Multiple sequence alignment - TraesCS7D01G111200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G111200 chr7D 100.000 4191 0 0 1 4191 66952275 66956465 0.000000e+00 7740.0
1 TraesCS7D01G111200 chr7D 100.000 2790 0 0 4544 7333 66956818 66959607 0.000000e+00 5153.0
2 TraesCS7D01G111200 chr7D 94.970 835 38 4 6502 7333 624302906 624302073 0.000000e+00 1306.0
3 TraesCS7D01G111200 chr7D 94.850 835 39 4 6502 7333 624275626 624274793 0.000000e+00 1301.0
4 TraesCS7D01G111200 chr7D 94.844 834 40 3 6501 7333 624090678 624089847 0.000000e+00 1299.0
5 TraesCS7D01G111200 chr7D 94.731 835 41 3 6501 7333 624418476 624417643 0.000000e+00 1295.0
6 TraesCS7D01G111200 chr7D 94.731 835 41 3 6501 7333 624660822 624659989 0.000000e+00 1295.0
7 TraesCS7D01G111200 chr7D 94.611 835 41 4 6502 7333 624317093 624316260 0.000000e+00 1290.0
8 TraesCS7D01G111200 chr7D 94.378 836 41 6 6502 7333 624078040 624077207 0.000000e+00 1279.0
9 TraesCS7D01G111200 chr7D 94.125 834 46 3 6501 7333 624329699 624328868 0.000000e+00 1266.0
10 TraesCS7D01G111200 chr7D 76.215 391 63 22 5458 5830 153770946 153771324 5.850000e-41 180.0
11 TraesCS7D01G111200 chr7B 93.326 3656 156 32 1 3646 8981568 8985145 0.000000e+00 5319.0
12 TraesCS7D01G111200 chr7B 94.570 221 10 2 6113 6331 8987527 8987747 2.530000e-89 340.0
13 TraesCS7D01G111200 chr7B 78.327 263 44 10 5429 5681 529200990 529200731 2.740000e-34 158.0
14 TraesCS7D01G111200 chr7B 74.801 377 62 28 5475 5835 621315447 621315806 9.920000e-29 139.0
15 TraesCS7D01G111200 chr7A 90.214 3372 223 63 860 4191 73754051 73750747 0.000000e+00 4300.0
16 TraesCS7D01G111200 chr7A 89.238 892 73 8 1 878 73755687 73754805 0.000000e+00 1094.0
17 TraesCS7D01G111200 chr7A 83.865 564 80 8 4547 5107 73750683 73750128 1.810000e-145 527.0
18 TraesCS7D01G111200 chr7A 83.964 555 64 13 4989 5526 73750124 73749578 6.560000e-140 508.0
19 TraesCS7D01G111200 chr7A 95.556 315 13 1 6113 6426 73749123 73748809 3.050000e-138 503.0
20 TraesCS7D01G111200 chr7A 77.810 694 102 41 5146 5802 185059845 185059167 1.490000e-101 381.0
21 TraesCS7D01G111200 chr7A 91.935 186 13 2 5930 6114 73749342 73749158 7.300000e-65 259.0
22 TraesCS7D01G111200 chr7A 92.135 89 7 0 2450 2538 505687213 505687301 7.720000e-25 126.0
23 TraesCS7D01G111200 chrUn 94.005 834 47 3 6502 7333 321681739 321680907 0.000000e+00 1260.0
24 TraesCS7D01G111200 chr2B 86.824 721 77 6 2535 3251 8771581 8770875 0.000000e+00 789.0
25 TraesCS7D01G111200 chr2B 86.092 719 82 5 2535 3250 4504544 4505247 0.000000e+00 758.0
26 TraesCS7D01G111200 chr2B 84.627 644 73 13 1406 2048 8772626 8772008 1.050000e-172 617.0
27 TraesCS7D01G111200 chr2B 89.520 458 43 4 363 819 91616146 91615693 6.380000e-160 575.0
28 TraesCS7D01G111200 chr2B 81.535 417 52 15 886 1294 8773083 8772684 3.300000e-83 320.0
29 TraesCS7D01G111200 chr2B 84.591 318 39 6 983 1294 4502940 4503253 2.570000e-79 307.0
30 TraesCS7D01G111200 chr2B 81.586 391 48 12 6113 6499 4514799 4515169 1.200000e-77 302.0
31 TraesCS7D01G111200 chr2B 81.266 395 48 12 6113 6505 8766629 8766259 5.560000e-76 296.0
32 TraesCS7D01G111200 chr2B 90.278 144 11 2 2090 2233 8771940 8771800 1.260000e-42 185.0
33 TraesCS7D01G111200 chr2B 85.065 154 9 5 2303 2456 4504404 4504543 2.130000e-30 145.0
34 TraesCS7D01G111200 chr2B 84.892 139 10 6 2270 2408 8771731 8771604 5.970000e-26 130.0
35 TraesCS7D01G111200 chr2D 87.391 690 78 4 2567 3251 7878266 7878951 0.000000e+00 784.0
36 TraesCS7D01G111200 chr2D 83.931 641 86 9 1406 2045 7877173 7877797 1.360000e-166 597.0
37 TraesCS7D01G111200 chr2D 89.738 458 43 3 363 819 638731274 638731728 3.810000e-162 582.0
38 TraesCS7D01G111200 chr2D 83.484 442 43 16 865 1294 7876688 7877111 1.150000e-102 385.0
39 TraesCS7D01G111200 chr2D 82.609 391 44 13 6113 6499 7889499 7889869 2.550000e-84 324.0
40 TraesCS7D01G111200 chr2D 85.027 187 13 7 2270 2456 7878078 7878249 7.560000e-40 176.0
41 TraesCS7D01G111200 chr2D 87.755 147 15 2 2087 2233 7877861 7878004 1.270000e-37 169.0
42 TraesCS7D01G111200 chr5B 89.956 458 42 3 363 819 645915619 645915165 8.200000e-164 588.0
43 TraesCS7D01G111200 chr5A 89.520 458 44 3 363 819 41925287 41924833 1.770000e-160 577.0
44 TraesCS7D01G111200 chr5A 89.301 458 47 2 363 819 601252613 601253069 2.290000e-159 573.0
45 TraesCS7D01G111200 chr3D 89.520 458 44 3 363 819 16312278 16312732 1.770000e-160 577.0
46 TraesCS7D01G111200 chr3D 77.306 542 89 20 1502 2041 418786515 418786006 9.310000e-74 289.0
47 TraesCS7D01G111200 chr3D 76.398 483 90 22 5369 5835 16048039 16048513 9.510000e-59 239.0
48 TraesCS7D01G111200 chr3D 80.597 201 23 14 5313 5502 78012092 78011897 2.760000e-29 141.0
49 TraesCS7D01G111200 chr3D 92.135 89 6 1 2450 2537 477907355 477907443 2.780000e-24 124.0
50 TraesCS7D01G111200 chr2A 89.800 451 44 1 363 813 670683515 670683963 1.770000e-160 577.0
51 TraesCS7D01G111200 chr2A 79.585 289 41 15 5140 5413 23890463 23890178 2.700000e-44 191.0
52 TraesCS7D01G111200 chr2A 78.788 99 14 7 3379 3472 513262447 513262351 7.950000e-05 60.2
53 TraesCS7D01G111200 chr3A 74.752 606 119 21 1438 2041 532315852 532316425 2.640000e-59 241.0
54 TraesCS7D01G111200 chr3A 77.322 366 59 18 5482 5839 576270861 576270512 2.090000e-45 195.0
55 TraesCS7D01G111200 chr3A 100.000 28 0 0 2609 2636 9844475 9844448 1.300000e-02 52.8
56 TraesCS7D01G111200 chr4B 79.027 329 47 18 5129 5440 184155281 184155604 9.640000e-49 206.0
57 TraesCS7D01G111200 chr4B 96.296 81 2 1 2459 2538 41531496 41531416 1.660000e-26 132.0
58 TraesCS7D01G111200 chr5D 89.216 102 9 2 2441 2540 281024888 281024787 7.720000e-25 126.0
59 TraesCS7D01G111200 chr1D 91.398 93 6 2 2447 2537 101285240 101285148 7.720000e-25 126.0
60 TraesCS7D01G111200 chr1D 85.039 127 13 5 5465 5589 405800194 405800316 2.780000e-24 124.0
61 TraesCS7D01G111200 chr1D 88.660 97 9 1 4957 5051 18817752 18817656 4.650000e-22 117.0
62 TraesCS7D01G111200 chr1D 81.818 77 11 3 3335 3410 57152110 57152036 2.210000e-05 62.1
63 TraesCS7D01G111200 chr6D 88.350 103 12 0 2435 2537 451854816 451854918 2.780000e-24 124.0
64 TraesCS7D01G111200 chr3B 92.135 89 6 1 2450 2537 637089693 637089781 2.780000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G111200 chr7D 66952275 66959607 7332 False 6446.500000 7740 100.000000 1 7333 2 chr7D.!!$F2 7332
1 TraesCS7D01G111200 chr7D 624302073 624302906 833 True 1306.000000 1306 94.970000 6502 7333 1 chr7D.!!$R4 831
