Multiple sequence alignment - TraesCS7D01G110400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G110400 chr7D 100.000 7154 0 0 1 7154 66601617 66594464 0.000000e+00 13212.0
1 TraesCS7D01G110400 chr7B 92.359 2866 133 44 3699 6529 8522433 8519619 0.000000e+00 4000.0
2 TraesCS7D01G110400 chr7B 89.465 2411 111 54 96 2471 8526890 8524588 0.000000e+00 2913.0
3 TraesCS7D01G110400 chr7B 91.513 707 39 11 3002 3702 8523380 8522689 0.000000e+00 953.0
4 TraesCS7D01G110400 chr7B 97.468 395 10 0 2463 2857 8523779 8523385 0.000000e+00 675.0
5 TraesCS7D01G110400 chr7B 89.286 168 12 2 6453 6616 8517743 8517578 9.410000e-49 206.0
6 TraesCS7D01G110400 chr7B 97.368 76 2 0 5637 5712 8515447 8515372 5.820000e-26 130.0
7 TraesCS7D01G110400 chr7B 86.420 81 5 4 6672 6752 8519026 8518952 4.600000e-12 84.2
8 TraesCS7D01G110400 chr7A 93.986 2411 107 19 3375 5762 74408090 74410485 0.000000e+00 3615.0
9 TraesCS7D01G110400 chr7A 90.906 2540 103 50 826 3335 74405644 74408085 0.000000e+00 3293.0
10 TraesCS7D01G110400 chr7A 91.280 883 52 13 5751 6614 74410614 74411490 0.000000e+00 1181.0
11 TraesCS7D01G110400 chr7A 87.573 853 81 13 5577 6412 74416081 74416925 0.000000e+00 965.0
12 TraesCS7D01G110400 chr7A 88.679 742 57 14 5634 6369 74414842 74415562 0.000000e+00 880.0
13 TraesCS7D01G110400 chr7A 91.273 550 20 12 92 634 74404753 74405281 0.000000e+00 725.0
14 TraesCS7D01G110400 chr7A 91.758 364 29 1 6792 7154 646581204 646580841 8.280000e-139 505.0
15 TraesCS7D01G110400 chr7A 92.683 287 21 0 3690 3976 74438501 74438787 1.440000e-111 414.0
16 TraesCS7D01G110400 chr7A 88.415 164 15 3 6453 6614 74413091 74413252 2.040000e-45 195.0
17 TraesCS7D01G110400 chr7A 82.587 201 20 4 6423 6614 74422276 74422470 5.740000e-36 163.0
18 TraesCS7D01G110400 chr4D 93.611 360 21 2 6791 7148 210460221 210460580 2.940000e-148 536.0
19 TraesCS7D01G110400 chr1D 92.857 364 25 1 6791 7154 299760908 299760546 1.770000e-145 527.0
20 TraesCS7D01G110400 chr1D 93.075 361 22 3 6794 7154 282135183 282134826 6.360000e-145 525.0
21 TraesCS7D01G110400 chr1D 92.308 364 27 1 6792 7154 365895911 365896274 3.830000e-142 516.0
22 TraesCS7D01G110400 chr5D 93.948 347 21 0 6792 7138 80696757 80697103 6.360000e-145 525.0
23 TraesCS7D01G110400 chr6D 92.758 359 26 0 6794 7152 192187982 192188340 2.960000e-143 520.0
24 TraesCS7D01G110400 chr6D 91.304 368 30 2 6788 7154 427314842 427315208 1.070000e-137 501.0
25 TraesCS7D01G110400 chr1A 91.967 361 28 1 6794 7154 329182955 329182596 8.280000e-139 505.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G110400 chr7D 66594464 66601617 7153 True 13212.000000 13212 100.000000 1 7154 1 chr7D.!!$R1 7153
1 TraesCS7D01G110400 chr7B 8515372 8526890 11518 True 1280.171429 4000 91.982714 96 6752 7 chr7B.!!$R1 6656
2 TraesCS7D01G110400 chr7A 74404753 74416925 12172 False 1550.571429 3615 90.301714 92 6614 7 chr7A.!!$F3 6522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.043907 CGTGTGCGCGTTCATATGAG 60.044 55.000 8.43 0.0 0.00 2.90 F
307 309 0.335361 GACTCCCACTCCTACTCCCA 59.665 60.000 0.00 0.0 0.00 4.37 F
1369 1585 0.108138 CTGGTAGGTTCTTCGCTGGG 60.108 60.000 0.00 0.0 0.00 4.45 F
2172 2404 1.421268 TCTGCCAAGACAATGACCAGT 59.579 47.619 0.00 0.0 0.00 4.00 F
3756 5078 0.458889 CCATTTGCACTCCATTGGCG 60.459 55.000 0.00 0.0 0.00 5.69 F
4948 6291 0.247460 TCTTGCCATCTCTGACGTGG 59.753 55.000 0.00 0.0 36.09 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1337 0.326264 AAAATCAGAGAGCAGGGCGT 59.674 50.000 0.00 0.00 0.00 5.68 R
2109 2341 0.403271 ATCTGGCTGCAACTTCCACT 59.597 50.000 0.50 0.00 0.00 4.00 R
2402 2635 1.133792 CACACTTGAAACCCTCCCTGT 60.134 52.381 0.00 0.00 0.00 4.00 R
4131 5454 0.390866 ATGAGCACGACTTCTGCAGG 60.391 55.000 15.13 0.36 37.08 4.85 R
5020 6363 0.533085 GGCGGCTAGATTGGGACTTC 60.533 60.000 0.00 0.00 0.00 3.01 R
6642 8650 0.036164 CACCAACCATCCCGTCAAGA 59.964 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.159298 GTGCTCACATGGGTAGGTG 57.841 57.895 0.00 0.00 39.83 4.00
19 20 0.324943 GTGCTCACATGGGTAGGTGT 59.675 55.000 0.00 0.00 39.49 4.16
20 21 0.324614 TGCTCACATGGGTAGGTGTG 59.675 55.000 0.00 0.00 45.37 3.82
21 22 1.026718 GCTCACATGGGTAGGTGTGC 61.027 60.000 0.00 0.00 46.22 4.57
22 23 0.740868 CTCACATGGGTAGGTGTGCG 60.741 60.000 0.00 0.00 44.05 5.34
23 24 1.003839 CACATGGGTAGGTGTGCGT 60.004 57.895 0.00 0.00 39.23 5.24
24 25 1.003839 ACATGGGTAGGTGTGCGTG 60.004 57.895 0.00 0.00 0.00 5.34
25 26 1.003839 CATGGGTAGGTGTGCGTGT 60.004 57.895 0.00 0.00 0.00 4.49
26 27 1.003839 ATGGGTAGGTGTGCGTGTG 60.004 57.895 0.00 0.00 0.00 3.82
27 28 3.047877 GGGTAGGTGTGCGTGTGC 61.048 66.667 0.00 0.00 43.20 4.57
38 39 4.550965 CGTGTGCGCGTTCATATG 57.449 55.556 8.43 0.00 0.00 1.78
39 40 1.995228 CGTGTGCGCGTTCATATGA 59.005 52.632 8.43 0.00 0.00 2.15
40 41 0.043907 CGTGTGCGCGTTCATATGAG 60.044 55.000 8.43 0.00 0.00 2.90
41 42 0.999406 GTGTGCGCGTTCATATGAGT 59.001 50.000 8.43 0.00 0.00 3.41
42 43 2.190161 GTGTGCGCGTTCATATGAGTA 58.810 47.619 8.43 0.00 0.00 2.59
43 44 2.601314 GTGTGCGCGTTCATATGAGTAA 59.399 45.455 8.43 0.00 0.00 2.24
44 45 2.857748 TGTGCGCGTTCATATGAGTAAG 59.142 45.455 8.43 1.27 0.00 2.34
45 46 2.858344 GTGCGCGTTCATATGAGTAAGT 59.142 45.455 8.43 0.00 0.00 2.24
46 47 2.857748 TGCGCGTTCATATGAGTAAGTG 59.142 45.455 8.43 2.84 0.00 3.16
47 48 2.858344 GCGCGTTCATATGAGTAAGTGT 59.142 45.455 8.43 0.00 0.00 3.55
48 49 4.039703 GCGCGTTCATATGAGTAAGTGTA 58.960 43.478 8.43 0.00 0.00 2.90
49 50 4.680110 GCGCGTTCATATGAGTAAGTGTAT 59.320 41.667 8.43 0.00 0.00 2.29
50 51 5.387444 GCGCGTTCATATGAGTAAGTGTATG 60.387 44.000 8.43 0.00 0.00 2.39
51 52 5.387444 CGCGTTCATATGAGTAAGTGTATGC 60.387 44.000 5.39 4.89 0.00 3.14
52 53 5.387444 GCGTTCATATGAGTAAGTGTATGCG 60.387 44.000 5.39 0.20 0.00 4.73
53 54 5.387444 CGTTCATATGAGTAAGTGTATGCGC 60.387 44.000 5.39 0.00 0.00 6.09
54 55 5.195001 TCATATGAGTAAGTGTATGCGCA 57.805 39.130 14.96 14.96 0.00 6.09
55 56 5.783111 TCATATGAGTAAGTGTATGCGCAT 58.217 37.500 28.23 28.23 31.28 4.73
56 57 6.919721 TCATATGAGTAAGTGTATGCGCATA 58.080 36.000 25.78 25.78 33.74 3.14
57 58 7.547227 TCATATGAGTAAGTGTATGCGCATAT 58.453 34.615 31.14 18.45 38.32 1.78
58 59 7.489113 TCATATGAGTAAGTGTATGCGCATATG 59.511 37.037 31.14 20.76 46.79 1.78
59 60 4.944048 TGAGTAAGTGTATGCGCATATGT 58.056 39.130 31.14 18.65 0.00 2.29
60 61 6.079424 TGAGTAAGTGTATGCGCATATGTA 57.921 37.500 31.14 18.33 0.00 2.29
61 62 6.687604 TGAGTAAGTGTATGCGCATATGTAT 58.312 36.000 31.14 19.96 0.00 2.29
62 63 6.586082 TGAGTAAGTGTATGCGCATATGTATG 59.414 38.462 31.14 0.00 36.78 2.39
63 64 6.687604 AGTAAGTGTATGCGCATATGTATGA 58.312 36.000 31.14 13.74 35.75 2.15
