Multiple sequence alignment - TraesCS7D01G111000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G111000 chr7D 100.000 3106 0 0 1 3106 66834605 66831500 0.000000e+00 5736.0
1 TraesCS7D01G111000 chr7D 78.419 468 65 15 910 1365 66821738 66821295 3.950000e-69 272.0
2 TraesCS7D01G111000 chr7D 94.118 34 2 0 1456 1489 101559372 101559339 6.000000e-03 52.8
3 TraesCS7D01G111000 chr7B 91.415 1654 66 21 824 2451 8929212 8927609 0.000000e+00 2198.0
4 TraesCS7D01G111000 chr7B 96.805 626 13 1 2488 3106 8927610 8926985 0.000000e+00 1038.0
5 TraesCS7D01G111000 chr7B 78.571 658 89 38 3 639 8930902 8930276 1.350000e-103 387.0
6 TraesCS7D01G111000 chr7B 97.458 118 3 0 712 829 8929383 8929266 5.250000e-48 202.0
7 TraesCS7D01G111000 chr7B 86.667 120 13 3 644 761 8923312 8923194 2.510000e-26 130.0
8 TraesCS7D01G111000 chr7B 77.778 171 18 12 952 1112 8922471 8922311 1.530000e-13 87.9
9 TraesCS7D01G111000 chr7B 97.917 48 1 0 645 692 8930138 8930091 1.980000e-12 84.2
10 TraesCS7D01G111000 chr7B 89.286 56 4 2 2724 2778 447984793 447984847 5.560000e-08 69.4
11 TraesCS7D01G111000 chr7B 100.000 29 0 0 1455 1483 5156371 5156399 2.000000e-03 54.7
12 TraesCS7D01G111000 chr7A 86.957 989 76 25 1606 2560 73774779 73775748 0.000000e+00 1062.0
13 TraesCS7D01G111000 chr7A 92.913 635 35 4 824 1448 73773890 73774524 0.000000e+00 915.0
14 TraesCS7D01G111000 chr7A 92.453 159 10 2 637 795 73773622 73773778 3.120000e-55 226.0
15 TraesCS7D01G111000 chr7A 76.826 397 45 23 984 1365 73937924 73938288 2.460000e-41 180.0
16 TraesCS7D01G111000 chr5D 83.673 98 12 2 1455 1548 160903887 160903984 4.270000e-14 89.8
17 TraesCS7D01G111000 chr5D 94.118 34 2 0 1456 1489 553456188 553456155 6.000000e-03 52.8
18 TraesCS7D01G111000 chr2A 80.435 92 14 2 1456 1543 700644685 700644776 2.000000e-07 67.6
19 TraesCS7D01G111000 chr3D 86.667 60 3 2 2724 2778 146137520 146137461 9.300000e-06 62.1
20 TraesCS7D01G111000 chr3D 96.970 33 0 1 2747 2778 260560388 260560356 2.000000e-03 54.7
21 TraesCS7D01G111000 chr3D 96.875 32 1 0 1427 1458 569331636 569331605 2.000000e-03 54.7
22 TraesCS7D01G111000 chr4A 78.704 108 7 6 2747 2847 119919138 119919236 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G111000 chr7D 66831500 66834605 3105 True 5736.000000 5736 100.000000 1 3106 1 chr7D.!!$R2 3105
1 TraesCS7D01G111000 chr7B 8922311 8930902 8591 True 589.585714 2198 89.515857 3 3106 7 chr7B.!!$R1 3103
