Multiple sequence alignment - TraesCS7D01G111600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G111600 chr7D 100.000 3026 0 0 1 3026 68418532 68415507 0.000000e+00 5589.0
1 TraesCS7D01G111600 chr7D 88.991 109 11 1 2868 2975 88596176 88596284 1.890000e-27 134.0
2 TraesCS7D01G111600 chr7A 90.492 2745 106 58 2 2669 71668878 71671544 0.000000e+00 3480.0
3 TraesCS7D01G111600 chr7B 94.004 1401 53 15 1556 2939 9703261 9704647 0.000000e+00 2093.0
4 TraesCS7D01G111600 chr7B 90.195 1540 80 36 2 1529 9701505 9702985 0.000000e+00 1941.0
5 TraesCS7D01G111600 chr7B 100.000 34 0 0 2988 3021 383105765 383105732 2.520000e-06 63.9
6 TraesCS7D01G111600 chr7B 100.000 30 0 0 2992 3021 226150512 226150483 4.210000e-04 56.5
7 TraesCS7D01G111600 chr3D 84.793 217 33 0 1802 2018 107678837 107678621 5.080000e-53 219.0
8 TraesCS7D01G111600 chr3B 84.793 217 33 0 1802 2018 158716006 158715790 5.080000e-53 219.0
9 TraesCS7D01G111600 chr3B 100.000 33 0 0 2989 3021 807081896 807081928 9.060000e-06 62.1
10 TraesCS7D01G111600 chr3B 100.000 28 0 0 2984 3011 817350531 817350558 5.000000e-03 52.8
11 TraesCS7D01G111600 chr2D 89.908 109 10 1 2868 2975 39587027 39587135 4.070000e-29 139.0
12 TraesCS7D01G111600 chr2D 100.000 31 0 0 2989 3019 553547596 553547566 1.170000e-04 58.4
13 TraesCS7D01G111600 chr2A 89.908 109 10 1 2868 2975 735227640 735227532 4.070000e-29 139.0
14 TraesCS7D01G111600 chrUn 88.991 109 11 1 2868 2975 45096619 45096727 1.890000e-27 134.0
15 TraesCS7D01G111600 chrUn 88.991 109 11 1 2868 2975 416116465 416116357 1.890000e-27 134.0
16 TraesCS7D01G111600 chrUn 94.872 39 2 0 2983 3021 16761853 16761891 9.060000e-06 62.1
17 TraesCS7D01G111600 chr6D 88.991 109 11 1 2868 2975 159818703 159818811 1.890000e-27 134.0
18 TraesCS7D01G111600 chr6A 88.991 109 11 1 2868 2975 155842466 155842574 1.890000e-27 134.0
19 TraesCS7D01G111600 chr1D 88.991 109 11 1 2868 2975 493800279 493800387 1.890000e-27 134.0
20 TraesCS7D01G111600 chr6B 100.000 34 0 0 2988 3021 2471604 2471637 2.520000e-06 63.9
21 TraesCS7D01G111600 chr4A 100.000 33 0 0 2989 3021 733908654 733908686 9.060000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G111600 chr7D 68415507 68418532 3025 True 5589 5589 100.0000 1 3026 1 chr7D.!!$R1 3025
1 TraesCS7D01G111600 chr7A 71668878 71671544 2666 False 3480 3480 90.4920 2 2669 1 chr7A.!!$F1 2667
2 TraesCS7D01G111600 chr7B 9701505 9704647 3142 False 2017 2093 92.0995 2 2939 2 chr7B.!!$F1 2937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 376 0.238289 CCATGCACGTGAAACAGGTC 59.762 55.0 22.23 0.0 35.74 3.85 F
664 685 0.318529 CATCCATCGGTCTCTCGCTG 60.319 60.0 0.00 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1283 0.108615 GGCGAGCACTTTCAGAGCTA 60.109 55.0 0.00 0.0 42.16 3.32 R
2584 2936 0.249398 AAGCCACCGGTCTCATACAC 59.751 55.0 2.59 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.159179 AGAACCAGGGCAACAAAAGT 57.841 45.000 0.00 0.00 39.74 2.66
79 81 4.663636 ACAAAGAGTTTATTTCGAGCCG 57.336 40.909 0.00 0.00 0.00 5.52
101 103 1.541233 GGGACAGGTGGAGCATTATCG 60.541 57.143 0.00 0.00 0.00 2.92
115 117 1.471119 TTATCGTCGTCCTTGAGCCT 58.529 50.000 0.00 0.00 0.00 4.58
241 243 3.326588 TCTTCTTCATCCTTTCCGACCAA 59.673 43.478 0.00 0.00 0.00 3.67
242 244 3.053831 TCTTCATCCTTTCCGACCAAC 57.946 47.619 0.00 0.00 0.00 3.77
243 245 2.370519 TCTTCATCCTTTCCGACCAACA 59.629 45.455 0.00 0.00 0.00 3.33
244 246 2.178912 TCATCCTTTCCGACCAACAC 57.821 50.000 0.00 0.00 0.00 3.32
245 247 1.418264 TCATCCTTTCCGACCAACACA 59.582 47.619 0.00 0.00 0.00 3.72
246 248 1.535462 CATCCTTTCCGACCAACACAC 59.465 52.381 0.00 0.00 0.00 3.82
247 249 0.542333 TCCTTTCCGACCAACACACA 59.458 50.000 0.00 0.00 0.00 3.72
248 250 0.944386 CCTTTCCGACCAACACACAG 59.056 55.000 0.00 0.00 0.00 3.66