64 65 6.808704 AGTAAGTGTATGCGCATATGTATGAG 59.191 38.462 31.14 2.11 35.75 2.90
65 66 5.139435 AGTGTATGCGCATATGTATGAGT 57.861 39.130 31.14 12.18 36.14 3.41
66 67 4.925646 AGTGTATGCGCATATGTATGAGTG 59.074 41.667 31.14 0.00 36.14 3.51
67 68 4.923281 GTGTATGCGCATATGTATGAGTGA 59.077 41.667 31.14 5.12 36.14 3.41
68 69 5.578336 GTGTATGCGCATATGTATGAGTGAT 59.422 40.000 31.14 4.41 36.14 3.06
69 70 6.091305 GTGTATGCGCATATGTATGAGTGATT 59.909 38.462 31.14 3.70 36.14 2.57
70 71 4.996062 TGCGCATATGTATGAGTGATTG 57.004 40.909 5.66 0.00 36.14 2.67
71 72 3.187022 TGCGCATATGTATGAGTGATTGC 59.813 43.478 5.66 0.00 36.14 3.56
72 73 3.982437 CGCATATGTATGAGTGATTGCG 58.018 45.455 4.29 0.00 44.39 4.85
73 74 3.429881 CGCATATGTATGAGTGATTGCGT 59.570 43.478 4.29 0.00 44.64 5.24
74 75 4.621034 CGCATATGTATGAGTGATTGCGTA 59.379 41.667 4.29 0.00 44.64 4.42
75 76 5.289434 CGCATATGTATGAGTGATTGCGTAT 59.711 40.000 4.29 0.00 44.64 3.06
76 77 6.472680 GCATATGTATGAGTGATTGCGTATG 58.527 40.000 4.29 0.00 35.75 2.39
77 78 6.091305 GCATATGTATGAGTGATTGCGTATGT 59.909 38.462 4.29 0.00 35.75 2.29
78 79 7.275560 GCATATGTATGAGTGATTGCGTATGTA 59.724 37.037 4.29 0.00 35.75 2.29
79 80 8.587111 CATATGTATGAGTGATTGCGTATGTAC 58.413 37.037 0.00 0.00 35.75 2.90
80 81 6.144078 TGTATGAGTGATTGCGTATGTACT 57.856 37.500 0.00 0.00 0.00 2.73
81 82 5.977129 TGTATGAGTGATTGCGTATGTACTG 59.023 40.000 0.00 0.00 0.00 2.74
82 83 4.450082 TGAGTGATTGCGTATGTACTGT 57.550 40.909 0.00 0.00 0.00 3.55
83 84 5.570234 TGAGTGATTGCGTATGTACTGTA 57.430 39.130 0.00 0.00 0.00 2.74
84 85 6.144078 TGAGTGATTGCGTATGTACTGTAT 57.856 37.500 0.00 0.00 0.00 2.29
85 86 6.569780 TGAGTGATTGCGTATGTACTGTATT 58.430 36.000 0.00 0.00 0.00 1.89
86 87 7.039270 TGAGTGATTGCGTATGTACTGTATTT 58.961 34.615 0.00 0.00 0.00 1.40
87 88 8.192110 TGAGTGATTGCGTATGTACTGTATTTA 58.808 33.333 0.00 0.00 0.00 1.40
88 89 8.936070 AGTGATTGCGTATGTACTGTATTTAA 57.064 30.769 0.00 0.00 0.00 1.52
89 90 9.373603 AGTGATTGCGTATGTACTGTATTTAAA 57.626 29.630 0.00 0.00 0.00 1.52
90 91 9.976255 GTGATTGCGTATGTACTGTATTTAAAA 57.024 29.630 0.00 0.00 0.00 1.52
164 166 5.277974 CGGTTCTCATGTGTTCTGAACATTT 60.278 40.000 24.44 13.15 44.35 2.32
177 179 2.025793 TGAACATTTCTATCCGGGGCAA 60.026 45.455 0.00 0.00 0.00 4.52
186 188 1.250840 ATCCGGGGCAAGTTTTCAGC 61.251 55.000 0.00 0.00 0.00 4.26
223 225 2.651382 TCAATGCCCTCATCATCCAG 57.349 50.000 0.00 0.00 31.27 3.86
224 226 1.144298 TCAATGCCCTCATCATCCAGG 59.856 52.381 0.00 0.00 31.27 4.45
225 227 1.144298 CAATGCCCTCATCATCCAGGA 59.856 52.381 0.00 0.00 31.27 3.86
226 228 1.526315 ATGCCCTCATCATCCAGGAA 58.474 50.000 0.00 0.00 30.32 3.36
235 237 3.117776 TCATCATCCAGGAACCAGGATTG 60.118 47.826 13.82 11.31 41.01 2.67
267 269 1.973138 ACACGAGATTAACACGACGG 58.027 50.000 0.00 0.00 36.51 4.79
303 305 0.681564 CGCAGACTCCCACTCCTACT 60.682 60.000 0.00 0.00 0.00 2.57
304 306 1.107945 GCAGACTCCCACTCCTACTC 58.892 60.000 0.00 0.00 0.00 2.59
306 308 0.632294 AGACTCCCACTCCTACTCCC 59.368 60.000 0.00 0.00 0.00 4.30
307 309 0.335361 GACTCCCACTCCTACTCCCA 59.665 60.000 0.00 0.00 0.00 4.37
309 311 0.688087 CTCCCACTCCTACTCCCACC 60.688 65.000 0.00 0.00 0.00 4.61
310 312 2.058595 CCCACTCCTACTCCCACCG 61.059 68.421 0.00 0.00 0.00 4.94
311 313 2.722201 CCACTCCTACTCCCACCGC 61.722 68.421 0.00 0.00 0.00 5.68
312 314 1.982395 CACTCCTACTCCCACCGCA 60.982 63.158 0.00 0.00 0.00 5.69
313 315 1.001760 ACTCCTACTCCCACCGCAT 59.998 57.895 0.00 0.00 0.00 4.73
314 316 1.043673 ACTCCTACTCCCACCGCATC 61.044 60.000 0.00 0.00 0.00 3.91
315 317 2.076622 CTCCTACTCCCACCGCATCG 62.077 65.000 0.00 0.00 0.00 3.84
454 456 4.885270 CCAACGCCACCACCACCA 62.885 66.667 0.00 0.00 0.00 4.17
455 457 2.597217 CAACGCCACCACCACCAT 60.597 61.111 0.00 0.00 0.00 3.55
460 462 2.941025 CCACCACCACCATCCCCT 60.941 66.667 0.00 0.00 0.00 4.79
571 576 4.147587 GCTGCCACCCATCCCCAT 62.148 66.667 0.00 0.00 0.00 4.00
623 630 4.935495 CGGCACCAGCACCACTGT 62.935 66.667 0.00 0.00 45.68 3.55
630 637 0.537188 CCAGCACCACTGTAGTAGGG 59.463 60.000 0.00 0.00 45.68 3.53
642 649 4.893601 GTAGGGGGAAGAGCGCGC 62.894 72.222 26.66 26.66 41.84 6.86
706 723 1.015609 ATAGGGGGAAAAGTTGGGGG 58.984 55.000 0.00 0.00 0.00 5.40
852 1041 2.606519 TTCCGTCTCCACCCCCAG 60.607 66.667 0.00 0.00 0.00 4.45
941 1151 2.476199 CTCTCAAGTCCCCATCCTCTT 58.524 52.381 0.00 0.00 0.00 2.85
954 1164 1.153568 CCTCTTCTCAATCGCCGCA 60.154 57.895 0.00 0.00 0.00 5.69
1060 1276 1.400530 CGTGTCAGGTATCCCCTCCC 61.401 65.000 0.00 0.00 43.86 4.30
1093 1309 2.921754 CTCGTGTTGGTAGGATCGTTTC 59.078 50.000 0.00 0.00 0.00 2.78
1099 1315 1.205417 TGGTAGGATCGTTTCCCGTTC 59.795 52.381 0.00 0.00 46.81 3.95
1121 1337 3.520290 ATTACTCTGGCGAAATCACGA 57.480 42.857 0.00 0.00 35.09 4.35
1133 1349 2.564553 AATCACGACGCCCTGCTCTC 62.565 60.000 0.00 0.00 0.00 3.20
1134 1350 3.753434 CACGACGCCCTGCTCTCT 61.753 66.667 0.00 0.00 0.00 3.10
1142 1358 1.406614 CGCCCTGCTCTCTGATTTTCT 60.407 52.381 0.00 0.00 0.00 2.52
1145 1361 1.932511 CCTGCTCTCTGATTTTCTCGC 59.067 52.381 0.00 0.00 0.00 5.03
1151 1367 2.005451 CTCTGATTTTCTCGCTGGTGG 58.995 52.381 0.00 0.00 0.00 4.61
1184 1400 2.896801 CTGGTGTTGCAGTGACCGC 61.897 63.158 0.00 0.00 31.87 5.68
1361 1577 3.442076 CCTACTTCCACTGGTAGGTTCT 58.558 50.000 6.65 0.00 45.83 3.01
1362 1578 3.838903 CCTACTTCCACTGGTAGGTTCTT 59.161 47.826 6.65 0.00 45.83 2.52
1363 1579 4.081586 CCTACTTCCACTGGTAGGTTCTTC 60.082 50.000 6.65 0.00 45.83 2.87
1365 1581 0.606604 TCCACTGGTAGGTTCTTCGC 59.393 55.000 0.00 0.00 0.00 4.70
1366 1582 0.608640 CCACTGGTAGGTTCTTCGCT 59.391 55.000 0.00 0.00 0.00 4.93
1368 1584 0.608640 ACTGGTAGGTTCTTCGCTGG 59.391 55.000 0.00 0.00 0.00 4.85
1369 1585 0.108138 CTGGTAGGTTCTTCGCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
1423 1642 7.525688 ACGATTGTGTTGTACTGATAATCTG 57.474 36.000 0.00 0.00 0.00 2.90
1426 1645 9.463443 CGATTGTGTTGTACTGATAATCTGATA 57.537 33.333 0.00 0.00 0.00 2.15
1441 1660 3.861840 TCTGATACTAACTGTTGCCTGC 58.138 45.455 2.69 0.00 0.00 4.85
1541 1760 3.481453 AGGGAGTTTTGTTCTCTGCTTC 58.519 45.455 0.00 0.00 33.06 3.86
1575 1794 6.092807 GTGTCTGTCATCTGGGTTTTATCTTC 59.907 42.308 0.00 0.00 0.00 2.87
1750 1969 3.375922 GCGCTTACCTGGCTAAAATGTTA 59.624 43.478 0.00 0.00 0.00 2.41
1787 2006 5.334105 CCGGCATGTTCATAAGCACTATAAC 60.334 44.000 0.00 0.00 0.00 1.89
1934 2166 6.607689 GTGTTGCACAAGTATAGTTGCAATA 58.392 36.000 18.19 14.39 42.84 1.90
2109 2341 4.921515 GTGTTTAGCACGTATGAGTTCTCA 59.078 41.667 4.96 4.96 38.45 3.27
2172 2404 1.421268 TCTGCCAAGACAATGACCAGT 59.579 47.619 0.00 0.00 0.00 4.00
2260 2492 6.386342 TCCATGGATGAGAGAAGATCTTTTCT 59.614 38.462 24.42 24.42 38.84 2.52
