 0.187361 CTTCGATCCCTCCTCCTCCT 59.813 60.000 0.00 0.00 0.00 3.69
955 1004 0.114364 GATCCCTCCTCCTCCTCCTC 59.886 65.000 0.00 0.00 0.00 3.71
956 1005 1.376249 ATCCCTCCTCCTCCTCCTCC 61.376 65.000 0.00 0.00 0.00 4.30
957 1006 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
959 1008 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
960 1009 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
963 1012 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
967 1016 1.002792 CCTCCTCCTCCTCCTGCTT 59.997 63.158 0.00 0.00 0.00 3.91
970 1019 0.415429 TCCTCCTCCTCCTGCTTCTT 59.585 55.000 0.00 0.00 0.00 2.52
972 1021 1.622173 CCTCCTCCTCCTGCTTCTTCT 60.622 57.143 0.00 0.00 0.00 2.85
974 1023 1.360852 TCCTCCTCCTGCTTCTTCTCT 59.639 52.381 0.00 0.00 0.00 3.10
980 1029 0.452184 CCTGCTTCTTCTCTCGCGTA 59.548 55.000 5.77 0.00 0.00 4.42
981 1030 1.540407 CTGCTTCTTCTCTCGCGTAC 58.460 55.000 5.77 0.00 0.00 3.67
982 1031 0.879090 TGCTTCTTCTCTCGCGTACA 59.121 50.000 5.77 0.00 0.00 2.90
987 1036 2.254703 CTTCTCTCGCGTACACGGCT 62.255 60.000 5.77 0.00 40.23 5.52
988 1037 2.523184 TTCTCTCGCGTACACGGCTG 62.523 60.000 5.77 0.00 40.23 4.85
989 1038 4.771356 TCTCGCGTACACGGCTGC 62.771 66.667 5.77 0.00 40.23 5.25
1009 1058 2.571757 GTGTGACGATGGCGAGGA 59.428 61.111 0.00 0.00 41.64 3.71
1317 1575 1.301401 CACCTCCGCCGACTTCAAA 60.301 57.895 0.00 0.00 0.00 2.69
1490 1757 1.003573 AGTCCTCCCCTCCCATCAC 59.996 63.158 0.00 0.00 0.00 3.06
1639 1907 2.610694 CCGCTGCCGCCATTGATAG 61.611 63.158 0.00 0.00 0.00 2.08
1679 1951 1.735973 GGCCTGGCGAATTGATTCC 59.264 57.895 13.40 0.00 33.28 3.01
1680 1952 1.037030 GGCCTGGCGAATTGATTCCA 61.037 55.000 13.40 0.00 33.28 3.53
1682 1954 1.269413 GCCTGGCGAATTGATTCCATG 60.269 52.381 1.35 0.00 33.28 3.66
1683 1955 1.338973 CCTGGCGAATTGATTCCATGG 59.661 52.381 4.97 4.97 33.28 3.66
1684 1956 2.300433 CTGGCGAATTGATTCCATGGA 58.700 47.619 11.44 11.44 33.28 3.41
1685 1957 2.023673 TGGCGAATTGATTCCATGGAC 58.976 47.619 15.91 4.42 33.28 4.02
1687 1959 1.338020 GCGAATTGATTCCATGGACCC 59.662 52.381 15.91 9.82 33.28 4.46
1689 1961 3.747388 GCGAATTGATTCCATGGACCCTA 60.747 47.826 15.91 6.55 33.28 3.53
1690 1962 4.460263 CGAATTGATTCCATGGACCCTAA 58.540 43.478 15.91 8.11 33.28 2.69
1691 1963 4.275936 CGAATTGATTCCATGGACCCTAAC 59.724 45.833 15.91 0.00 33.28 2.34
1692 1964 3.662759 TTGATTCCATGGACCCTAACC 57.337 47.619 15.91 0.00 0.00 2.85
2174 2624 5.717038 CATGATTTCATGCACACGTACTA 57.283 39.130 7.56 0.00 45.92 1.82
2175 2625 5.492854 CATGATTTCATGCACACGTACTAC 58.507 41.667 7.56 0.00 45.92 2.73
2176 2626 4.816392 TGATTTCATGCACACGTACTACT 58.184 39.130 0.00 0.00 0.00 2.57
2178 2628 2.933495 TCATGCACACGTACTACTCC 57.067 50.000 0.00 0.00 0.00 3.85
2221 2677 0.392060 TGGCGTCTAGTCGACTAGCA 60.392 55.000 37.02 28.24 44.24 3.49
2325 3128 4.803426 CGCCCGTCCTGCTCTGTC 62.803 72.222 0.00 0.00 0.00 3.51
2327 3130 2.681778 CCCGTCCTGCTCTGTCCT 60.682 66.667 0.00 0.00 0.00 3.85
2328 3131 2.575993 CCGTCCTGCTCTGTCCTG 59.424 66.667 0.00 0.00 0.00 3.86
2329 3132 2.575993 CGTCCTGCTCTGTCCTGG 59.424 66.667 0.00 0.00 0.00 4.45
2331 3134 2.203832 TCCTGCTCTGTCCTGGCA 60.204 61.111 0.00 0.00 34.66 4.92
2333 3136 3.067091 CTGCTCTGTCCTGGCAGT 58.933 61.111 14.43 0.00 45.59 4.40
2334 3137 1.375652 CTGCTCTGTCCTGGCAGTG 60.376 63.158 14.43 13.69 45.59 3.66
2335 3138 2.745492 GCTCTGTCCTGGCAGTGC 60.745 66.667 20.74 20.74 44.81 4.40
2336 3139 2.433838 CTCTGTCCTGGCAGTGCG 60.434 66.667 14.43 0.00 37.70 5.34
2337 3140 3.947132 CTCTGTCCTGGCAGTGCGG 62.947 68.421 14.43 10.54 37.70 5.69
2350 3153 3.625897 TGCGGCAGTGGCAGTACT 61.626 61.111 17.80 0.00 43.71 2.73
2358 3161 0.247736 AGTGGCAGTACTAGCAGTGC 59.752 55.000 13.58 13.58 42.95 4.40
2367 3170 4.393155 TAGCAGTGCAGCACGGGG 62.393 66.667 24.70 16.88 39.64 5.73
2384 3187 3.364441 GCAAGCATGGTGCCGTGA 61.364 61.111 14.13 0.00 46.52 4.35
2385 3188 2.703798 GCAAGCATGGTGCCGTGAT 61.704 57.895 14.13 4.96 46.52 3.06
2386 3189 1.885157 CAAGCATGGTGCCGTGATT 59.115 52.632 14.13 11.04 46.52 2.57
2411 3221 7.556733 AATGTAGGATTATTCGGCGTTTAAA 57.443 32.000 6.85 0.00 0.00 1.52
2423 3233 0.865769 CGTTTAAAGGCTCGTGCACT 59.134 50.000 16.19 3.35 41.91 4.40
2437 3257 1.135257 GTGCACTATCGAGCAGTGAGT 60.135 52.381 26.01 5.80 45.10 3.41
2438 3258 1.546029 TGCACTATCGAGCAGTGAGTT 59.454 47.619 26.01 0.00 45.10 3.01
2507 3327 3.249805 TGGTCACCACATGCCTGT 58.750 55.556 0.00 0.00 35.44 4.00
2740 3608 3.054728 GGGGAAAATAATGGGGTTTGGTG 60.055 47.826 0.00 0.00 0.00 4.17
2928 3988 0.524414 TACACAGGACGTCACGGATG 59.476 55.000 18.91 10.07 0.00 3.51
2929 3989 1.446099 CACAGGACGTCACGGATGG 60.446 63.158 18.91 0.59 0.00 3.51
2932 3992 0.528466 CAGGACGTCACGGATGGATG 60.528 60.000 18.91 0.00 0.00 3.51
2933 3993 1.883084 GGACGTCACGGATGGATGC 60.883 63.158 18.91 0.00 0.00 3.91
