AutoCloner

Multiple sequence alignment - TraesCS7D01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G111400	chr7D	100.000	1695	0	0	1716	3410	66988437	66986743	0.000000e+00	3131
1	TraesCS7D01G111400	chr7D	100.000	1301	0	0	1	1301	66990152	66988852	0.000000e+00	2403
2	TraesCS7D01G111400	chr7D	90.090	222	18	4	1	220	514912444	514912663	5.570000e-73	285
3	TraesCS7D01G111400	chr6A	97.840	1667	33	1	1747	3410	233813366	233815032	0.000000e+00	2876
4	TraesCS7D01G111400	chr6A	91.551	864	24	17	476	1301	233812390	233813242	0.000000e+00	1146
5	TraesCS7D01G111400	chr6A	84.778	427	36	14	474	881	134201333	134200917	5.300000e-108	401
6	TraesCS7D01G111400	chr6A	88.739	222	20	4	1	220	22972920	22973138	2.020000e-67	267
7	TraesCS7D01G111400	chr6A	96.850	127	4	0	476	602	558947678	558947552	2.670000e-51	213
8	TraesCS7D01G111400	chr6A	96.063	127	4	1	476	602	610384081	610383956	4.460000e-49	206
9	TraesCS7D01G111400	chr4A	97.840	1667	31	3	1747	3410	11706433	11708097	0.000000e+00	2874
10	TraesCS7D01G111400	chr4A	98.048	461	9	0	841	1301	11705850	11706310	0.000000e+00	802
11	TraesCS7D01G111400	chr4A	90.772	596	27	9	640	1207	28272559	28273154	0.000000e+00	771
12	TraesCS7D01G111400	chr4A	93.284	402	13	4	476	866	11705422	11705820	6.340000e-162	580
13	TraesCS7D01G111400	chr4A	96.748	123	4	0	476	598	549887454	549887332	4.460000e-49	206
14	TraesCS7D01G111400	chr2B	95.642	1698	38	8	1716	3410	621182981	621184645	0.000000e+00	2693
15	TraesCS7D01G111400	chr2B	91.197	727	19	9	602	1301	621182168	621182876	0.000000e+00	946
16	TraesCS7D01G111400	chr2B	86.036	222	27	4	1	220	386604380	386604599	5.690000e-58	235
17	TraesCS7D01G111400	chr4B	91.031	1639	128	11	1772	3396	550673906	550675539	0.000000e+00	2194
18	TraesCS7D01G111400	chr4B	92.133	1538	104	9	1772	3297	16551846	16553378	0.000000e+00	2154
19	TraesCS7D01G111400	chr4B	92.308	221	5	5	476	685	104746182	104745963	1.540000e-78	303
20	TraesCS7D01G111400	chr7A	90.737	1641	126	16	1772	3394	228677161	228675529	0.000000e+00	2165
21	TraesCS7D01G111400	chr7A	88.288	222	22	4	1	220	138096627	138096408	2.610000e-66	263
22	TraesCS7D01G111400	chr3B	92.068	1538	105	9	1772	3297	511031358	511029826	0.000000e+00	2148
23	TraesCS7D01G111400	chr3B	91.136	722	24	8	523	1207	395846864	395846146	0.000000e+00	942
24	TraesCS7D01G111400	chr2A	97.749	1244	25	3	2168	3410	642960941	642959700	0.000000e+00	2139
25	TraesCS7D01G111400	chr2A	90.636	833	28	11	473	1293	642962447	642961653	0.000000e+00	1061
26	TraesCS7D01G111400	chr1A	96.462	1187	18	6	1716	2883	121880943	121879762	0.000000e+00	1938
27	TraesCS7D01G111400	chr1A	88.833	797	36	23	512	1293	121882113	121881355	0.000000e+00	929