2289 2521 8.282256 AGGGTATGCTTACTTCCATCTTTTTAT 58.718 33.333 9.39 0.00 0.00 1.40
2402 2635 6.859112 AGGATCAGCTCTTAGAGTTGTTAA 57.141 37.500 22.01 7.11 40.79 2.01
2475 2708 3.378339 GTCGATCGGGGTATTAGTGTTG 58.622 50.000 16.41 0.00 0.00 3.33
2503 3553 9.760077 GGCTTGAGCTTAACTATTAGTTATACA 57.240 33.333 15.27 10.78 39.17 2.29
2648 3698 3.201930 TCTGTCAGAGAGATGCTAGAGGT 59.798 47.826 0.00 0.00 0.00 3.85
2795 3845 4.456911 CAGGTATGCAAACTTCTGTGACAT 59.543 41.667 0.00 0.00 0.00 3.06
2820 3870 3.009723 TGCTGTCTATGCCTTTACTTGC 58.990 45.455 0.00 0.00 0.00 4.01
2837 3887 8.758633 TTTACTTGCTTACTCTCTGTTGTATC 57.241 34.615 0.00 0.00 0.00 2.24
2840 3890 6.209589 ACTTGCTTACTCTCTGTTGTATCTCA 59.790 38.462 0.00 0.00 0.00 3.27
2877 3928 3.924144 TGTAAATGCAATTGGCTTGACC 58.076 40.909 7.72 0.00 45.15 4.02
2925 3978 9.979578 TTTGTAAGAAATTATGCAATCACTTGT 57.020 25.926 0.00 0.00 34.69 3.16
2930 3983 6.366877 AGAAATTATGCAATCACTTGTTGTGC 59.633 34.615 0.00 0.00 45.81 4.57
2937 3990 4.457810 CAATCACTTGTTGTGCTCGTAAG 58.542 43.478 0.00 0.00 45.81 2.34
2940 3993 3.308595 TCACTTGTTGTGCTCGTAAGTTG 59.691 43.478 0.00 0.00 45.81 3.16
2957 4010 5.649782 AAGTTGGCAGTTTGATCCATTAG 57.350 39.130 0.00 0.00 0.00 1.73
3040 4093 6.151648 CCCACTATTTTCAGTCAATGTGTGAT 59.848 38.462 0.00 0.00 38.90 3.06
3055 4108 4.568956 TGTGTGATCATCGAGTTGTTGAT 58.431 39.130 0.00 3.92 39.24 2.57
3070 4123 7.485277 CGAGTTGTTGATTAAGGTGTACTCTAG 59.515 40.741 0.00 0.00 0.00 2.43
3199 4252 3.276857 CAGAGAACCATGATGGACTTGG 58.723 50.000 20.11 9.05 45.63 3.61
3218 4271 7.122204 GGACTTGGCCAATTAAACTTATGTACT 59.878 37.037 20.85 0.00 0.00 2.73
3339 4396 4.128643 CAAAGTGAAATGGCCAAATGTGT 58.871 39.130 10.96 0.00 0.00 3.72
3366 4424 5.744666 TGTGCAACCACTCTTTACTAAAC 57.255 39.130 0.00 0.00 42.54 2.01
3393 4451 4.874966 TGTGCTTTTTCAAAATGAAGTGGG 59.125 37.500 0.00 0.00 37.70 4.61
3461 4519 5.181245 ACTTCAACATTCGGTCATTAAGTGG 59.819 40.000 0.00 0.00 0.00 4.00
3514 4574 3.061848 CGGTGTGCCATTGTCCCC 61.062 66.667 0.00 0.00 34.09 4.81
3515 4575 2.440599 GGTGTGCCATTGTCCCCT 59.559 61.111 0.00 0.00 34.09 4.79
3528 4588 0.837940 GTCCCCTGGGTCCTTGTATC 59.162 60.000 12.71 0.00 36.47 2.24
3531 4591 1.285280 CCCTGGGTCCTTGTATCACA 58.715 55.000 3.97 0.00 0.00 3.58
3741 5063 8.961294 TTCAATTCATGAAAACTGTTTCCATT 57.039 26.923 13.09 0.00 44.94 3.16
3756 5078 0.458889 CCATTTGCACTCCATTGGCG 60.459 55.000 0.00 0.00 0.00 5.69
3772 5094 1.132640 GCGAACGTGCAAGATCCAC 59.867 57.895 6.65 0.00 34.15 4.02
3791 5113 4.286549 TCCACAATTCCATTCTTTGGCATT 59.713 37.500 0.00 0.00 46.01 3.56
3876 5198 9.646522 ACCATATTACATTTCATTTCCTAAGCT 57.353 29.630 0.00 0.00 0.00 3.74
3923 5245 5.188327 TCTTCCTGCTGTAATGAGTATCG 57.812 43.478 0.00 0.00 38.61 2.92
3926 5248 4.682787 TCCTGCTGTAATGAGTATCGTTG 58.317 43.478 0.00 0.00 45.50 4.10
4109 5431 3.430895 GGTACGAAAACATGAAAGCTCGA 59.569 43.478 0.00 0.00 0.00 4.04
4131 5454 5.107065 CGAACCTTTCTCCTTTATCACACAC 60.107 44.000 0.00 0.00 0.00 3.82
4265 5588 8.677300 TCAGACTTCCATGAATTAAATAGCAAC 58.323 33.333 0.00 0.00 0.00 4.17
4391 5717 3.567585 TCATTCAACAATGCTCGTCCAAA 59.432 39.130 0.00 0.00 39.56 3.28
4473 5800 9.511272 TCCTTCCTGAAACCTAAACTTTATTAC 57.489 33.333 0.00 0.00 0.00 1.89
4486 5813 7.597288 AAACTTTATTACCAGGAAGCTTTGT 57.403 32.000 0.00 0.00 0.00 2.83
4849 6192 7.014134 TGGAAAAATAATGAAGCTCTGAACACA 59.986 33.333 0.00 0.00 0.00 3.72
4942 6285 8.442632 TCTTTATTGTTATCTTGCCATCTCTG 57.557 34.615 0.00 0.00 0.00 3.35
4948 6291 0.247460 TCTTGCCATCTCTGACGTGG 59.753 55.000 0.00 0.00 36.09 4.94
4996 6339 7.724061 ACTGTTGGTAAACTGATGGAAACTTAT 59.276 33.333 2.98 0.00 38.30 1.73
5020 6363 2.602738 TTGCATTGCAAAACTGCGG 58.397 47.368 21.24 0.00 45.96 5.69
5038 6381 0.533085 GGAAGTCCCAATCTAGCCGC 60.533 60.000 0.00 0.00 34.14 6.53
5065 6408 6.122277 CAGAATATCCCTAAAGAAGGTTGCA 58.878 40.000 0.00 0.00 44.90 4.08
5067 6410 5.975988 ATATCCCTAAAGAAGGTTGCAGA 57.024 39.130 0.00 0.00 44.90 4.26
5086 6429 4.798574 CAGAGGCAAATTTTACGAAAGCT 58.201 39.130 0.00 0.00 0.00 3.74
5095 6438 7.201266 GCAAATTTTACGAAAGCTGTGAGTATG 60.201 37.037 0.00 0.00 0.00 2.39
5100 6443 2.932614 CGAAAGCTGTGAGTATGGAAGG 59.067 50.000 0.00 0.00 0.00 3.46
5111 6454 4.478317 TGAGTATGGAAGGGGATGAAATGT 59.522 41.667 0.00 0.00 0.00 2.71
5124 6467 6.127253 GGGGATGAAATGTCTGTGATTTGAAT 60.127 38.462 0.00 0.00 0.00 2.57
5208 6552 3.374042 TTTCCTTTGTGTCAGAACCCA 57.626 42.857 0.00 0.00 0.00 4.51
5230 6574 8.768397 ACCCAGAAATAAGTATACATGAGAACA 58.232 33.333 5.50 0.00 0.00 3.18
5247 6591 7.843490 TGAGAACAAGGAATATTAAAGGACG 57.157 36.000 0.00 0.00 0.00 4.79
5305 6650 8.919145 TCTATGGTTTCCAAATTAAGTTGTTGT 58.081 29.630 14.02 0.00 36.95 3.32
5411 6757 9.621629 TCTAAGATTACACTTTTTGTTTCCAGA 57.378 29.630 0.00 0.00 39.91 3.86
5504 6850 9.836864 TCTATGAGCATGCTAAGAAGATTTTTA 57.163 29.630 22.74 0.00 0.00 1.52
5562 6908 1.336240 GGTGGTGCAGCAGAAACAATC 60.336 52.381 20.85 4.48 0.00 2.67
5563 6909 1.337703 GTGGTGCAGCAGAAACAATCA 59.662 47.619 20.85 0.00 0.00 2.57
5575 6921 6.376299 AGCAGAAACAATCAGCAGATCAAATA 59.624 34.615 0.00 0.00 42.63 1.40
5671 7017 8.897752 GTTTGGTCAAGCTCATCTAATTATTCT 58.102 33.333 0.00 0.00 0.00 2.40
5682 7028 9.982651 CTCATCTAATTATTCTTCCCTAAACGA 57.017 33.333 0.00 0.00 0.00 3.85
5705 7051 3.374042 TGTTGTCCCTTCAACCTTTCA 57.626 42.857 7.02 0.00 44.66 2.69
5805 7341 7.119846 ACAAAAGGAAGTATGCTCACATAAGTC 59.880 37.037 0.00 0.00 40.42 3.01
5806 7342 5.939764 AGGAAGTATGCTCACATAAGTCA 57.060 39.130 0.00 0.00 40.42 3.41
5905 7457 3.494626 CCGGTGAATCCATTACGATCTTG 59.505 47.826 0.00 0.00 35.57 3.02
5912 7464 3.963129 TCCATTACGATCTTGGCCTTTT 58.037 40.909 3.32 0.00 0.00 2.27
5915 7467 4.399303 CCATTACGATCTTGGCCTTTTCTT 59.601 41.667 3.32 0.00 0.00 2.52
5945 7497 4.991153 TTAGAGCCTGTCTCATGTACAG 57.009 45.455 18.33 18.33 44.35 2.74
5962 7514 8.757789 TCATGTACAGTTTCTAGTTTTGTAACG 58.242 33.333 0.33 0.00 39.31 3.18
6001 7553 3.643199 TCTTATGTGCTTGTGGCCATA 57.357 42.857 9.72 1.91 40.92 2.74
6063 7615 3.219281 GAGTTGCTTTACCTGGTGGAAA 58.781 45.455 10.23 1.90 37.04 3.13
6084 7636 0.776810 TGGCCTCATTTGGTCTTGGA 59.223 50.000 3.32 0.00 31.91 3.53
6090 7642 3.368739 CCTCATTTGGTCTTGGAATTGCC 60.369 47.826 0.00 0.00 37.10 4.52
6183 7735 3.653352 GGAGGATACAGCCCCTAGATTTT 59.347 47.826 0.00 0.00 41.41 1.82
6184 7736 4.104897 GGAGGATACAGCCCCTAGATTTTT 59.895 45.833 0.00 0.00 41.41 1.94
6195 7747 5.440610 CCCCTAGATTTTTCATGTACAGCT 58.559 41.667 0.33 0.00 0.00 4.24
6216 7768 0.544833 ATGTTGCCCAGGGATTTGCA 60.545 50.000 10.89 0.00 0.00 4.08
6362 7921 6.058833 TGGATGAAACAGTTGCAACTAACTA 58.941 36.000 30.67 16.53 38.78 2.24