2937 3997 1.522092 GTCACGGATGGATGCTGGA 59.478 57.895 0.00 0.00 0.00 3.86
2938 3998 0.107456 GTCACGGATGGATGCTGGAT 59.893 55.000 0.00 0.00 0.00 3.41
2940 4000 1.228063 ACGGATGGATGCTGGATGC 60.228 57.895 0.00 0.00 43.25 3.91
2941 4001 2.322830 CGGATGGATGCTGGATGCG 61.323 63.158 0.00 0.00 46.63 4.73
2943 4003 1.071987 GATGGATGCTGGATGCGGA 59.928 57.895 0.00 0.00 46.63 5.54
3017 4129 0.678950 TGATCTTGCTCGTGTGTGGA 59.321 50.000 0.00 0.00 0.00 4.02
3051 4169 0.535102 CAGGGTTCAGCTCGGTGTTT 60.535 55.000 0.00 0.00 0.00 2.83
3254 4372 1.604378 GCATCACCCACTAGCCAGT 59.396 57.895 0.00 0.00 34.42 4.00
3281 4399 2.625737 CACTGGTCGATCAATCAGCTT 58.374 47.619 0.00 0.00 0.00 3.74
3322 4440 8.047413 TGGATCCATCATTAATCAATCAATCG 57.953 34.615 11.44 0.00 0.00 3.34
3372 4494 8.954950 TTATTTGTTCGGTCGGGTTAATTATA 57.045 30.769 0.00 0.00 0.00 0.98
3384 4509 7.693536 GTCGGGTTAATTATAAGGAAACGTTTG 59.306 37.037 20.10 0.00 0.00 2.93
3443 4583 0.884259 TGCGTGTGTGGTGATGAAGG 60.884 55.000 0.00 0.00 0.00 3.46
3481 4621 3.187700 GGCAACTGTCGTGGAATAGTAG 58.812 50.000 0.00 0.00 0.00 2.57
3487 4627 4.041740 TGTCGTGGAATAGTAGTGCATC 57.958 45.455 0.00 0.00 0.00 3.91
3534 4704 9.657419 AATCTGATAATTGTTTTGTTCCATTCC 57.343 29.630 0.00 0.00 0.00 3.01
3535 4705 8.187913 TCTGATAATTGTTTTGTTCCATTCCA 57.812 30.769 0.00 0.00 0.00 3.53
3545 4715 6.017192 GTTTTGTTCCATTCCATGGGAAAAAG 60.017 38.462 13.02 0.00 44.16 2.27
3580 4754 9.284594 CAGTTGAGTGAAAACGAAAGAAATAAA 57.715 29.630 0.00 0.00 32.65 1.40
3581 4755 9.285770 AGTTGAGTGAAAACGAAAGAAATAAAC 57.714 29.630 0.00 0.00 32.65 2.01
3583 4757 8.609478 TGAGTGAAAACGAAAGAAATAAACAC 57.391 30.769 0.00 0.00 0.00 3.32
3584 4758 7.427030 TGAGTGAAAACGAAAGAAATAAACACG 59.573 33.333 0.00 0.00 0.00 4.49
3586 4760 8.126700 AGTGAAAACGAAAGAAATAAACACGAT 58.873 29.630 0.00 0.00 0.00 3.73
3624 4799 4.093952 CTTTCTGGCGTGGCAGCG 62.094 66.667 17.72 5.82 38.18 5.18
3935 5424 4.282703 AGTGGTAGTAGTCACGGTGAAAAT 59.717 41.667 13.23 6.19 38.77 1.82
3960 5450 7.733969 TCCTTTTGGATGATCTAAGAGAGATG 58.266 38.462 10.06 0.00 43.84 2.90
3999 5495 4.781959 TCGTTCGTTAGGCGGGCG 62.782 66.667 0.00 0.00 41.72 6.13
4006 5502 1.301479 GTTAGGCGGGCGGGATAAG 60.301 63.158 0.00 0.00 0.00 1.73
4023 5522 3.512516 GCAGCCCATTCGGACAGC 61.513 66.667 0.00 0.00 0.00 4.40
4029 5528 2.456119 CCATTCGGACAGCGACTGC 61.456 63.158 6.74 1.24 43.24 4.40
4070 5570 1.069935 GGCCGAATCTCAGCTACCC 59.930 63.158 0.00 0.00 0.00 3.69
4081 5581 0.172578 CAGCTACCCACGTCGAATCA 59.827 55.000 0.00 0.00 0.00 2.57
4161 5661 1.443802 CGGACTGAGCTTTTCTTCCC 58.556 55.000 0.00 0.00 0.00 3.97
4244 5748 1.063942 TCCTTGCGAGTAGGAGGATCA 60.064 52.381 0.00 0.00 36.88 2.92
4249 5753 1.273886 GCGAGTAGGAGGATCATTCCC 59.726 57.143 10.89 0.00 43.76 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.305516 GTGGCTGCCAAAGGTGGG 61.306 66.667 25.23 0.00 46.09 4.61
2 3 3.673484 CGGTGGCTGCCAAAGGTG 61.673 66.667 25.23 7.69 34.18 4.00
14 15 4.487412 GGTCGACGTAGGCGGTGG 62.487 72.222 9.92 0.00 43.45 4.61
15 16 3.392595 GAGGTCGACGTAGGCGGTG 62.393 68.421 11.30 0.00 43.45 4.94
16 17 3.130160 GAGGTCGACGTAGGCGGT 61.130 66.667 11.30 0.00 43.45 5.68
17 18 3.129502 TGAGGTCGACGTAGGCGG 61.130 66.667 11.30 0.00 43.45 6.13
18 19 2.099831 GTGAGGTCGACGTAGGCG 59.900 66.667 11.30 0.00 44.93 5.52
19 20 1.664321 ATGGTGAGGTCGACGTAGGC 61.664 60.000 11.30 4.38 0.00 3.93
20 21 0.100682 CATGGTGAGGTCGACGTAGG 59.899 60.000 11.30 0.00 0.00 3.18
21 22 0.100682 CCATGGTGAGGTCGACGTAG 59.899 60.000 11.30 0.00 0.00 3.51
22 23 0.322726 TCCATGGTGAGGTCGACGTA 60.323 55.000 12.58 0.00 0.00 3.57
23 24 1.605451 TCCATGGTGAGGTCGACGT 60.605 57.895 11.12 11.12 0.00 4.34
24 25 1.153823 GTCCATGGTGAGGTCGACG 60.154 63.158 12.58 0.00 0.00 5.12
25 26 1.153823 CGTCCATGGTGAGGTCGAC 60.154 63.158 12.58 7.13 39.49 4.20
26 27 1.303806 TCGTCCATGGTGAGGTCGA 60.304 57.895 12.58 10.48 42.68 4.20
27 28 1.153823 GTCGTCCATGGTGAGGTCG 60.154 63.158 12.58 8.44 38.69 4.79
28 29 1.153823 CGTCGTCCATGGTGAGGTC 60.154 63.158 12.58 0.00 0.00 3.85
29 30 0.970937 ATCGTCGTCCATGGTGAGGT 60.971 55.000 12.58 5.46 0.00 3.85
30 31 0.528466 CATCGTCGTCCATGGTGAGG 60.528 60.000 12.58 15.81 0.00 3.86
31 32 0.455815 TCATCGTCGTCCATGGTGAG 59.544 55.000 12.58 4.59 0.00 3.51
32 33 0.892063 TTCATCGTCGTCCATGGTGA 59.108 50.000 12.58 8.52 28.26 4.02
33 34 1.135112 TCTTCATCGTCGTCCATGGTG 60.135 52.381 12.58 6.00 0.00 4.17
34 35 1.135139 CTCTTCATCGTCGTCCATGGT 59.865 52.381 12.58 0.00 0.00 3.55
35 36 1.536922 CCTCTTCATCGTCGTCCATGG 60.537 57.143 4.97 4.97 0.00 3.66
36 37 1.405463 TCCTCTTCATCGTCGTCCATG 59.595 52.381 0.00 0.00 0.00 3.66
37 38 1.405821 GTCCTCTTCATCGTCGTCCAT 59.594 52.381 0.00 0.00 0.00 3.41
38 39 0.809385 GTCCTCTTCATCGTCGTCCA 59.191 55.000 0.00 0.00 0.00 4.02