2 TraesCS7D01G111200 chr7D 624274793 624275626 833 True 1301.000000 1301 94.850000 6502 7333 1 chr7D.!!$R3 831
3 TraesCS7D01G111200 chr7D 624089847 624090678 831 True 1299.000000 1299 94.844000 6501 7333 1 chr7D.!!$R2 832
4 TraesCS7D01G111200 chr7D 624417643 624418476 833 True 1295.000000 1295 94.731000 6501 7333 1 chr7D.!!$R7 832
5 TraesCS7D01G111200 chr7D 624659989 624660822 833 True 1295.000000 1295 94.731000 6501 7333 1 chr7D.!!$R8 832
6 TraesCS7D01G111200 chr7D 624316260 624317093 833 True 1290.000000 1290 94.611000 6502 7333 1 chr7D.!!$R5 831
7 TraesCS7D01G111200 chr7D 624077207 624078040 833 True 1279.000000 1279 94.378000 6502 7333 1 chr7D.!!$R1 831
8 TraesCS7D01G111200 chr7D 624328868 624329699 831 True 1266.000000 1266 94.125000 6501 7333 1 chr7D.!!$R6 832
9 TraesCS7D01G111200 chr7B 8981568 8987747 6179 False 2829.500000 5319 93.948000 1 6331 2 chr7B.!!$F2 6330
10 TraesCS7D01G111200 chr7A 73748809 73755687 6878 True 1198.500000 4300 89.128667 1 6426 6 chr7A.!!$R2 6425
11 TraesCS7D01G111200 chr7A 185059167 185059845 678 True 381.000000 381 77.810000 5146 5802 1 chr7A.!!$R1 656
12 TraesCS7D01G111200 chrUn 321680907 321681739 832 True 1260.000000 1260 94.005000 6502 7333 1 chrUn.!!$R1 831
13 TraesCS7D01G111200 chr2B 8770875 8773083 2208 True 408.200000 789 85.631200 886 3251 5 chr2B.!!$R3 2365
14 TraesCS7D01G111200 chr2B 4502940 4505247 2307 False 403.333333 758 85.249333 983 3250 3 chr2B.!!$F2 2267
15 TraesCS7D01G111200 chr2D 7876688 7878951 2263 False 422.200000 784 85.517600 865 3251 5 chr2D.!!$F3 2386
16 TraesCS7D01G111200 chr3D 418786006 418786515 509 True 289.000000 289 77.306000 1502 2041 1 chr3D.!!$R2 539
17 TraesCS7D01G111200 chr3A 532315852 532316425 573 False 241.000000 241 74.752000 1438 2041 1 chr3A.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 541 0.390603 CGACCGGTCCATGCAACTTA 60.391 55.0 28.52 0.00 0.00 2.24 F
1998 2805 0.037303 TCGTCCACCGGAGTCTTAGT 59.963 55.0 9.46 0.00 37.11 2.24 F
3862 5042 4.021544 ACAACAGAAAACCACAAAAGAGCA 60.022 37.5 0.00 0.00 0.00 4.26 F
3926 5106 0.038744 ACTAGCTTTGCATGTGGGCT 59.961 50.0 0.00 2.42 37.08 5.19 F
5864 8769 0.033109 AGGGGGAGCCAAGCAATTAC 60.033 55.0 0.00 0.00 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 2974 0.178975 TCTGTGGTTCCCGGCAAATT 60.179 50.0 0.00 0.00 0.00 1.82 R
3881 5061 0.329596 AGCCCAGATCAAGGTTCACC 59.670 55.0 0.00 0.00 0.00 4.02 R
5845 8750 0.033109 GTAATTGCTTGGCTCCCCCT 60.033 55.0 0.00 0.00 0.00 4.79 R
5877 8782 0.895530 TATGGGGAATCGATCTCGCC 59.104 55.0 24.08 24.08 44.22 5.54 R
7293 10243 0.489567 AACAGAGAGAGGGGAGGTGT 59.510 55.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.860088 TGGAGAGACTATGAATTAATTCGATCA 58.140 33.333 20.45 6.83 39.62 2.92
109 122 3.433615 CGCAACAGAAGTTAGGAGAAAGG 59.566 47.826 0.00 0.00 35.85 3.11
174 187 2.084546 GAAACATATCCCGCATAGGCC 58.915 52.381 0.00 0.00 39.21 5.19
291 305 9.747898 TTTAGTTGATGTGGTTATGAAATACCT 57.252 29.630 0.00 0.00 0.00 3.08
324 339 2.297033 ACACAACTATTTGCCTTGCCAG 59.703 45.455 0.00 0.00 36.00 4.85
388 403 5.997746 CCTCCACTTGTAATGAACTTTGAGA 59.002 40.000 0.00 0.00 0.00 3.27
392 407 7.338196 TCCACTTGTAATGAACTTTGAGAACAA 59.662 33.333 0.00 0.00 0.00 2.83
411 426 7.264947 AGAACAATTTCAACCAACAAGTAAGG 58.735 34.615 0.00 0.00 33.72 2.69
526 541 0.390603 CGACCGGTCCATGCAACTTA 60.391 55.000 28.52 0.00 0.00 2.24
593 608 6.212388 AGAGAGATTTACAACACACTCTCCAT 59.788 38.462 15.28 0.00 46.26 3.41
608 623 2.026729 TCTCCATATTGCCAACCGACAA 60.027 45.455 0.00 0.00 0.00 3.18
632 647 5.120399 CAGTAACAACAACCACAAGAGGTA 58.880 41.667 0.00 0.00 42.25 3.08
639 654 6.039382 ACAACAACCACAAGAGGTAAGATTTC 59.961 38.462 0.00 0.00 42.25 2.17
678 693 2.064762 CAGCTTCTGTCTCCTTTCGTG 58.935 52.381 0.00 0.00 0.00 4.35
752 767 3.383825 ACAAGTAGACACACGAGTTCCTT 59.616 43.478 0.00 0.00 0.00 3.36
780 795 5.078949 TCCCTCAAAATTTCAGCTCAATCA 58.921 37.500 0.00 0.00 0.00 2.57
803 818 1.201414 CACGATTTGCCTACCCAAACC 59.799 52.381 0.00 0.00 37.51 3.27
806 821 1.890489 GATTTGCCTACCCAAACCGTT 59.110 47.619 0.00 0.00 37.51 4.44
816 831 0.533308 CCAAACCGTTCGTCTCCCAA 60.533 55.000 0.00 0.00 0.00 4.12
817 832 1.301423 CAAACCGTTCGTCTCCCAAA 58.699 50.000 0.00 0.00 0.00 3.28
818 833 1.671845 CAAACCGTTCGTCTCCCAAAA 59.328 47.619 0.00 0.00 0.00 2.44
819 834 2.265589 AACCGTTCGTCTCCCAAAAT 57.734 45.000 0.00 0.00 0.00 1.82
820 835 2.265589 ACCGTTCGTCTCCCAAAATT 57.734 45.000 0.00 0.00 0.00 1.82
821 836 1.877443 ACCGTTCGTCTCCCAAAATTG 59.123 47.619 0.00 0.00 0.00 2.32
822 837 1.877443 CCGTTCGTCTCCCAAAATTGT 59.123 47.619 0.00 0.00 0.00 2.71
823 838 3.068560 CCGTTCGTCTCCCAAAATTGTA 58.931 45.455 0.00 0.00 0.00 2.41
824 839 3.124636 CCGTTCGTCTCCCAAAATTGTAG 59.875 47.826 0.00 0.00 0.00 2.74
929 1728 0.616395 TGCCATCACCTTCGGGAGTA 60.616 55.000 0.00 0.00 38.77 2.59
1023 1824 2.360165 GCATAGGGAAGCAACAATGGAG 59.640 50.000 0.00 0.00 0.00 3.86
1046 1847 1.276622 GTCAGTGGTAGTCCATGGGT 58.723 55.000 13.02 1.93 46.20 4.51
1057 1858 0.400213 TCCATGGGTGTCAGTTCCAC 59.600 55.000 13.02 0.00 32.90 4.02
1071 1872 0.179067 TTCCACGAAACCGACTGCTT 60.179 50.000 0.00 0.00 0.00 3.91
1094 1895 2.076100 GATCCGCATGTCAACAGAACA 58.924 47.619 0.00 0.00 0.00 3.18
1200 2007 2.264794 GTCGTCACCATCGGCCTT 59.735 61.111 0.00 0.00 0.00 4.35
1209 2016 4.778143 ATCGGCCTTGACACGCCC 62.778 66.667 0.00 0.00 42.53 6.13
1552 2359 4.477975 ACTACGTCGCCTCGCTGC 62.478 66.667 0.00 0.00 0.00 5.25
1701 2508 2.008543 GCGCTTCTCATGATGTCCACA 61.009 52.381 0.00 0.00 0.00 4.17
1709 2516 3.490759 GATGTCCACACGCAGCGG 61.491 66.667 21.15 10.75 0.00 5.52
1998 2805 0.037303 TCGTCCACCGGAGTCTTAGT 59.963 55.000 9.46 0.00 37.11 2.24
2106 2955 8.893563 AATTATTATTTTTCCCCACAGACTGA 57.106 30.769 10.08 0.00 0.00 3.41
2122 2972 8.624776 CCACAGACTGATAACTTTCTTTCTTTT 58.375 33.333 10.08 0.00 0.00 2.27
2637 3731 8.718102 ACCACTATGAACAGACATATGTTAAC 57.282 34.615 10.30 0.00 43.32 2.01
2827 3921 6.633500 AGATTGGTCTGATTTTCACGAAAA 57.367 33.333 7.37 7.37 37.72 2.29
2828 3922 7.038154 AGATTGGTCTGATTTTCACGAAAAA 57.962 32.000 8.88 0.00 37.28 1.94
3006 4105 4.083802 GGAACTTCAATCTTTCGGTGTCTG 60.084 45.833 0.00 0.00 0.00 3.51
3138 4237 4.222124 GGTACTGAACCCATGATCTTGT 57.778 45.455 7.73 0.00 43.16 3.16
3225 4324 6.983890 ACTTTTGTTAAACACAATCATCCACC 59.016 34.615 0.00 0.00 45.17 4.61
3268 4367 6.890293 AGATATCTTAAACTGTGAAGGGGTC 58.110 40.000 0.00 1.10 0.00 4.46
3499 4601 9.853555 CATATAATTTTGACAAAAGCCAGTGTA 57.146 29.630 17.73 5.66 33.22 2.90
3732 4896 9.508642 AAAGAACCAAAACAAAACTGGAAATAA 57.491 25.926 0.00 0.00 34.16 1.40