6421 7980 5.798132 ACAGAAGTGTGAAGCATAATCAGA 58.202 37.500 0.00 0.00 34.75 3.27
6491 8050 6.881570 TCACATGACACACTAGAATGATCAT 58.118 36.000 1.18 1.18 32.65 2.45
6500 8059 5.846164 ACACTAGAATGATCATGGGTGGATA 59.154 40.000 22.51 6.89 0.00 2.59
6515 8074 3.297830 TGGATACATATTGTCGGAGCG 57.702 47.619 0.00 0.00 46.17 5.03
6516 8075 1.993370 GGATACATATTGTCGGAGCGC 59.007 52.381 0.00 0.00 0.00 5.92
6558 8117 1.561542 CATTTCTACCCCAGCCTCTGT 59.438 52.381 0.00 0.00 0.00 3.41
6589 8543 1.278127 CCGTCCACACTATGTCCCTTT 59.722 52.381 0.00 0.00 0.00 3.11
6620 8574 2.860293 CCGTCAATGGCACGTCAC 59.140 61.111 0.00 0.00 35.39 3.67
6623 8577 1.207593 GTCAATGGCACGTCACTGC 59.792 57.895 0.00 0.00 36.33 4.40
6641 8649 0.537188 GCGGTCTGATCCTTCTTCCA 59.463 55.000 0.00 0.00 0.00 3.53
6642 8650 1.139853 GCGGTCTGATCCTTCTTCCAT 59.860 52.381 0.00 0.00 0.00 3.41
6645 8653 3.133721 CGGTCTGATCCTTCTTCCATCTT 59.866 47.826 0.00 0.00 0.00 2.40
6649 8662 4.118410 CTGATCCTTCTTCCATCTTGACG 58.882 47.826 0.00 0.00 0.00 4.35
6662 8675 0.250727 CTTGACGGGATGGTTGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
6663 8676 0.250553 TTGACGGGATGGTTGGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
6665 8678 2.435938 CGGGATGGTTGGTGTCGG 60.436 66.667 0.00 0.00 0.00 4.79
6667 8680 1.074248 GGGATGGTTGGTGTCGGTT 59.926 57.895 0.00 0.00 0.00 4.44
6668 8681 0.958876 GGGATGGTTGGTGTCGGTTC 60.959 60.000 0.00 0.00 0.00 3.62
6669 8682 0.958876 GGATGGTTGGTGTCGGTTCC 60.959 60.000 0.00 0.00 0.00 3.62
6686 8709 1.302033 CCTGCTCGGCTTTGACTGT 60.302 57.895 0.00 0.00 0.00 3.55
6701 8724 0.035458 ACTGTGCAAGTCACCCTAGC 59.965 55.000 0.00 0.00 45.03 3.42
6702 8725 0.322975 CTGTGCAAGTCACCCTAGCT 59.677 55.000 0.00 0.00 45.03 3.32
6703 8726 0.321671 TGTGCAAGTCACCCTAGCTC 59.678 55.000 0.00 0.00 45.03 4.09
6704 8727 0.737715 GTGCAAGTCACCCTAGCTCG 60.738 60.000 0.00 0.00 39.79 5.03
6706 8729 1.153549 CAAGTCACCCTAGCTCGCC 60.154 63.158 0.00 0.00 0.00 5.54
6707 8730 1.305381 AAGTCACCCTAGCTCGCCT 60.305 57.895 0.00 0.00 0.00 5.52
6708 8731 1.608717 AAGTCACCCTAGCTCGCCTG 61.609 60.000 0.00 0.00 0.00 4.85
6709 8732 2.759973 TCACCCTAGCTCGCCTGG 60.760 66.667 0.00 0.00 0.00 4.45
6710 8733 3.854669 CACCCTAGCTCGCCTGGG 61.855 72.222 13.16 13.16 44.89 4.45
6752 8775 1.846007 TGGCACCTGTTCAACACTTT 58.154 45.000 0.00 0.00 0.00 2.66
6753 8776 2.175202 TGGCACCTGTTCAACACTTTT 58.825 42.857 0.00 0.00 0.00 2.27
6783 11351 5.500645 AAGGAGTTCAACACTTGTTTAGC 57.499 39.130 0.00 0.00 35.01 3.09
6799 11367 4.844420 GCGACAGGCTAAGAGCAT 57.156 55.556 0.21 0.00 44.75 3.79
6800 11368 2.599216 GCGACAGGCTAAGAGCATC 58.401 57.895 0.21 0.00 44.75 3.91
6801 11369 0.103937 GCGACAGGCTAAGAGCATCT 59.896 55.000 0.21 0.00 44.75 2.90
6802 11370 1.867698 GCGACAGGCTAAGAGCATCTC 60.868 57.143 0.21 0.00 44.75 2.75
6845 11413 9.287373 TGTAAAAATACCTAACTTTTGGATCGT 57.713 29.630 0.00 0.00 0.00 3.73
6847 11415 8.631480 AAAAATACCTAACTTTTGGATCGTCT 57.369 30.769 0.00 0.00 0.00 4.18
6848 11416 7.611213 AAATACCTAACTTTTGGATCGTCTG 57.389 36.000 0.00 0.00 0.00 3.51
6850 11418 3.270877 CCTAACTTTTGGATCGTCTGGG 58.729 50.000 0.00 0.00 0.00 4.45
6851 11419 2.200373 AACTTTTGGATCGTCTGGGG 57.800 50.000 0.00 0.00 0.00 4.96
6852 11420 0.322546 ACTTTTGGATCGTCTGGGGC 60.323 55.000 0.00 0.00 0.00 5.80
6853 11421 0.322456 CTTTTGGATCGTCTGGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
6854 11422 0.111446 TTTTGGATCGTCTGGGGCAA 59.889 50.000 0.00 0.00 0.00 4.52
6856 11424 0.111446 TTGGATCGTCTGGGGCAAAA 59.889 50.000 0.00 0.00 0.00 2.44
6857 11425 0.111446 TGGATCGTCTGGGGCAAAAA 59.889 50.000 0.00 0.00 0.00 1.94
6872 11440 3.944871 AAAAACGCTGCTCCAACAG 57.055 47.368 0.00 0.00 40.80 3.16
6874 11442 0.663153 AAAACGCTGCTCCAACAGAC 59.337 50.000 0.00 0.00 40.25 3.51
6875 11443 1.498865 AAACGCTGCTCCAACAGACG 61.499 55.000 0.00 1.84 40.25 4.18
6877 11445 2.031163 GCTGCTCCAACAGACGGT 59.969 61.111 0.00 0.00 40.25 4.83
6879 11447 1.374758 CTGCTCCAACAGACGGTCC 60.375 63.158 4.14 0.00 40.25 4.46
6880 11448 2.099652 CTGCTCCAACAGACGGTCCA 62.100 60.000 4.14 0.00 40.25 4.02
6881 11449 1.296715 GCTCCAACAGACGGTCCAT 59.703 57.895 4.14 0.00 0.00 3.41
6882 11450 0.535335 GCTCCAACAGACGGTCCATA 59.465 55.000 4.14 0.00 0.00 2.74
6885 11453 1.134521 TCCAACAGACGGTCCATATGC 60.135 52.381 4.14 0.00 0.00 3.14
6886 11454 1.406751 CCAACAGACGGTCCATATGCA 60.407 52.381 4.14 0.00 0.00 3.96
6887 11455 2.355197 CAACAGACGGTCCATATGCAA 58.645 47.619 4.14 0.00 0.00 4.08
6888 11456 2.746904 CAACAGACGGTCCATATGCAAA 59.253 45.455 4.14 0.00 0.00 3.68
6889 11457 3.066291 ACAGACGGTCCATATGCAAAA 57.934 42.857 4.14 0.00 0.00 2.44
6906 11474 1.005512 AAAAATTTGGACCGCGGCC 60.006 52.632 28.58 26.88 0.00 6.13
6907 11475 1.468506 AAAAATTTGGACCGCGGCCT 61.469 50.000 30.01 13.68 0.00 5.19
6908 11476 1.873270 AAAATTTGGACCGCGGCCTC 61.873 55.000 30.01 20.61 0.00 4.70
6919 11487 2.782222 GCGGCCTCCTCGTGATGTA 61.782 63.158 0.00 0.00 0.00 2.29
6920 11488 1.813859 CGGCCTCCTCGTGATGTAA 59.186 57.895 0.00 0.00 0.00 2.41
6921 11489 0.174845 CGGCCTCCTCGTGATGTAAA 59.825 55.000 0.00 0.00 0.00 2.01
6935 13085 5.539582 TGATGTAAAATACAACACCTCGC 57.460 39.130 0.00 0.00 42.76 5.03
6936 13086 4.998033 TGATGTAAAATACAACACCTCGCA 59.002 37.500 0.00 0.00 42.76 5.10
6937 13087 5.121611 TGATGTAAAATACAACACCTCGCAG 59.878 40.000 0.00 0.00 42.76 5.18
6939 13089 3.896648 AAAATACAACACCTCGCAGTG 57.103 42.857 3.43 3.43 43.65 3.66
6942 13092 0.179070 TACAACACCTCGCAGTGCAA 60.179 50.000 16.83 0.00 41.67 4.08
6943 13093 1.029408 ACAACACCTCGCAGTGCAAA 61.029 50.000 16.83 1.04 41.67 3.68
6945 13095 1.032014 AACACCTCGCAGTGCAAATT 58.968 45.000 16.83 0.00 41.67 1.82
6946 13096 1.032014 ACACCTCGCAGTGCAAATTT 58.968 45.000 16.83 0.00 41.67 1.82
6948 13098 2.819608 ACACCTCGCAGTGCAAATTTAT 59.180 40.909 16.83 0.00 41.67 1.40
6949 13099 4.006989 ACACCTCGCAGTGCAAATTTATA 58.993 39.130 16.83 0.00 41.67 0.98
6950 13100 4.640201 ACACCTCGCAGTGCAAATTTATAT 59.360 37.500 16.83 0.00 41.67 0.86
6951 13101 5.207768 CACCTCGCAGTGCAAATTTATATC 58.792 41.667 16.83 0.00 0.00 1.63
6955 13105 6.293571 CCTCGCAGTGCAAATTTATATCATGA 60.294 38.462 16.83 0.00 0.00 3.07
6956 13106 6.661669 TCGCAGTGCAAATTTATATCATGAG 58.338 36.000 16.83 0.00 0.00 2.90
6958 13108 6.513884 CGCAGTGCAAATTTATATCATGAGGT 60.514 38.462 16.83 0.00 0.00 3.85
6959 13109 6.639686 GCAGTGCAAATTTATATCATGAGGTG 59.360 38.462 11.09 0.00 0.00 4.00
6960 13110 6.639686 CAGTGCAAATTTATATCATGAGGTGC 59.360 38.462 0.09 2.63 0.00 5.01
6962 13112 7.014905 AGTGCAAATTTATATCATGAGGTGCAT 59.985 33.333 0.09 0.00 40.08 3.96
6963 13113 7.327761 GTGCAAATTTATATCATGAGGTGCATC 59.672 37.037 0.09 0.00 40.08 3.91