39 40 0.248134 CGTCCTCTTCATCGTCGTCC 60.248 60.000 0.00 0.00 0.00 4.79
40 41 0.862283 GCGTCCTCTTCATCGTCGTC 60.862 60.000 0.00 0.00 0.00 4.20
41 42 1.136984 GCGTCCTCTTCATCGTCGT 59.863 57.895 0.00 0.00 0.00 4.34
42 43 1.934956 CGCGTCCTCTTCATCGTCG 60.935 63.158 0.00 0.00 0.00 5.12
43 44 1.586564 CCGCGTCCTCTTCATCGTC 60.587 63.158 4.92 0.00 0.00 4.20
44 45 2.490217 CCGCGTCCTCTTCATCGT 59.510 61.111 4.92 0.00 0.00 3.73
45 46 2.956964 GCCGCGTCCTCTTCATCG 60.957 66.667 4.92 0.00 0.00 3.84
46 47 0.811616 ATTGCCGCGTCCTCTTCATC 60.812 55.000 4.92 0.00 0.00 2.92
47 48 0.392998 AATTGCCGCGTCCTCTTCAT 60.393 50.000 4.92 0.00 0.00 2.57
48 49 1.003839 AATTGCCGCGTCCTCTTCA 60.004 52.632 4.92 0.00 0.00 3.02
49 50 1.019278 TCAATTGCCGCGTCCTCTTC 61.019 55.000 4.92 0.00 0.00 2.87
50 51 0.605319 TTCAATTGCCGCGTCCTCTT 60.605 50.000 4.92 0.00 0.00 2.85
51 52 1.003839 TTCAATTGCCGCGTCCTCT 60.004 52.632 4.92 0.00 0.00 3.69
52 53 1.019278 TCTTCAATTGCCGCGTCCTC 61.019 55.000 4.92 0.00 0.00 3.71
53 54 1.003839 TCTTCAATTGCCGCGTCCT 60.004 52.632 4.92 0.00 0.00 3.85
54 55 1.134694 GTCTTCAATTGCCGCGTCC 59.865 57.895 4.92 0.00 0.00 4.79
55 56 1.225745 CGTCTTCAATTGCCGCGTC 60.226 57.895 4.92 0.00 0.00 5.19
56 57 2.677003 CCGTCTTCAATTGCCGCGT 61.677 57.895 4.92 0.00 0.00 6.01
57 58 2.098298 CCGTCTTCAATTGCCGCG 59.902 61.111 0.00 0.00 0.00 6.46
58 59 2.202479 GCCGTCTTCAATTGCCGC 60.202 61.111 0.00 0.00 0.00 6.53
59 60 2.331893 TGGCCGTCTTCAATTGCCG 61.332 57.895 0.00 0.41 45.12 5.69
60 61 1.212751 GTGGCCGTCTTCAATTGCC 59.787 57.895 0.00 0.00 42.49 4.52
61 62 1.154225 CGTGGCCGTCTTCAATTGC 60.154 57.895 0.00 0.00 0.00 3.56
62 63 0.165944 GTCGTGGCCGTCTTCAATTG 59.834 55.000 0.00 0.00 35.01 2.32
63 64 0.250124 TGTCGTGGCCGTCTTCAATT 60.250 50.000 0.00 0.00 35.01 2.32
64 65 0.250124 TTGTCGTGGCCGTCTTCAAT 60.250 50.000 0.00 0.00 35.01 2.57
65 66 1.144276 TTGTCGTGGCCGTCTTCAA 59.856 52.632 0.00 0.00 35.01 2.69
66 67 1.593209 GTTGTCGTGGCCGTCTTCA 60.593 57.895 0.00 0.00 35.01 3.02
67 68 2.654912 CGTTGTCGTGGCCGTCTTC 61.655 63.158 0.00 0.00 35.01 2.87
68 69 2.660552 CGTTGTCGTGGCCGTCTT 60.661 61.111 0.00 0.00 35.01 3.01
69 70 4.657824 CCGTTGTCGTGGCCGTCT 62.658 66.667 0.00 0.00 35.01 4.18
79 80 3.799755 GTCATGGCCGCCGTTGTC 61.800 66.667 0.00 0.00 0.00 3.18
80 81 3.842925 AAGTCATGGCCGCCGTTGT 62.843 57.895 0.00 0.00 0.00 3.32
81 82 2.141122 AAAAGTCATGGCCGCCGTTG 62.141 55.000 0.00 3.46 0.00 4.10
82 83 1.901464 AAAAGTCATGGCCGCCGTT 60.901 52.632 0.00 0.00 0.00 4.44
83 84 2.282180 AAAAGTCATGGCCGCCGT 60.282 55.556 4.58 0.28 0.00 5.68
84 85 2.179018 CAAAAGTCATGGCCGCCG 59.821 61.111 4.58 0.00 0.00 6.46
85 86 1.080569 CACAAAAGTCATGGCCGCC 60.081 57.895 1.04 1.04 0.00 6.13
86 87 1.080569 CCACAAAAGTCATGGCCGC 60.081 57.895 0.00 0.00 0.00 6.53
87 88 0.240945 GTCCACAAAAGTCATGGCCG 59.759 55.000 0.00 0.00 33.20 6.13
88 89 1.620822 AGTCCACAAAAGTCATGGCC 58.379 50.000 0.00 0.00 33.20 5.36
89 90 3.733443 AAAGTCCACAAAAGTCATGGC 57.267 42.857 0.00 0.00 33.20 4.40
90 91 7.264947 ACTTAAAAAGTCCACAAAAGTCATGG 58.735 34.615 0.00 0.00 37.02 3.66
91 92 8.702163 AACTTAAAAAGTCCACAAAAGTCATG 57.298 30.769 0.00 0.00 41.91 3.07
93 94 9.628746 GTAAACTTAAAAAGTCCACAAAAGTCA 57.371 29.630 0.00 0.00 41.91 3.41
94 95 9.850628 AGTAAACTTAAAAAGTCCACAAAAGTC 57.149 29.630 0.00 0.00 41.91 3.01
95 96 9.634163 CAGTAAACTTAAAAAGTCCACAAAAGT 57.366 29.630 0.00 0.00 41.91 2.66
96 97 9.634163 ACAGTAAACTTAAAAAGTCCACAAAAG 57.366 29.630 0.00 0.00 41.91 2.27
130 131 9.411189 AGGGCATTGCAAAATAATTAAAATGAT 57.589 25.926 11.39 0.00 0.00 2.45
131 132 8.804912 AGGGCATTGCAAAATAATTAAAATGA 57.195 26.923 11.39 0.00 0.00 2.57
132 133 9.857957 AAAGGGCATTGCAAAATAATTAAAATG 57.142 25.926 11.39 0.00 0.00 2.32
135 136 9.688592 CAAAAAGGGCATTGCAAAATAATTAAA 57.311 25.926 11.39 0.00 0.00 1.52
136 137 8.854117 ACAAAAAGGGCATTGCAAAATAATTAA 58.146 25.926 11.39 0.00 0.00 1.40
137 138 8.401490 ACAAAAAGGGCATTGCAAAATAATTA 57.599 26.923 11.39 0.00 0.00 1.40
138 139 7.287512 ACAAAAAGGGCATTGCAAAATAATT 57.712 28.000 11.39 0.00 0.00 1.40
139 140 6.897706 ACAAAAAGGGCATTGCAAAATAAT 57.102 29.167 11.39 0.00 0.00 1.28
140 141 6.705863 AACAAAAAGGGCATTGCAAAATAA 57.294 29.167 11.39 0.00 0.00 1.40
141 142 6.705863 AAACAAAAAGGGCATTGCAAAATA 57.294 29.167 11.39 0.00 0.00 1.40
142 143 5.595257 AAACAAAAAGGGCATTGCAAAAT 57.405 30.435 11.39 0.00 0.00 1.82
143 144 6.515272 TTAAACAAAAAGGGCATTGCAAAA 57.485 29.167 11.39 0.00 0.00 2.44
144 145 6.515272 TTTAAACAAAAAGGGCATTGCAAA 57.485 29.167 11.39 0.00 0.00 3.68
145 146 6.705863 ATTTAAACAAAAAGGGCATTGCAA 57.294 29.167 11.39 0.00 0.00 4.08
146 147 6.705863 AATTTAAACAAAAAGGGCATTGCA 57.294 29.167 11.39 0.00 0.00 4.08
147 148 9.179552 CTTAAATTTAAACAAAAAGGGCATTGC 57.820 29.630 11.62 0.00 0.00 3.56
150 151 9.062524 GGACTTAAATTTAAACAAAAAGGGCAT 57.937 29.630 11.62 0.00 0.00 4.40