28	TraesCS7D01G111400	chr1A	88.182	220	22	4	3	220	213901436	213901653	3.380000e-65	259
29	TraesCS7D01G111400	chr7B	95.293	871	38	2	2540	3410	725790700	725791567	0.000000e+00	1378
30	TraesCS7D01G111400	chr7B	96.730	367	12	0	841	1207	553229395	553229761	2.250000e-171	612
31	TraesCS7D01G111400	chrUn	89.967	598	28	17	640	1207	391724490	391725085	0.000000e+00	743
32	TraesCS7D01G111400	chr3D	89.640	222	19	3	1	220	598714498	598714717	2.590000e-71	279
33	TraesCS7D01G111400	chr3D	89.189	222	20	3	1	220	598714838	598715057	1.210000e-69	274
34	TraesCS7D01G111400	chr5D	87.838	222	23	4	1	220	313818735	313818954	1.210000e-64	257
35	TraesCS7D01G111400	chr5A	99.206	126	1	0	477	602	554337233	554337358	9.520000e-56	228
36	TraesCS7D01G111400	chr5A	85.845	219	25	5	4	220	623626902	623626688	9.520000e-56	228
37	TraesCS7D01G111400	chr5B	96.899	129	4	0	474	602	599529185	599529057	2.060000e-52	217
38	TraesCS7D01G111400	chr5B	96.899	129	4	0	474	602	599545471	599545343	2.060000e-52	217
39	TraesCS7D01G111400	chr3A	92.308	143	10	1	461	602	652840455	652840313	5.770000e-48	202

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G111400	chr7D	66986743	66990152	3409	True	2767.000000	3131	100.000000	1	3410	2	chr7D.!!$R1	3409
1	TraesCS7D01G111400	chr6A	233812390	233815032	2642	False	2011.000000	2876	94.695500	476	3410	2	chr6A.!!$F2	2934
2	TraesCS7D01G111400	chr4A	11705422	11708097	2675	False	1418.666667	2874	96.390667	476	3410	3	chr4A.!!$F2	2934
3	TraesCS7D01G111400	chr4A	28272559	28273154	595	False	771.000000	771	90.772000	640	1207	1	chr4A.!!$F1	567
4	TraesCS7D01G111400	chr2B	621182168	621184645	2477	False	1819.500000	2693	93.419500	602	3410	2	chr2B.!!$F2	2808
5	TraesCS7D01G111400	chr4B	550673906	550675539	1633	False	2194.000000	2194	91.031000	1772	3396	1	chr4B.!!$F2	1624
6	TraesCS7D01G111400	chr4B	16551846	16553378	1532	False	2154.000000	2154	92.133000	1772	3297	1	chr4B.!!$F1	1525
7	TraesCS7D01G111400	chr7A	228675529	228677161	1632	True	2165.000000	2165	90.737000	1772	3394	1	chr7A.!!$R2	1622
8	TraesCS7D01G111400	chr3B	511029826	511031358	1532	True	2148.000000	2148	92.068000	1772	3297	1	chr3B.!!$R2	1525
9	TraesCS7D01G111400	chr3B	395846146	395846864	718	True	942.000000	942	91.136000	523	1207	1	chr3B.!!$R1	684
10	TraesCS7D01G111400	chr2A	642959700	642962447	2747	True	1600.000000	2139	94.192500	473	3410	2	chr2A.!!$R1	2937
11	TraesCS7D01G111400	chr1A	121879762	121882113	2351	True	1433.500000	1938	92.647500	512	2883	2	chr1A.!!$R1	2371
12	TraesCS7D01G111400	chr7B	725790700	725791567	867	False	1378.000000	1378	95.293000	2540	3410	1	chr7B.!!$F2	870
13	TraesCS7D01G111400	chrUn	391724490	391725085	595	False	743.000000	743	89.967000	640	1207	1	chrUn.!!$F1	567