249 251 1.474320 CCTTTCCGACCAACACACAGA 60.474 52.381 0.00 0.00 0.00 3.41
250 252 1.867233 CTTTCCGACCAACACACAGAG 59.133 52.381 0.00 0.00 0.00 3.35
251 253 0.531974 TTCCGACCAACACACAGAGC 60.532 55.000 0.00 0.00 0.00 4.09
252 254 1.069765 CCGACCAACACACAGAGCT 59.930 57.895 0.00 0.00 0.00 4.09
253 255 0.317160 CCGACCAACACACAGAGCTA 59.683 55.000 0.00 0.00 0.00 3.32
254 256 1.670087 CCGACCAACACACAGAGCTAG 60.670 57.143 0.00 0.00 0.00 3.42
255 257 1.433534 GACCAACACACAGAGCTAGC 58.566 55.000 6.62 6.62 0.00 3.42
257 259 0.674895 CCAACACACAGAGCTAGCCC 60.675 60.000 12.13 0.00 0.00 5.19
259 261 2.172483 AACACACAGAGCTAGCCCCG 62.172 60.000 12.13 1.86 0.00 5.73
261 263 4.880537 CACAGAGCTAGCCCCGCG 62.881 72.222 12.13 0.00 0.00 6.46
279 281 1.737838 CGCCCACAGCTGAAAGAATA 58.262 50.000 23.35 0.00 40.39 1.75
281 283 2.159517 CGCCCACAGCTGAAAGAATAAC 60.160 50.000 23.35 0.00 40.39 1.89
284 286 3.562176 CCCACAGCTGAAAGAATAACCCT 60.562 47.826 23.35 0.00 34.07 4.34
285 287 3.441572 CCACAGCTGAAAGAATAACCCTG 59.558 47.826 23.35 2.70 34.07 4.45
286 288 3.084786 ACAGCTGAAAGAATAACCCTGC 58.915 45.455 23.35 0.00 34.07 4.85
369 372 0.660488 GTCACCATGCACGTGAAACA 59.340 50.000 22.23 8.43 41.70 2.83
372 375 0.465460 ACCATGCACGTGAAACAGGT 60.465 50.000 22.23 15.97 35.74 4.00
373 376 0.238289 CCATGCACGTGAAACAGGTC 59.762 55.000 22.23 0.00 35.74 3.85
392 399 3.423154 GCTTTCGACACCTGCCCG 61.423 66.667 0.00 0.00 0.00 6.13
454 461 2.361610 AAGGAAGCATGCACCCCG 60.362 61.111 21.98 0.00 0.00 5.73
501 508 4.740822 ACATTCCCTGTGCCCGCC 62.741 66.667 0.00 0.00 36.48 6.13
568 575 2.031465 AACGCCAACCTACACCCG 59.969 61.111 0.00 0.00 0.00 5.28
573 580 1.375523 CCAACCTACACCCGAGCAC 60.376 63.158 0.00 0.00 0.00 4.40
578 585 4.367023 TACACCCGAGCACGCACC 62.367 66.667 0.00 0.00 38.29 5.01
614 635 4.977963 CCATTAATTTGCGTGGTGATCATC 59.022 41.667 0.00 0.00 0.00 2.92
628 649 5.781818 TGGTGATCATCATCAGGAGCTTATA 59.218 40.000 4.01 0.00 39.86 0.98
629 650 6.442885 TGGTGATCATCATCAGGAGCTTATAT 59.557 38.462 4.01 0.00 39.86 0.86
644 665 5.715070 AGCTTATATTACGGCAGACAGATC 58.285 41.667 0.00 0.00 0.00 2.75
659 680 2.246469 CAGATCCATCCATCGGTCTCT 58.754 52.381 0.00 0.00 0.00 3.10
661 682 1.201181 GATCCATCCATCGGTCTCTCG 59.799 57.143 0.00 0.00 0.00 4.04
662 683 1.006805 CCATCCATCGGTCTCTCGC 60.007 63.158 0.00 0.00 0.00 5.03
663 684 1.459455 CCATCCATCGGTCTCTCGCT 61.459 60.000 0.00 0.00 0.00 4.93
664 685 0.318529 CATCCATCGGTCTCTCGCTG 60.319 60.000 0.00 0.00 0.00 5.18
665 686 2.081425 ATCCATCGGTCTCTCGCTGC 62.081 60.000 0.00 0.00 0.00 5.25
666 687 2.780094 CCATCGGTCTCTCGCTGCT 61.780 63.158 0.00 0.00 0.00 4.24
667 688 1.588403 CATCGGTCTCTCGCTGCTG 60.588 63.158 0.00 0.00 0.00 4.41
668 689 3.423162 ATCGGTCTCTCGCTGCTGC 62.423 63.158 5.34 5.34 0.00 5.25
670 691 3.768922 GGTCTCTCGCTGCTGCCT 61.769 66.667 10.24 0.00 35.36 4.75
671 692 2.508887 GTCTCTCGCTGCTGCCTG 60.509 66.667 10.24 3.21 35.36 4.85
672 693 2.993840 TCTCTCGCTGCTGCCTGT 60.994 61.111 10.24 0.00 35.36 4.00
673 694 2.814341 CTCTCGCTGCTGCCTGTG 60.814 66.667 10.24 0.00 35.36 3.66
674 695 4.383861 TCTCGCTGCTGCCTGTGG 62.384 66.667 10.24 0.00 35.36 4.17
719 740 0.813610 TTGCACCACGTCCACAGAAG 60.814 55.000 0.00 0.00 0.00 2.85
848 879 1.302832 CCTGCCTGAGCTTTTCGGT 60.303 57.895 0.00 0.00 40.80 4.69
897 928 1.470098 GCAACACTCATCATCACCACC 59.530 52.381 0.00 0.00 0.00 4.61
933 964 1.853963 TACTCCTGCTCCAGAGAACC 58.146 55.000 0.00 0.00 32.44 3.62
935 966 0.823460 CTCCTGCTCCAGAGAACCTC 59.177 60.000 0.00 0.00 32.44 3.85
936 967 0.411452 TCCTGCTCCAGAGAACCTCT 59.589 55.000 0.00 0.00 42.11 3.69
967 998 2.088423 CCCTCGTATCCTAGCTAGCAG 58.912 57.143 18.83 11.93 0.00 4.24
998 1041 5.419471 CGATCTATACTAAGAAGGAAGGGGG 59.581 48.000 0.00 0.00 0.00 5.40
1066 1109 2.847234 ACGTGCTGGACCCCTTCA 60.847 61.111 0.00 0.00 0.00 3.02