151 152 7.499563 GGGACTTAAATTTAAACAAAAAGGGCA 59.500 33.333 11.62 0.00 0.00 5.36
152 153 7.499563 TGGGACTTAAATTTAAACAAAAAGGGC 59.500 33.333 11.62 0.30 0.00 5.19
153 154 8.966069 TGGGACTTAAATTTAAACAAAAAGGG 57.034 30.769 11.62 0.34 0.00 3.95
154 155 8.556194 GCTGGGACTTAAATTTAAACAAAAAGG 58.444 33.333 11.62 0.98 0.00 3.11
155 156 8.556194 GGCTGGGACTTAAATTTAAACAAAAAG 58.444 33.333 11.62 3.05 0.00 2.27
156 157 8.047310 TGGCTGGGACTTAAATTTAAACAAAAA 58.953 29.630 11.62 0.00 0.00 1.94
157 158 7.565680 TGGCTGGGACTTAAATTTAAACAAAA 58.434 30.769 11.62 0.00 0.00 2.44
158 159 7.070074 TCTGGCTGGGACTTAAATTTAAACAAA 59.930 33.333 11.62 0.00 0.00 2.83
159 160 6.551601 TCTGGCTGGGACTTAAATTTAAACAA 59.448 34.615 11.62 0.00 0.00 2.83
160 161 6.015772 GTCTGGCTGGGACTTAAATTTAAACA 60.016 38.462 11.62 7.74 0.00 2.83
161 162 6.015772 TGTCTGGCTGGGACTTAAATTTAAAC 60.016 38.462 11.62 8.62 35.04 2.01
162 163 6.071984 TGTCTGGCTGGGACTTAAATTTAAA 58.928 36.000 11.62 0.00 35.04 1.52
163 164 5.636123 TGTCTGGCTGGGACTTAAATTTAA 58.364 37.500 10.16 10.16 35.04 1.52
164 165 5.249780 TGTCTGGCTGGGACTTAAATTTA 57.750 39.130 0.00 0.00 35.04 1.40
165 166 4.112634 TGTCTGGCTGGGACTTAAATTT 57.887 40.909 0.00 0.00 35.04 1.82
166 167 3.806949 TGTCTGGCTGGGACTTAAATT 57.193 42.857 0.00 0.00 35.04 1.82
167 168 3.806949 TTGTCTGGCTGGGACTTAAAT 57.193 42.857 0.00 0.00 35.04 1.40
168 169 3.586470 TTTGTCTGGCTGGGACTTAAA 57.414 42.857 0.00 0.00 35.04 1.52
169 170 3.330701 AGATTTGTCTGGCTGGGACTTAA 59.669 43.478 0.00 0.00 35.04 1.85
170 171 2.912956 AGATTTGTCTGGCTGGGACTTA 59.087 45.455 0.00 0.00 35.04 2.24
171 172 1.707427 AGATTTGTCTGGCTGGGACTT 59.293 47.619 0.00 0.00 35.04 3.01
172 173 1.366319 AGATTTGTCTGGCTGGGACT 58.634 50.000 0.00 0.00 35.04 3.85
173 174 2.206576 AAGATTTGTCTGGCTGGGAC 57.793 50.000 0.00 0.00 0.00 4.46
174 175 2.978156 AAAGATTTGTCTGGCTGGGA 57.022 45.000 0.00 0.00 0.00 4.37
175 176 5.467035 TTTAAAAGATTTGTCTGGCTGGG 57.533 39.130 0.00 0.00 0.00 4.45
176 177 6.930722 ACATTTTAAAAGATTTGTCTGGCTGG 59.069 34.615 6.79 0.00 0.00 4.85
177 178 7.095523 CCACATTTTAAAAGATTTGTCTGGCTG 60.096 37.037 6.79 0.00 0.00 4.85
178 179 6.930722 CCACATTTTAAAAGATTTGTCTGGCT 59.069 34.615 6.79 0.00 0.00 4.75
179 180 6.347644 GCCACATTTTAAAAGATTTGTCTGGC 60.348 38.462 13.65 13.65 0.00 4.85
180 181 6.128849 CGCCACATTTTAAAAGATTTGTCTGG 60.129 38.462 6.79 5.86 0.00 3.86
181 182 6.128849 CCGCCACATTTTAAAAGATTTGTCTG 60.129 38.462 6.79 0.09 0.00 3.51
182 183 5.925969 CCGCCACATTTTAAAAGATTTGTCT 59.074 36.000 6.79 0.00 0.00 3.41
183 184 5.389411 GCCGCCACATTTTAAAAGATTTGTC 60.389 40.000 6.79 0.00 0.00 3.18
184 185 4.450757 GCCGCCACATTTTAAAAGATTTGT 59.549 37.500 6.79 3.16 0.00 2.83
185 186 4.690280 AGCCGCCACATTTTAAAAGATTTG 59.310 37.500 6.79 2.53 0.00 2.32
186 187 4.690280 CAGCCGCCACATTTTAAAAGATTT 59.310 37.500 6.79 0.00 0.00 2.17
187 188 4.244862 CAGCCGCCACATTTTAAAAGATT 58.755 39.130 6.79 0.00 0.00 2.40
188 189 3.368323 CCAGCCGCCACATTTTAAAAGAT 60.368 43.478 6.79 0.00 0.00 2.40
189 190 2.029470 CCAGCCGCCACATTTTAAAAGA 60.029 45.455 6.79 0.00 0.00 2.52
190 191 2.288763 ACCAGCCGCCACATTTTAAAAG 60.289 45.455 6.79 1.92 0.00 2.27
191 192 1.689273 ACCAGCCGCCACATTTTAAAA 59.311 42.857 2.51 2.51 0.00 1.52
192 193 1.333177 ACCAGCCGCCACATTTTAAA 58.667 45.000 0.00 0.00 0.00 1.52
193 194 1.000283 CAACCAGCCGCCACATTTTAA 60.000 47.619 0.00 0.00 0.00 1.52
194 195 0.600557 CAACCAGCCGCCACATTTTA 59.399 50.000 0.00 0.00 0.00 1.52
195 196 1.367102 CAACCAGCCGCCACATTTT 59.633 52.632 0.00 0.00 0.00 1.82
196 197 2.573083 CCAACCAGCCGCCACATTT 61.573 57.895 0.00 0.00 0.00 2.32
197 198 2.990967 CCAACCAGCCGCCACATT 60.991 61.111 0.00 0.00 0.00 2.71
198 199 3.965258 TCCAACCAGCCGCCACAT 61.965 61.111 0.00 0.00 0.00 3.21
199 200 4.947147 GTCCAACCAGCCGCCACA 62.947 66.667 0.00 0.00 0.00 4.17
204 205 4.988598 AGCACGTCCAACCAGCCG 62.989 66.667 0.00 0.00 0.00 5.52
205 206 3.357079 CAGCACGTCCAACCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
206 207 2.280797 TCAGCACGTCCAACCAGC 60.281 61.111 0.00 0.00 0.00 4.85
207 208 2.310233 CGTCAGCACGTCCAACCAG 61.310 63.158 0.00 0.00 41.42 4.00
208 209 2.279851 CGTCAGCACGTCCAACCA 60.280 61.111 0.00 0.00 41.42 3.67
209 210 3.041940 CCGTCAGCACGTCCAACC 61.042 66.667 0.00 0.00 45.17 3.77
210 211 3.041940 CCCGTCAGCACGTCCAAC 61.042 66.667 0.00 0.00 45.17 3.77
211 212 4.980805 GCCCGTCAGCACGTCCAA 62.981 66.667 0.00 0.00 45.17 3.53
220 221 4.907034 CGATCGTCCGCCCGTCAG 62.907 72.222 7.03 0.00 0.00 3.51
228 229 1.081556 TGTCCATTTGCGATCGTCCG 61.082 55.000 17.81 1.26 0.00 4.79
229 230 0.373716 GTGTCCATTTGCGATCGTCC 59.626 55.000 17.81 0.88 0.00 4.79
230 231 0.025001 CGTGTCCATTTGCGATCGTC 59.975 55.000 17.81 9.69 0.00 4.20
231 232 0.389296 TCGTGTCCATTTGCGATCGT 60.389 50.000 17.81 0.00 0.00 3.73