2 TraesCS7D01G111000 chr7A 73773622 73775748 2126 False 734.333333 1062 90.774333 637 2560 3 chr7A.!!$F2 1923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 1775 1.807738 GTACGTTACGCGGAGAAGAG 58.192 55.0 12.47 1.61 46.52 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2579 3677 0.608035 GACCAACCAGGCCAAATCGA 60.608 55.0 5.01 0.0 43.14 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 210 9.509855 TTTGAAACTCACACACATTAATGTAAC 57.490 29.630 20.39 4.42 39.39 2.50
266 268 9.657121 TTTAAATGAATCGTTTCAAATTTTGGC 57.343 25.926 12.62 0.46 44.70 4.52
267 269 6.857777 AATGAATCGTTTCAAATTTTGGCA 57.142 29.167 12.62 0.00 44.70 4.92
269 271 8.545229 AATGAATCGTTTCAAATTTTGGCATA 57.455 26.923 12.62 0.00 44.70 3.14
289 296 6.751888 GGCATAGTTTTCTAAAATGCACGAAT 59.248 34.615 12.00 0.00 37.54 3.34
436 443 9.744468 TTCTCTAAACTTTTGGCTAAATTTGTC 57.256 29.630 0.00 0.00 0.00 3.18
443 450 9.705290 AACTTTTGGCTAAATTTGTCGATATTT 57.295 25.926 0.00 0.00 0.00 1.40
459 466 9.378551 TGTCGATATTTCTTTAATACTTGTGCT 57.621 29.630 0.00 0.00 31.69 4.40
461 468 9.817809 TCGATATTTCTTTAATACTTGTGCTCT 57.182 29.630 0.00 0.00 31.69 4.09
556 574 9.898152 AATTAGAAACATTGTTTTGGAGGAAAA 57.102 25.926 15.54 3.60 0.00 2.29
570 588 3.344515 GAGGAAAACCGGCTGTAAATCT 58.655 45.455 0.00 0.00 0.00 2.40
572 590 4.913784 AGGAAAACCGGCTGTAAATCTTA 58.086 39.130 0.00 0.00 0.00 2.10
573 591 5.506708 AGGAAAACCGGCTGTAAATCTTAT 58.493 37.500 0.00 0.00 0.00 1.73
574 592 5.357032 AGGAAAACCGGCTGTAAATCTTATG 59.643 40.000 0.00 0.00 0.00 1.90
576 594 6.436843 AAAACCGGCTGTAAATCTTATGAG 57.563 37.500 0.00 0.00 0.00 2.90
577 595 5.353394 AACCGGCTGTAAATCTTATGAGA 57.647 39.130 0.00 0.00 36.09 3.27
582 600 7.339466 ACCGGCTGTAAATCTTATGAGAAAAAT 59.661 33.333 0.00 0.00 35.07 1.82
583 601 8.836413 CCGGCTGTAAATCTTATGAGAAAAATA 58.164 33.333 0.00 0.00 35.07 1.40
584 602 9.869844 CGGCTGTAAATCTTATGAGAAAAATAG 57.130 33.333 0.00 0.00 35.07 1.73
585 603 9.670719 GGCTGTAAATCTTATGAGAAAAATAGC 57.329 33.333 0.00 0.26 35.07 2.97
632 650 4.579869 ACGCAAAGAGTGTCAAATAGGAT 58.420 39.130 0.00 0.00 35.71 3.24
634 652 4.666237 GCAAAGAGTGTCAAATAGGATGC 58.334 43.478 0.00 0.00 0.00 3.91
639 657 5.211973 AGAGTGTCAAATAGGATGCCTCTA 58.788 41.667 0.00 0.00 34.61 2.43
640 658 5.663106 AGAGTGTCAAATAGGATGCCTCTAA 59.337 40.000 0.00 0.00 34.61 2.10
641 659 6.156949 AGAGTGTCAAATAGGATGCCTCTAAA 59.843 38.462 0.00 0.00 34.61 1.85
643 661 7.349598 AGTGTCAAATAGGATGCCTCTAAAAT 58.650 34.615 0.00 0.00 34.61 1.82
644 662 8.494433 AGTGTCAAATAGGATGCCTCTAAAATA 58.506 33.333 0.00 0.00 34.61 1.40