1236 1283 9.935241 CAGTCACTATCTAATGCCTATATGTTT 57.065 33.333 0.00 0.00 0.00 2.83
1288 1335 9.665719 ACATGATCGATCGAGCTCTATATATAT 57.334 33.333 30.86 12.30 0.00 0.86
1421 1469 7.434307 GGTGTTGATCATGATTTTCTATGCTTG 59.566 37.037 10.14 0.00 0.00 4.01
1429 1477 9.985730 TCATGATTTTCTATGCTTGTTTTCTTT 57.014 25.926 0.00 0.00 0.00 2.52
1463 1511 6.183360 GGGAACATTGATTTTCGATGCTTCTA 60.183 38.462 4.92 0.00 41.03 2.10
1466 1514 8.847444 AACATTGATTTTCGATGCTTCTATTC 57.153 30.769 4.92 0.00 41.03 1.75
1474 1522 6.741992 TTCGATGCTTCTATTCACATGTTT 57.258 33.333 0.00 0.00 0.00 2.83
1475 1523 6.349973 TCGATGCTTCTATTCACATGTTTC 57.650 37.500 0.00 0.00 0.00 2.78
1476 1524 5.005682 TCGATGCTTCTATTCACATGTTTCG 59.994 40.000 0.00 0.00 0.00 3.46
1477 1525 5.220472 CGATGCTTCTATTCACATGTTTCGT 60.220 40.000 0.00 0.00 0.00 3.85
1518 1566 3.241995 GCACACGACTAATTAAAGCTCGG 60.242 47.826 0.00 0.00 0.00 4.63
1539 1844 8.936864 GCTCGGTCTTAAATACATATGCTTATT 58.063 33.333 1.58 0.00 0.00 1.40
1720 2025 7.825331 TTTCTCTGTCCCTAGATATACACAG 57.175 40.000 0.00 0.00 33.90 3.66
1788 2113 2.428187 CCCGGTACAACTGGTGCA 59.572 61.111 0.00 0.00 43.22 4.57
1791 2116 1.024579 CCGGTACAACTGGTGCATCC 61.025 60.000 0.00 0.00 39.82 3.51
2138 2470 4.601019 CCAGCCACGAATTAATTAAGCAG 58.399 43.478 0.00 0.00 0.00 4.24
2144 2476 7.171678 AGCCACGAATTAATTAAGCAGTATCTC 59.828 37.037 0.00 0.00 0.00 2.75
2281 2624 5.793817 TGGCTTGGTACTGCACTATATATG 58.206 41.667 0.00 0.00 0.00 1.78
2361 2705 2.684881 GCCATGTGCAACTTAGTGCTAT 59.315 45.455 0.00 1.90 45.17 2.97
2429 2781 7.128331 GTGCATGAACATCAGTCAACATATAC 58.872 38.462 0.00 0.00 0.00 1.47
2485 2837 2.062779 GCGACTGCTACAAGACACG 58.937 57.895 0.00 0.00 38.39 4.49
2527 2879 2.097954 GCAGTAGCAAAGCACATGCATA 59.902 45.455 6.64 0.00 46.22 3.14
2546 2898 4.436852 GCATATGTTGGGTCTTGTACAACG 60.437 45.833 3.59 1.56 45.48 4.10
2547 2899 1.301423 TGTTGGGTCTTGTACAACGC 58.699 50.000 3.59 6.00 45.48 4.84
2584 2936 7.537715 TGGCAATATAATCAAGTGTCAAGTTG 58.462 34.615 0.00 0.00 37.97 3.16
2614 2968 0.742281 CGGTGGCTTCTCTGTGATGG 60.742 60.000 0.00 0.00 0.00 3.51
2629 2983 9.330063 TCTCTGTGATGGTGAACAATATTAATC 57.670 33.333 0.00 0.00 0.00 1.75
2654 3012 1.466167 GTGCGCTCATCAATCTGTGTT 59.534 47.619 9.73 0.00 0.00 3.32
2733 3091 7.106663 CGTCCTCGGTTTCAGAAATATATTC 57.893 40.000 0.00 0.00 0.00 1.75
2813 3171 4.684242 GTGCGTATAATGATCGGTTCATCA 59.316 41.667 2.24 0.00 44.51 3.07
2819 3177 2.985957 TGATCGGTTCATCATCAGCA 57.014 45.000 0.00 0.00 0.00 4.41
2848 3207 3.850010 GCCTTTCGAACTTCAAAGTGAGC 60.850 47.826 0.00 0.00 39.66 4.26
2849 3208 3.312421 CCTTTCGAACTTCAAAGTGAGCA 59.688 43.478 0.00 0.00 39.66 4.26
2850 3209 4.023707 CCTTTCGAACTTCAAAGTGAGCAT 60.024 41.667 0.00 0.00 39.66 3.79
2851 3210 4.472691 TTCGAACTTCAAAGTGAGCATG 57.527 40.909 0.00 0.00 39.66 4.06
2852 3211 2.224079 TCGAACTTCAAAGTGAGCATGC 59.776 45.455 10.51 10.51 39.66 4.06
2866 3225 3.996363 TGAGCATGCATATATCGACAACC 59.004 43.478 21.98 0.00 0.00 3.77
2868 3227 4.645535 AGCATGCATATATCGACAACCTT 58.354 39.130 21.98 0.00 0.00 3.50
2876 3235 8.609176 TGCATATATCGACAACCTTTTTAACTC 58.391 33.333 0.00 0.00 0.00 3.01
2882 3241 5.881443 TCGACAACCTTTTTAACTCTTTCCA 59.119 36.000 0.00 0.00 0.00 3.53
2888 3247 4.021981 CCTTTTTAACTCTTTCCAGGCCTG 60.022 45.833 26.87 26.87 0.00 4.85
2898 3257 2.677875 CAGGCCTGGGCTTGGTTC 60.678 66.667 26.14 0.00 43.25 3.62
2905 3264 0.593128 CTGGGCTTGGTTCGACTTTG 59.407 55.000 0.00 0.00 0.00 2.77
2916 3275 2.866762 GTTCGACTTTGTCAGCTCTTGT 59.133 45.455 0.00 0.00 32.09 3.16
2939 3298 2.435372 TCAGCTTCCTCTCTCCTCTC 57.565 55.000 0.00 0.00 0.00 3.20
2940 3299 1.922447 TCAGCTTCCTCTCTCCTCTCT 59.078 52.381 0.00 0.00 0.00 3.10
2941 3300 2.092429 TCAGCTTCCTCTCTCCTCTCTC 60.092 54.545 0.00 0.00 0.00 3.20
2942 3301 1.922447 AGCTTCCTCTCTCCTCTCTCA 59.078 52.381 0.00 0.00 0.00 3.27