6964 13114 7.231925 TGCAAATTTATATCATGAGGTGCATCT 59.768 33.333 0.00 0.00 34.15 2.90
6965 13115 7.541091 GCAAATTTATATCATGAGGTGCATCTG 59.459 37.037 2.86 0.00 34.15 2.90
6966 13116 7.698506 AATTTATATCATGAGGTGCATCTGG 57.301 36.000 2.86 0.00 34.15 3.86
6968 13118 2.634815 ATCATGAGGTGCATCTGGTC 57.365 50.000 2.86 0.00 34.15 4.02
6969 13119 0.543277 TCATGAGGTGCATCTGGTCC 59.457 55.000 2.86 0.00 34.15 4.46
6970 13120 0.253894 CATGAGGTGCATCTGGTCCA 59.746 55.000 2.86 0.00 34.15 4.02
6972 13122 0.770499 TGAGGTGCATCTGGTCCAAA 59.230 50.000 2.86 0.00 0.00 3.28
6973 13123 1.144708 TGAGGTGCATCTGGTCCAAAA 59.855 47.619 2.86 0.00 0.00 2.44
6974 13124 1.541588 GAGGTGCATCTGGTCCAAAAC 59.458 52.381 2.86 0.00 0.00 2.43
6984 13134 1.959848 GTCCAAAACCAGCTGCCTC 59.040 57.895 8.66 0.00 0.00 4.70
6985 13135 1.228552 TCCAAAACCAGCTGCCTCC 60.229 57.895 8.66 0.00 0.00 4.30
6986 13136 2.278330 CCAAAACCAGCTGCCTCCC 61.278 63.158 8.66 0.00 0.00 4.30
7005 13155 3.708734 CGAACGCCCAACCGTCAC 61.709 66.667 0.00 0.00 41.16 3.67
7006 13156 2.280592 GAACGCCCAACCGTCACT 60.281 61.111 0.00 0.00 41.16 3.41
7008 13158 1.838568 GAACGCCCAACCGTCACTTC 61.839 60.000 0.00 0.00 41.16 3.01
7009 13159 2.280524 CGCCCAACCGTCACTTCA 60.281 61.111 0.00 0.00 0.00 3.02
7010 13160 1.671054 CGCCCAACCGTCACTTCAT 60.671 57.895 0.00 0.00 0.00 2.57
7011 13161 1.234615 CGCCCAACCGTCACTTCATT 61.235 55.000 0.00 0.00 0.00 2.57
7013 13163 1.068541 GCCCAACCGTCACTTCATTTC 60.069 52.381 0.00 0.00 0.00 2.17
7014 13164 1.539827 CCCAACCGTCACTTCATTTCC 59.460 52.381 0.00 0.00 0.00 3.13
7017 13167 3.317993 CCAACCGTCACTTCATTTCCTTT 59.682 43.478 0.00 0.00 0.00 3.11
7019 13169 3.146847 ACCGTCACTTCATTTCCTTTCC 58.853 45.455 0.00 0.00 0.00 3.13
7020 13170 2.488153 CCGTCACTTCATTTCCTTTCCC 59.512 50.000 0.00 0.00 0.00 3.97
7021 13171 2.159627 CGTCACTTCATTTCCTTTCCCG 59.840 50.000 0.00 0.00 0.00 5.14
7022 13172 2.095212 GTCACTTCATTTCCTTTCCCGC 60.095 50.000 0.00 0.00 0.00 6.13
7023 13173 1.202348 CACTTCATTTCCTTTCCCGCC 59.798 52.381 0.00 0.00 0.00 6.13
7024 13174 0.817654 CTTCATTTCCTTTCCCGCCC 59.182 55.000 0.00 0.00 0.00 6.13
7025 13175 0.963355 TTCATTTCCTTTCCCGCCCG 60.963 55.000 0.00 0.00 0.00 6.13
7056 13206 4.699522 GCCCGAAGAACAGCCGGT 62.700 66.667 1.90 0.00 41.53 5.28
7057 13207 2.434359 CCCGAAGAACAGCCGGTC 60.434 66.667 1.90 0.00 41.53 4.79
7059 13209 2.809601 CGAAGAACAGCCGGTCGG 60.810 66.667 1.90 4.85 38.57 4.79
7060 13210 2.654877 GAAGAACAGCCGGTCGGA 59.345 61.111 14.15 0.00 37.50 4.55
7061 13211 1.005394 GAAGAACAGCCGGTCGGAA 60.005 57.895 14.15 0.00 37.50 4.30
7063 13213 0.391263 AAGAACAGCCGGTCGGAATC 60.391 55.000 14.15 5.04 37.50 2.52
7065 13215 1.079127 AACAGCCGGTCGGAATCTG 60.079 57.895 14.15 12.80 37.50 2.90
7066 13216 2.892425 CAGCCGGTCGGAATCTGC 60.892 66.667 14.15 0.00 37.50 4.26
7088 13238 3.733960 GCGACCGCCCAAAACCTC 61.734 66.667 2.55 0.00 34.56 3.85
7089 13239 3.419759 CGACCGCCCAAAACCTCG 61.420 66.667 0.00 0.00 0.00 4.63
7090 13240 3.733960 GACCGCCCAAAACCTCGC 61.734 66.667 0.00 0.00 0.00 5.03
7094 13244 3.733960 GCCCAAAACCTCGCCGTC 61.734 66.667 0.00 0.00 0.00 4.79
7096 13246 3.419759 CCAAAACCTCGCCGTCGG 61.420 66.667 6.99 6.99 36.13 4.79
7097 13247 4.084888 CAAAACCTCGCCGTCGGC 62.085 66.667 26.69 26.69 46.75 5.54
7115 13265 4.299796 GCCACCACCACCCCACAT 62.300 66.667 0.00 0.00 0.00 3.21
7116 13266 2.035626 CCACCACCACCCCACATC 59.964 66.667 0.00 0.00 0.00 3.06
7117 13267 2.035626 CACCACCACCCCACATCC 59.964 66.667 0.00 0.00 0.00 3.51
7118 13268 3.264845 ACCACCACCCCACATCCC 61.265 66.667 0.00 0.00 0.00 3.85
7120 13270 4.424711 CACCACCCCACATCCCCG 62.425 72.222 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.324943 ACACCTACCCATGTGAGCAC 59.675 55.000 0.00 0.00 36.35 4.40
1 2 2.772102 ACACCTACCCATGTGAGCA 58.228 52.632 0.00 0.00 36.35 4.26
7 8 1.003839 ACACGCACACCTACCCATG 60.004 57.895 0.00 0.00 0.00 3.66
8 9 1.003839 CACACGCACACCTACCCAT 60.004 57.895 0.00 0.00 0.00 4.00
10 11 3.047877 GCACACGCACACCTACCC 61.048 66.667 0.00 0.00 38.36 3.69
11 12 3.411351 CGCACACGCACACCTACC 61.411 66.667 0.00 0.00 38.40 3.18
21 22 0.043907 CTCATATGAACGCGCACACG 60.044 55.000 5.73 0.00 44.07 4.49
22 23 0.999406 ACTCATATGAACGCGCACAC 59.001 50.000 5.73 0.00 0.00 3.82
23 24 2.570442 TACTCATATGAACGCGCACA 57.430 45.000 5.73 7.23 0.00 4.57
24 25 2.858344 ACTTACTCATATGAACGCGCAC 59.142 45.455 5.73 0.00 0.00 5.34
25 26 2.857748 CACTTACTCATATGAACGCGCA 59.142 45.455 5.73 0.00 0.00 6.09
26 27 2.858344 ACACTTACTCATATGAACGCGC 59.142 45.455 5.73 0.00 0.00 6.86
27 28 5.387444 GCATACACTTACTCATATGAACGCG 60.387 44.000 3.53 3.53 0.00 6.01
28 29 5.387444 CGCATACACTTACTCATATGAACGC 60.387 44.000 6.90 0.00 0.00 4.84
29 30 5.387444 GCGCATACACTTACTCATATGAACG 60.387 44.000 6.90 0.00 0.00 3.95
30 31 5.462068 TGCGCATACACTTACTCATATGAAC 59.538 40.000 5.66 0.00 0.00 3.18
31 32 5.596845 TGCGCATACACTTACTCATATGAA 58.403 37.500 5.66 0.00 0.00 2.57
32 33 5.195001 TGCGCATACACTTACTCATATGA 57.805 39.130 5.66 5.07 0.00 2.15
33 34 7.276438 ACATATGCGCATACACTTACTCATATG 59.724 37.037 31.17 22.22 43.64 1.78
34 35 7.323420 ACATATGCGCATACACTTACTCATAT 58.677 34.615 31.17 9.84 0.00 1.78
35 36 6.687604 ACATATGCGCATACACTTACTCATA 58.312 36.000 31.17 7.71 0.00 2.15
36 37 5.541845 ACATATGCGCATACACTTACTCAT 58.458 37.500 31.17 10.59 0.00 2.90
37 38 4.944048 ACATATGCGCATACACTTACTCA 58.056 39.130 31.17 8.49 0.00 3.41
38 39 6.806739 TCATACATATGCGCATACACTTACTC 59.193 38.462 31.17 0.00 33.76 2.59
39 40 6.687604 TCATACATATGCGCATACACTTACT 58.312 36.000 31.17 11.81 33.76 2.24
40 41 6.586463 ACTCATACATATGCGCATACACTTAC 59.414 38.462 31.17 0.00 33.76 2.34
41 42 6.586082 CACTCATACATATGCGCATACACTTA 59.414 38.462 31.17 18.87 33.76 2.24
42 43 5.406477 CACTCATACATATGCGCATACACTT 59.594 40.000 31.17 17.44 33.76 3.16
43 44 4.925646 CACTCATACATATGCGCATACACT 59.074 41.667 31.17 18.17 33.76 3.55
44 45 4.923281 TCACTCATACATATGCGCATACAC 59.077 41.667 31.17 0.00 33.76 2.90
45 46 5.132897 TCACTCATACATATGCGCATACA 57.867 39.130 31.17 19.39 33.76 2.29
46 47 6.472680 CAATCACTCATACATATGCGCATAC 58.527 40.000 31.17 0.00 33.76 2.39
47 48 5.063817 GCAATCACTCATACATATGCGCATA 59.936 40.000 30.72 30.72 33.76 3.14
48 49 4.142752 GCAATCACTCATACATATGCGCAT 60.143 41.667 28.23 28.23 33.76 4.73
49 50 3.187022 GCAATCACTCATACATATGCGCA 59.813 43.478 14.96 14.96 33.76 6.09
50 51 3.722957 CGCAATCACTCATACATATGCGC 60.723 47.826 0.00 0.00 46.81 6.09
52 53 4.997905 ACGCAATCACTCATACATATGC 57.002 40.909 1.58 0.00 33.76 3.14
53 54 7.586714 ACATACGCAATCACTCATACATATG 57.413 36.000 0.00 0.00 35.04 1.78
54 55 8.523658 AGTACATACGCAATCACTCATACATAT 58.476 33.333 0.00 0.00 0.00 1.78