645 663 9.120538 GTGTCAAATAGGATGCCTCTAAAATAA 57.879 33.333 0.00 0.00 34.61 1.40
646 664 9.693739 TGTCAAATAGGATGCCTCTAAAATAAA 57.306 29.630 0.00 0.00 34.61 1.40
693 1501 8.983724 CCAACAAACTGTTTGAAGAACTTAAAA 58.016 29.630 33.05 0.00 43.26 1.52
852 1775 1.807738 GTACGTTACGCGGAGAAGAG 58.192 55.000 12.47 1.61 46.52 2.85
866 1789 2.167487 GAGAAGAGCGTTTCCCATCTCT 59.833 50.000 0.00 0.00 37.50 3.10
961 1892 2.224314 CGCTCGCTCACATCTCTACATA 59.776 50.000 0.00 0.00 0.00 2.29
1021 1952 4.181010 CGCCTGCCTGCCACCTAT 62.181 66.667 0.00 0.00 0.00 2.57
1024 1955 2.109799 CTGCCTGCCACCTATCGG 59.890 66.667 0.00 0.00 0.00 4.18
1233 2176 1.525995 CGACTTGGCAACCACCAGT 60.526 57.895 0.00 0.00 41.82 4.00
1324 2267 2.583593 GCCACGTCGAGATGCTCC 60.584 66.667 0.00 0.00 0.00 4.70
1327 2270 3.134792 ACGTCGAGATGCTCCGCT 61.135 61.111 0.00 0.00 0.00 5.52
1328 2271 1.818363 ACGTCGAGATGCTCCGCTA 60.818 57.895 0.00 0.00 0.00 4.26
1376 2319 2.122189 CCTCCCATCCCCCTCCTC 60.122 72.222 0.00 0.00 0.00 3.71
1384 2327 0.722676 ATCCCCCTCCTCCAACTACA 59.277 55.000 0.00 0.00 0.00 2.74
1448 2391 6.095160 CGCTATATATCTACTCCCTCCGTTTT 59.905 42.308 0.00 0.00 0.00 2.43
1566 2573 8.695284 GCTTCGTAGTCTGTATTGAAATATCTG 58.305 37.037 0.00 0.00 0.00 2.90
1594 2601 6.174049 AGTCTTACATTTAGAAACAGAGGGC 58.826 40.000 0.00 0.00 0.00 5.19
1677 2718 4.722361 AGGAGTCAACTCTCGGTAATTC 57.278 45.455 9.85 0.00 42.48 2.17
1695 2736 7.379750 GGTAATTCCTATATGAGTCGAAGCTT 58.620 38.462 0.00 0.00 0.00 3.74
1882 2927 7.411912 GCACTCTTTTTGAAAGTTTCTTTCACC 60.412 37.037 19.92 0.02 38.05 4.02
1883 2928 6.806739 ACTCTTTTTGAAAGTTTCTTTCACCG 59.193 34.615 19.92 11.22 38.05 4.94
2081 3132 5.010719 TCCGTCAACTCTGTTCTTACTGAAT 59.989 40.000 0.00 0.00 36.99 2.57
2289 3340 5.914085 ATCATCGCAAGCTATGTAAAGTC 57.086 39.130 6.48 0.00 37.18 3.01
2290 3341 4.754322 TCATCGCAAGCTATGTAAAGTCA 58.246 39.130 6.48 0.00 37.18 3.41
2291 3342 5.359756 TCATCGCAAGCTATGTAAAGTCAT 58.640 37.500 6.48 0.00 37.18 3.06
2292 3343 5.234972 TCATCGCAAGCTATGTAAAGTCATG 59.765 40.000 6.48 0.00 37.18 3.07
2293 3344 4.754322 TCGCAAGCTATGTAAAGTCATGA 58.246 39.130 0.00 0.00 37.18 3.07
2294 3345 5.175127 TCGCAAGCTATGTAAAGTCATGAA 58.825 37.500 0.00 0.00 37.18 2.57
2295 3346 5.063438 TCGCAAGCTATGTAAAGTCATGAAC 59.937 40.000 0.00 0.00 37.18 3.18
2296 3347 5.063944 CGCAAGCTATGTAAAGTCATGAACT 59.936 40.000 0.00 0.00 41.10 3.01
2297 3348 6.253746 GCAAGCTATGTAAAGTCATGAACTG 58.746 40.000 0.00 0.00 38.58 3.16
2298 3349 6.128172 GCAAGCTATGTAAAGTCATGAACTGT 60.128 38.462 0.00 0.00 38.58 3.55