14	TraesCS7D01G111400	chr3D	598714498	598715057	559	False	276.500000	279	89.414500	1	220	2	chr3D.!!$F1	219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
137	138	0.183731	GCAAAATCGAGGAGGGGGAT	59.816	55.0	3.85	F
170	172	0.250510	TGCGGGCTGTGTCATTTGTA	60.251	50.0	2.41	F
223	225	0.984230	ATCGGGGACAAGCTTTCTCA	59.016	50.0	3.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1737	1891	3.096852	TGTGTCATGATAGAAGGACGGT	58.903	45.455	33.04	4.83	R
2116	2289	3.981211	AGCAAAACATAGCACACAAAGG	58.019	40.909	0.00	3.11	R
2636	2818	5.242434	ACGCTATACCACTCAAACAAATGA	58.758	37.500	0.00	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	1.139058	AGAAAGGCGGCGATATGAAGT	59.861	47.619	12.98	0.00	0.00	3.01
48	49	0.464036	AAGGCGGCGATATGAAGTGA	59.536	50.000	12.98	0.00	0.00	3.41
56	57	3.198068	GCGATATGAAGTGAAGAAGGCA	58.802	45.455	0.00	0.00	0.00	4.75
106	107	2.753701	CCGGGGGTGACATTGTCA	59.246	61.111	15.41	15.41	40.50	3.58
122	123	2.735478	CACCGTAGCCGTCGCAAA	60.735	61.111	0.00	0.00	37.52	3.68
125	126	1.347221	CCGTAGCCGTCGCAAAATC	59.653	57.895	0.00	0.00	37.52	2.17
135	136	1.819632	CGCAAAATCGAGGAGGGGG	60.820	63.158	0.00	0.00	0.00	5.40
137	138	0.183731	GCAAAATCGAGGAGGGGGAT	59.816	55.000	0.00	0.00	0.00	3.85
138	139	1.972872	CAAAATCGAGGAGGGGGATG	58.027	55.000	0.00	0.00	0.00	3.51
170	172	0.250510	TGCGGGCTGTGTCATTTGTA	60.251	50.000	0.00	0.00	0.00	2.41
178	180	5.417580	GGGCTGTGTCATTTGTAGGATTAAA	59.582	40.000	0.00	0.00	0.00	1.52
188	190	2.044758	GTAGGATTAAAGCGAGGGGGA	58.955	52.381	0.00	0.00	0.00	4.81
191	193	2.158608	AGGATTAAAGCGAGGGGGATTG	60.159	50.000	0.00	0.00	0.00	2.67
206	208	4.381932	GGGGGATTGTCACAAATTGTCATC	60.382	45.833	0.00	0.00	0.00	2.92
208	210	4.414852	GGATTGTCACAAATTGTCATCGG	58.585	43.478	0.00	0.00	0.00	4.18
220	222	1.087501	GTCATCGGGGACAAGCTTTC	58.912	55.000	0.00	0.00	37.73	2.62
223	225	0.984230	ATCGGGGACAAGCTTTCTCA	59.016	50.000	0.00	0.00	0.00	3.27
228	230	1.000955	GGGACAAGCTTTCTCAGACGA	59.999	52.381	0.00	0.00	0.00	4.20
231	233	3.553096	GGACAAGCTTTCTCAGACGAAGA	60.553	47.826	0.00	0.00	0.00	2.87
233	235	3.068873	ACAAGCTTTCTCAGACGAAGAGT	59.931	43.478	0.00	0.00	34.73	3.24
234	236	4.278669	ACAAGCTTTCTCAGACGAAGAGTA	59.721	41.667	0.00	0.00	34.73	2.59
237	239	6.952773	AGCTTTCTCAGACGAAGAGTATAT	57.047	37.500	0.00	0.00	34.73	0.86
239	241	8.630054	AGCTTTCTCAGACGAAGAGTATATAT	57.370	34.615	0.00	0.00	34.73	0.86
240	242	9.073475	AGCTTTCTCAGACGAAGAGTATATATT	57.927	33.333	0.00	0.00	34.73	1.28
360	362	7.815840	TCCATACATTGAAGAAAAGTTGTGA	57.184	32.000	0.00	0.00	0.00	3.58
361	363	7.874940	TCCATACATTGAAGAAAAGTTGTGAG	58.125	34.615	0.00	0.00	0.00	3.51
362	364	6.583806	CCATACATTGAAGAAAAGTTGTGAGC	59.416	38.462	0.00	0.00	0.00	4.26