232 233 0.298707 CTCGTGTCCATTTGCGATCG 59.701 55.000 11.69 11.69 32.79 3.69
233 234 1.061131 CACTCGTGTCCATTTGCGATC 59.939 52.381 0.00 0.00 32.79 3.69
234 235 1.078709 CACTCGTGTCCATTTGCGAT 58.921 50.000 0.00 0.00 32.79 4.58
235 236 0.249699 ACACTCGTGTCCATTTGCGA 60.250 50.000 0.00 0.00 40.24 5.10
236 237 2.234613 ACACTCGTGTCCATTTGCG 58.765 52.632 0.00 0.00 40.24 4.85
246 247 0.950836 TGGCAAAATGGACACTCGTG 59.049 50.000 0.00 0.00 0.00 4.35
247 248 1.336755 GTTGGCAAAATGGACACTCGT 59.663 47.619 0.00 0.00 0.00 4.18
248 249 1.336440 TGTTGGCAAAATGGACACTCG 59.664 47.619 0.00 0.00 0.00 4.18
249 250 2.100584 TGTGTTGGCAAAATGGACACTC 59.899 45.455 16.26 0.00 40.79 3.51
250 251 2.106566 TGTGTTGGCAAAATGGACACT 58.893 42.857 16.26 0.00 40.79 3.55
251 252 2.593346 TGTGTTGGCAAAATGGACAC 57.407 45.000 0.00 6.19 40.62 3.67
252 253 3.265791 GTTTGTGTTGGCAAAATGGACA 58.734 40.909 0.00 0.00 39.65 4.02
253 254 2.611751 GGTTTGTGTTGGCAAAATGGAC 59.388 45.455 0.00 0.00 39.65 4.02
254 255 2.237143 TGGTTTGTGTTGGCAAAATGGA 59.763 40.909 0.00 0.00 39.65 3.41
255 256 2.636830 TGGTTTGTGTTGGCAAAATGG 58.363 42.857 0.00 0.00 39.65 3.16
256 257 3.438087 TGTTGGTTTGTGTTGGCAAAATG 59.562 39.130 0.00 0.00 39.65 2.32
257 258 3.679389 TGTTGGTTTGTGTTGGCAAAAT 58.321 36.364 0.00 0.00 39.65 1.82
258 259 3.126001 TGTTGGTTTGTGTTGGCAAAA 57.874 38.095 0.00 0.00 39.65 2.44
259 260 2.839486 TGTTGGTTTGTGTTGGCAAA 57.161 40.000 0.00 0.00 36.17 3.68
260 261 2.839486 TTGTTGGTTTGTGTTGGCAA 57.161 40.000 0.00 0.00 0.00 4.52
261 262 2.808543 GTTTTGTTGGTTTGTGTTGGCA 59.191 40.909 0.00 0.00 0.00 4.92
262 263 2.159774 CGTTTTGTTGGTTTGTGTTGGC 60.160 45.455 0.00 0.00 0.00 4.52
263 264 2.413453 CCGTTTTGTTGGTTTGTGTTGG 59.587 45.455 0.00 0.00 0.00 3.77
264 265 3.122111 GTCCGTTTTGTTGGTTTGTGTTG 59.878 43.478 0.00 0.00 0.00 3.33
265 266 3.318886 GTCCGTTTTGTTGGTTTGTGTT 58.681 40.909 0.00 0.00 0.00 3.32
266 267 2.668834 CGTCCGTTTTGTTGGTTTGTGT 60.669 45.455 0.00 0.00 0.00 3.72
267 268 1.914700 CGTCCGTTTTGTTGGTTTGTG 59.085 47.619 0.00 0.00 0.00 3.33
268 269 1.540707 ACGTCCGTTTTGTTGGTTTGT 59.459 42.857 0.00 0.00 0.00 2.83
269 270 2.178783 GACGTCCGTTTTGTTGGTTTG 58.821 47.619 3.51 0.00 0.00 2.93
270 271 1.132834 GGACGTCCGTTTTGTTGGTTT 59.867 47.619 20.85 0.00 0.00 3.27
271 272 0.734309 GGACGTCCGTTTTGTTGGTT 59.266 50.000 20.85 0.00 0.00 3.67
272 273 2.396700 GGACGTCCGTTTTGTTGGT 58.603 52.632 20.85 0.00 0.00 3.67
290 291 4.258932 AAAACGTGGCCGCCAACG 62.259 61.111 23.96 23.96 34.18 4.10
291 292 2.656973 CAAAACGTGGCCGCCAAC 60.657 61.111 15.39 7.78 34.18 3.77
292 293 3.905678 CCAAAACGTGGCCGCCAA 61.906 61.111 15.39 0.00 41.72 4.52
300 301 1.600023 TTAGGCCACTCCAAAACGTG 58.400 50.000 5.01 0.00 37.29 4.49
301 302 2.351706 TTTAGGCCACTCCAAAACGT 57.648 45.000 5.01 0.00 37.29 3.99
302 303 3.574614 CAATTTAGGCCACTCCAAAACG 58.425 45.455 5.01 0.00 37.29 3.60
303 304 3.306710 CCCAATTTAGGCCACTCCAAAAC 60.307 47.826 5.01 0.00 37.29 2.43
304 305 2.903135 CCCAATTTAGGCCACTCCAAAA 59.097 45.455 5.01 0.00 37.29 2.44
305 306 2.534990 CCCAATTTAGGCCACTCCAAA 58.465 47.619 5.01 0.00 37.29 3.28
306 307 1.272985 CCCCAATTTAGGCCACTCCAA 60.273 52.381 5.01 0.00 37.29 3.53
307 308 0.334676 CCCCAATTTAGGCCACTCCA 59.665 55.000 5.01 0.00 37.29 3.86
308 309 1.043116 GCCCCAATTTAGGCCACTCC 61.043 60.000 5.01 0.00 43.76 3.85
309 310 2.504920 GCCCCAATTTAGGCCACTC 58.495 57.895 5.01 0.00 43.76 3.51
310 311 4.785575 GCCCCAATTTAGGCCACT 57.214 55.556 5.01 0.00 43.76 4.00
315 316 2.158971 CCGAAAATGGCCCCAATTTAGG 60.159 50.000 11.08 11.08 36.06 2.69
316 317 2.499693 ACCGAAAATGGCCCCAATTTAG 59.500 45.455 0.00 1.46 30.20 1.85
317 318 2.541466 ACCGAAAATGGCCCCAATTTA 58.459 42.857 0.00 0.00 30.20 1.40
318 319 1.357137 ACCGAAAATGGCCCCAATTT 58.643 45.000 0.00 0.13 32.42 1.82
319 320 1.003003 CAACCGAAAATGGCCCCAATT 59.997 47.619 0.00 0.00 0.00 2.32
320 321 0.612744 CAACCGAAAATGGCCCCAAT 59.387 50.000 0.00 0.00 0.00 3.16
321 322 0.470080 TCAACCGAAAATGGCCCCAA 60.470 50.000 0.00 0.00 0.00 4.12
322 323 0.470080 TTCAACCGAAAATGGCCCCA 60.470 50.000 0.00 0.00 0.00 4.96
323 324 0.901827 ATTCAACCGAAAATGGCCCC 59.098 50.000 0.00 0.00 34.01 5.80
324 325 1.405391 CCATTCAACCGAAAATGGCCC 60.405 52.381 0.00 0.00 43.88 5.80
325 326 2.008752 CCATTCAACCGAAAATGGCC 57.991 50.000 0.00 0.00 43.88 5.36
328 329 3.244976 GAGCACCATTCAACCGAAAATG 58.755 45.455 0.00 0.00 34.01 2.32
329 330 2.890311 TGAGCACCATTCAACCGAAAAT 59.110 40.909 0.00 0.00 34.01 1.82
330 331 2.034053 GTGAGCACCATTCAACCGAAAA 59.966 45.455 0.00 0.00 34.01 2.29
331 332 1.606668 GTGAGCACCATTCAACCGAAA 59.393 47.619 0.00 0.00 34.01 3.46
332 333 1.234821 GTGAGCACCATTCAACCGAA 58.765 50.000 0.00 0.00 35.05 4.30
333 334 0.107643 TGTGAGCACCATTCAACCGA 59.892 50.000 0.00 0.00 0.00 4.69