2943 3302 2.515429 AGCTTCCTCTCTCCTCTCTCAT 59.485 50.000 0.00 0.00 0.00 2.90
2944 3303 2.887152 GCTTCCTCTCTCCTCTCTCATC 59.113 54.545 0.00 0.00 0.00 2.92
2945 3304 3.435601 GCTTCCTCTCTCCTCTCTCATCT 60.436 52.174 0.00 0.00 0.00 2.90
2946 3305 4.796606 CTTCCTCTCTCCTCTCTCATCTT 58.203 47.826 0.00 0.00 0.00 2.40
2947 3306 4.169059 TCCTCTCTCCTCTCTCATCTTG 57.831 50.000 0.00 0.00 0.00 3.02
2948 3307 3.527253 TCCTCTCTCCTCTCTCATCTTGT 59.473 47.826 0.00 0.00 0.00 3.16
2949 3308 3.885297 CCTCTCTCCTCTCTCATCTTGTC 59.115 52.174 0.00 0.00 0.00 3.18
2950 3309 4.385643 CCTCTCTCCTCTCTCATCTTGTCT 60.386 50.000 0.00 0.00 0.00 3.41
2951 3310 5.191727 TCTCTCCTCTCTCATCTTGTCTT 57.808 43.478 0.00 0.00 0.00 3.01
2952 3311 5.579047 TCTCTCCTCTCTCATCTTGTCTTT 58.421 41.667 0.00 0.00 0.00 2.52
2953 3312 5.652014 TCTCTCCTCTCTCATCTTGTCTTTC 59.348 44.000 0.00 0.00 0.00 2.62
2954 3313 5.328565 TCTCCTCTCTCATCTTGTCTTTCA 58.671 41.667 0.00 0.00 0.00 2.69
2955 3314 5.418524 TCTCCTCTCTCATCTTGTCTTTCAG 59.581 44.000 0.00 0.00 0.00 3.02
2956 3315 5.083122 TCCTCTCTCATCTTGTCTTTCAGT 58.917 41.667 0.00 0.00 0.00 3.41
2957 3316 6.249192 TCCTCTCTCATCTTGTCTTTCAGTA 58.751 40.000 0.00 0.00 0.00 2.74
2958 3317 6.376864 TCCTCTCTCATCTTGTCTTTCAGTAG 59.623 42.308 0.00 0.00 0.00 2.57
2959 3318 6.376864 CCTCTCTCATCTTGTCTTTCAGTAGA 59.623 42.308 0.00 0.00 0.00 2.59
2960 3319 7.068593 CCTCTCTCATCTTGTCTTTCAGTAGAT 59.931 40.741 0.00 0.00 0.00 1.98
2961 3320 7.770201 TCTCTCATCTTGTCTTTCAGTAGATG 58.230 38.462 0.00 0.00 42.12 2.90
2962 3321 6.871844 TCTCATCTTGTCTTTCAGTAGATGG 58.128 40.000 0.00 0.00 41.45 3.51
2963 3322 5.423015 TCATCTTGTCTTTCAGTAGATGGC 58.577 41.667 0.00 0.00 41.45 4.40
2964 3323 4.890158 TCTTGTCTTTCAGTAGATGGCA 57.110 40.909 0.00 0.00 0.00 4.92
2965 3324 5.426689 TCTTGTCTTTCAGTAGATGGCAT 57.573 39.130 0.00 0.00 0.00 4.40
2966 3325 5.809001 TCTTGTCTTTCAGTAGATGGCATT 58.191 37.500 0.00 0.00 0.00 3.56
2967 3326 6.946340 TCTTGTCTTTCAGTAGATGGCATTA 58.054 36.000 0.00 0.00 0.00 1.90
2968 3327 7.394016 TCTTGTCTTTCAGTAGATGGCATTAA 58.606 34.615 0.00 0.00 0.00 1.40
2969 3328 7.550551 TCTTGTCTTTCAGTAGATGGCATTAAG 59.449 37.037 0.00 0.00 0.00 1.85
2970 3329 6.946340 TGTCTTTCAGTAGATGGCATTAAGA 58.054 36.000 0.00 0.61 0.00 2.10
2971 3330 7.394016 TGTCTTTCAGTAGATGGCATTAAGAA 58.606 34.615 0.00 0.00 0.00 2.52
2972 3331 7.550551 TGTCTTTCAGTAGATGGCATTAAGAAG 59.449 37.037 0.00 1.06 0.00 2.85
2973 3332 7.550906 GTCTTTCAGTAGATGGCATTAAGAAGT 59.449 37.037 0.00 0.00 0.00 3.01
2974 3333 8.758829 TCTTTCAGTAGATGGCATTAAGAAGTA 58.241 33.333 0.00 0.00 0.00 2.24
2975 3334 8.948631 TTTCAGTAGATGGCATTAAGAAGTAG 57.051 34.615 0.00 0.00 0.00 2.57
2976 3335 7.055667 TCAGTAGATGGCATTAAGAAGTAGG 57.944 40.000 0.00 0.00 0.00 3.18
2977 3336 6.042093 TCAGTAGATGGCATTAAGAAGTAGGG 59.958 42.308 0.00 0.00 0.00 3.53
2978 3337 4.092116 AGATGGCATTAAGAAGTAGGGC 57.908 45.455 0.00 0.00 0.00 5.19
2979 3338 3.459598 AGATGGCATTAAGAAGTAGGGCA 59.540 43.478 0.00 0.00 35.26 5.36
2980 3339 3.281727 TGGCATTAAGAAGTAGGGCAG 57.718 47.619 0.00 0.00 0.00 4.85
2981 3340 1.950216 GGCATTAAGAAGTAGGGCAGC 59.050 52.381 0.00 0.00 0.00 5.25
2982 3341 2.643551 GCATTAAGAAGTAGGGCAGCA 58.356 47.619 0.00 0.00 0.00 4.41
2983 3342 3.016736 GCATTAAGAAGTAGGGCAGCAA 58.983 45.455 0.00 0.00 0.00 3.91
2984 3343 3.065925 GCATTAAGAAGTAGGGCAGCAAG 59.934 47.826 0.00 0.00 0.00 4.01
2985 3344 4.265073 CATTAAGAAGTAGGGCAGCAAGT 58.735 43.478 0.00 0.00 0.00 3.16
2986 3345 5.428253 CATTAAGAAGTAGGGCAGCAAGTA 58.572 41.667 0.00 0.00 0.00 2.24
2987 3346 3.618690 AAGAAGTAGGGCAGCAAGTAG 57.381 47.619 0.00 0.00 0.00 2.57
2988 3347 2.541466 AGAAGTAGGGCAGCAAGTAGT 58.459 47.619 0.00 0.00 0.00 2.73
2989 3348 3.709587 AGAAGTAGGGCAGCAAGTAGTA 58.290 45.455 0.00 0.00 0.00 1.82
2990 3349 3.447944 AGAAGTAGGGCAGCAAGTAGTAC 59.552 47.826 0.00 0.00 0.00 2.73