2299 3350 7.573843 GCAAGCTATGTAAAGTCATGAACTGTT 60.574 37.037 0.00 0.00 38.58 3.16
2300 3351 7.986085 AGCTATGTAAAGTCATGAACTGTTT 57.014 32.000 0.00 0.00 38.58 2.83
2301 3352 9.502091 AAGCTATGTAAAGTCATGAACTGTTTA 57.498 29.630 0.00 0.00 38.58 2.01
2302 3353 9.502091 AGCTATGTAAAGTCATGAACTGTTTAA 57.498 29.630 0.00 0.00 38.58 1.52
2303 3354 9.760660 GCTATGTAAAGTCATGAACTGTTTAAG 57.239 33.333 0.00 0.00 38.58 1.85
2304 3355 9.760660 CTATGTAAAGTCATGAACTGTTTAAGC 57.239 33.333 0.00 0.00 38.58 3.09
2305 3356 7.801716 TGTAAAGTCATGAACTGTTTAAGCT 57.198 32.000 0.00 0.00 38.58 3.74
2306 3357 8.896320 TGTAAAGTCATGAACTGTTTAAGCTA 57.104 30.769 0.00 0.00 38.58 3.32
2307 3358 8.988934 TGTAAAGTCATGAACTGTTTAAGCTAG 58.011 33.333 0.00 0.00 38.58 3.42
2308 3359 8.989980 GTAAAGTCATGAACTGTTTAAGCTAGT 58.010 33.333 0.00 0.00 38.58 2.57
2309 3360 7.426929 AAGTCATGAACTGTTTAAGCTAGTG 57.573 36.000 0.00 0.00 38.58 2.74
2310 3361 5.934625 AGTCATGAACTGTTTAAGCTAGTGG 59.065 40.000 0.00 0.00 36.65 4.00
2311 3362 5.701290 GTCATGAACTGTTTAAGCTAGTGGT 59.299 40.000 0.00 0.00 0.00 4.16
2312 3363 6.204882 GTCATGAACTGTTTAAGCTAGTGGTT 59.795 38.462 0.00 0.00 37.65 3.67
2404 3483 5.992217 GCCATATAACGATTCAGATATCCCC 59.008 44.000 0.00 0.00 0.00 4.81
2459 3551 2.068837 TGCCGTGTACTAGTTTTCGG 57.931 50.000 20.29 20.29 40.72 4.30
2462 3554 3.005261 TGCCGTGTACTAGTTTTCGGTAA 59.995 43.478 23.11 14.60 40.05 2.85
2465 3557 5.445010 GCCGTGTACTAGTTTTCGGTAAATG 60.445 44.000 23.11 7.10 40.05 2.32
2469 3561 8.437742 CGTGTACTAGTTTTCGGTAAATGAAAT 58.562 33.333 0.00 0.00 35.43 2.17
2744 3842 2.333069 TCTGATTAGAGATGGGCCAGG 58.667 52.381 13.78 0.00 0.00 4.45
2817 3915 0.765510 AGGCCGAGAAAAACCTCACT 59.234 50.000 0.00 0.00 32.86 3.41
2855 3953 2.581354 GGACACATCGAGCCAGCT 59.419 61.111 0.00 0.00 0.00 4.24
3039 4144 1.811266 CTCGTCCACTGCCCATTCG 60.811 63.158 0.00 0.00 0.00 3.34
3058 4163 0.394938 GGCGGTTCCCCAATTTTTGT 59.605 50.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 245 7.256756 TGCCAAAATTTGAAACGATTCATTT 57.743 28.000 9.06 5.20 44.70 2.32
246 248 7.151308 ACTATGCCAAAATTTGAAACGATTCA 58.849 30.769 7.37 3.72 43.70 2.57
259 261 8.720562 GTGCATTTTAGAAAACTATGCCAAAAT 58.279 29.630 0.00 0.00 32.99 1.82
262 264 5.861251 CGTGCATTTTAGAAAACTATGCCAA 59.139 36.000 0.00 0.00 32.99 4.52
263 265 5.182190 TCGTGCATTTTAGAAAACTATGCCA 59.818 36.000 0.00 0.00 32.99 4.92
264 266 5.636837 TCGTGCATTTTAGAAAACTATGCC 58.363 37.500 0.00 0.00 32.99 4.40