3772 4948 9.261180 GATAACCAGAAAAAGAAAAGGGAAAAG 57.739 33.333 0.00 0.00 0.00 2.27
3831 5011 4.608948 AACCAACACAGAAAACCAAACA 57.391 36.364 0.00 0.00 0.00 2.83
3858 5038 4.565022 ACCACAACAGAAAACCACAAAAG 58.435 39.130 0.00 0.00 0.00 2.27
3862 5042 4.021544 ACAACAGAAAACCACAAAAGAGCA 60.022 37.500 0.00 0.00 0.00 4.26
3866 5046 5.994668 ACAGAAAACCACAAAAGAGCAAAAA 59.005 32.000 0.00 0.00 0.00 1.94
3881 5061 3.557207 AAAAAGCAGAAGCAGCACG 57.443 47.368 0.00 0.00 45.49 5.34
3904 5084 2.515523 CCTTGATCTGGGCTGGCG 60.516 66.667 0.00 0.00 0.00 5.69
3926 5106 0.038744 ACTAGCTTTGCATGTGGGCT 59.961 50.000 0.00 2.42 37.08 5.19
3952 5132 3.673956 ATCCATTTGACGCCCGCGA 62.674 57.895 17.16 0.00 42.83 5.87
3964 5144 1.579932 CCCGCGAGCGTCATATAGT 59.420 57.895 8.23 0.00 37.81 2.12
3991 5171 7.398834 GAAGGATTCACTGACAAATTGTTTG 57.601 36.000 0.00 0.00 46.62 2.93
4019 5199 8.090250 TGCGTATAATAAGCAAATTAACGGAT 57.910 30.769 17.06 0.00 40.11 4.18
4033 5213 7.996098 AATTAACGGATATTATTCAGGTGGG 57.004 36.000 0.00 0.00 0.00 4.61
4071 5251 4.762825 CCGAACTGTCCGGTTTGA 57.237 55.556 0.00 0.00 41.91 2.69
4117 6782 3.371285 GGTTTCTGATCTTGCTAACCGAC 59.629 47.826 0.00 0.00 0.00 4.79
4171 6836 3.486383 GGTCCACTGAGATTTTGGTTCA 58.514 45.455 0.00 0.00 0.00 3.18
4178 6843 3.817084 CTGAGATTTTGGTTCAGTGCTCA 59.183 43.478 0.00 0.00 34.92 4.26
4185 6850 2.833794 TGGTTCAGTGCTCAGTTACAC 58.166 47.619 0.00 0.00 37.05 2.90
4186 6851 2.169561 TGGTTCAGTGCTCAGTTACACA 59.830 45.455 0.00 0.00 39.30 3.72
4188 6853 2.526304 TCAGTGCTCAGTTACACACC 57.474 50.000 0.00 0.00 39.30 4.16
4189 6854 1.139989 CAGTGCTCAGTTACACACCG 58.860 55.000 0.00 0.00 39.30 4.94
4618 7286 3.245016 TGCATAGCATAAAGGATGGGGAG 60.245 47.826 0.00 0.00 35.91 4.30
4628 7296 0.990818 GGATGGGGAGGAAGGAGCTT 60.991 60.000 0.00 0.00 0.00 3.74
4662 7330 2.280797 TCGCAGGTTGCTGTCCAC 60.281 61.111 0.00 0.00 42.25 4.02
4667 7335 1.672356 AGGTTGCTGTCCACGATGC 60.672 57.895 0.00 0.00 0.00 3.91
4676 7344 1.153765 TCCACGATGCTTGAGCGAG 60.154 57.895 0.00 0.00 45.83 5.03
4679 7347 2.185350 CGATGCTTGAGCGAGGGT 59.815 61.111 0.00 0.00 45.83 4.34
4686 7354 1.178276 CTTGAGCGAGGGTAGTCACT 58.822 55.000 0.00 0.00 0.00 3.41
4689 7357 1.595993 GAGCGAGGGTAGTCACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
4694 7362 1.376037 GGGTAGTCACTGCAGCCAC 60.376 63.158 15.27 10.72 0.00 5.01
4707 7375 4.899239 GCCACGAGGGAGCCATCG 62.899 72.222 20.42 20.42 44.36 3.84
4716 7384 1.377202 GGAGCCATCGCCAAAGTCA 60.377 57.895 0.00 0.00 34.57 3.41
4718 7386 0.379669 GAGCCATCGCCAAAGTCATG 59.620 55.000 0.00 0.00 34.57 3.07
4728 7396 0.457166 CAAAGTCATGTGGGCGCATG 60.457 55.000 10.83 4.11 45.48 4.06
4732 7400 4.722008 CATGTGGGCGCATGAATG 57.278 55.556 10.83 8.09 46.65 2.67
4739 7407 2.321060 GCGCATGAATGTCGACGG 59.679 61.111 11.62 0.00 32.02 4.79
4742 7410 3.005898 CATGAATGTCGACGGCCG 58.994 61.111 26.86 26.86 40.25 6.13
4762 7430 1.519455 CAGGGAGCCATCGTCGAAC 60.519 63.158 0.00 0.00 0.00 3.95
4764 7432 2.577059 GGAGCCATCGTCGAACCA 59.423 61.111 0.00 0.00 0.00 3.67
4769 7437 1.626654 GCCATCGTCGAACCAGTGTG 61.627 60.000 0.00 0.00 0.00 3.82
4786 7454 1.019278 GTGGGTGCATGAACGTCGAT 61.019 55.000 0.00 0.00 0.00 3.59
4788 7456 1.705337 GGGTGCATGAACGTCGATGG 61.705 60.000 9.90 0.00 0.00 3.51
4790 7458 1.079197 TGCATGAACGTCGATGGCT 60.079 52.632 9.90 0.00 0.00 4.75
4795 7463 2.031919 AACGTCGATGGCTGCCAA 59.968 55.556 27.24 6.43 36.95 4.52
4806 7474 3.207669 CTGCCAAGGAGCCATCGC 61.208 66.667 0.00 0.00 0.00 4.58
4814 7482 4.537433 GAGCCATCGCCGAAGCCT 62.537 66.667 8.64 0.00 34.57 4.58
4816 7484 2.203015 GCCATCGCCGAAGCCTTA 60.203 61.111 0.00 0.00 34.57 2.69
4837 7505 3.169924 GCGCATGAACGTCGACGA 61.170 61.111 41.52 22.18 43.02 4.20
4839 7507 2.774951 CGCATGAACGTCGACGACC 61.775 63.158 41.52 29.82 43.02 4.79
4853 7521 2.711924 GACCGCCGTCTACCGTAG 59.288 66.667 0.00 0.00 35.99 3.51
4871 7539 1.525175 AGGGACAACAAGGTGGGTAA 58.475 50.000 0.00 0.00 0.00 2.85
4872 7540 2.070573 AGGGACAACAAGGTGGGTAAT 58.929 47.619 0.00 0.00 0.00 1.89
4882 7550 1.074889 AGGTGGGTAATTGAAAGCGGT 59.925 47.619 0.00 0.00 0.00 5.68
4885 7553 2.295070 GTGGGTAATTGAAAGCGGTTGT 59.705 45.455 0.00 0.00 0.00 3.32
4886 7554 2.294791 TGGGTAATTGAAAGCGGTTGTG 59.705 45.455 0.00 0.00 0.00 3.33
4887 7555 2.295070 GGGTAATTGAAAGCGGTTGTGT 59.705 45.455 0.00 0.00 0.00 3.72
4894 7562 3.749735 AAGCGGTTGTGTTGCGTGC 62.750 57.895 0.00 0.00 0.00 5.34
4896 7564 2.352229 CGGTTGTGTTGCGTGCTG 60.352 61.111 0.00 0.00 0.00 4.41
4897 7565 2.798009 GGTTGTGTTGCGTGCTGT 59.202 55.556 0.00 0.00 0.00 4.40
4898 7566 1.586042 GGTTGTGTTGCGTGCTGTG 60.586 57.895 0.00 0.00 0.00 3.66
4899 7567 1.427419 GTTGTGTTGCGTGCTGTGA 59.573 52.632 0.00 0.00 0.00 3.58
4900 7568 0.179176 GTTGTGTTGCGTGCTGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
4901 7569 0.098552 TTGTGTTGCGTGCTGTGAAG 59.901 50.000 0.00 0.00 0.00 3.02
4902 7570 0.742635 TGTGTTGCGTGCTGTGAAGA 60.743 50.000 0.00 0.00 0.00 2.87
4903 7571 0.316196 GTGTTGCGTGCTGTGAAGAC 60.316 55.000 0.00 0.00 0.00 3.01
4916 7584 0.842030 TGAAGACTGTGGCCAGGGAT 60.842 55.000 5.11 0.00 43.36 3.85
4919 7587 4.415150 ACTGTGGCCAGGGATGCG 62.415 66.667 5.11 0.00 43.36 4.73
4920 7588 4.415150 CTGTGGCCAGGGATGCGT 62.415 66.667 5.11 0.00 34.90 5.24
4923 7591 3.410628 TGGCCAGGGATGCGTCAT 61.411 61.111 0.00 0.00 0.00 3.06
4928 7596 1.097547 CCAGGGATGCGTCATGGTTC 61.098 60.000 17.31 0.00 31.49 3.62
4929 7597 0.392863 CAGGGATGCGTCATGGTTCA 60.393 55.000 8.47 0.00 0.00 3.18
4934 7602 1.394917 GATGCGTCATGGTTCACACTC 59.605 52.381 0.00 0.00 0.00 3.51
4941 7609 0.544357 ATGGTTCACACTCGAGGGGA 60.544 55.000 20.91 10.70 0.00 4.81
4966 7635 1.604278 GCTCGGTGATTCCTATTTGGC 59.396 52.381 0.00 0.00 35.26 4.52
4975 7644 1.200519 TCCTATTTGGCGCTGTAGGT 58.799 50.000 7.64 0.00 36.08 3.08
4984 7653 0.462047 GCGCTGTAGGTGCCTGTTAT 60.462 55.000 0.00 0.00 44.87 1.89
4987 7656 3.728845 CGCTGTAGGTGCCTGTTATTAT 58.271 45.455 0.12 0.00 0.00 1.28
5025 7817 1.355971 CCTACACGCGCATTAGTTGT 58.644 50.000 5.73 3.33 0.00 3.32
5042 7834 1.388547 TGTGCTCGGCCCATTATTTC 58.611 50.000 0.00 0.00 0.00 2.17
5043 7835 0.307760 GTGCTCGGCCCATTATTTCG 59.692 55.000 0.00 0.00 0.00 3.46
5044 7836 0.107410 TGCTCGGCCCATTATTTCGT 60.107 50.000 0.00 0.00 0.00 3.85
5046 7838 1.002792 GCTCGGCCCATTATTTCGTTC 60.003 52.381 0.00 0.00 0.00 3.95
5047 7839 1.260561 CTCGGCCCATTATTTCGTTCG 59.739 52.381 0.00 0.00 0.00 3.95
5055 7848 2.604969 TTATTTCGTTCGCAACCAGC 57.395 45.000 0.00 0.00 40.87 4.85