2991 3350 3.103080 AGTAGGGCAGCAAGTAGTACT 57.897 47.619 0.00 0.00 0.00 2.73
2992 3351 3.025262 AGTAGGGCAGCAAGTAGTACTC 58.975 50.000 2.58 0.00 0.00 2.59
2993 3352 1.196012 AGGGCAGCAAGTAGTACTCC 58.804 55.000 2.58 0.00 0.00 3.85
2994 3353 0.178301 GGGCAGCAAGTAGTACTCCC 59.822 60.000 2.58 5.78 0.00 4.30
2995 3354 1.196012 GGCAGCAAGTAGTACTCCCT 58.804 55.000 2.58 0.16 0.00 4.20
2996 3355 1.137282 GGCAGCAAGTAGTACTCCCTC 59.863 57.143 2.58 0.00 0.00 4.30
2997 3356 1.137282 GCAGCAAGTAGTACTCCCTCC 59.863 57.143 2.58 0.00 0.00 4.30
2998 3357 2.457598 CAGCAAGTAGTACTCCCTCCA 58.542 52.381 2.58 0.00 0.00 3.86
2999 3358 3.034635 CAGCAAGTAGTACTCCCTCCAT 58.965 50.000 2.58 0.00 0.00 3.41
3000 3359 3.068873 CAGCAAGTAGTACTCCCTCCATC 59.931 52.174 2.58 0.00 0.00 3.51
3001 3360 2.365941 GCAAGTAGTACTCCCTCCATCC 59.634 54.545 2.58 0.00 0.00 3.51
3002 3361 2.966516 CAAGTAGTACTCCCTCCATCCC 59.033 54.545 2.58 0.00 0.00 3.85
3003 3362 2.224077 AGTAGTACTCCCTCCATCCCA 58.776 52.381 0.00 0.00 0.00 4.37
3004 3363 2.798368 AGTAGTACTCCCTCCATCCCAT 59.202 50.000 0.00 0.00 0.00 4.00
3005 3364 3.995077 AGTAGTACTCCCTCCATCCCATA 59.005 47.826 0.00 0.00 0.00 2.74
3006 3365 4.422592 AGTAGTACTCCCTCCATCCCATAA 59.577 45.833 0.00 0.00 0.00 1.90
3007 3366 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
3008 3367 4.171234 AGTACTCCCTCCATCCCATAATG 58.829 47.826 0.00 0.00 0.00 1.90
3009 3368 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
3010 3369 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
3011 3370 4.171234 ACTCCCTCCATCCCATAATGTAG 58.829 47.826 0.00 0.00 0.00 2.74
3012 3371 3.521126 CTCCCTCCATCCCATAATGTAGG 59.479 52.174 0.00 0.00 33.66 3.18
3013 3372 3.145861 TCCCTCCATCCCATAATGTAGGA 59.854 47.826 0.00 0.00 35.36 2.94
3014 3373 3.264450 CCCTCCATCCCATAATGTAGGAC 59.736 52.174 0.00 0.00 35.36 3.85
3015 3374 3.055819 CCTCCATCCCATAATGTAGGACG 60.056 52.174 0.00 0.00 35.36 4.79
3016 3375 3.578716 CTCCATCCCATAATGTAGGACGT 59.421 47.826 0.00 0.00 30.97 4.34
3017 3376 3.971305 TCCATCCCATAATGTAGGACGTT 59.029 43.478 0.00 0.00 30.97 3.99
3018 3377 4.410883 TCCATCCCATAATGTAGGACGTTT 59.589 41.667 0.00 0.00 30.97 3.60
3019 3378 5.104277 TCCATCCCATAATGTAGGACGTTTT 60.104 40.000 0.00 0.00 30.97 2.43
3020 3379 5.592688 CCATCCCATAATGTAGGACGTTTTT 59.407 40.000 0.00 0.00 30.97 1.94
3021 3380 6.768861 CCATCCCATAATGTAGGACGTTTTTA 59.231 38.462 0.00 0.00 30.97 1.52
3022 3381 7.283580 CCATCCCATAATGTAGGACGTTTTTAA 59.716 37.037 0.00 0.00 30.97 1.52
3023 3382 7.852971 TCCCATAATGTAGGACGTTTTTAAG 57.147 36.000 0.00 0.00 0.00 1.85
3024 3383 7.396418 TCCCATAATGTAGGACGTTTTTAAGT 58.604 34.615 0.00 0.00 0.00 2.24
3025 3384 7.334921 TCCCATAATGTAGGACGTTTTTAAGTG 59.665 37.037 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.756538 CACTTTTGTTGCCCTGGTTCT 59.243 47.619 0.00 0.00 0.00 3.01
58 60 4.312443 TCGGCTCGAAATAAACTCTTTGT 58.688 39.130 0.00 0.00 31.06 2.83
61 63 3.522553 CCTCGGCTCGAAATAAACTCTT 58.477 45.455 0.00 0.00 34.74 2.85
79 81 1.204146 TAATGCTCCACCTGTCCCTC 58.796 55.000 0.00 0.00 0.00 4.30
101 103 2.435059 GCCAGGCTCAAGGACGAC 60.435 66.667 3.29 0.00 0.00 4.34
115 117 1.341913 ATATGTACAGTGCCGGGCCA 61.342 55.000 17.97 6.18 0.00 5.36
193 195 4.379652 ACTTTCCCGAAACGTTAGCTTAA 58.620 39.130 0.00 0.00 0.00 1.85
241 243 2.650116 CGGGGCTAGCTCTGTGTGT 61.650 63.158 15.86 0.00 0.00 3.72
242 244 2.185350 CGGGGCTAGCTCTGTGTG 59.815 66.667 15.86 0.00 0.00 3.82
243 245 3.775654 GCGGGGCTAGCTCTGTGT 61.776 66.667 24.33 0.00 0.00 3.72
244 246 4.880537 CGCGGGGCTAGCTCTGTG 62.881 72.222 24.33 23.21 0.00 3.66
261 263 2.164422 GGTTATTCTTTCAGCTGTGGGC 59.836 50.000 14.67 0.00 42.19 5.36
263 265 3.441572 CAGGGTTATTCTTTCAGCTGTGG 59.558 47.826 14.67 5.36 0.00 4.17
265 267 3.084786 GCAGGGTTATTCTTTCAGCTGT 58.915 45.455 14.67 0.00 0.00 4.40