55 56 7.807907 CAGTACATACGCAATCACTCATACATA 59.192 37.037 0.00 0.00 0.00 2.29
56 57 6.642540 CAGTACATACGCAATCACTCATACAT 59.357 38.462 0.00 0.00 0.00 2.29
57 58 5.977129 CAGTACATACGCAATCACTCATACA 59.023 40.000 0.00 0.00 0.00 2.29
58 59 5.977725 ACAGTACATACGCAATCACTCATAC 59.022 40.000 0.00 0.00 0.00 2.39
59 60 6.144078 ACAGTACATACGCAATCACTCATA 57.856 37.500 0.00 0.00 0.00 2.15
60 61 5.011090 ACAGTACATACGCAATCACTCAT 57.989 39.130 0.00 0.00 0.00 2.90
61 62 4.450082 ACAGTACATACGCAATCACTCA 57.550 40.909 0.00 0.00 0.00 3.41
62 63 7.464830 AAATACAGTACATACGCAATCACTC 57.535 36.000 0.00 0.00 0.00 3.51
63 64 8.936070 TTAAATACAGTACATACGCAATCACT 57.064 30.769 0.00 0.00 0.00 3.41
64 65 9.976255 TTTTAAATACAGTACATACGCAATCAC 57.024 29.630 0.00 0.00 0.00 3.06
142 144 6.963796 AGAAATGTTCAGAACACATGAGAAC 58.036 36.000 18.49 4.60 45.50 3.01
164 166 1.631388 TGAAAACTTGCCCCGGATAGA 59.369 47.619 0.73 0.00 0.00 1.98
177 179 3.496884 TGAATTAACTCGCGCTGAAAACT 59.503 39.130 5.56 0.00 0.00 2.66
186 188 5.114572 GCATTGATGAATGAATTAACTCGCG 59.885 40.000 9.25 0.00 41.49 5.87
223 225 1.728490 GCGCCATCAATCCTGGTTCC 61.728 60.000 0.00 0.00 36.10 3.62
224 226 1.729881 GCGCCATCAATCCTGGTTC 59.270 57.895 0.00 0.00 36.10 3.62
225 227 2.114670 CGCGCCATCAATCCTGGTT 61.115 57.895 0.00 0.00 36.10 3.67
226 228 2.514592 CGCGCCATCAATCCTGGT 60.515 61.111 0.00 0.00 36.10 4.00
235 237 4.505217 CGTGTTCTGCGCGCCATC 62.505 66.667 30.77 16.45 44.35 3.51
331 333 2.888863 CTCACGGCTCTCCACTCC 59.111 66.667 0.00 0.00 0.00 3.85
332 334 2.183046 GCTCACGGCTCTCCACTC 59.817 66.667 0.00 0.00 38.06 3.51
333 335 3.753434 CGCTCACGGCTCTCCACT 61.753 66.667 0.00 0.00 39.13 4.00
334 336 2.945398 GATCGCTCACGGCTCTCCAC 62.945 65.000 0.00 0.00 40.63 4.02
335 337 2.755876 ATCGCTCACGGCTCTCCA 60.756 61.111 0.00 0.00 40.63 3.86
623 630 1.826921 CGCGCTCTTCCCCCTACTA 60.827 63.158 5.56 0.00 0.00 1.82
632 639 2.679132 TATTCCCTCGCGCGCTCTTC 62.679 60.000 30.48 0.00 0.00 2.87
633 640 2.292794 TTATTCCCTCGCGCGCTCTT 62.293 55.000 30.48 9.92 0.00 2.85
634 641 2.292794 TTTATTCCCTCGCGCGCTCT 62.293 55.000 30.48 8.60 0.00 4.09
635 642 1.881252 TTTATTCCCTCGCGCGCTC 60.881 57.895 30.48 0.59 0.00 5.03
636 643 2.171725 GTTTATTCCCTCGCGCGCT 61.172 57.895 30.48 11.09 0.00 5.92
642 649 1.389555 GCCCCTTGTTTATTCCCTCG 58.610 55.000 0.00 0.00 0.00 4.63
824 1013 0.309612 GAGACGGAAGGATCGAGAGC 59.690 60.000 0.00 0.00 0.00 4.09
852 1041 3.658422 GGGAAGGTGGGTGGGGAC 61.658 72.222 0.00 0.00 0.00 4.46
893 1094 3.986116 GAAGGAGGCGGAGGGGAGT 62.986 68.421 0.00 0.00 0.00 3.85
918 1122 1.522580 GATGGGGACTTGAGAGCGC 60.523 63.158 0.00 0.00 0.00 5.92
926 1130 2.649742 TGAGAAGAGGATGGGGACTT 57.350 50.000 0.00 0.00 0.00 3.01
1060 1276 3.465403 CACGAGGGAGGCAGGGAG 61.465 72.222 0.00 0.00 0.00 4.30
1093 1309 1.006832 CGCCAGAGTAATTGAACGGG 58.993 55.000 0.00 0.00 0.00 5.28
1099 1315 3.616821 TCGTGATTTCGCCAGAGTAATTG 59.383 43.478 0.00 0.00 0.00 2.32
1121 1337 0.326264 AAAATCAGAGAGCAGGGCGT 59.674 50.000 0.00 0.00 0.00 5.68
1133 1349 1.466167 CACCACCAGCGAGAAAATCAG 59.534 52.381 0.00 0.00 0.00 2.90
1134 1350 1.071542 TCACCACCAGCGAGAAAATCA 59.928 47.619 0.00 0.00 0.00 2.57
1142 1358 2.347114 CACCATCACCACCAGCGA 59.653 61.111 0.00 0.00 0.00 4.93
1145 1361 1.002134 GGACCACCATCACCACCAG 60.002 63.158 0.00 0.00 35.97 4.00
1151 1367 1.201429 ACCAGGAGGACCACCATCAC 61.201 60.000 10.90 0.00 38.69 3.06
1361 1577 2.358247 GTTCGAAGGCCCAGCGAA 60.358 61.111 17.63 17.63 41.15 4.70
1362 1578 3.311110 AGTTCGAAGGCCCAGCGA 61.311 61.111 0.00 3.09 0.00 4.93
1363 1579 3.121030 CAGTTCGAAGGCCCAGCG 61.121 66.667 0.00 0.02 0.00 5.18
1365 1581 2.544726 GAACAGTTCGAAGGCCCAG 58.455 57.895 0.00 0.00 0.00 4.45
1366 1582 4.792087 GAACAGTTCGAAGGCCCA 57.208 55.556 0.00 0.00 0.00 5.36
1423 1642 2.939103 CTGGCAGGCAACAGTTAGTATC 59.061 50.000 6.61 0.00 41.41 2.24
1426 1645 0.474184 ACTGGCAGGCAACAGTTAGT 59.526 50.000 20.34 0.00 45.03 2.24
1441 1660 6.092807 GGTATACAGCTTCTTCAAGAAACTGG 59.907 42.308 26.87 13.84 46.98 4.00
1466 1685 1.397390 GGGGGCATTCCTGAGCATTG 61.397 60.000 0.00 0.00 35.33 2.82
1541 1760 0.667487 ATGACAGACACAACTCGGCG 60.667 55.000 0.00 0.00 0.00 6.46
1575 1794 5.437289 TTGGCTAGTCAACATGAAGTTTG 57.563 39.130 5.45 0.00 38.74 2.93
1750 1969 3.620488 ACATGCCGGAATGAAGTAACAT 58.380 40.909 29.99 3.56 0.00 2.71
1787 2006 6.638468 GCAACTTCTCAATTACCAACTTCAAG 59.362 38.462 0.00 0.00 0.00 3.02
1912 2131 8.687824 AAATATTGCAACTATACTTGTGCAAC 57.312 30.769 11.69 0.00 43.53 4.17
1913 2132 9.703892 AAAAATATTGCAACTATACTTGTGCAA 57.296 25.926 11.83 11.83 44.57 4.08
2109 2341 0.403271 ATCTGGCTGCAACTTCCACT 59.597 50.000 0.50 0.00 0.00 4.00
2208 2440 5.387113 AGTATTTCCAAGGCCATATGTCA 57.613 39.130 5.01 0.00 0.00 3.58
2260 2492 2.840511 TGGAAGTAAGCATACCCTGGA 58.159 47.619 0.00 0.00 32.08 3.86
2367 2599 4.932200 AGAGCTGATCCTAACAAAGTTTCG 59.068 41.667 0.00 0.00 0.00 3.46
2402 2635 1.133792 CACACTTGAAACCCTCCCTGT 60.134 52.381 0.00 0.00 0.00 4.00
2475 2708 6.986904 AACTAATAGTTAAGCTCAAGCCAC 57.013 37.500 3.48 0.00 38.08 5.01
2503 3553 6.065976 TCCTAACCATTCACATCAACTGAT 57.934 37.500 0.00 0.00 34.56 2.90
2565 3615 7.535258 GCAATTGATAAACCATACATTAGCTCG 59.465 37.037 10.34 0.00 0.00 5.03
2648 3698 2.616960 CTACTTGGCACGCTGTCATTA 58.383 47.619 0.00 0.00 29.04 1.90
2795 3845 5.102953 AGTAAAGGCATAGACAGCAATGA 57.897 39.130 0.00 0.00 0.00 2.57
2820 3870 8.031864 ACACAATGAGATACAACAGAGAGTAAG 58.968 37.037 0.00 0.00 0.00 2.34
2837 3887 7.490962 TTTACAGTTTCCAGTACACAATGAG 57.509 36.000 0.00 0.00 0.00 2.90
2840 3890 6.264292 TGCATTTACAGTTTCCAGTACACAAT 59.736 34.615 0.00 0.00 0.00 2.71
2877 3928 9.520515 ACAAAGCATAAGGACTATTATATTGGG 57.479 33.333 0.00 0.00 0.00 4.12
2925 3978 1.225855 CTGCCAACTTACGAGCACAA 58.774 50.000 0.00 0.00 0.00 3.33
2930 3983 3.125316 GGATCAAACTGCCAACTTACGAG 59.875 47.826 0.00 0.00 0.00 4.18
2937 3990 3.763897 ACCTAATGGATCAAACTGCCAAC 59.236 43.478 0.00 0.00 34.95 3.77
2940 3993 3.620488 TGACCTAATGGATCAAACTGCC 58.380 45.455 0.00 0.00 37.04 4.85
2957 4010 6.923508 CCTTCCAAAAATGTAGAAACTTGACC 59.076 38.462 0.00 0.00 0.00 4.02
3040 4093 5.547465 ACACCTTAATCAACAACTCGATGA 58.453 37.500 0.00 0.00 0.00 2.92
3169 4222 7.004086 TCCATCATGGTTCTCTGTTTTACTTT 58.996 34.615 2.79 0.00 39.03 2.66
3199 4252 7.740519 CTGCAAGTACATAAGTTTAATTGGC 57.259 36.000 0.00 0.00 0.00 4.52
3234 4291 7.164230 AGTGGATTAAATAATGTTTTGCGGA 57.836 32.000 0.00 0.00 0.00 5.54
3283 4340 8.579863 GCCTTATCAAATGCTTATTTGGTCTAT 58.420 33.333 11.51 2.76 40.79 1.98
3366 4424 5.581874 ACTTCATTTTGAAAAAGCACAGGTG 59.418 36.000 0.00 0.00 35.73 4.00
3478 4538 2.283298 CGCATATGGCACTGGGATATC 58.717 52.381 4.56 0.00 45.17 1.63