5087 7880 3.001939 TCGTTGTTTTTCTTCTTCGCCTC 59.998 43.478 0.00 0.00 0.00 4.70
5088 7881 3.242608 CGTTGTTTTTCTTCTTCGCCTCA 60.243 43.478 0.00 0.00 0.00 3.86
5093 7886 5.529430 TGTTTTTCTTCTTCGCCTCATTGTA 59.471 36.000 0.00 0.00 0.00 2.41
5095 7888 3.247006 TCTTCTTCGCCTCATTGTACC 57.753 47.619 0.00 0.00 0.00 3.34
5107 7900 6.033966 GCCTCATTGTACCTTTAATTTTCCG 58.966 40.000 0.00 0.00 0.00 4.30
5145 7938 3.485463 AAAGATGAAACTCACGACCCA 57.515 42.857 0.00 0.00 0.00 4.51
5192 7985 0.962356 CCAGGCCACTAACCAGCTTG 60.962 60.000 5.01 0.00 33.74 4.01
5311 8113 8.487313 TCTTAAATGCGTAGATTTTTAGCTCA 57.513 30.769 0.00 0.00 0.00 4.26
5392 8218 9.781633 TGATGAACTTTTTCCAAATTTGATGAT 57.218 25.926 19.86 0.00 0.00 2.45
5566 8451 8.798859 TTCCAAATCAATGAACCTTTTTCAAA 57.201 26.923 0.00 0.00 31.55 2.69
5568 8453 9.406113 TCCAAATCAATGAACCTTTTTCAAATT 57.594 25.926 0.00 0.00 31.55 1.82
5569 8454 9.667989 CCAAATCAATGAACCTTTTTCAAATTC 57.332 29.630 0.00 0.00 31.55 2.17
5570 8455 9.372541 CAAATCAATGAACCTTTTTCAAATTCG 57.627 29.630 0.00 0.00 31.55 3.34
5571 8456 8.885494 AATCAATGAACCTTTTTCAAATTCGA 57.115 26.923 0.00 0.00 31.55 3.71
5572 8457 9.492973 AATCAATGAACCTTTTTCAAATTCGAT 57.507 25.926 0.00 0.00 31.55 3.59
5573 8458 8.296799 TCAATGAACCTTTTTCAAATTCGATG 57.703 30.769 0.00 0.00 31.55 3.84
5576 8461 8.693542 ATGAACCTTTTTCAAATTCGATGATC 57.306 30.769 0.00 0.00 31.55 2.92
5578 8463 8.359642 TGAACCTTTTTCAAATTCGATGATCTT 58.640 29.630 0.00 0.00 0.00 2.40
5580 8465 9.546428 AACCTTTTTCAAATTCGATGATCTTTT 57.454 25.926 0.00 0.00 0.00 2.27
5756 8661 2.412089 GGCTGAGTAATAAATAGCGCGG 59.588 50.000 8.83 0.00 35.31 6.46
5790 8695 9.881529 AGTTCTAAAATAATTCGCGTTGTTTTA 57.118 25.926 17.13 17.13 35.17 1.52
5802 8707 3.466836 CGTTGTTTTAGTTCACTAGCGC 58.533 45.455 0.00 0.00 0.00 5.92
5819 8724 0.527385 CGCTCTGAAGCTCTAGTGGC 60.527 60.000 0.00 3.03 46.91 5.01
5838 8743 6.856895 AGTGGCTAAGCTAAGCAATTAAAAG 58.143 36.000 0.00 0.00 44.64 2.27
5841 8746 7.812669 GTGGCTAAGCTAAGCAATTAAAAGAAA 59.187 33.333 0.00 0.00 44.64 2.52
5843 8748 9.371136 GGCTAAGCTAAGCAATTAAAAGAAATT 57.629 29.630 0.00 0.00 44.64 1.82
5848 8753 8.037166 AGCTAAGCAATTAAAAGAAATTGAGGG 58.963 33.333 12.25 2.29 45.61 4.30
5849 8754 7.278646 GCTAAGCAATTAAAAGAAATTGAGGGG 59.721 37.037 12.25 2.57 45.61 4.79
5850 8755 6.053632 AGCAATTAAAAGAAATTGAGGGGG 57.946 37.500 12.25 0.00 45.61 5.40
5851 8756 5.784906 AGCAATTAAAAGAAATTGAGGGGGA 59.215 36.000 12.25 0.00 45.61 4.81
5852 8757 6.070596 AGCAATTAAAAGAAATTGAGGGGGAG 60.071 38.462 12.25 0.00 45.61 4.30
5853 8758 5.939764 ATTAAAAGAAATTGAGGGGGAGC 57.060 39.130 0.00 0.00 0.00 4.70
5854 8759 2.238084 AAAGAAATTGAGGGGGAGCC 57.762 50.000 0.00 0.00 0.00 4.70
5855 8760 1.084018 AAGAAATTGAGGGGGAGCCA 58.916 50.000 0.00 0.00 0.00 4.75
5856 8761 1.084018 AGAAATTGAGGGGGAGCCAA 58.916 50.000 0.00 0.00 0.00 4.52
5857 8762 1.006400 AGAAATTGAGGGGGAGCCAAG 59.994 52.381 0.00 0.00 0.00 3.61
5858 8763 0.615827 AAATTGAGGGGGAGCCAAGC 60.616 55.000 0.00 0.00 0.00 4.01
5859 8764 1.803453 AATTGAGGGGGAGCCAAGCA 61.803 55.000 0.00 0.00 0.00 3.91
5860 8765 1.803453 ATTGAGGGGGAGCCAAGCAA 61.803 55.000 0.00 0.00 0.00 3.91
5861 8766 1.803453 TTGAGGGGGAGCCAAGCAAT 61.803 55.000 0.00 0.00 0.00 3.56
5862 8767 1.000866 GAGGGGGAGCCAAGCAATT 59.999 57.895 0.00 0.00 0.00 2.32
5863 8768 0.258774 GAGGGGGAGCCAAGCAATTA 59.741 55.000 0.00 0.00 0.00 1.40
5864 8769 0.033109 AGGGGGAGCCAAGCAATTAC 60.033 55.000 0.00 0.00 0.00 1.89
5865 8770 0.324275 GGGGGAGCCAAGCAATTACA 60.324 55.000 0.00 0.00 0.00 2.41
5866 8771 1.689258 GGGGGAGCCAAGCAATTACAT 60.689 52.381 0.00 0.00 0.00 2.29
5867 8772 1.410153 GGGGAGCCAAGCAATTACATG 59.590 52.381 0.00 0.00 0.00 3.21
5868 8773 1.410153 GGGAGCCAAGCAATTACATGG 59.590 52.381 0.00 0.00 36.00 3.66
5869 8774 2.102578 GGAGCCAAGCAATTACATGGT 58.897 47.619 2.07 0.00 35.34 3.55
5870 8775 2.497273 GGAGCCAAGCAATTACATGGTT 59.503 45.455 2.07 0.00 41.40 3.67
5875 8780 2.634982 AGCAATTACATGGTTGTGCG 57.365 45.000 0.00 0.00 36.53 5.34
5876 8781 1.202114 AGCAATTACATGGTTGTGCGG 59.798 47.619 0.00 0.00 36.53 5.69
5877 8782 1.735369 GCAATTACATGGTTGTGCGGG 60.735 52.381 0.00 0.00 36.53 6.13
5878 8783 1.135141 CAATTACATGGTTGTGCGGGG 60.135 52.381 0.00 0.00 36.53 5.73
5879 8784 1.319614 ATTACATGGTTGTGCGGGGC 61.320 55.000 0.00 0.00 36.53 5.80
5884 8789 4.778143 GGTTGTGCGGGGCGAGAT 62.778 66.667 0.00 0.00 0.00 2.75
5885 8790 3.195698 GTTGTGCGGGGCGAGATC 61.196 66.667 0.00 0.00 0.00 2.75
5886 8791 4.812476 TTGTGCGGGGCGAGATCG 62.812 66.667 0.00 0.00 43.27 3.69
5888 8793 4.286320 GTGCGGGGCGAGATCGAT 62.286 66.667 6.39 0.00 43.02 3.59
5889 8794 3.536917 TGCGGGGCGAGATCGATT 61.537 61.111 6.39 0.00 43.02 3.34
5890 8795 2.735100 GCGGGGCGAGATCGATTC 60.735 66.667 6.39 0.00 43.02 2.52
5891 8796 2.049063 CGGGGCGAGATCGATTCC 60.049 66.667 6.39 4.03 43.02 3.01
5892 8797 2.344129 GGGGCGAGATCGATTCCC 59.656 66.667 6.39 14.10 43.02 3.97
5893 8798 2.344129 GGGCGAGATCGATTCCCC 59.656 66.667 6.39 3.65 43.02 4.81
5894 8799 2.507854 GGGCGAGATCGATTCCCCA 61.508 63.158 6.39 0.00 43.02 4.96
5895 8800 1.674057 GGCGAGATCGATTCCCCAT 59.326 57.895 6.39 0.00 43.02 4.00
5896 8801 0.895530 GGCGAGATCGATTCCCCATA 59.104 55.000 6.39 0.00 43.02 2.74
5897 8802 1.482593 GGCGAGATCGATTCCCCATAT 59.517 52.381 6.39 0.00 43.02 1.78
5898 8803 2.693591 GGCGAGATCGATTCCCCATATA 59.306 50.000 6.39 0.00 43.02 0.86
5899 8804 3.322254 GGCGAGATCGATTCCCCATATAT 59.678 47.826 6.39 0.00 43.02 0.86
5900 8805 4.523173 GGCGAGATCGATTCCCCATATATA 59.477 45.833 6.39 0.00 43.02 0.86
5901 8806 5.186021 GGCGAGATCGATTCCCCATATATAT 59.814 44.000 6.39 0.00 43.02 0.86
5902 8807 6.295349 GGCGAGATCGATTCCCCATATATATT 60.295 42.308 6.39 0.00 43.02 1.28
5903 8808 6.587990 GCGAGATCGATTCCCCATATATATTG 59.412 42.308 6.39 0.00 43.02 1.90
5904 8809 6.587990 CGAGATCGATTCCCCATATATATTGC 59.412 42.308 0.00 0.00 43.02 3.56
5905 8810 6.773638 AGATCGATTCCCCATATATATTGCC 58.226 40.000 0.00 0.00 0.00 4.52
5906 8811 5.966853 TCGATTCCCCATATATATTGCCA 57.033 39.130 0.00 0.00 0.00 4.92
5907 8812 6.320434 TCGATTCCCCATATATATTGCCAA 57.680 37.500 0.00 0.00 0.00 4.52
5908 8813 6.910191 TCGATTCCCCATATATATTGCCAAT 58.090 36.000 0.00 0.00 0.00 3.16
5909 8814 7.353525 TCGATTCCCCATATATATTGCCAATT 58.646 34.615 0.00 0.00 0.00 2.32
5910 8815 7.838696 TCGATTCCCCATATATATTGCCAATTT 59.161 33.333 0.00 0.00 0.00 1.82
5911 8816 8.477256 CGATTCCCCATATATATTGCCAATTTT 58.523 33.333 0.00 0.00 0.00 1.82
5914 8819 7.835822 TCCCCATATATATTGCCAATTTTTCG 58.164 34.615 0.00 0.00 0.00 3.46