363	365	5.581126	ACATTGAAGAAAAGTTGTGAGCA	57.419	34.783	0.00	0.00	0.00	4.26
364	366	6.152932	ACATTGAAGAAAAGTTGTGAGCAT	57.847	33.333	0.00	0.00	0.00	3.79
365	367	6.576185	ACATTGAAGAAAAGTTGTGAGCATT	58.424	32.000	0.00	0.00	0.00	3.56
366	368	7.043565	ACATTGAAGAAAAGTTGTGAGCATTT	58.956	30.769	0.00	0.00	0.00	2.32
367	369	6.890663	TTGAAGAAAAGTTGTGAGCATTTG	57.109	33.333	0.00	0.00	0.00	2.32
368	370	6.206395	TGAAGAAAAGTTGTGAGCATTTGA	57.794	33.333	0.00	0.00	0.00	2.69
369	371	6.629128	TGAAGAAAAGTTGTGAGCATTTGAA	58.371	32.000	0.00	0.00	0.00	2.69
370	372	7.095910	TGAAGAAAAGTTGTGAGCATTTGAAA	58.904	30.769	0.00	0.00	0.00	2.69
371	373	7.601886	TGAAGAAAAGTTGTGAGCATTTGAAAA	59.398	29.630	0.00	0.00	0.00	2.29
372	374	7.903995	AGAAAAGTTGTGAGCATTTGAAAAA	57.096	28.000	0.00	0.00	0.00	1.94
373	375	8.496707	AGAAAAGTTGTGAGCATTTGAAAAAT	57.503	26.923	0.00	0.00	0.00	1.82
374	376	9.598517	AGAAAAGTTGTGAGCATTTGAAAAATA	57.401	25.926	0.00	0.00	0.00	1.40
378	380	9.545105	AAGTTGTGAGCATTTGAAAAATATTCA	57.455	25.926	0.00	0.00	0.00	2.57
379	381	8.981647	AGTTGTGAGCATTTGAAAAATATTCAC	58.018	29.630	15.12	15.12	34.54	3.18
380	382	7.887996	TGTGAGCATTTGAAAAATATTCACC	57.112	32.000	17.26	7.77	33.37	4.02
381	383	7.440198	TGTGAGCATTTGAAAAATATTCACCA	58.560	30.769	17.26	9.24	33.37	4.17
382	384	7.384660	TGTGAGCATTTGAAAAATATTCACCAC	59.615	33.333	17.26	0.00	33.37	4.16
383	385	7.599998	GTGAGCATTTGAAAAATATTCACCACT	59.400	33.333	12.89	0.00	0.00	4.00
384	386	8.149647	TGAGCATTTGAAAAATATTCACCACTT	58.850	29.630	0.00	0.00	0.00	3.16
385	387	9.638239	GAGCATTTGAAAAATATTCACCACTTA	57.362	29.630	0.00	0.00	0.00	2.24
404	406	8.443953	CCACTTATTGGGAAAATGTTGAAAAA	57.556	30.769	0.00	0.00	42.54	1.94
434	436	5.845391	AAAAACCAAATCTGGACGAGAAA	57.155	34.783	0.00	0.00	46.92	2.52
435	437	5.845391	AAAACCAAATCTGGACGAGAAAA	57.155	34.783	0.00	0.00	46.92	2.29
436	438	5.845391	AAACCAAATCTGGACGAGAAAAA	57.155	34.783	0.00	0.00	46.92	1.94
437	439	6.405278	AAACCAAATCTGGACGAGAAAAAT	57.595	33.333	0.00	0.00	46.92	1.82
438	440	7.519032	AAACCAAATCTGGACGAGAAAAATA	57.481	32.000	0.00	0.00	46.92	1.40
439	441	6.743575	ACCAAATCTGGACGAGAAAAATAG	57.256	37.500	0.00	0.00	46.92	1.73
440	442	6.472887	ACCAAATCTGGACGAGAAAAATAGA	58.527	36.000	0.00	0.00	46.92	1.98
441	443	6.940298	ACCAAATCTGGACGAGAAAAATAGAA	59.060	34.615	0.00	0.00	46.92	2.10
442	444	7.119846	ACCAAATCTGGACGAGAAAAATAGAAG	59.880	37.037	0.00	0.00	46.92	2.85
443	445	7.334421	CCAAATCTGGACGAGAAAAATAGAAGA	59.666	37.037	0.00	0.00	46.92	2.87
444	446	7.835634	AATCTGGACGAGAAAAATAGAAGAC	57.164	36.000	0.00	0.00	33.12	3.01
445	447	5.721232	TCTGGACGAGAAAAATAGAAGACC	58.279	41.667	0.00	0.00	0.00	3.85
446	448	5.245301	TCTGGACGAGAAAAATAGAAGACCA	59.755	40.000	0.00	0.00	0.00	4.02