334 335 1.167851 ATGTGAGCACCATTCAACCG 58.832 50.000 0.00 0.00 0.00 4.44
335 336 3.665745 AAATGTGAGCACCATTCAACC 57.334 42.857 0.00 0.00 0.00 3.77
336 337 3.670055 CGAAAATGTGAGCACCATTCAAC 59.330 43.478 0.00 0.00 0.00 3.18
337 338 3.305267 CCGAAAATGTGAGCACCATTCAA 60.305 43.478 0.00 0.00 0.00 2.69
338 339 2.228582 CCGAAAATGTGAGCACCATTCA 59.771 45.455 0.00 0.00 0.00 2.57
339 340 2.228822 ACCGAAAATGTGAGCACCATTC 59.771 45.455 0.00 0.25 0.00 2.67
340 341 2.238521 ACCGAAAATGTGAGCACCATT 58.761 42.857 0.00 0.00 0.00 3.16
341 342 1.909700 ACCGAAAATGTGAGCACCAT 58.090 45.000 0.00 0.00 0.00 3.55
342 343 1.336440 CAACCGAAAATGTGAGCACCA 59.664 47.619 0.00 0.00 0.00 4.17
343 344 1.606668 TCAACCGAAAATGTGAGCACC 59.393 47.619 0.00 0.00 0.00 5.01
344 345 3.559238 ATCAACCGAAAATGTGAGCAC 57.441 42.857 0.00 0.00 0.00 4.40
345 346 4.582701 AAATCAACCGAAAATGTGAGCA 57.417 36.364 0.00 0.00 0.00 4.26
346 347 4.744631 ACAAAATCAACCGAAAATGTGAGC 59.255 37.500 0.00 0.00 0.00 4.26
347 348 6.344936 CGAACAAAATCAACCGAAAATGTGAG 60.345 38.462 0.00 0.00 0.00 3.51
348 349 5.457148 CGAACAAAATCAACCGAAAATGTGA 59.543 36.000 0.00 0.00 0.00 3.58
349 350 5.332205 CCGAACAAAATCAACCGAAAATGTG 60.332 40.000 0.00 0.00 0.00 3.21
350 351 4.742659 CCGAACAAAATCAACCGAAAATGT 59.257 37.500 0.00 0.00 0.00 2.71
351 352 4.742659 ACCGAACAAAATCAACCGAAAATG 59.257 37.500 0.00 0.00 0.00 2.32
352 353 4.742659 CACCGAACAAAATCAACCGAAAAT 59.257 37.500 0.00 0.00 0.00 1.82
353 354 4.106197 CACCGAACAAAATCAACCGAAAA 58.894 39.130 0.00 0.00 0.00 2.29
354 355 3.489398 CCACCGAACAAAATCAACCGAAA 60.489 43.478 0.00 0.00 0.00 3.46
355 356 2.033550 CCACCGAACAAAATCAACCGAA 59.966 45.455 0.00 0.00 0.00 4.30
356 357 1.604755 CCACCGAACAAAATCAACCGA 59.395 47.619 0.00 0.00 0.00 4.69
357 358 1.335506 CCCACCGAACAAAATCAACCG 60.336 52.381 0.00 0.00 0.00 4.44
358 359 1.957877 TCCCACCGAACAAAATCAACC 59.042 47.619 0.00 0.00 0.00 3.77
359 360 2.030274 CCTCCCACCGAACAAAATCAAC 60.030 50.000 0.00 0.00 0.00 3.18
360 361 2.158593 TCCTCCCACCGAACAAAATCAA 60.159 45.455 0.00 0.00 0.00 2.57
361 362 1.422024 TCCTCCCACCGAACAAAATCA 59.578 47.619 0.00 0.00 0.00 2.57
362 363 2.084546 CTCCTCCCACCGAACAAAATC 58.915 52.381 0.00 0.00 0.00 2.17
363 364 1.702957 TCTCCTCCCACCGAACAAAAT 59.297 47.619 0.00 0.00 0.00 1.82
364 365 1.133363 TCTCCTCCCACCGAACAAAA 58.867 50.000 0.00 0.00 0.00 2.44
365 366 1.003118 CATCTCCTCCCACCGAACAAA 59.997 52.381 0.00 0.00 0.00 2.83
366 367 0.613260 CATCTCCTCCCACCGAACAA 59.387 55.000 0.00 0.00 0.00 2.83
372 373 0.253327 GGTGAACATCTCCTCCCACC 59.747 60.000 0.00 0.00 37.50 4.61
380 381 4.082679 ACTCGTAGTTGAGGTGAACATCTC 60.083 45.833 7.99 7.99 40.39 2.75
382 383 4.175787 ACTCGTAGTTGAGGTGAACATC 57.824 45.455 0.00 0.00 40.39 3.06
403 404 1.045407 ACGAAGTACACCAGAGGCAA 58.955 50.000 0.00 0.00 41.94 4.52
404 405 2.741433 ACGAAGTACACCAGAGGCA 58.259 52.632 0.00 0.00 41.94 4.75
430 431 1.349026 ACTGAGCCGGCATAGCATATT 59.651 47.619 31.54 3.33 0.00 1.28
432 433 0.318441 GACTGAGCCGGCATAGCATA 59.682 55.000 31.54 5.14 0.00 3.14
436 437 0.749649 AAGAGACTGAGCCGGCATAG 59.250 55.000 31.54 26.79 0.00 2.23
441 442 1.515020 CTCCAAGAGACTGAGCCGG 59.485 63.158 0.00 0.00 0.00 6.13
443 444 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.000 0.00 0.00 0.00 4.70
449 450 5.344743 TCATATGAACACCTCCAAGAGAC 57.655 43.478 1.98 0.00 0.00 3.36
455 456 7.437713 AACTCTATTCATATGAACACCTCCA 57.562 36.000 20.19 0.00 36.80 3.86
456 457 7.770897 ACAAACTCTATTCATATGAACACCTCC 59.229 37.037 20.19 0.00 36.80 4.30
457 458 8.607459 CACAAACTCTATTCATATGAACACCTC 58.393 37.037 20.19 0.00 36.80 3.85
463 464 8.720562 CACACACACAAACTCTATTCATATGAA 58.279 33.333 20.07 20.07 38.56 2.57
466 467 8.621532 AACACACACACAAACTCTATTCATAT 57.378 30.769 0.00 0.00 0.00 1.78
471 472 5.650266 TGGAAACACACACACAAACTCTATT 59.350 36.000 0.00 0.00 33.40 1.73
490 491 7.092444 ACAAGTATCCACTCATCCTTATGGAAA 60.092 37.037 0.77 0.00 44.25 3.13
493 494 5.994054 CACAAGTATCCACTCATCCTTATGG 59.006 44.000 0.00 0.00 32.29 2.74
498 499 4.098044 CGTACACAAGTATCCACTCATCCT 59.902 45.833 0.00 0.00 32.29 3.24
507 508 2.159476 TCGCTCACGTACACAAGTATCC 60.159 50.000 0.00 0.00 41.18 2.59
508 509 2.844804 GTCGCTCACGTACACAAGTATC 59.155 50.000 0.00 0.00 41.18 2.24
514 515 0.664224 TGAAGTCGCTCACGTACACA 59.336 50.000 0.00 0.00 41.18 3.72
515 516 1.762419 TTGAAGTCGCTCACGTACAC 58.238 50.000 0.00 0.00 41.18 2.90
520 521 4.798907 ACAGTATAATTGAAGTCGCTCACG 59.201 41.667 0.00 0.00 42.01 4.35
521 522 5.577164 ACACAGTATAATTGAAGTCGCTCAC 59.423 40.000 0.00 0.00 0.00 3.51
645 669 2.024918 CAACGCTGCTGTTGGACTT 58.975 52.632 21.32 0.00 44.27 3.01
673 697 4.134623 CATGGCAATGGCAATGGC 57.865 55.556 21.05 21.05 45.97 4.40
927 975 0.688087 GAGGAGGGATCGAAGGTGGT 60.688 60.000 0.00 0.00 0.00 4.16