270 272 2.025321 GGAGGGCAGGGTTATTCTTTCA 60.025 50.000 0.00 0.00 0.00 2.69
272 274 2.000048 TGGAGGGCAGGGTTATTCTTT 59.000 47.619 0.00 0.00 0.00 2.52
279 281 0.259938 GATCATTGGAGGGCAGGGTT 59.740 55.000 0.00 0.00 0.00 4.11
281 283 0.110104 GAGATCATTGGAGGGCAGGG 59.890 60.000 0.00 0.00 0.00 4.45
284 286 1.355718 GGGGAGATCATTGGAGGGCA 61.356 60.000 0.00 0.00 0.00 5.36
285 287 1.458045 GGGGAGATCATTGGAGGGC 59.542 63.158 0.00 0.00 0.00 5.19
286 288 1.772819 CGGGGGAGATCATTGGAGGG 61.773 65.000 0.00 0.00 0.00 4.30
372 375 2.357034 GCAGGTGTCGAAAGCCGA 60.357 61.111 0.00 0.00 46.35 5.54
373 376 3.423154 GGCAGGTGTCGAAAGCCG 61.423 66.667 0.00 0.00 35.42 5.52
545 552 1.666872 GTAGGTTGGCGTTGCGTCT 60.667 57.895 0.00 0.00 30.55 4.18
556 563 1.736645 CGTGCTCGGGTGTAGGTTG 60.737 63.158 0.00 0.00 0.00 3.77
578 585 1.540267 TTAATGGTGGTTTCCAGGCG 58.460 50.000 0.00 0.00 41.05 5.52
580 587 4.252878 GCAAATTAATGGTGGTTTCCAGG 58.747 43.478 0.00 0.00 41.05 4.45
582 589 3.322254 ACGCAAATTAATGGTGGTTTCCA 59.678 39.130 0.00 0.00 42.01 3.53
614 635 4.820897 TGCCGTAATATAAGCTCCTGATG 58.179 43.478 0.00 0.00 0.00 3.07
628 649 2.037772 GGATGGATCTGTCTGCCGTAAT 59.962 50.000 0.00 0.00 0.00 1.89
629 650 1.412710 GGATGGATCTGTCTGCCGTAA 59.587 52.381 0.00 0.00 0.00 3.18
644 665 1.006805 GCGAGAGACCGATGGATGG 60.007 63.158 0.00 0.00 0.00 3.51
668 689 4.351054 GACCCCCACAGCCACAGG 62.351 72.222 0.00 0.00 0.00 4.00
669 690 2.638981 TTTGACCCCCACAGCCACAG 62.639 60.000 0.00 0.00 0.00 3.66
670 691 2.230189 TTTTGACCCCCACAGCCACA 62.230 55.000 0.00 0.00 0.00 4.17
671 692 1.456705 TTTTGACCCCCACAGCCAC 60.457 57.895 0.00 0.00 0.00 5.01
672 693 1.152567 CTTTTGACCCCCACAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
673 694 2.574018 GCTTTTGACCCCCACAGCC 61.574 63.158 0.00 0.00 0.00 4.85
674 695 2.919494 CGCTTTTGACCCCCACAGC 61.919 63.158 0.00 0.00 0.00 4.40
719 740 1.808133 CGCCTCCCTCTGTAGAATTGC 60.808 57.143 0.00 0.00 0.00 3.56
848 879 2.635915 CCGGTGGCCACTTTATATAGGA 59.364 50.000 33.91 0.00 0.00 2.94
897 928 4.081198 AGGAGTAAGCTGTGAATTGAGGAG 60.081 45.833 0.00 0.00 0.00 3.69
937 968 0.878086 GATACGAGGGAGCAAGCAGC 60.878 60.000 0.00 0.00 46.19 5.25
967 998 3.341823 TCTTAGTATAGATCGACCGGCC 58.658 50.000 0.00 0.00 0.00 6.13
998 1041 3.406595 CTGTCCCTCCCGGCCATTC 62.407 68.421 2.24 0.00 0.00 2.67
1066 1109 1.537889 TGAGGTTGGTGGTCCGGAT 60.538 57.895 7.81 0.00 36.30 4.18
1236 1283 0.108615 GGCGAGCACTTTCAGAGCTA 60.109 55.000 0.00 0.00 42.16 3.32
1288 1335 4.954202 AGAATCATCTTCCCACACGTACTA 59.046 41.667 0.00 0.00 29.15 1.82
1289 1336 3.769844 AGAATCATCTTCCCACACGTACT 59.230 43.478 0.00 0.00 29.15 2.73
1330 1377 1.069049 GTGCCTGCCAAGACAAACATT 59.931 47.619 0.00 0.00 0.00 2.71
1421 1469 5.412640 TGTTCCCCGAAAAGAAAAGAAAAC 58.587 37.500 0.00 0.00 0.00 2.43
1428 1476 5.799827 AATCAATGTTCCCCGAAAAGAAA 57.200 34.783 0.00 0.00 0.00 2.52
1429 1477 5.799827 AAATCAATGTTCCCCGAAAAGAA 57.200 34.783 0.00 0.00 0.00 2.52
1430 1478 5.563867 CGAAAATCAATGTTCCCCGAAAAGA 60.564 40.000 0.00 0.00 0.00 2.52
1431 1479 4.621034 CGAAAATCAATGTTCCCCGAAAAG 59.379 41.667 0.00 0.00 0.00 2.27
1432 1480 4.278669 TCGAAAATCAATGTTCCCCGAAAA 59.721 37.500 0.00 0.00 0.00 2.29
1433 1481 3.821600 TCGAAAATCAATGTTCCCCGAAA 59.178 39.130 0.00 0.00 0.00 3.46
1474 1522 3.394674 TGCTAGGACAAACATGAACGA 57.605 42.857 0.00 0.00 0.00 3.85
1475 1523 3.667960 GCTTGCTAGGACAAACATGAACG 60.668 47.826 0.00 0.00 0.00 3.95
1476 1524 3.253188 TGCTTGCTAGGACAAACATGAAC 59.747 43.478 0.00 0.00 0.00 3.18
1477 1525 3.253188 GTGCTTGCTAGGACAAACATGAA 59.747 43.478 14.44 0.00 41.88 2.57
1539 1844 7.416964 AGAGAAGTAGAGAGTACTACCGTAA 57.583 40.000 0.00 0.00 42.34 3.18
1542 1847 7.042797 ACTAGAGAAGTAGAGAGTACTACCG 57.957 44.000 0.00 0.00 42.34 4.02
1720 2025 3.032017 AGACACACACACATGAGCTAC 57.968 47.619 0.00 0.00 0.00 3.58