447	449	6.049955	TGGACGAGAAAAATAGAAGACCAT	57.950	37.500	0.00	0.00	0.00	3.55
448	450	7.123697	TCTGGACGAGAAAAATAGAAGACCATA	59.876	37.037	0.00	0.00	0.00	2.74
449	451	7.617225	TGGACGAGAAAAATAGAAGACCATAA	58.383	34.615	0.00	0.00	0.00	1.90
450	452	8.098286	TGGACGAGAAAAATAGAAGACCATAAA	58.902	33.333	0.00	0.00	0.00	1.40
451	453	8.943002	GGACGAGAAAAATAGAAGACCATAAAA	58.057	33.333	0.00	0.00	0.00	1.52
569	571	4.130857	TGGTCTACATCGCTTCAAAACAA	58.869	39.130	0.00	0.00	0.00	2.83
806	877	4.787280	CTCTGTCCGGCCCCTCCT	62.787	72.222	0.00	0.00	0.00	3.69
2223	2398	4.716003	GGTTTTCCACCGGGAGAG	57.284	61.111	6.32	0.00	46.01	3.20

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	100	1.410737	CGACGGCTACGGTGACAATG	61.411	60.000	0.00	0.00	46.48	2.82
100	101	1.153901	CGACGGCTACGGTGACAAT	60.154	57.895	0.00	0.00	46.48	2.71
101	102	2.256158	CGACGGCTACGGTGACAA	59.744	61.111	0.00	0.00	46.48	3.18
106	107	1.356527	GATTTTGCGACGGCTACGGT	61.357	55.000	0.00	0.00	46.48	4.83
111	112	2.100631	CCTCGATTTTGCGACGGCT	61.101	57.895	0.00	0.00	40.82	5.52
122	123	1.462238	CCCATCCCCCTCCTCGATT	60.462	63.158	0.00	0.00	0.00	3.34
164	166	4.461198	CCCCTCGCTTTAATCCTACAAAT	58.539	43.478	0.00	0.00	0.00	2.32
170	172	1.821088	ATCCCCCTCGCTTTAATCCT	58.179	50.000	0.00	0.00	0.00	3.24
178	180	1.488705	TTGTGACAATCCCCCTCGCT	61.489	55.000	0.00	0.00	0.00	4.93
188	190	3.193267	CCCCGATGACAATTTGTGACAAT	59.807	43.478	6.80	0.00	35.52	2.71
191	193	2.161609	GTCCCCGATGACAATTTGTGAC	59.838	50.000	6.80	2.74	35.29	3.67
206	208	0.321671	TCTGAGAAAGCTTGTCCCCG	59.678	55.000	0.00	0.00	0.00	5.73
208	210	1.000955	TCGTCTGAGAAAGCTTGTCCC	59.999	52.381	0.00	0.00	0.00	4.46
334	336	9.513906	TCACAACTTTTCTTCAATGTATGGATA	57.486	29.630	0.00	0.00	0.00	2.59
335	337	8.408043	TCACAACTTTTCTTCAATGTATGGAT	57.592	30.769	0.00	0.00	0.00	3.41
336	338	7.522073	GCTCACAACTTTTCTTCAATGTATGGA	60.522	37.037	0.00	0.00	0.00	3.41
337	339	6.583806	GCTCACAACTTTTCTTCAATGTATGG	59.416	38.462	0.00	0.00	0.00	2.74
338	340	7.140705	TGCTCACAACTTTTCTTCAATGTATG	58.859	34.615	0.00	0.00	0.00	2.39
339	341	7.275888	TGCTCACAACTTTTCTTCAATGTAT	57.724	32.000	0.00	0.00	0.00	2.29
340	342	6.691754	TGCTCACAACTTTTCTTCAATGTA	57.308	33.333	0.00	0.00	0.00	2.29
341	343	5.581126	TGCTCACAACTTTTCTTCAATGT	57.419	34.783	0.00	0.00	0.00	2.71
342	344	7.223193	TCAAATGCTCACAACTTTTCTTCAATG	59.777	33.333	0.00	0.00	0.00	2.82
343	345	7.267128	TCAAATGCTCACAACTTTTCTTCAAT	58.733	30.769	0.00	0.00	0.00	2.57
344	346	6.629128	TCAAATGCTCACAACTTTTCTTCAA	58.371	32.000	0.00	0.00	0.00	2.69
345	347	6.206395	TCAAATGCTCACAACTTTTCTTCA	57.794	33.333	0.00	0.00	0.00	3.02
346	348	7.524294	TTTCAAATGCTCACAACTTTTCTTC	57.476	32.000	0.00	0.00	0.00	2.87
347	349	7.903995	TTTTCAAATGCTCACAACTTTTCTT	57.096	28.000	0.00	0.00	0.00	2.52