3514 4574 2.567169 TGACTGTGATACAAGGACCCAG 59.433 50.000 0.00 0.00 0.00 4.45
3515 4575 2.567169 CTGACTGTGATACAAGGACCCA 59.433 50.000 0.00 0.00 0.00 4.51
3562 4625 4.220602 CCGAGGAAACATGGGAAAGAAAAT 59.779 41.667 0.00 0.00 0.00 1.82
3566 4629 1.613255 GCCGAGGAAACATGGGAAAGA 60.613 52.381 0.00 0.00 0.00 2.52
3579 4642 2.060383 CCCAGTGATCTGCCGAGGA 61.060 63.158 0.00 0.00 40.09 3.71
3741 5063 1.851021 CGTTCGCCAATGGAGTGCAA 61.851 55.000 2.05 0.00 0.00 4.08
3756 5078 3.492313 GAATTGTGGATCTTGCACGTTC 58.508 45.455 0.00 0.00 41.94 3.95
3791 5113 3.742385 TGCACAGATCACTGATGTTTGA 58.258 40.909 6.52 0.00 46.03 2.69
3923 5245 4.504097 GCCTGTTCTGTGATTGAAAACAAC 59.496 41.667 0.00 0.00 30.16 3.32
3926 5248 4.293415 CAGCCTGTTCTGTGATTGAAAAC 58.707 43.478 0.00 0.00 0.00 2.43
4109 5431 5.070685 GGTGTGTGATAAAGGAGAAAGGTT 58.929 41.667 0.00 0.00 0.00 3.50
4131 5454 0.390866 ATGAGCACGACTTCTGCAGG 60.391 55.000 15.13 0.36 37.08 4.85
4391 5717 0.539051 CACGAGAGCCTTCTTCCCAT 59.461 55.000 0.00 0.00 32.53 4.00
4473 5800 4.460948 AATATGCAACAAAGCTTCCTGG 57.539 40.909 0.00 0.00 34.99 4.45
4486 5813 8.370940 TCCTGTCCAAATTGTTTAAATATGCAA 58.629 29.630 0.00 0.00 0.00 4.08
4602 5945 3.976169 GCTTTTGCACAAGTACATCCAA 58.024 40.909 13.84 0.00 46.58 3.53
4603 5946 3.641437 GCTTTTGCACAAGTACATCCA 57.359 42.857 13.84 0.00 46.58 3.41
4753 6096 8.747538 ACTGTAAATATCCAAACCATCTTACC 57.252 34.615 0.00 0.00 0.00 2.85
4849 6192 5.044624 TCCTTTTCCATGATCATCCTCAGTT 60.045 40.000 4.86 0.00 0.00 3.16
4885 6228 2.561478 AAATGCACAGTTCGGGTAGT 57.439 45.000 0.00 0.00 0.00 2.73
4942 6285 2.096614 CCGTCAACAATAACACCACGTC 60.097 50.000 0.00 0.00 0.00 4.34
4948 6291 3.435327 TCATCTGCCGTCAACAATAACAC 59.565 43.478 0.00 0.00 0.00 3.32
5020 6363 0.533085 GGCGGCTAGATTGGGACTTC 60.533 60.000 0.00 0.00 0.00 3.01
5038 6381 4.319177 CCTTCTTTAGGGATATTCTGCGG 58.681 47.826 0.00 0.00 40.67 5.69
5065 6408 4.278419 ACAGCTTTCGTAAAATTTGCCTCT 59.722 37.500 0.00 0.00 0.00 3.69
5067 6410 4.037446 TCACAGCTTTCGTAAAATTTGCCT 59.963 37.500 0.00 0.00 0.00 4.75
5083 6426 1.207791 CCCCTTCCATACTCACAGCT 58.792 55.000 0.00 0.00 0.00 4.24
5086 6429 3.129262 TCATCCCCTTCCATACTCACA 57.871 47.619 0.00 0.00 0.00 3.58
5095 6438 3.019564 CACAGACATTTCATCCCCTTCC 58.980 50.000 0.00 0.00 0.00 3.46
5100 6443 5.902613 TCAAATCACAGACATTTCATCCC 57.097 39.130 0.00 0.00 0.00 3.85
5148 6491 8.407832 TGTCATGATAATTTTCAGTGCCAATAG 58.592 33.333 0.00 0.00 0.00 1.73
5258 6603 5.448654 AGAGGGCATCATTTAATAAGCACA 58.551 37.500 0.58 0.00 0.00 4.57
5276 6621 7.178451 ACAACTTAATTTGGAAACCATAGAGGG 59.822 37.037 9.99 0.00 43.89 4.30
5305 6650 9.031360 GTTCGCTGACATAGAATTAAACTGATA 57.969 33.333 0.00 0.00 0.00 2.15
5411 6757 0.973632 TCAGGTACATGACGCCTTGT 59.026 50.000 6.03 0.00 35.27 3.16
5504 6850 7.814587 GCCTTTAAGCATAAGATGTTCTTGTTT 59.185 33.333 0.07 0.00 37.29 2.83
5562 6908 4.183865 TGACCGAACTATTTGATCTGCTG 58.816 43.478 0.00 0.00 0.00 4.41
5563 6909 4.471904 TGACCGAACTATTTGATCTGCT 57.528 40.909 0.00 0.00 0.00 4.24
5575 6921 4.437239 CTTCATATGAGCTTGACCGAACT 58.563 43.478 5.39 0.00 0.00 3.01
5671 7017 4.472108 AGGGACAACATATCGTTTAGGGAA 59.528 41.667 0.00 0.00 34.86 3.97
5705 7051 2.172717 CCGAGTCCCTGAATTTGGGTAT 59.827 50.000 14.64 6.98 44.84 2.73
5805 7341 3.959943 TGTATACACGTCGATGATGGTG 58.040 45.455 12.58 6.79 0.00 4.17
5806 7342 4.848562 ATGTATACACGTCGATGATGGT 57.151 40.909 12.58 8.88 0.00 3.55
5863 7399 5.829924 ACCGGCAAGATTAAGATTTGATGAT 59.170 36.000 0.00 0.00 0.00 2.45
5864 7400 5.066375 CACCGGCAAGATTAAGATTTGATGA 59.934 40.000 0.00 0.00 0.00 2.92
5865 7401 5.066375 TCACCGGCAAGATTAAGATTTGATG 59.934 40.000 0.00 0.00 0.00 3.07
5905 7457 7.492669 GGCTCTAAAATCAAATAAGAAAAGGCC 59.507 37.037 0.00 0.00 0.00 5.19
5912 7464 8.321353 TGAGACAGGCTCTAAAATCAAATAAGA 58.679 33.333 4.45 0.00 44.27 2.10
5915 7467 8.049117 ACATGAGACAGGCTCTAAAATCAAATA 58.951 33.333 4.45 0.00 44.27 1.40
5945 7497 8.929746 ACCTAATAGCGTTACAAAACTAGAAAC 58.070 33.333 0.00 0.00 33.15 2.78
5962 7514 7.934120 ACATAAGAAATGAGACCACCTAATAGC 59.066 37.037 0.00 0.00 0.00 2.97
6007 7559 2.103094 CCGCATCTATCCAGTCCTGAAA 59.897 50.000 0.00 0.00 0.00 2.69
6063 7615 1.548582 CCAAGACCAAATGAGGCCACT 60.549 52.381 5.01 0.00 0.00 4.00
6084 7636 1.398692 AAACAGTGGTGACGGCAATT 58.601 45.000 0.00 0.00 0.00 2.32
6090 7642 2.914214 CACAACAAAAACAGTGGTGACG 59.086 45.455 0.00 0.00 42.29 4.35
6183 7735 2.749076 GGCAACATCAGCTGTACATGAA 59.251 45.455 18.02 0.00 36.98 2.57
6184 7736 2.358957 GGCAACATCAGCTGTACATGA 58.641 47.619 18.02 0.00 36.98 3.07
6195 7747 1.559368 CAAATCCCTGGGCAACATCA 58.441 50.000 8.22 0.00 39.74 3.07
6216 7768 2.603075 TTGCCCCAAAGAGTAGCAAT 57.397 45.000 0.00 0.00 38.45 3.56
6362 7921 2.665603 GAAGGACCGGCTTCTGCT 59.334 61.111 12.97 0.00 39.59 4.24
6421 7980 4.899502 ACTGTTCGATCCATCTTCACTTT 58.100 39.130 0.00 0.00 0.00 2.66
6491 8050 3.310193 TCCGACAATATGTATCCACCCA 58.690 45.455 0.00 0.00 0.00 4.51
6500 8059 0.459899 TCTGCGCTCCGACAATATGT 59.540 50.000 9.73 0.00 0.00 2.29
6532 8091 2.369394 GCTGGGGTAGAAATGAAGTGG 58.631 52.381 0.00 0.00 0.00 4.00
6558 8117 0.970640 TGTGGACGGTTAAGCTGCTA 59.029 50.000 0.90 0.00 0.00 3.49
6614 8568 1.213013 GATCAGACCGCAGTGACGT 59.787 57.895 0.00 0.00 0.00 4.34
6615 8569 1.517257 GGATCAGACCGCAGTGACG 60.517 63.158 0.00 0.00 0.00 4.35
6617 8571 0.532573 GAAGGATCAGACCGCAGTGA 59.467 55.000 0.00 0.00 34.73 3.41
6618 8572 0.534412 AGAAGGATCAGACCGCAGTG 59.466 55.000 0.00 0.00 34.73 3.66
6619 8573 1.205893 GAAGAAGGATCAGACCGCAGT 59.794 52.381 0.00 0.00 34.73 4.40
6620 8574 1.472376 GGAAGAAGGATCAGACCGCAG 60.472 57.143 0.00 0.00 34.73 5.18
6623 8577 2.697751 AGATGGAAGAAGGATCAGACCG 59.302 50.000 0.00 0.00 34.73 4.79
6641 8649 0.991920 ACCAACCATCCCGTCAAGAT 59.008 50.000 0.00 0.00 0.00 2.40
6642 8650 0.036164 CACCAACCATCCCGTCAAGA 59.964 55.000 0.00 0.00 0.00 3.02
6645 8653 1.373435 GACACCAACCATCCCGTCA 59.627 57.895 0.00 0.00 0.00 4.35
6649 8662 0.958876 GAACCGACACCAACCATCCC 60.959 60.000 0.00 0.00 0.00 3.85
6657 8670 2.741092 GAGCAGGAACCGACACCA 59.259 61.111 0.00 0.00 0.00 4.17
6662 8675 2.879233 AAAGCCGAGCAGGAACCGA 61.879 57.895 2.12 0.00 45.00 4.69
6663 8676 2.358737 AAAGCCGAGCAGGAACCG 60.359 61.111 2.12 0.00 45.00 4.44
6665 8678 0.603975 AGTCAAAGCCGAGCAGGAAC 60.604 55.000 2.12 0.00 45.00 3.62
6667 8680 1.004560 CAGTCAAAGCCGAGCAGGA 60.005 57.895 2.12 0.00 45.00 3.86
6668 8681 1.302033 ACAGTCAAAGCCGAGCAGG 60.302 57.895 0.00 0.00 44.97 4.85
6669 8682 1.864862 CACAGTCAAAGCCGAGCAG 59.135 57.895 0.00 0.00 0.00 4.24
6697 8720 4.232878 CAGGCCCAGGCGAGCTAG 62.233 72.222 0.00 0.00 43.06 3.42