1791 2116 1.153289 CATCACCTCCTGCCCGAAG 60.153 63.158 0.00 0.00 0.00 3.79
1887 2212 4.789075 CACCCGGGAGCGTACACG 62.789 72.222 32.02 0.00 43.27 4.49
2055 2387 2.423185 TGGATAATTTGCTGACTTGGCG 59.577 45.455 0.00 0.00 0.00 5.69
2056 2388 4.176271 GTTGGATAATTTGCTGACTTGGC 58.824 43.478 0.00 0.00 0.00 4.52
2057 2389 4.082787 ACGTTGGATAATTTGCTGACTTGG 60.083 41.667 0.00 0.00 0.00 3.61
2138 2470 8.926710 GTGTATGTGTTGCCAATATAGAGATAC 58.073 37.037 0.00 0.00 0.00 2.24
2144 2476 8.607441 ATGTAGTGTATGTGTTGCCAATATAG 57.393 34.615 0.00 0.00 0.00 1.31
2180 2512 7.227910 TGCGGCTAGTTATACATCGATCATATA 59.772 37.037 0.00 0.00 0.00 0.86
2181 2513 6.039382 TGCGGCTAGTTATACATCGATCATAT 59.961 38.462 0.00 0.00 0.00 1.78
2244 2585 3.011708 ACCAAGCCATTGATCTAGGGTTT 59.988 43.478 9.54 6.90 40.84 3.27
2281 2624 4.635765 TGGCATCAGTTTATTGCAGACTAC 59.364 41.667 0.00 0.00 38.12 2.73
2361 2705 3.134623 CCAACCTGCAGATATGTACCAGA 59.865 47.826 17.39 0.00 0.00 3.86
2429 2781 4.707105 TGTCTCCCATGCATAACTATGTG 58.293 43.478 0.00 0.00 36.11 3.21
2485 2837 3.489785 GCGCTAAGTGTGTACATATCACC 59.510 47.826 10.54 0.00 35.25 4.02
2527 2879 1.877443 GCGTTGTACAAGACCCAACAT 59.123 47.619 8.98 0.00 38.65 2.71
2546 2898 7.286087 TGATTATATTGCCATAATCATGAGGGC 59.714 37.037 18.42 18.42 45.98 5.19
2547 2899 8.756486 TGATTATATTGCCATAATCATGAGGG 57.244 34.615 15.90 1.34 45.98 4.30
2584 2936 0.249398 AAGCCACCGGTCTCATACAC 59.751 55.000 2.59 0.00 0.00 2.90
2614 2968 6.422223 CGCACCAGAGATTAATATTGTTCAC 58.578 40.000 0.00 0.00 0.00 3.18
2629 2983 0.935898 GATTGATGAGCGCACCAGAG 59.064 55.000 11.47 0.00 0.00 3.35
2654 3012 7.280428 CGCTACCTAGCTAGCATCTAGTATAAA 59.720 40.741 18.83 0.00 46.85 1.40
2730 3088 4.895224 TCTGAAGCACGATACTACGAAT 57.105 40.909 0.00 0.00 37.03 3.34
2733 3091 7.078851 AGATATTTCTGAAGCACGATACTACG 58.921 38.462 0.00 0.00 39.31 3.51
2801 3159 2.831333 AGTGCTGATGATGAACCGATC 58.169 47.619 0.00 0.00 0.00 3.69
2813 3171 0.242017 GAAAGGCGCAAAGTGCTGAT 59.758 50.000 10.83 0.00 42.25 2.90
2819 3177 1.002792 GAAGTTCGAAAGGCGCAAAGT 60.003 47.619 10.83 0.00 40.61 2.66
2848 3207 9.169468 GTTAAAAAGGTTGTCGATATATGCATG 57.831 33.333 10.16 0.00 0.00 4.06
2849 3208 9.120538 AGTTAAAAAGGTTGTCGATATATGCAT 57.879 29.630 3.79 3.79 0.00 3.96
2850 3209 8.500753 AGTTAAAAAGGTTGTCGATATATGCA 57.499 30.769 0.00 0.00 0.00 3.96
2851 3210 8.827677 AGAGTTAAAAAGGTTGTCGATATATGC 58.172 33.333 0.00 0.00 0.00 3.14
2866 3225 5.126396 CAGGCCTGGAAAGAGTTAAAAAG 57.874 43.478 26.14 0.00 0.00 2.27
2882 3241 4.351054 CGAACCAAGCCCAGGCCT 62.351 66.667 0.00 0.00 43.17 5.19
2888 3247 0.591659 GACAAAGTCGAACCAAGCCC 59.408 55.000 0.00 0.00 0.00 5.19
2895 3254 2.866762 ACAAGAGCTGACAAAGTCGAAC 59.133 45.455 0.00 0.00 34.95 3.95
2898 3257 2.473816 TGACAAGAGCTGACAAAGTCG 58.526 47.619 0.00 0.00 34.95 4.18
2905 3264 2.697654 AGCTGAATGACAAGAGCTGAC 58.302 47.619 0.00 0.00 0.00 3.51
2916 3275 3.030291 GAGGAGAGAGGAAGCTGAATGA 58.970 50.000 0.00 0.00 0.00 2.57
2939 3298 5.523188 GCCATCTACTGAAAGACAAGATGAG 59.477 44.000 11.23 4.27 44.31 2.90
2940 3299 5.046376 TGCCATCTACTGAAAGACAAGATGA 60.046 40.000 11.23 0.00 44.31 2.92
2941 3300 5.181009 TGCCATCTACTGAAAGACAAGATG 58.819 41.667 0.00 0.00 42.84 2.90
2942 3301 5.426689 TGCCATCTACTGAAAGACAAGAT 57.573 39.130 0.00 0.00 37.43 2.40
2943 3302 4.890158 TGCCATCTACTGAAAGACAAGA 57.110 40.909 0.00 0.00 37.43 3.02
2944 3303 7.550551 TCTTAATGCCATCTACTGAAAGACAAG 59.449 37.037 0.00 0.00 37.43 3.16
2945 3304 7.394016 TCTTAATGCCATCTACTGAAAGACAA 58.606 34.615 0.00 0.00 37.43 3.18
2946 3305 6.946340 TCTTAATGCCATCTACTGAAAGACA 58.054 36.000 0.00 0.00 37.43 3.41
2947 3306 7.550906 ACTTCTTAATGCCATCTACTGAAAGAC 59.449 37.037 0.00 0.00 37.43 3.01
2948 3307 7.624549 ACTTCTTAATGCCATCTACTGAAAGA 58.375 34.615 0.00 0.00 37.43 2.52