5915 8820 7.453126 TCCCCATATATATTGCCAATTTTTCGT 59.547 33.333 0.00 0.00 0.00 3.85
5916 8821 7.545265 CCCCATATATATTGCCAATTTTTCGTG 59.455 37.037 0.00 0.00 0.00 4.35
5917 8822 8.087750 CCCATATATATTGCCAATTTTTCGTGT 58.912 33.333 0.00 0.00 0.00 4.49
5918 8823 8.914654 CCATATATATTGCCAATTTTTCGTGTG 58.085 33.333 0.00 0.00 0.00 3.82
5919 8824 8.914654 CATATATATTGCCAATTTTTCGTGTGG 58.085 33.333 0.00 0.00 0.00 4.17
5920 8825 2.969628 TTGCCAATTTTTCGTGTGGT 57.030 40.000 0.00 0.00 33.43 4.16
5921 8826 2.969628 TGCCAATTTTTCGTGTGGTT 57.030 40.000 0.00 0.00 33.43 3.67
5922 8827 3.252974 TGCCAATTTTTCGTGTGGTTT 57.747 38.095 0.00 0.00 33.43 3.27
5923 8828 3.600388 TGCCAATTTTTCGTGTGGTTTT 58.400 36.364 0.00 0.00 33.43 2.43
5924 8829 4.003648 TGCCAATTTTTCGTGTGGTTTTT 58.996 34.783 0.00 0.00 33.43 1.94
5969 8874 3.760738 TGGATGTTGCTTGATAACCACA 58.239 40.909 0.00 0.00 0.00 4.17
5996 8901 3.244249 TGTGATGTACAATGAACACCGGA 60.244 43.478 9.46 0.00 36.06 5.14
6036 8941 0.481128 CCCCTAATTTGGGCCGGTAT 59.519 55.000 18.62 0.00 45.78 2.73
6129 9074 9.642343 AGTAAACCCTTCATTTCTTTCTTTACT 57.358 29.630 0.00 0.00 30.62 2.24
6237 9184 4.931661 TCAGTAGACGAGGACAAGTTTT 57.068 40.909 0.00 0.00 0.00 2.43
6244 9191 4.752101 AGACGAGGACAAGTTTTCAGATTG 59.248 41.667 0.00 0.00 0.00 2.67
6304 9251 0.392998 ATGAAGGACGCGGCTTCAAT 60.393 50.000 23.98 8.06 39.98 2.57
6343 9290 7.168219 ACTAAGAATGACTAAGCAATGGACAA 58.832 34.615 0.00 0.00 0.00 3.18
6366 9313 4.717280 ACTAAATCAGGACCCTACCTCAAG 59.283 45.833 0.00 0.00 38.32 3.02
6368 9315 2.233305 TCAGGACCCTACCTCAAGTC 57.767 55.000 0.00 0.00 38.32 3.01
6381 9328 6.489361 CCTACCTCAAGTCCTACACGTATATT 59.511 42.308 0.00 0.00 0.00 1.28
6385 9332 4.577693 TCAAGTCCTACACGTATATTCGCT 59.422 41.667 1.22 0.00 0.00 4.93
6426 9373 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
6427 9374 1.152510 GTGTGTGTGTGTGTGTGTCA 58.847 50.000 0.00 0.00 0.00 3.58
6428 9375 1.737236 GTGTGTGTGTGTGTGTGTCAT 59.263 47.619 0.00 0.00 0.00 3.06
6429 9376 1.736681 TGTGTGTGTGTGTGTGTCATG 59.263 47.619 0.00 0.00 0.00 3.07
6430 9377 1.737236 GTGTGTGTGTGTGTGTCATGT 59.263 47.619 0.00 0.00 0.00 3.21
6431 9378 1.736681 TGTGTGTGTGTGTGTCATGTG 59.263 47.619 0.00 0.00 0.00 3.21
6432 9379 1.737236 GTGTGTGTGTGTGTCATGTGT 59.263 47.619 0.00 0.00 0.00 3.72
6433 9380 2.933260 GTGTGTGTGTGTGTCATGTGTA 59.067 45.455 0.00 0.00 0.00 2.90
6434 9381 2.933260 TGTGTGTGTGTGTCATGTGTAC 59.067 45.455 0.00 0.00 0.00 2.90
6435 9382 2.933260 GTGTGTGTGTGTCATGTGTACA 59.067 45.455 0.00 0.00 0.00 2.90
6436 9383 3.372514 GTGTGTGTGTGTCATGTGTACAA 59.627 43.478 0.00 0.00 0.00 2.41
6437 9384 3.372514 TGTGTGTGTGTCATGTGTACAAC 59.627 43.478 0.00 0.00 0.00 3.32
6438 9385 3.621268 GTGTGTGTGTCATGTGTACAACT 59.379 43.478 0.00 0.00 0.00 3.16
6439 9386 3.868661 TGTGTGTGTCATGTGTACAACTC 59.131 43.478 0.00 0.00 0.00 3.01
6440 9387 3.247648 GTGTGTGTCATGTGTACAACTCC 59.752 47.826 0.00 0.00 0.00 3.85
6441 9388 3.133901 TGTGTGTCATGTGTACAACTCCT 59.866 43.478 0.00 0.00 0.00 3.69
6442 9389 4.342665 TGTGTGTCATGTGTACAACTCCTA 59.657 41.667 0.00 0.00 0.00 2.94
6443 9390 4.923871 GTGTGTCATGTGTACAACTCCTAG 59.076 45.833 0.00 0.00 0.00 3.02
6444 9391 4.587262 TGTGTCATGTGTACAACTCCTAGT 59.413 41.667 0.00 0.00 0.00 2.57
6445 9392 4.923871 GTGTCATGTGTACAACTCCTAGTG 59.076 45.833 0.00 0.00 0.00 2.74
6446 9393 4.587262 TGTCATGTGTACAACTCCTAGTGT 59.413 41.667 0.00 0.00 0.00 3.55
6447 9394 5.069914 TGTCATGTGTACAACTCCTAGTGTT 59.930 40.000 0.00 0.00 0.00 3.32
6448 9395 5.989777 GTCATGTGTACAACTCCTAGTGTTT 59.010 40.000 0.00 0.00 0.00 2.83
6449 9396 7.149973 GTCATGTGTACAACTCCTAGTGTTTA 58.850 38.462 0.00 0.00 0.00 2.01
6450 9397 7.328737 GTCATGTGTACAACTCCTAGTGTTTAG 59.671 40.741 0.00 0.00 0.00 1.85
6451 9398 6.720112 TGTGTACAACTCCTAGTGTTTAGT 57.280 37.500 0.00 0.00 0.00 2.24
6452 9399 7.116075 TGTGTACAACTCCTAGTGTTTAGTT 57.884 36.000 0.00 0.00 32.52 2.24
6453 9400 8.236585 TGTGTACAACTCCTAGTGTTTAGTTA 57.763 34.615 0.00 0.00 31.20 2.24
6454 9401 8.694540 TGTGTACAACTCCTAGTGTTTAGTTAA 58.305 33.333 0.00 0.00 31.20 2.01
6455 9402 9.533253 GTGTACAACTCCTAGTGTTTAGTTAAA 57.467 33.333 0.00 0.00 31.20 1.52
6475 9422 8.877195 AGTTAAAATAAGGACTAACACCTCTCA 58.123 33.333 0.00 0.00 36.67 3.27
6476 9423 9.498176 GTTAAAATAAGGACTAACACCTCTCAA 57.502 33.333 0.00 0.00 36.67 3.02
6479 9426 9.588096 AAAATAAGGACTAACACCTCTCAATTT 57.412 29.630 0.00 0.00 36.67 1.82
6480 9427 9.588096 AAATAAGGACTAACACCTCTCAATTTT 57.412 29.630 0.00 0.00 36.67 1.82
6481 9428 9.588096 AATAAGGACTAACACCTCTCAATTTTT 57.412 29.630 0.00 0.00 36.67 1.94
6525 9472 5.717119 AGGAAAATGCTTATAGGTGAGGT 57.283 39.130 0.00 0.00 0.00 3.85
6575 9522 4.205587 ATTTTGGAAAATTTGCAGTGGCA 58.794 34.783 0.00 0.00 40.70 4.92
6595 9542 1.941325 AGTGCTATAAACTGCTCGCC 58.059 50.000 0.00 0.00 0.00 5.54
6648 9595 0.179468 TGCGTAATTAGGGAGCCACC 59.821 55.000 7.25 0.00 38.08 4.61
6687 9634 4.937201 AATTTCTCCAAAGGCGAAAAGT 57.063 36.364 5.43 0.00 39.39 2.66
6716 9663 1.301401 GGCACGTACAACAGGCTCA 60.301 57.895 0.00 0.00 0.00 4.26
6743 9690 2.176273 GCCATGCTAGTCAGTGGCG 61.176 63.158 16.49 0.00 46.50 5.69
6810 9760 6.092748 CCATCGGTTTCAAATTTTGTAGGAG 58.907 40.000 8.89 0.98 0.00 3.69
6852 9802 2.343758 CGCCCGCCACAGCTATAT 59.656 61.111 0.00 0.00 36.60 0.86
6908 9858 4.559502 GCGGGTGTTATCTGCCAT 57.440 55.556 0.00 0.00 0.00 4.40
6920 9870 2.370281 TCTGCCATTCGTCACTCTTC 57.630 50.000 0.00 0.00 0.00 2.87
6928 9878 3.599730 TTCGTCACTCTTCTGCATGAT 57.400 42.857 0.00 0.00 0.00 2.45
7000 9950 5.896073 TCTTTCTCCCTTTGTCTTTCTCT 57.104 39.130 0.00 0.00 0.00 3.10
7001 9951 5.859495 TCTTTCTCCCTTTGTCTTTCTCTC 58.141 41.667 0.00 0.00 0.00 3.20
7015 9965 4.161976 TCTCTCGCTTCGCCGTCG 62.162 66.667 0.00 0.00 0.00 5.12
7077 10027 2.034879 CGCGGTCTGTTGCCTCAAT 61.035 57.895 0.00 0.00 0.00 2.57
7078 10028 1.577328 CGCGGTCTGTTGCCTCAATT 61.577 55.000 0.00 0.00 0.00 2.32
7106 10056 1.492764 GGACCTAATCTTCCCCGTCA 58.507 55.000 0.00 0.00 0.00 4.35
7190 10140 2.577606 TCCCAATCACAATGTTCCGT 57.422 45.000 0.00 0.00 0.00 4.69
7222 10172 1.482621 CTCCAATGTCATCGGCGTCG 61.483 60.000 1.15 1.15 37.82 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.274468 CGAATTAATTCATAGTCTCTCCATCCG 59.726 40.741 24.23 4.70 36.61 4.18
73 74 7.684670 ACTTCTGTTGCGTTGTGTTATATATG 58.315 34.615 0.00 0.00 0.00 1.78
109 122 3.499918 AGTAGTCGGTGTGTGTAGTGTAC 59.500 47.826 0.00 0.00 0.00 2.90
147 160 2.027653 TGCGGGATATGTTTCTCACACA 60.028 45.455 0.00 0.00 38.61 3.72