928 976 1.403687 GGAGGAGGGATCGAAGGTGG 61.404 65.000 0.00 0.00 0.00 4.61
938 987 2.015726 GGAGGAGGAGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
951 1000 0.415429 AAGAAGCAGGAGGAGGAGGA 59.585 55.000 0.00 0.00 0.00 3.71
955 1004 1.756538 GAGAGAAGAAGCAGGAGGAGG 59.243 57.143 0.00 0.00 0.00 4.30
956 1005 1.405105 CGAGAGAAGAAGCAGGAGGAG 59.595 57.143 0.00 0.00 0.00 3.69
957 1006 1.468985 CGAGAGAAGAAGCAGGAGGA 58.531 55.000 0.00 0.00 0.00 3.71
959 1008 0.525242 CGCGAGAGAAGAAGCAGGAG 60.525 60.000 0.00 0.00 0.00 3.69
960 1009 1.244697 ACGCGAGAGAAGAAGCAGGA 61.245 55.000 15.93 0.00 0.00 3.86
963 1012 0.879090 TGTACGCGAGAGAAGAAGCA 59.121 50.000 15.93 0.00 0.00 3.91
967 1016 1.792301 CCGTGTACGCGAGAGAAGA 59.208 57.895 29.24 0.00 38.18 2.87
970 1019 2.745100 AGCCGTGTACGCGAGAGA 60.745 61.111 29.24 0.00 38.18 3.10
972 1021 4.771356 GCAGCCGTGTACGCGAGA 62.771 66.667 29.24 0.00 38.18 4.04
990 1039 3.545481 CTCGCCATCGTCACACGC 61.545 66.667 0.00 0.00 42.21 5.34
991 1040 2.880879 CCTCGCCATCGTCACACG 60.881 66.667 0.00 0.00 44.19 4.49
995 1044 3.060000 ACGTCCTCGCCATCGTCA 61.060 61.111 0.00 0.00 41.18 4.35
1490 1757 6.197282 GGAAGTGAAGAAAGAAAAGAAAAGCG 59.803 38.462 0.00 0.00 0.00 4.68
1639 1907 3.119352 CCCATGAAAAGCAGTAAAGCTCC 60.119 47.826 0.00 0.00 45.89 4.70
1680 1952 2.042979 AGCAAACATGGTTAGGGTCCAT 59.957 45.455 0.00 0.00 45.29 3.41
1682 1954 1.818674 CAGCAAACATGGTTAGGGTCC 59.181 52.381 0.00 0.00 0.00 4.46
1683 1955 1.202348 GCAGCAAACATGGTTAGGGTC 59.798 52.381 0.00 0.00 0.00 4.46
1684 1956 1.256812 GCAGCAAACATGGTTAGGGT 58.743 50.000 0.00 0.00 0.00 4.34
1685 1957 1.203052 CTGCAGCAAACATGGTTAGGG 59.797 52.381 0.00 0.00 0.00 3.53
1687 1959 1.403249 GCCTGCAGCAAACATGGTTAG 60.403 52.381 8.66 0.00 42.97 2.34
1689 1961 1.368579 GCCTGCAGCAAACATGGTT 59.631 52.632 8.66 0.00 42.97 3.67
1690 1962 3.053828 GCCTGCAGCAAACATGGT 58.946 55.556 8.66 0.00 42.97 3.55
2137 2570 9.208022 CATGAAATCATGTACGTATGAAGGTAT 57.792 33.333 13.95 0.00 46.40 2.73
2178 2628 4.430765 AGCCCGTGCGTCCGTAAG 62.431 66.667 0.00 0.00 44.33 2.34
2207 2663 1.380524 GGTGCTGCTAGTCGACTAGA 58.619 55.000 42.72 29.46 46.80 2.43
2240 2696 1.148310 CAGTCACGGCGAGTTTGAAT 58.852 50.000 16.62 2.50 0.00 2.57
2284 2740 1.660333 CCAAAAACGAGAACGCTCTGC 60.660 52.381 0.00 0.00 43.96 4.26
2285 2741 1.864711 TCCAAAAACGAGAACGCTCTG 59.135 47.619 0.00 0.00 43.96 3.35
2286 2742 1.865340 GTCCAAAAACGAGAACGCTCT 59.135 47.619 0.00 0.00 43.96 4.09
2287 2743 1.396815 CGTCCAAAAACGAGAACGCTC 60.397 52.381 0.00 0.00 45.37 5.03
2288 2744 0.580104 CGTCCAAAAACGAGAACGCT 59.420 50.000 0.00 0.00 45.37 5.07
2289 2745 0.990295 GCGTCCAAAAACGAGAACGC 60.990 55.000 1.78 1.78 45.37 4.84
2290 2746 0.716926 CGCGTCCAAAAACGAGAACG 60.717 55.000 0.00 0.00 45.37 3.95
2291 2747 0.990295 GCGCGTCCAAAAACGAGAAC 60.990 55.000 8.43 0.00 45.37 3.01
2292 2748 1.277440 GCGCGTCCAAAAACGAGAA 59.723 52.632 8.43 0.00 45.37 2.87
2293 2749 2.600475 GGCGCGTCCAAAAACGAGA 61.600 57.895 8.43 0.00 45.37 4.04
2294 2750 2.127383 GGCGCGTCCAAAAACGAG 60.127 61.111 8.43 0.00 45.37 4.18
2295 2751 3.652000 GGGCGCGTCCAAAAACGA 61.652 61.111 27.96 0.00 45.37 3.85
2314 3117 2.203832 TGCCAGGACAGAGCAGGA 60.204 61.111 0.00 0.00 31.65 3.86
2317 3120 2.745698 CACTGCCAGGACAGAGCA 59.254 61.111 15.48 0.00 40.25 4.26
2331 3134 3.625897 TACTGCCACTGCCGCACT 61.626 61.111 0.00 0.00 36.33 4.40
2332 3135 2.501223 TAGTACTGCCACTGCCGCAC 62.501 60.000 5.39 0.00 36.33 5.34
2333 3136 2.225791 CTAGTACTGCCACTGCCGCA 62.226 60.000 5.39 0.00 36.33 5.69
2334 3137 1.519455 CTAGTACTGCCACTGCCGC 60.519 63.158 5.39 0.00 36.33 6.53
2335 3138 1.519455 GCTAGTACTGCCACTGCCG 60.519 63.158 5.39 0.00 36.33 5.69
2336 3139 0.460987 CTGCTAGTACTGCCACTGCC 60.461 60.000 5.39 0.00 36.33 4.85
2337 3140 0.247736 ACTGCTAGTACTGCCACTGC 59.752 55.000 5.39 1.22 38.26 4.40
2338 3141 2.001812 CACTGCTAGTACTGCCACTG 57.998 55.000 5.39 0.00 0.00 3.66
2339 3142 0.247736 GCACTGCTAGTACTGCCACT 59.752 55.000 5.39 0.00 0.00 4.00
2340 3143 0.037326 TGCACTGCTAGTACTGCCAC 60.037 55.000 5.39 0.00 0.00 5.01
2350 3153 4.393155 CCCCGTGCTGCACTGCTA 62.393 66.667 28.04 0.00 31.34 3.49
2358 3161 4.124351 CATGCTTGCCCCGTGCTG 62.124 66.667 0.00 0.00 42.00 4.41
2367 3170 2.216750 AATCACGGCACCATGCTTGC 62.217 55.000 8.63 8.63 44.28 4.01
2377 3180 6.367695 CGAATAATCCTACATTAATCACGGCA 59.632 38.462 0.00 0.00 0.00 5.69
2379 3182 6.183360 GCCGAATAATCCTACATTAATCACGG 60.183 42.308 0.00 0.00 36.86 4.94
2383 3186 6.963049 ACGCCGAATAATCCTACATTAATC 57.037 37.500 0.00 0.00 0.00 1.75
2384 3187 7.739498 AAACGCCGAATAATCCTACATTAAT 57.261 32.000 0.00 0.00 0.00 1.40
2385 3188 8.659925 TTAAACGCCGAATAATCCTACATTAA 57.340 30.769 0.00 0.00 0.00 1.40
2386 3189 8.659925 TTTAAACGCCGAATAATCCTACATTA 57.340 30.769 0.00 0.00 0.00 1.90