265 267 7.740519 ATTCGTGCATTTTAGAAAACTATGC 57.259 32.000 0.00 0.00 33.99 3.14
418 425 9.353999 GAAATATCGACAAATTTAGCCAAAAGT 57.646 29.630 0.00 0.00 0.00 2.66
419 426 9.573133 AGAAATATCGACAAATTTAGCCAAAAG 57.427 29.630 0.00 0.00 0.00 2.27
556 574 5.353394 TTCTCATAAGATTTACAGCCGGT 57.647 39.130 1.90 0.00 0.00 5.28
589 607 2.882137 TCACCCGAGCGATTTTCTTTTT 59.118 40.909 0.00 0.00 0.00 1.94
590 608 2.225727 GTCACCCGAGCGATTTTCTTTT 59.774 45.455 0.00 0.00 0.00 2.27
600 618 3.777925 CTTTGCGTCACCCGAGCG 61.778 66.667 0.00 0.00 39.56 5.03
643 661 9.183368 TGGTGCATGAGTAATGTTTATGATTTA 57.817 29.630 0.00 0.00 38.65 1.40
644 662 8.065473 TGGTGCATGAGTAATGTTTATGATTT 57.935 30.769 0.00 0.00 38.65 2.17
645 663 7.643569 TGGTGCATGAGTAATGTTTATGATT 57.356 32.000 0.00 0.00 38.65 2.57
646 664 7.122501 TGTTGGTGCATGAGTAATGTTTATGAT 59.877 33.333 0.00 0.00 38.65 2.45
647 665 6.432472 TGTTGGTGCATGAGTAATGTTTATGA 59.568 34.615 0.00 0.00 38.65 2.15
648 666 6.619744 TGTTGGTGCATGAGTAATGTTTATG 58.380 36.000 0.00 0.00 38.65 1.90
760 1598 2.373169 TCCAACCAGCAGTGAATTCTCT 59.627 45.455 7.05 5.55 0.00 3.10
852 1775 2.464459 CGGCAGAGATGGGAAACGC 61.464 63.158 0.00 0.00 0.00 4.84
878 1801 3.492829 GCGAAGTATTTGTAGGGAGGAGG 60.493 52.174 0.00 0.00 0.00 4.30
961 1892 0.682209 GTGCTGGGATTGCTGGATGT 60.682 55.000 0.00 0.00 0.00 3.06
1233 2176 4.077184 CGCCGCTGTTCCCTGGTA 62.077 66.667 0.00 0.00 0.00 3.25
1343 2286 2.245438 GAGGAAGTCGGCCCTGAAGG 62.245 65.000 0.00 0.00 39.47 3.46
1345 2288 2.291043 GGAGGAAGTCGGCCCTGAA 61.291 63.158 0.00 0.00 31.84 3.02
1354 2297 1.004891 AGGGGGATGGGAGGAAGTC 59.995 63.158 0.00 0.00 0.00 3.01
1376 2319 1.448540 CGGGAGCAGCTGTAGTTGG 60.449 63.158 16.64 0.00 0.00 3.77
1384 2327 3.760035 CACGTACCGGGAGCAGCT 61.760 66.667 6.32 0.00 28.17 4.24
1521 2524 8.039603 ACGAAGCAAATTGAGTGAATATACAA 57.960 30.769 0.00 0.00 0.00 2.41
1536 2539 7.667043 TTTCAATACAGACTACGAAGCAAAT 57.333 32.000 0.00 0.00 0.00 2.32
1572 2579 5.175859 CGCCCTCTGTTTCTAAATGTAAGA 58.824 41.667 0.00 0.00 0.00 2.10
1577 2584 5.175859 TCTTACGCCCTCTGTTTCTAAATG 58.824 41.667 0.00 0.00 0.00 2.32
1677 2718 6.870965 AGCAAATAAGCTTCGACTCATATAGG 59.129 38.462 0.00 0.00 43.70 2.57
1742 2783 6.463360 TGCCAAAAACCTTCTGATATTTTCC 58.537 36.000 0.00 0.00 0.00 3.13
1743 2784 8.552083 AATGCCAAAAACCTTCTGATATTTTC 57.448 30.769 0.00 0.00 0.00 2.29
1882 2927 7.029563 AGCTTTCATCAAAAGTAAATTAGGCG 58.970 34.615 0.09 0.00 45.23 5.52
1883 2928 7.489435 GGAGCTTTCATCAAAAGTAAATTAGGC 59.511 37.037 0.00 0.00 45.23 3.93