291 305 9.255304 GGCAAATAGTTGTGTATTTCAAAAAGA 57.745 29.630 4.65 0.00 37.06 2.52
388 403 7.093509 ACTCCTTACTTGTTGGTTGAAATTGTT 60.094 33.333 0.00 0.00 0.00 2.83
392 407 5.238650 CGACTCCTTACTTGTTGGTTGAAAT 59.761 40.000 0.00 0.00 0.00 2.17
411 426 7.742089 GTGCATATTGCTTATGTTATTCGACTC 59.258 37.037 0.00 0.00 45.31 3.36
518 533 4.688879 CACCGTTCTCATAGTTAAGTTGCA 59.311 41.667 0.00 0.00 0.00 4.08
519 534 4.927425 TCACCGTTCTCATAGTTAAGTTGC 59.073 41.667 0.00 0.00 0.00 4.17
526 541 5.717078 TTGTACTCACCGTTCTCATAGTT 57.283 39.130 0.00 0.00 0.00 2.24
593 608 2.264005 ACTGTTGTCGGTTGGCAATA 57.736 45.000 1.92 0.00 0.00 1.90
608 623 3.945285 CCTCTTGTGGTTGTTGTTACTGT 59.055 43.478 0.00 0.00 0.00 3.55
632 647 5.287226 CAAACTCTGCTTTGCTGAAATCTT 58.713 37.500 1.25 0.00 36.19 2.40
678 693 5.172591 GCGGTTAAAGAGCAGTTTGTAAAAC 59.827 40.000 0.00 0.00 0.00 2.43
752 767 6.484288 TGAGCTGAAATTTTGAGGGAATCTA 58.516 36.000 0.00 0.00 0.00 1.98
780 795 2.279935 TGGGTAGGCAAATCGTGTTT 57.720 45.000 0.00 0.00 0.00 2.83
803 818 3.991773 TCTACAATTTTGGGAGACGAACG 59.008 43.478 0.00 0.00 0.00 3.95
806 821 5.815740 GCTATTCTACAATTTTGGGAGACGA 59.184 40.000 0.00 0.00 0.00 4.20
929 1728 9.469097 CTCTGTTCCCTAGCTGTTATATATAGT 57.531 37.037 0.00 0.00 0.00 2.12
980 1781 4.554292 CATGAATGCTAGCTACTCGATGT 58.446 43.478 17.23 0.00 0.00 3.06
996 1797 3.634504 TGTTGCTTCCCTATGCATGAAT 58.365 40.909 10.16 0.00 39.07 2.57
1015 1816 0.037303 CCACTGACAGGCTCCATTGT 59.963 55.000 7.51 0.00 0.00 2.71
1023 1824 2.362242 TGGACTACCACTGACAGGC 58.638 57.895 7.51 0.00 41.77 4.85
1046 1847 0.460722 TCGGTTTCGTGGAACTGACA 59.539 50.000 0.00 0.00 39.37 3.58
1057 1858 3.156334 CGGAAGCAGTCGGTTTCG 58.844 61.111 0.00 0.00 44.50 3.46
1071 1872 0.460109 CTGTTGACATGCGGATCGGA 60.460 55.000 4.16 0.00 0.00 4.55
1094 1895 3.321648 TCCACTCAGTGCCGGCAT 61.322 61.111 35.23 18.91 31.34 4.40
1200 2007 0.687920 TCAGGTTTATGGGCGTGTCA 59.312 50.000 0.00 0.00 0.00 3.58
1209 2016 3.797039 TCGGAAGATGCTCAGGTTTATG 58.203 45.455 0.00 0.00 33.31 1.90
1513 2320 2.589157 CCACGGCCTTGTCTGGGTA 61.589 63.158 8.63 0.00 0.00 3.69
1998 2805 2.231478 GAGGAACTTGACGTCATCCAGA 59.769 50.000 29.28 12.09 41.55 3.86
2122 2972 1.889829 CTGTGGTTCCCGGCAAATTAA 59.110 47.619 0.00 0.00 0.00 1.40
2123 2973 1.074084 TCTGTGGTTCCCGGCAAATTA 59.926 47.619 0.00 0.00 0.00 1.40
2124 2974 0.178975 TCTGTGGTTCCCGGCAAATT 60.179 50.000 0.00 0.00 0.00 1.82
2125 2975 0.893727 GTCTGTGGTTCCCGGCAAAT 60.894 55.000 0.00 0.00 0.00 2.32
2637 3731 6.799441 CGTTCCTCTTATCAGATTCTATCACG 59.201 42.308 0.00 0.00 0.00 4.35
2827 3921 6.010219 AGCAGTATACCTTGACACCAAATTT 58.990 36.000 0.00 0.00 0.00 1.82
2828 3922 5.570320 AGCAGTATACCTTGACACCAAATT 58.430 37.500 0.00 0.00 0.00 1.82
2829 3923 5.179452 AGCAGTATACCTTGACACCAAAT 57.821 39.130 0.00 0.00 0.00 2.32
3006 4105 4.379374 AACTATTGTTGTACGTGCGAAC 57.621 40.909 0.00 5.21 34.71 3.95
3121 4220 6.652481 GGATGTATACAAGATCATGGGTTCAG 59.348 42.308 10.14 0.00 29.30 3.02
3225 4324 9.314321 AGATATCTTTGTGTTATCAGTTTACCG 57.686 33.333 0.00 0.00 32.49 4.02
3258 4357 7.706607 GCAAATTAAATCAATAGACCCCTTCAC 59.293 37.037 0.00 0.00 0.00 3.18
3676 4817 9.990360 GTCCTTCTGTTGGGAATTTTTATTTAA 57.010 29.630 0.00 0.00 33.01 1.52
3677 4818 8.590204 GGTCCTTCTGTTGGGAATTTTTATTTA 58.410 33.333 0.00 0.00 33.01 1.40
3691 4834 4.159506 TGGTTCTTTTTGGTCCTTCTGTTG 59.840 41.667 0.00 0.00 0.00 3.33
3732 4896 9.936759 TTTTCTGGTTATCTGTTTCTTGTTTTT 57.063 25.926 0.00 0.00 0.00 1.94
3737 4901 9.801873 TTTCTTTTTCTGGTTATCTGTTTCTTG 57.198 29.630 0.00 0.00 0.00 3.02
3831 5011 4.767928 TGTGGTTTTCTGTTGTGGTTTACT 59.232 37.500 0.00 0.00 0.00 2.24
3866 5046 2.111878 ACCGTGCTGCTTCTGCTT 59.888 55.556 0.00 0.00 40.48 3.91
3881 5061 0.329596 AGCCCAGATCAAGGTTCACC 59.670 55.000 0.00 0.00 0.00 4.02
3952 5132 7.231722 AGTGAATCCTTCTAACTATATGACGCT 59.768 37.037 0.00 0.00 0.00 5.07
3964 5144 8.463930 AACAATTTGTCAGTGAATCCTTCTAA 57.536 30.769 1.83 0.00 0.00 2.10
3976 5156 3.128589 ACGCAGTCAAACAATTTGTCAGT 59.871 39.130 1.83 0.00 29.74 3.41
3978 5158 3.773860 ACGCAGTCAAACAATTTGTCA 57.226 38.095 1.83 0.00 29.74 3.58
3991 5171 7.529519 CCGTTAATTTGCTTATTATACGCAGTC 59.470 37.037 3.73 0.00 43.93 3.51
4019 5199 2.222461 AGGGCCCCACCTGAATAATA 57.778 50.000 21.43 0.00 40.04 0.98
4063 5243 0.661020 AAACTGAAGCGTCAAACCGG 59.339 50.000 0.00 0.00 31.88 5.28
4069 5249 5.957842 ATTCCAAATAAACTGAAGCGTCA 57.042 34.783 1.47 1.47 0.00 4.35
4071 5251 6.423604 CCAAAATTCCAAATAAACTGAAGCGT 59.576 34.615 0.00 0.00 0.00 5.07
4171 6836 1.037493 TCGGTGTGTAACTGAGCACT 58.963 50.000 0.00 0.00 39.36 4.40
4569 7234 9.912634 TGTCTGATTCATTCCTATTTGTTTTTC 57.087 29.630 0.00 0.00 0.00 2.29
4618 7286 1.792006 TTTTCGTCGAAGCTCCTTCC 58.208 50.000 7.86 0.00 37.20 3.46
4662 7330 0.596083 CTACCCTCGCTCAAGCATCG 60.596 60.000 2.50 0.00 42.21 3.84
4667 7335 1.135257 CAGTGACTACCCTCGCTCAAG 60.135 57.143 0.00 0.00 0.00 3.02
4676 7344 1.376037 GTGGCTGCAGTGACTACCC 60.376 63.158 16.64 6.45 0.00 3.69
4679 7347 1.586541 CTCGTGGCTGCAGTGACTA 59.413 57.895 16.64 3.62 0.00 2.59
4689 7357 3.474570 GATGGCTCCCTCGTGGCT 61.475 66.667 0.00 0.00 0.00 4.75
4694 7362 3.680620 TTTGGCGATGGCTCCCTCG 62.681 63.158 8.87 8.87 39.81 4.63
4707 7375 2.568090 CGCCCACATGACTTTGGC 59.432 61.111 0.00 2.70 38.74 4.52
4716 7384 1.717791 CGACATTCATGCGCCCACAT 61.718 55.000 4.18 0.00 0.00 3.21
4718 7386 2.106074 TCGACATTCATGCGCCCAC 61.106 57.895 4.18 0.00 0.00 4.61
4742 7410 4.899239 CGACGATGGCTCCCTGGC 62.899 72.222 0.00 0.00 42.18 4.85
4755 7423 1.954146 CACCCACACTGGTTCGACG 60.954 63.158 0.00 0.00 36.12 5.12
4757 7425 2.050836 ATGCACCCACACTGGTTCGA 62.051 55.000 0.00 0.00 36.12 3.71
4762 7430 1.855213 CGTTCATGCACCCACACTGG 61.855 60.000 0.00 0.00 37.25 4.00
4764 7432 0.884704 GACGTTCATGCACCCACACT 60.885 55.000 0.00 0.00 0.00 3.55
4769 7437 1.705337 CCATCGACGTTCATGCACCC 61.705 60.000 0.00 0.00 0.00 4.61
4795 7463 4.537433 GCTTCGGCGATGGCTCCT 62.537 66.667 22.01 0.00 39.81 3.69
4814 7482 1.425267 CGACGTTCATGCGCCCATAA 61.425 55.000 4.18 0.00 34.88 1.90
4816 7484 3.195002 CGACGTTCATGCGCCCAT 61.195 61.111 4.18 0.00 34.88 4.00
4821 7489 2.681666 GTCGTCGACGTTCATGCG 59.318 61.111 34.40 9.66 40.80 4.73
4851 7519 2.419457 TACCCACCTTGTTGTCCCTA 57.581 50.000 0.00 0.00 0.00 3.53
4853 7521 2.560981 CAATTACCCACCTTGTTGTCCC 59.439 50.000 0.00 0.00 0.00 4.46
4864 7532 2.295070 ACAACCGCTTTCAATTACCCAC 59.705 45.455 0.00 0.00 0.00 4.61
4871 7539 1.851658 GCAACACAACCGCTTTCAAT 58.148 45.000 0.00 0.00 0.00 2.57