2949 3308 7.856145 ACTTCTTAATGCCATCTACTGAAAG 57.144 36.000 0.00 0.00 42.29 2.62
2950 3309 7.987458 CCTACTTCTTAATGCCATCTACTGAAA 59.013 37.037 0.00 0.00 0.00 2.69
2951 3310 7.419057 CCCTACTTCTTAATGCCATCTACTGAA 60.419 40.741 0.00 0.00 0.00 3.02
2952 3311 6.042093 CCCTACTTCTTAATGCCATCTACTGA 59.958 42.308 0.00 0.00 0.00 3.41
2953 3312 6.226787 CCCTACTTCTTAATGCCATCTACTG 58.773 44.000 0.00 0.00 0.00 2.74
2954 3313 5.221742 GCCCTACTTCTTAATGCCATCTACT 60.222 44.000 0.00 0.00 0.00 2.57
2955 3314 4.998033 GCCCTACTTCTTAATGCCATCTAC 59.002 45.833 0.00 0.00 0.00 2.59
2956 3315 4.658435 TGCCCTACTTCTTAATGCCATCTA 59.342 41.667 0.00 0.00 0.00 1.98
2957 3316 3.459598 TGCCCTACTTCTTAATGCCATCT 59.540 43.478 0.00 0.00 0.00 2.90
2958 3317 3.817647 CTGCCCTACTTCTTAATGCCATC 59.182 47.826 0.00 0.00 0.00 3.51
2959 3318 3.825328 CTGCCCTACTTCTTAATGCCAT 58.175 45.455 0.00 0.00 0.00 4.40
2960 3319 2.683742 GCTGCCCTACTTCTTAATGCCA 60.684 50.000 0.00 0.00 0.00 4.92
2961 3320 1.950216 GCTGCCCTACTTCTTAATGCC 59.050 52.381 0.00 0.00 0.00 4.40
2962 3321 2.643551 TGCTGCCCTACTTCTTAATGC 58.356 47.619 0.00 0.00 0.00 3.56
2963 3322 4.265073 ACTTGCTGCCCTACTTCTTAATG 58.735 43.478 0.00 0.00 0.00 1.90
2964 3323 4.576330 ACTTGCTGCCCTACTTCTTAAT 57.424 40.909 0.00 0.00 0.00 1.40
2965 3324 4.530946 ACTACTTGCTGCCCTACTTCTTAA 59.469 41.667 0.00 0.00 0.00 1.85
2966 3325 4.094476 ACTACTTGCTGCCCTACTTCTTA 58.906 43.478 0.00 0.00 0.00 2.10
2967 3326 2.907042 ACTACTTGCTGCCCTACTTCTT 59.093 45.455 0.00 0.00 0.00 2.52
2968 3327 2.541466 ACTACTTGCTGCCCTACTTCT 58.459 47.619 0.00 0.00 0.00 2.85
2969 3328 3.447944 AGTACTACTTGCTGCCCTACTTC 59.552 47.826 0.00 0.00 0.00 3.01
2970 3329 3.442076 AGTACTACTTGCTGCCCTACTT 58.558 45.455 0.00 0.00 0.00 2.24
2971 3330 3.025262 GAGTACTACTTGCTGCCCTACT 58.975 50.000 0.00 0.00 0.00 2.57
2972 3331 2.101082 GGAGTACTACTTGCTGCCCTAC 59.899 54.545 0.00 0.00 0.00 3.18
2973 3332 2.385803 GGAGTACTACTTGCTGCCCTA 58.614 52.381 0.00 0.00 0.00 3.53
2974 3333 1.196012 GGAGTACTACTTGCTGCCCT 58.804 55.000 0.00 0.00 0.00 5.19
2975 3334 0.178301 GGGAGTACTACTTGCTGCCC 59.822 60.000 4.77 0.32 41.92 5.36
2976 3335 3.762674 GGGAGTACTACTTGCTGCC 57.237 57.895 4.77 0.00 41.20 4.85
2977 3336 1.137282 GGAGGGAGTACTACTTGCTGC 59.863 57.143 4.77 0.00 0.00 5.25
2978 3337 2.457598 TGGAGGGAGTACTACTTGCTG 58.542 52.381 10.14 0.00 0.00 4.41
2979 3338 2.921834 TGGAGGGAGTACTACTTGCT 57.078 50.000 10.14 0.00 0.00 3.91
2980 3339 2.365941 GGATGGAGGGAGTACTACTTGC 59.634 54.545 4.77 2.97 0.00 4.01
2981 3340 2.966516 GGGATGGAGGGAGTACTACTTG 59.033 54.545 4.77 0.00 0.00 3.16
2982 3341 2.590611 TGGGATGGAGGGAGTACTACTT 59.409 50.000 4.77 0.00 0.00 2.24
2983 3342 2.224077 TGGGATGGAGGGAGTACTACT 58.776 52.381 4.77 1.85 0.00 2.57
2984 3343 2.769602 TGGGATGGAGGGAGTACTAC 57.230 55.000 0.00 0.00 0.00 2.73
2985 3344 5.162760 ACATTATGGGATGGAGGGAGTACTA 60.163 44.000 0.00 0.00 0.00 1.82
2986 3345 4.171234 CATTATGGGATGGAGGGAGTACT 58.829 47.826 0.00 0.00 0.00 2.73
2987 3346 3.910627 ACATTATGGGATGGAGGGAGTAC 59.089 47.826 0.00 0.00 0.00 2.73
2988 3347 4.228237 ACATTATGGGATGGAGGGAGTA 57.772 45.455 0.00 0.00 0.00 2.59
2989 3348 3.080660 ACATTATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
2990 3349 4.833478 CTACATTATGGGATGGAGGGAG 57.167 50.000 0.00 0.00 34.85 4.30
2994 3353 3.578716 ACGTCCTACATTATGGGATGGAG 59.421 47.826 12.21 0.00 46.88 3.86
2995 3354 3.583228 ACGTCCTACATTATGGGATGGA 58.417 45.455 12.21 4.79 46.88 3.41
2996 3355 4.351874 AACGTCCTACATTATGGGATGG 57.648 45.455 12.21 2.90 46.88 3.51
2998 3357 8.050930 ACTTAAAAACGTCCTACATTATGGGAT 58.949 33.333 0.00 0.00 40.69 3.85
2999 3358 7.334921 CACTTAAAAACGTCCTACATTATGGGA 59.665 37.037 0.00 0.00 35.07 4.37
3000 3359 7.469260 CACTTAAAAACGTCCTACATTATGGG 58.531 38.462 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.