1999 3050 6.569179 AGGCGTGAACTGTACATTTAAATT 57.431 33.333 0.00 0.00 0.00 1.82
2081 3132 6.009589 TCACCAGATCCTGCAAAGAAATTAA 58.990 36.000 0.00 0.00 0.00 1.40
2289 3340 6.204688 TCAACCACTAGCTTAAACAGTTCATG 59.795 38.462 0.00 0.00 0.00 3.07
2290 3341 6.296026 TCAACCACTAGCTTAAACAGTTCAT 58.704 36.000 0.00 0.00 0.00 2.57
2291 3342 5.676552 TCAACCACTAGCTTAAACAGTTCA 58.323 37.500 0.00 0.00 0.00 3.18
2292 3343 6.603095 CATCAACCACTAGCTTAAACAGTTC 58.397 40.000 0.00 0.00 0.00 3.01
2293 3344 5.048713 GCATCAACCACTAGCTTAAACAGTT 60.049 40.000 0.00 0.00 0.00 3.16
2294 3345 4.455877 GCATCAACCACTAGCTTAAACAGT 59.544 41.667 0.00 0.00 0.00 3.55
2295 3346 4.142600 GGCATCAACCACTAGCTTAAACAG 60.143 45.833 0.00 0.00 0.00 3.16
2296 3347 3.756434 GGCATCAACCACTAGCTTAAACA 59.244 43.478 0.00 0.00 0.00 2.83
2297 3348 3.756434 TGGCATCAACCACTAGCTTAAAC 59.244 43.478 0.00 0.00 33.75 2.01
2298 3349 4.027674 TGGCATCAACCACTAGCTTAAA 57.972 40.909 0.00 0.00 33.75 1.52
2299 3350 3.712016 TGGCATCAACCACTAGCTTAA 57.288 42.857 0.00 0.00 33.75 1.85
2300 3351 3.343617 GTTGGCATCAACCACTAGCTTA 58.656 45.455 0.00 0.00 45.50 3.09
2301 3352 2.162681 GTTGGCATCAACCACTAGCTT 58.837 47.619 0.00 0.00 45.50 3.74
2302 3353 1.826385 GTTGGCATCAACCACTAGCT 58.174 50.000 0.00 0.00 45.50 3.32
2311 3362 3.554934 AGTGAAGTCAAGTTGGCATCAA 58.445 40.909 16.27 0.00 0.00 2.57
2312 3363 3.213206 AGTGAAGTCAAGTTGGCATCA 57.787 42.857 11.14 11.14 0.00 3.07
2415 3494 9.260002 CATTCATTTAGCACACTTTTTAAACCT 57.740 29.630 0.00 0.00 0.00 3.50
2416 3495 8.009409 GCATTCATTTAGCACACTTTTTAAACC 58.991 33.333 0.00 0.00 0.00 3.27
2417 3496 8.009409 GGCATTCATTTAGCACACTTTTTAAAC 58.991 33.333 0.00 0.00 0.00 2.01
2419 3498 6.364706 CGGCATTCATTTAGCACACTTTTTAA 59.635 34.615 0.00 0.00 0.00 1.52
2420 3499 5.861251 CGGCATTCATTTAGCACACTTTTTA 59.139 36.000 0.00 0.00 0.00 1.52
2462 3554 9.579932 AGAAAGAGGAGTTTAGTTGATTTCATT 57.420 29.630 0.00 0.00 0.00 2.57
2469 3561 8.840321 CATCAAAAGAAAGAGGAGTTTAGTTGA 58.160 33.333 0.00 0.00 0.00 3.18
2535 3627 4.696402 ACGAAAACACAGTTTACAGTCCAA 59.304 37.500 0.00 0.00 0.00 3.53
2579 3677 0.608035 GACCAACCAGGCCAAATCGA 60.608 55.000 5.01 0.00 43.14 3.59
2744 3842 9.613428 AGCTATTGGGCTTTTATTTTATTTTCC 57.387 29.630 0.00 0.00 39.86 3.13
2817 3915 3.161450 CGGCTAGGGGCTGGCTAA 61.161 66.667 0.00 0.00 43.23 3.09
2855 3953 3.982316 TAGCGACGGGAAGCGAGGA 62.982 63.158 0.00 0.00 38.61 3.71
2976 4081 0.319405 GGATTGTTGCTGGCTTGCTT 59.681 50.000 4.89 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.