4872 7540 0.524392 CGCAACACAACCGCTTTCAA 60.524 50.000 0.00 0.00 0.00 2.69
4882 7550 0.098552 CTTCACAGCACGCAACACAA 59.901 50.000 0.00 0.00 0.00 3.33
4885 7553 0.461870 AGTCTTCACAGCACGCAACA 60.462 50.000 0.00 0.00 0.00 3.33
4886 7554 0.041839 CAGTCTTCACAGCACGCAAC 60.042 55.000 0.00 0.00 0.00 4.17
4887 7555 0.461870 ACAGTCTTCACAGCACGCAA 60.462 50.000 0.00 0.00 0.00 4.85
4894 7562 0.604780 CCTGGCCACAGTCTTCACAG 60.605 60.000 0.00 0.00 43.36 3.66
4896 7564 1.302832 CCCTGGCCACAGTCTTCAC 60.303 63.158 0.00 0.00 43.36 3.18
4897 7565 0.842030 ATCCCTGGCCACAGTCTTCA 60.842 55.000 0.00 0.00 43.36 3.02
4898 7566 0.393537 CATCCCTGGCCACAGTCTTC 60.394 60.000 0.00 0.00 43.36 2.87
4899 7567 1.687612 CATCCCTGGCCACAGTCTT 59.312 57.895 0.00 0.00 43.36 3.01
4900 7568 2.976490 GCATCCCTGGCCACAGTCT 61.976 63.158 0.00 0.00 43.36 3.24
4901 7569 2.439156 GCATCCCTGGCCACAGTC 60.439 66.667 0.00 0.00 43.36 3.51
4902 7570 4.415150 CGCATCCCTGGCCACAGT 62.415 66.667 0.00 0.00 43.36 3.55
4903 7571 4.415150 ACGCATCCCTGGCCACAG 62.415 66.667 0.00 0.00 44.51 3.66
4916 7584 0.943835 CGAGTGTGAACCATGACGCA 60.944 55.000 0.00 0.00 0.00 5.24
4919 7587 1.673033 CCCTCGAGTGTGAACCATGAC 60.673 57.143 12.31 0.00 0.00 3.06
4920 7588 0.608130 CCCTCGAGTGTGAACCATGA 59.392 55.000 12.31 0.00 0.00 3.07
4923 7591 1.152419 TCCCCTCGAGTGTGAACCA 60.152 57.895 12.31 0.00 0.00 3.67
4928 7596 2.575993 CAGCTCCCCTCGAGTGTG 59.424 66.667 12.31 4.43 41.10 3.82
4929 7597 2.681778 CCAGCTCCCCTCGAGTGT 60.682 66.667 12.31 0.00 41.10 3.55
4941 7609 0.687757 TAGGAATCACCGAGCCAGCT 60.688 55.000 0.00 0.00 44.74 4.24
4952 7621 2.418368 ACAGCGCCAAATAGGAATCA 57.582 45.000 2.29 0.00 41.22 2.57
4953 7622 2.808543 CCTACAGCGCCAAATAGGAATC 59.191 50.000 15.32 0.00 41.22 2.52
4966 7635 2.024176 AATAACAGGCACCTACAGCG 57.976 50.000 0.00 0.00 0.00 5.18
4975 7644 5.973899 TGCAGAAACAATAATAACAGGCA 57.026 34.783 0.00 0.00 0.00 4.75
4977 7646 7.278424 CCCATTTGCAGAAACAATAATAACAGG 59.722 37.037 0.00 0.00 0.00 4.00
4979 7648 6.593382 GCCCATTTGCAGAAACAATAATAACA 59.407 34.615 0.00 0.00 0.00 2.41
4984 7653 3.583806 CGCCCATTTGCAGAAACAATAA 58.416 40.909 0.00 0.00 0.00 1.40
4987 7656 0.599728 GCGCCCATTTGCAGAAACAA 60.600 50.000 0.00 0.00 0.00 2.83
5015 7684 1.429423 GGCCGAGCACAACTAATGC 59.571 57.895 0.00 0.00 43.74 3.56
5025 7817 0.107410 ACGAAATAATGGGCCGAGCA 60.107 50.000 0.00 0.00 0.00 4.26
5030 7822 0.736053 TGCGAACGAAATAATGGGCC 59.264 50.000 0.00 0.00 0.00 5.80
5031 7823 2.182014 GTTGCGAACGAAATAATGGGC 58.818 47.619 0.00 0.00 0.00 5.36
5042 7834 4.389576 GCAGGCTGGTTGCGAACG 62.390 66.667 17.64 0.00 44.05 3.95
5043 7835 2.629656 ATGCAGGCTGGTTGCGAAC 61.630 57.895 17.64 0.00 44.40 3.95
5044 7836 2.282391 ATGCAGGCTGGTTGCGAA 60.282 55.556 17.64 0.00 44.40 4.70
5046 7838 2.424705 AAACATGCAGGCTGGTTGCG 62.425 55.000 17.64 0.00 44.40 4.85
5047 7839 0.668401 GAAACATGCAGGCTGGTTGC 60.668 55.000 17.64 6.98 41.86 4.17
5055 7848 4.111916 AGAAAAACAACGAAACATGCAGG 58.888 39.130 0.00 0.00 0.00 4.85
5117 7910 4.559300 CGTGAGTTTCATCTTTTGCCCAAT 60.559 41.667 0.00 0.00 0.00 3.16
5119 7912 2.293122 CGTGAGTTTCATCTTTTGCCCA 59.707 45.455 0.00 0.00 0.00 5.36
5127 7920 3.600388 GATTGGGTCGTGAGTTTCATCT 58.400 45.455 0.00 0.00 0.00 2.90
5145 7938 1.429148 GCGCATCCTTTCGGACGATT 61.429 55.000 0.30 0.00 43.51 3.34
5151 7944 2.387445 TTGTCGCGCATCCTTTCGG 61.387 57.895 8.75 0.00 0.00 4.30
5192 7985 6.659776 AGAGAAAAACGAAGAAATAGTGCAC 58.340 36.000 9.40 9.40 0.00 4.57
5399 8243 7.946237 CGACTTGAAAATTTTCATCGATTTTGG 59.054 33.333 33.23 18.61 45.39 3.28
5543 8428 9.667989 GAATTTGAAAAAGGTTCATTGATTTGG 57.332 29.630 0.00 0.00 0.00 3.28
5547 8432 8.928733 CATCGAATTTGAAAAAGGTTCATTGAT 58.071 29.630 0.00 0.00 0.00 2.57
5718 8623 6.900194 ACTCAGCCATTTATTATACCACTGT 58.100 36.000 0.00 0.00 0.00 3.55
5729 8634 7.413000 CGCGCTATTTATTACTCAGCCATTTAT 60.413 37.037 5.56 0.00 0.00 1.40
5756 8661 7.149288 CGCGAATTATTTTAGAACTAATGCAGC 60.149 37.037 0.00 0.00 0.00 5.25
5790 8695 1.403514 GCTTCAGAGCGCTAGTGAACT 60.404 52.381 24.02 9.11 39.48 3.01
5802 8707 3.490761 GCTTAGCCACTAGAGCTTCAGAG 60.491 52.174 15.44 10.49 41.83 3.35
5838 8743 1.478631 CTTGGCTCCCCCTCAATTTC 58.521 55.000 0.00 0.00 0.00 2.17
5841 8746 1.803453 TTGCTTGGCTCCCCCTCAAT 61.803 55.000 0.00 0.00 0.00 2.57
5843 8748 1.803453 AATTGCTTGGCTCCCCCTCA 61.803 55.000 0.00 0.00 0.00 3.86
5844 8749 0.258774 TAATTGCTTGGCTCCCCCTC 59.741 55.000 0.00 0.00 0.00 4.30
5845 8750 0.033109 GTAATTGCTTGGCTCCCCCT 60.033 55.000 0.00 0.00 0.00 4.79
5848 8753 1.410153 CCATGTAATTGCTTGGCTCCC 59.590 52.381 14.11 0.00 0.00 4.30
5849 8754 2.102578 ACCATGTAATTGCTTGGCTCC 58.897 47.619 22.93 0.00 37.23 4.70
5850 8755 3.056607 ACAACCATGTAATTGCTTGGCTC 60.057 43.478 22.93 0.00 38.24 4.70
5851 8756 2.899256 ACAACCATGTAATTGCTTGGCT 59.101 40.909 22.93 12.17 38.24 4.75
5852 8757 2.995258 CACAACCATGTAATTGCTTGGC 59.005 45.455 22.93 0.00 37.82 4.52
5853 8758 2.995258 GCACAACCATGTAATTGCTTGG 59.005 45.455 21.84 21.84 37.82 3.61
5854 8759 2.662637 CGCACAACCATGTAATTGCTTG 59.337 45.455 2.89 2.89 37.82 4.01
5855 8760 2.352617 CCGCACAACCATGTAATTGCTT 60.353 45.455 0.00 0.00 37.82 3.91
5856 8761 1.202114 CCGCACAACCATGTAATTGCT 59.798 47.619 0.00 0.00 37.82 3.91
5857 8762 1.627879 CCGCACAACCATGTAATTGC 58.372 50.000 0.00 0.00 37.82 3.56
5858 8763 1.135141 CCCCGCACAACCATGTAATTG 60.135 52.381 0.00 0.00 37.82 2.32
5859 8764 1.181786 CCCCGCACAACCATGTAATT 58.818 50.000 0.00 0.00 37.82 1.40
5860 8765 1.319614 GCCCCGCACAACCATGTAAT 61.320 55.000 0.00 0.00 37.82 1.89
5861 8766 1.974343 GCCCCGCACAACCATGTAA 60.974 57.895 0.00 0.00 37.82 2.41
5862 8767 2.360600 GCCCCGCACAACCATGTA 60.361 61.111 0.00 0.00 37.82 2.29
5867 8772 4.778143 ATCTCGCCCCGCACAACC 62.778 66.667 0.00 0.00 0.00 3.77
5868 8773 3.195698 GATCTCGCCCCGCACAAC 61.196 66.667 0.00 0.00 0.00 3.32
5869 8774 4.812476 CGATCTCGCCCCGCACAA 62.812 66.667 0.00 0.00 0.00 3.33
5871 8776 3.792053 AATCGATCTCGCCCCGCAC 62.792 63.158 0.00 0.00 39.60 5.34
5872 8777 3.499929 GAATCGATCTCGCCCCGCA 62.500 63.158 0.00 0.00 39.60 5.69
5873 8778 2.735100 GAATCGATCTCGCCCCGC 60.735 66.667 0.00 0.00 39.60 6.13
5874 8779 2.049063 GGAATCGATCTCGCCCCG 60.049 66.667 0.00 0.00 39.60 5.73
5875 8780 2.344129 GGGAATCGATCTCGCCCC 59.656 66.667 0.00 1.25 39.60 5.80
5876 8781 1.831652 ATGGGGAATCGATCTCGCCC 61.832 60.000 25.98 20.74 43.52 6.13
5877 8782 0.895530 TATGGGGAATCGATCTCGCC 59.104 55.000 24.08 24.08 44.22 5.54
5878 8783 2.969628 ATATGGGGAATCGATCTCGC 57.030 50.000 0.00 7.18 39.60 5.03