2411 3221 1.730487 CTCGATAGTGCACGAGCCT 59.270 57.895 12.01 1.77 46.54 4.58
2423 3233 2.995939 CTGCAAAACTCACTGCTCGATA 59.004 45.455 0.00 0.00 39.38 2.92
2500 3320 1.141053 GAAATCCCTACGGACAGGCAT 59.859 52.381 0.00 0.00 42.48 4.40
2501 3321 0.539986 GAAATCCCTACGGACAGGCA 59.460 55.000 0.00 0.00 42.48 4.75
2502 3322 0.179054 GGAAATCCCTACGGACAGGC 60.179 60.000 0.00 0.00 42.48 4.85
2503 3323 1.139058 CAGGAAATCCCTACGGACAGG 59.861 57.143 0.00 0.00 45.60 4.00
2504 3324 1.473434 GCAGGAAATCCCTACGGACAG 60.473 57.143 0.00 0.00 45.60 3.51
2505 3325 0.539986 GCAGGAAATCCCTACGGACA 59.460 55.000 0.00 0.00 45.60 4.02
2506 3326 0.179054 GGCAGGAAATCCCTACGGAC 60.179 60.000 0.00 0.00 45.60 4.79
2507 3327 1.682451 CGGCAGGAAATCCCTACGGA 61.682 60.000 0.00 0.00 45.60 4.69
2570 3432 2.357517 CTGGACAGTGGACACGCC 60.358 66.667 0.00 1.57 36.20 5.68
2580 3442 0.605589 GACAGGACTGGACTGGACAG 59.394 60.000 4.14 0.00 40.23 3.51
2581 3443 0.832135 GGACAGGACTGGACTGGACA 60.832 60.000 4.14 0.00 40.23 4.02
2583 3445 0.542938 CAGGACAGGACTGGACTGGA 60.543 60.000 14.05 0.00 40.23 3.86
2693 3560 0.248949 GGGATGTCGTTACTCGCTCC 60.249 60.000 0.00 0.00 39.67 4.70
2740 3608 3.470888 TTAGGAGGAGCAGCGCCC 61.471 66.667 12.26 5.10 0.00 6.13
2838 3886 1.947642 GCGTATGTCCCGGCGTTAG 60.948 63.158 6.01 0.00 0.00 2.34
2928 3988 2.976903 GCTCCGCATCCAGCATCC 60.977 66.667 0.00 0.00 46.13 3.51
2929 3989 1.783031 CTTGCTCCGCATCCAGCATC 61.783 60.000 0.00 0.00 45.03 3.91
2932 3992 1.308069 TTTCTTGCTCCGCATCCAGC 61.308 55.000 0.00 0.00 38.76 4.85
2933 3993 0.449388 GTTTCTTGCTCCGCATCCAG 59.551 55.000 0.00 0.00 38.76 3.86
2937 3997 1.327303 TTTGGTTTCTTGCTCCGCAT 58.673 45.000 0.00 0.00 38.76 4.73
2938 3998 1.107114 TTTTGGTTTCTTGCTCCGCA 58.893 45.000 0.00 0.00 36.47 5.69
2940 4000 1.332375 TCGTTTTGGTTTCTTGCTCCG 59.668 47.619 0.00 0.00 0.00 4.63
2941 4001 3.004315 TCATCGTTTTGGTTTCTTGCTCC 59.996 43.478 0.00 0.00 0.00 4.70
2943 4003 4.359706 GTTCATCGTTTTGGTTTCTTGCT 58.640 39.130 0.00 0.00 0.00 3.91
3017 4129 0.106369 CCCTGCATCCACATCCACAT 60.106 55.000 0.00 0.00 0.00 3.21
3254 4372 0.251608 TGATCGACCAGTGGGAGTGA 60.252 55.000 15.21 5.75 38.05 3.41
3281 4399 1.036707 TCCATGGACGACGATGCATA 58.963 50.000 11.44 0.00 32.26 3.14
3357 4479 5.817296 ACGTTTCCTTATAATTAACCCGACC 59.183 40.000 0.00 0.00 0.00 4.79
3372 4494 1.064240 AGTCCCCACAAACGTTTCCTT 60.064 47.619 11.37 0.00 0.00 3.36
3384 4509 2.272471 GCCTTAGCCAGTCCCCAC 59.728 66.667 0.00 0.00 0.00 4.61
3424 4564 0.884259 CCTTCATCACCACACACGCA 60.884 55.000 0.00 0.00 0.00 5.24
3443 4583 1.095600 GCCGTCATTCTTTCCCCTTC 58.904 55.000 0.00 0.00 0.00 3.46
3487 4627 5.940192 TTATTACAGGTTCACAGCAACAG 57.060 39.130 0.00 0.00 0.00 3.16
3531 4701 3.922375 ACCACTTCTTTTTCCCATGGAA 58.078 40.909 15.22 2.63 40.27 3.53
3532 4702 3.611025 ACCACTTCTTTTTCCCATGGA 57.389 42.857 15.22 0.00 0.00 3.41
3533 4703 4.148838 TGTACCACTTCTTTTTCCCATGG 58.851 43.478 4.14 4.14 0.00 3.66
3534 4704 4.827284 ACTGTACCACTTCTTTTTCCCATG 59.173 41.667 0.00 0.00 0.00 3.66
3535 4705 5.061721 ACTGTACCACTTCTTTTTCCCAT 57.938 39.130 0.00 0.00 0.00 4.00
3540 4710 6.177610 TCACTCAACTGTACCACTTCTTTTT 58.822 36.000 0.00 0.00 0.00 1.94
3545 4715 5.501897 CGTTTTCACTCAACTGTACCACTTC 60.502 44.000 0.00 0.00 0.00 3.01
3561 4731 7.653523 TCGTGTTTATTTCTTTCGTTTTCAC 57.346 32.000 0.00 0.00 0.00 3.18
3580 4754 8.202461 TCCTTCCTTCCATTATTATATCGTGT 57.798 34.615 0.00 0.00 0.00 4.49
3581 4755 8.936864 GTTCCTTCCTTCCATTATTATATCGTG 58.063 37.037 0.00 0.00 0.00 4.35
3583 4757 9.726438 AAGTTCCTTCCTTCCATTATTATATCG 57.274 33.333 0.00 0.00 0.00 2.92
3624 4799 1.383523 CGAAAAGATCCAAGCCCCTC 58.616 55.000 0.00 0.00 0.00 4.30
3630 4805 0.453390 GCCAGGCGAAAAGATCCAAG 59.547 55.000 0.00 0.00 0.00 3.61
3755 4930 1.900486 ACCACAGTGGCTAGTTCTACC 59.100 52.381 20.48 0.00 42.67 3.18
3852 5030 2.159099 TCGAGCTGTTGTTCTTCACTGT 60.159 45.455 0.00 0.00 0.00 3.55
3913 5100 3.648339 TTTCACCGTGACTACTACCAC 57.352 47.619 0.00 0.00 0.00 4.16
3915 5102 4.081807 AGGATTTTCACCGTGACTACTACC 60.082 45.833 0.00 1.26 0.00 3.18
3935 5424 7.202075 CCATCTCTCTTAGATCATCCAAAAGGA 60.202 40.741 0.00 0.00 43.42 3.36
3960 5450 5.006165 CGAATCTAGCAAGTTTCATCTGTCC 59.994 44.000 0.00 0.00 32.97 4.02
3999 5495 0.890996 CCGAATGGGCTGCTTATCCC 60.891 60.000 0.00 0.00 42.93 3.85
4023 5522 3.190849 CGGCCACATCAGCAGTCG 61.191 66.667 2.24 0.00 0.00 4.18
4029 5528 3.958147 AAGCGACCGGCCACATCAG 62.958 63.158 0.00 0.00 45.17 2.90
4070 5570 3.612423 TGTATTCAAGCTGATTCGACGTG 59.388 43.478 0.00 0.00 0.00 4.49
4081 5581 4.870021 ATTCCTCCCTTGTATTCAAGCT 57.130 40.909 6.56 0.00 46.74 3.74
4161 5661 2.262915 GTCCACGGACTCCAGCTG 59.737 66.667 6.78 6.78 41.57 4.24
4183 5683 0.326264 AGTAGCTGTCTTTGGGCCTG 59.674 55.000 4.53 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.