348	350	7.903995	TTTTTCAAATGCTCACAACTTTTCT	57.096	28.000	0.00	0.00	0.00	2.52
352	354	9.545105	TGAATATTTTTCAAATGCTCACAACTT	57.455	25.926	0.00	0.00	0.00	2.66
353	355	8.981647	GTGAATATTTTTCAAATGCTCACAACT	58.018	29.630	14.53	0.00	32.76	3.16
354	356	8.223100	GGTGAATATTTTTCAAATGCTCACAAC	58.777	33.333	18.01	6.78	33.87	3.32
355	357	7.930325	TGGTGAATATTTTTCAAATGCTCACAA	59.070	29.630	18.01	10.47	33.87	3.33
356	358	7.384660	GTGGTGAATATTTTTCAAATGCTCACA	59.615	33.333	18.01	8.79	33.87	3.58
357	359	7.599998	AGTGGTGAATATTTTTCAAATGCTCAC	59.400	33.333	12.62	12.62	0.00	3.51
358	360	7.669427	AGTGGTGAATATTTTTCAAATGCTCA	58.331	30.769	0.00	0.00	0.00	4.26
359	361	8.538409	AAGTGGTGAATATTTTTCAAATGCTC	57.462	30.769	0.00	0.00	0.00	4.26
412	414	5.845391	TTTCTCGTCCAGATTTGGTTTTT	57.155	34.783	1.59	0.00	45.26	1.94
413	415	5.845391	TTTTCTCGTCCAGATTTGGTTTT	57.155	34.783	1.59	0.00	45.26	2.43
414	416	5.845391	TTTTTCTCGTCCAGATTTGGTTT	57.155	34.783	1.59	0.00	45.26	3.27
415	417	6.940298	TCTATTTTTCTCGTCCAGATTTGGTT	59.060	34.615	1.59	0.00	45.26	3.67
416	418	6.472887	TCTATTTTTCTCGTCCAGATTTGGT	58.527	36.000	1.59	0.00	45.26	3.67
417	419	6.985188	TCTATTTTTCTCGTCCAGATTTGG	57.015	37.500	0.00	0.00	46.49	3.28
418	420	8.171840	GTCTTCTATTTTTCTCGTCCAGATTTG	58.828	37.037	0.00	0.00	0.00	2.32
419	421	7.334671	GGTCTTCTATTTTTCTCGTCCAGATTT	59.665	37.037	0.00	0.00	0.00	2.17
420	422	6.819146	GGTCTTCTATTTTTCTCGTCCAGATT	59.181	38.462	0.00	0.00	0.00	2.40
421	423	6.070767	TGGTCTTCTATTTTTCTCGTCCAGAT	60.071	38.462	0.00	0.00	0.00	2.90
422	424	5.245301	TGGTCTTCTATTTTTCTCGTCCAGA	59.755	40.000	0.00	0.00	0.00	3.86
423	425	5.479306	TGGTCTTCTATTTTTCTCGTCCAG	58.521	41.667	0.00	0.00	0.00	3.86
424	426	5.477607	TGGTCTTCTATTTTTCTCGTCCA	57.522	39.130	0.00	0.00	0.00	4.02
425	427	8.488651	TTTATGGTCTTCTATTTTTCTCGTCC	57.511	34.615	0.00	0.00	0.00	4.79
461	463	9.990868	AGGGGTAGTAGATGATTATTTTGTTTT	57.009	29.630	0.00	0.00	0.00	2.43
471	473	9.684702	TTCCTTTTATAGGGGTAGTAGATGATT	57.315	33.333	0.00	0.00	44.86	2.57
472	474	9.327731	CTTCCTTTTATAGGGGTAGTAGATGAT	57.672	37.037	0.00	0.00	44.86	2.45
473	475	8.517047	TCTTCCTTTTATAGGGGTAGTAGATGA	58.483	37.037	0.00	0.00	44.86	2.92
474	476	8.722622	TCTTCCTTTTATAGGGGTAGTAGATG	57.277	38.462	0.00	0.00	44.86	2.90
790	861	4.779733	GAGGAGGGGCCGGACAGA	62.780	72.222	11.00	0.00	43.43	3.41
1737	1891	3.096852	TGTGTCATGATAGAAGGACGGT	58.903	45.455	0.00	0.00	33.04	4.83
2116	2289	3.981211	AGCAAAACATAGCACACAAAGG	58.019	40.909	0.00	0.00	0.00	3.11
2636	2818	5.242434	ACGCTATACCACTCAAACAAATGA	58.758	37.500	0.00	0.00	0.00	2.57
3045	3232	7.878621	ATAAACCTTGATGGAGATGGAGATA	57.121	36.000	0.00	0.00	39.71	1.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.