5879 8784 6.587990 GCAATATATATGGGGAATCGATCTCG 59.412 42.308 0.00 0.00 41.45 4.04
5880 8785 6.876257 GGCAATATATATGGGGAATCGATCTC 59.124 42.308 0.00 0.00 0.00 2.75
5881 8786 6.329986 TGGCAATATATATGGGGAATCGATCT 59.670 38.462 0.00 0.00 0.00 2.75
5882 8787 6.533730 TGGCAATATATATGGGGAATCGATC 58.466 40.000 0.00 0.00 0.00 3.69
5883 8788 6.514012 TGGCAATATATATGGGGAATCGAT 57.486 37.500 0.00 0.00 0.00 3.59
5884 8789 5.966853 TGGCAATATATATGGGGAATCGA 57.033 39.130 0.00 0.00 0.00 3.59
5885 8790 7.587037 AATTGGCAATATATATGGGGAATCG 57.413 36.000 14.05 0.00 0.00 3.34
5888 8793 8.310382 CGAAAAATTGGCAATATATATGGGGAA 58.690 33.333 14.05 0.00 0.00 3.97
5889 8794 7.453126 ACGAAAAATTGGCAATATATATGGGGA 59.547 33.333 14.05 0.00 0.00 4.81
5890 8795 7.545265 CACGAAAAATTGGCAATATATATGGGG 59.455 37.037 14.05 0.00 0.00 4.96
5891 8796 8.087750 ACACGAAAAATTGGCAATATATATGGG 58.912 33.333 14.05 6.11 0.00 4.00
5892 8797 8.914654 CACACGAAAAATTGGCAATATATATGG 58.085 33.333 14.05 4.63 0.00 2.74
5893 8798 8.914654 CCACACGAAAAATTGGCAATATATATG 58.085 33.333 14.05 10.31 0.00 1.78
5894 8799 8.637986 ACCACACGAAAAATTGGCAATATATAT 58.362 29.630 14.05 0.00 31.76 0.86
5895 8800 8.001881 ACCACACGAAAAATTGGCAATATATA 57.998 30.769 14.05 0.00 31.76 0.86
5896 8801 6.872920 ACCACACGAAAAATTGGCAATATAT 58.127 32.000 14.05 2.13 31.76 0.86
5897 8802 6.274157 ACCACACGAAAAATTGGCAATATA 57.726 33.333 14.05 0.00 31.76 0.86
5898 8803 5.146010 ACCACACGAAAAATTGGCAATAT 57.854 34.783 14.05 2.74 31.76 1.28
5899 8804 4.592485 ACCACACGAAAAATTGGCAATA 57.408 36.364 14.05 0.00 31.76 1.90
5900 8805 3.467374 ACCACACGAAAAATTGGCAAT 57.533 38.095 6.96 6.96 31.76 3.56
5901 8806 2.969628 ACCACACGAAAAATTGGCAA 57.030 40.000 0.68 0.68 31.76 4.52
5902 8807 2.969628 AACCACACGAAAAATTGGCA 57.030 40.000 0.00 0.00 31.76 4.92
5903 8808 4.608073 AAAAACCACACGAAAAATTGGC 57.392 36.364 0.00 0.00 31.76 4.52
5922 8827 6.665680 TGTAATTGCTTAGCTCCCCATAAAAA 59.334 34.615 5.60 0.00 0.00 1.94
5923 8828 6.191315 TGTAATTGCTTAGCTCCCCATAAAA 58.809 36.000 5.60 0.00 0.00 1.52
5924 8829 5.761205 TGTAATTGCTTAGCTCCCCATAAA 58.239 37.500 5.60 0.00 0.00 1.40
5925 8830 5.381184 TGTAATTGCTTAGCTCCCCATAA 57.619 39.130 5.60 0.00 0.00 1.90
5926 8831 5.316167 CATGTAATTGCTTAGCTCCCCATA 58.684 41.667 5.60 0.00 0.00 2.74
5927 8832 3.951563 TGTAATTGCTTAGCTCCCCAT 57.048 42.857 5.60 0.00 0.00 4.00
5928 8833 3.554934 CATGTAATTGCTTAGCTCCCCA 58.445 45.455 5.60 0.00 0.00 4.96
5929 8834 2.887152 CCATGTAATTGCTTAGCTCCCC 59.113 50.000 5.60 0.00 0.00 4.81
5930 8835 3.820557 TCCATGTAATTGCTTAGCTCCC 58.179 45.455 5.60 0.00 0.00 4.30
5931 8836 4.823989 ACATCCATGTAATTGCTTAGCTCC 59.176 41.667 5.60 0.00 39.68 4.70
5969 8874 6.037062 CGGTGTTCATTGTACATCACATATGT 59.963 38.462 1.41 1.41 36.90 2.29
5988 8893 4.429108 CAGAACAAAAATGTTCCGGTGTT 58.571 39.130 15.86 1.23 46.74 3.32
5992 8897 2.364002 ACCCAGAACAAAAATGTTCCGG 59.636 45.455 15.86 15.03 46.74 5.14
5996 8901 2.223947 GCGGACCCAGAACAAAAATGTT 60.224 45.455 0.00 0.00 34.29 2.71
6022 8927 6.844829 ACTAATTACTATACCGGCCCAAATT 58.155 36.000 0.00 3.39 0.00 1.82
6026 8931 4.900652 TCAACTAATTACTATACCGGCCCA 59.099 41.667 0.00 0.00 0.00 5.36
6036 8941 7.551617 GCTAAAGCAACCCTCAACTAATTACTA 59.448 37.037 0.00 0.00 41.59 1.82
6129 9074 4.021807 TCCTAGCAATTAATCGCCATCGTA 60.022 41.667 0.00 0.00 36.96 3.43
6237 9184 6.716173 TCATCCAAAAGTTGATGACAATCTGA 59.284 34.615 0.00 0.00 38.32 3.27
6304 9251 7.924412 AGTCATTCTTAGTTGACGTTGAAAGTA 59.076 33.333 10.56 0.00 45.42 2.24
6343 9290 4.348020 TGAGGTAGGGTCCTGATTTAGT 57.652 45.455 0.00 0.00 38.02 2.24
6366 9313 8.955061 TTATTTAGCGAATATACGTGTAGGAC 57.045 34.615 0.00 0.00 35.59 3.85
6381 9328 5.237561 ACACACACACACATTTATTTAGCGA 59.762 36.000 0.00 0.00 0.00 4.93
6385 9332 6.969473 CACACACACACACACACATTTATTTA 59.031 34.615 0.00 0.00 0.00 1.40
6394 9341 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6426 9373 7.152645 ACTAAACACTAGGAGTTGTACACATG 58.847 38.462 0.00 0.00 0.00 3.21
6427 9374 7.299246 ACTAAACACTAGGAGTTGTACACAT 57.701 36.000 0.00 0.00 0.00 3.21
6428 9375 6.720112 ACTAAACACTAGGAGTTGTACACA 57.280 37.500 0.00 0.00 0.00 3.72
6429 9376 9.533253 TTTAACTAAACACTAGGAGTTGTACAC 57.467 33.333 0.00 0.00 34.15 2.90
6449 9396 8.877195 TGAGAGGTGTTAGTCCTTATTTTAACT 58.123 33.333 0.00 0.00 35.20 2.24
6450 9397 9.498176 TTGAGAGGTGTTAGTCCTTATTTTAAC 57.502 33.333 0.00 0.00 35.20 2.01
6453 9400 9.588096 AAATTGAGAGGTGTTAGTCCTTATTTT 57.412 29.630 0.00 0.00 35.20 1.82
6454 9401 9.588096 AAAATTGAGAGGTGTTAGTCCTTATTT 57.412 29.630 0.00 0.00 35.20 1.40
6455 9402 9.588096 AAAAATTGAGAGGTGTTAGTCCTTATT 57.412 29.630 0.00 0.00 35.20 1.40
6497 9444 9.178758 CTCACCTATAAGCATTTTCCTAGTTTT 57.821 33.333 0.00 0.00 0.00 2.43
6498 9445 7.775561 CCTCACCTATAAGCATTTTCCTAGTTT 59.224 37.037 0.00 0.00 0.00 2.66
6499 9446 7.092399 ACCTCACCTATAAGCATTTTCCTAGTT 60.092 37.037 0.00 0.00 0.00 2.24
6510 9457 0.837272 GCCCACCTCACCTATAAGCA 59.163 55.000 0.00 0.00 0.00 3.91
6522 9469 4.643387 GCAAGTCCACGCCCACCT 62.643 66.667 0.00 0.00 0.00 4.00
6525 9472 4.947147 GGTGCAAGTCCACGCCCA 62.947 66.667 0.00 0.00 36.59 5.36
6575 9522 2.280628 GGCGAGCAGTTTATAGCACTT 58.719 47.619 0.00 0.00 0.00 3.16
6576 9523 1.207089 TGGCGAGCAGTTTATAGCACT 59.793 47.619 0.00 0.00 0.00 4.40
6648 9595 5.936956 AGAAATTAGCAAGAGTGTTGGAGAG 59.063 40.000 1.77 0.00 0.00 3.20
6687 9634 1.826096 TGTACGTGCCTGCCATAGTTA 59.174 47.619 0.00 0.00 0.00 2.24
6716 9663 1.300963 CTAGCATGGCACCAGTGGT 59.699 57.895 9.70 9.70 35.62 4.16
6743 9690 1.810030 CGGTCGCTAGAAACTGCCC 60.810 63.158 0.00 0.00 0.00 5.36
6783 9731 2.741517 CAAAATTTGAAACCGATGGGGC 59.258 45.455 0.00 0.00 40.62 5.80
6810 9760 2.433868 TAGGACTCGACACTGCAAAC 57.566 50.000 0.00 0.00 0.00 2.93
6908 9858 3.194329 AGATCATGCAGAAGAGTGACGAA 59.806 43.478 0.00 0.00 0.00 3.85
6920 9870 3.931468 GTCGGATGGATAAGATCATGCAG 59.069 47.826 0.00 0.00 32.37 4.41
6928 9878 0.673985 CTGCGGTCGGATGGATAAGA 59.326 55.000 0.00 0.00 0.00 2.10
7024 9974 1.136984 CAGAGTAGGACGCCACGAC 59.863 63.158 0.00 0.00 0.00 4.34
7061 10011 0.523072 CCAATTGAGGCAACAGACCG 59.477 55.000 7.12 0.00 41.41 4.79
7077 10027 2.894240 GATTAGGTCCGCGACGCCAA 62.894 60.000 15.34 0.00 32.65 4.52
7078 10028 3.420214 GATTAGGTCCGCGACGCCA 62.420 63.158 15.34 0.00 32.65 5.69
7222 10172 1.729881 GGATGGCGAGTTTGATGGC 59.270 57.895 0.00 0.00 0.00 4.40
7293 10243 0.489567 AACAGAGAGAGGGGAGGTGT 59.510 55.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.