6709 8732 2.378634 ATACACCCTCAGCCAGGCC 61.379 63.158 8.22 0.00 41.80 5.19
6710 8733 1.153086 CATACACCCTCAGCCAGGC 60.153 63.158 1.84 1.84 41.80 4.85
6711 8734 1.274703 ACCATACACCCTCAGCCAGG 61.275 60.000 0.00 0.00 43.01 4.45
6712 8735 0.179000 GACCATACACCCTCAGCCAG 59.821 60.000 0.00 0.00 0.00 4.85
6713 8736 0.546507 TGACCATACACCCTCAGCCA 60.547 55.000 0.00 0.00 0.00 4.75
6756 8779 9.849166 CTAAACAAGTGTTGAACTCCTTTAAAA 57.151 29.630 0.00 0.00 38.56 1.52
6757 8780 7.971722 GCTAAACAAGTGTTGAACTCCTTTAAA 59.028 33.333 0.00 0.00 38.56 1.52
6759 8782 6.238266 CGCTAAACAAGTGTTGAACTCCTTTA 60.238 38.462 0.00 0.00 38.56 1.85
6761 8784 4.035208 CGCTAAACAAGTGTTGAACTCCTT 59.965 41.667 0.00 0.00 38.56 3.36
6763 8786 3.558418 TCGCTAAACAAGTGTTGAACTCC 59.442 43.478 0.00 0.00 38.56 3.85
6765 8788 3.936453 TGTCGCTAAACAAGTGTTGAACT 59.064 39.130 0.00 0.00 42.60 3.01
6783 11351 1.269517 GGAGATGCTCTTAGCCTGTCG 60.270 57.143 0.00 0.00 41.51 4.35
6820 11388 9.764870 GACGATCCAAAAGTTAGGTATTTTTAC 57.235 33.333 0.00 0.00 0.00 2.01
6821 11389 9.729281 AGACGATCCAAAAGTTAGGTATTTTTA 57.271 29.630 0.00 0.00 0.00 1.52
6823 11391 7.120726 CCAGACGATCCAAAAGTTAGGTATTTT 59.879 37.037 0.00 0.00 0.00 1.82
6826 11394 5.396436 CCCAGACGATCCAAAAGTTAGGTAT 60.396 44.000 0.00 0.00 0.00 2.73
6828 11396 3.307480 CCCAGACGATCCAAAAGTTAGGT 60.307 47.826 0.00 0.00 0.00 3.08
6829 11397 3.270877 CCCAGACGATCCAAAAGTTAGG 58.729 50.000 0.00 0.00 0.00 2.69
6830 11398 3.270877 CCCCAGACGATCCAAAAGTTAG 58.729 50.000 0.00 0.00 0.00 2.34
6831 11399 2.617021 GCCCCAGACGATCCAAAAGTTA 60.617 50.000 0.00 0.00 0.00 2.24
6832 11400 1.886655 GCCCCAGACGATCCAAAAGTT 60.887 52.381 0.00 0.00 0.00 2.66
6833 11401 0.322546 GCCCCAGACGATCCAAAAGT 60.323 55.000 0.00 0.00 0.00 2.66
6834 11402 0.322456 TGCCCCAGACGATCCAAAAG 60.322 55.000 0.00 0.00 0.00 2.27
6835 11403 0.111446 TTGCCCCAGACGATCCAAAA 59.889 50.000 0.00 0.00 0.00 2.44
6836 11404 0.111446 TTTGCCCCAGACGATCCAAA 59.889 50.000 0.00 0.00 0.00 3.28
6837 11405 0.111446 TTTTGCCCCAGACGATCCAA 59.889 50.000 0.00 0.00 0.00 3.53
6838 11406 0.111446 TTTTTGCCCCAGACGATCCA 59.889 50.000 0.00 0.00 0.00 3.41
6839 11407 2.955609 TTTTTGCCCCAGACGATCC 58.044 52.632 0.00 0.00 0.00 3.36
6854 11422 1.065551 GTCTGTTGGAGCAGCGTTTTT 59.934 47.619 0.00 0.00 36.49 1.94
6856 11424 1.498865 CGTCTGTTGGAGCAGCGTTT 61.499 55.000 0.00 0.00 36.49 3.60
6857 11425 1.956170 CGTCTGTTGGAGCAGCGTT 60.956 57.895 0.00 0.00 36.49 4.84
6858 11426 2.356313 CGTCTGTTGGAGCAGCGT 60.356 61.111 0.00 0.00 36.49 5.07
6859 11427 3.114616 CCGTCTGTTGGAGCAGCG 61.115 66.667 0.00 0.00 36.49 5.18
6860 11428 2.029844 GACCGTCTGTTGGAGCAGC 61.030 63.158 0.00 0.00 36.49 5.25
6861 11429 1.374758 GGACCGTCTGTTGGAGCAG 60.375 63.158 0.00 0.00 37.81 4.24
6862 11430 1.480212 ATGGACCGTCTGTTGGAGCA 61.480 55.000 0.00 0.00 0.00 4.26
6865 11433 1.134521 GCATATGGACCGTCTGTTGGA 60.135 52.381 4.56 0.00 0.00 3.53
6866 11434 1.299541 GCATATGGACCGTCTGTTGG 58.700 55.000 4.56 0.00 0.00 3.77
6867 11435 2.022764 TGCATATGGACCGTCTGTTG 57.977 50.000 4.56 0.00 0.00 3.33
6869 11437 2.779755 TTTGCATATGGACCGTCTGT 57.220 45.000 4.56 0.00 0.00 3.41
6888 11456 1.005512 GGCCGCGGTCCAAATTTTT 60.006 52.632 28.70 0.00 0.00 1.94
6889 11457 1.873270 GAGGCCGCGGTCCAAATTTT 61.873 55.000 31.19 12.83 0.00 1.82
6901 11469 2.292794 TTACATCACGAGGAGGCCGC 62.293 60.000 0.00 0.00 0.00 6.53
6902 11470 0.174845 TTTACATCACGAGGAGGCCG 59.825 55.000 0.00 0.00 0.00 6.13
6903 11471 2.396590 TTTTACATCACGAGGAGGCC 57.603 50.000 0.00 0.00 0.00 5.19
6906 11474 6.762108 GTGTTGTATTTTACATCACGAGGAG 58.238 40.000 11.14 0.00 44.51 3.69
6907 11475 6.715344 GTGTTGTATTTTACATCACGAGGA 57.285 37.500 11.14 0.00 44.51 3.71
6913 11481 4.998033 TGCGAGGTGTTGTATTTTACATCA 59.002 37.500 0.00 0.00 38.68 3.07
6914 11482 5.121768 ACTGCGAGGTGTTGTATTTTACATC 59.878 40.000 0.00 0.00 38.68 3.06
6915 11483 5.001232 ACTGCGAGGTGTTGTATTTTACAT 58.999 37.500 0.00 0.00 38.68 2.29
6916 11484 4.212425 CACTGCGAGGTGTTGTATTTTACA 59.788 41.667 0.00 0.00 36.79 2.41
6919 11487 2.031157 GCACTGCGAGGTGTTGTATTTT 60.031 45.455 9.32 0.00 39.21 1.82
6920 11488 1.535462 GCACTGCGAGGTGTTGTATTT 59.465 47.619 9.32 0.00 39.21 1.40
6921 11489 1.156736 GCACTGCGAGGTGTTGTATT 58.843 50.000 9.32 0.00 39.21 1.89
6933 13083 5.854866 CCTCATGATATAAATTTGCACTGCG 59.145 40.000 0.00 0.00 0.00 5.18
6935 13085 6.639686 GCACCTCATGATATAAATTTGCACTG 59.360 38.462 0.00 0.00 0.00 3.66
6936 13086 6.321945 TGCACCTCATGATATAAATTTGCACT 59.678 34.615 0.00 0.00 31.59 4.40
6937 13087 6.506147 TGCACCTCATGATATAAATTTGCAC 58.494 36.000 0.00 0.00 31.59 4.57
6939 13089 7.541091 CAGATGCACCTCATGATATAAATTTGC 59.459 37.037 0.00 0.00 35.05 3.68
6942 13092 7.236529 ACCAGATGCACCTCATGATATAAATT 58.763 34.615 0.00 0.00 35.05 1.82
6943 13093 6.787170 ACCAGATGCACCTCATGATATAAAT 58.213 36.000 0.00 0.00 35.05 1.40
6945 13095 5.280164 GGACCAGATGCACCTCATGATATAA 60.280 44.000 0.00 0.00 35.05 0.98
6946 13096 4.223700 GGACCAGATGCACCTCATGATATA 59.776 45.833 0.00 0.00 35.05 0.86
6948 13098 2.369860 GGACCAGATGCACCTCATGATA 59.630 50.000 0.00 0.00 35.05 2.15
6949 13099 1.142465 GGACCAGATGCACCTCATGAT 59.858 52.381 0.00 0.00 35.05 2.45
6950 13100 0.543277 GGACCAGATGCACCTCATGA 59.457 55.000 0.00 0.00 35.05 3.07
6951 13101 0.253894 TGGACCAGATGCACCTCATG 59.746 55.000 0.00 0.00 35.05 3.07
6955 13105 1.620822 GTTTTGGACCAGATGCACCT 58.379 50.000 0.00 0.00 0.00 4.00
6966 13116 1.527433 GGAGGCAGCTGGTTTTGGAC 61.527 60.000 17.12 0.00 0.00 4.02
6968 13118 2.278330 GGGAGGCAGCTGGTTTTGG 61.278 63.158 17.12 0.00 0.00 3.28
6969 13119 2.629656 CGGGAGGCAGCTGGTTTTG 61.630 63.158 17.12 0.00 0.00 2.44
6970 13120 2.282462 CGGGAGGCAGCTGGTTTT 60.282 61.111 17.12 0.00 0.00 2.43
6988 13138 3.708734 GTGACGGTTGGGCGTTCG 61.709 66.667 0.00 0.00 0.00 3.95
6989 13139 1.838568 GAAGTGACGGTTGGGCGTTC 61.839 60.000 0.00 0.00 0.00 3.95
6992 13142 1.234615 AATGAAGTGACGGTTGGGCG 61.235 55.000 0.00 0.00 0.00 6.13
6993 13143 0.958822 AAATGAAGTGACGGTTGGGC 59.041 50.000 0.00 0.00 0.00 5.36
6994 13144 1.539827 GGAAATGAAGTGACGGTTGGG 59.460 52.381 0.00 0.00 0.00 4.12
6995 13145 2.504367 AGGAAATGAAGTGACGGTTGG 58.496 47.619 0.00 0.00 0.00 3.77
6996 13146 4.537015 GAAAGGAAATGAAGTGACGGTTG 58.463 43.478 0.00 0.00 0.00 3.77
6997 13147 3.568430 GGAAAGGAAATGAAGTGACGGTT 59.432 43.478 0.00 0.00 0.00 4.44
6999 13149 2.488153 GGGAAAGGAAATGAAGTGACGG 59.512 50.000 0.00 0.00 0.00 4.79
7001 13151 2.095212 GCGGGAAAGGAAATGAAGTGAC 60.095 50.000 0.00 0.00 0.00 3.67
7003 13153 1.202348 GGCGGGAAAGGAAATGAAGTG 59.798 52.381 0.00 0.00 0.00 3.16
7004 13154 1.545841 GGCGGGAAAGGAAATGAAGT 58.454 50.000 0.00 0.00 0.00 3.01
7005 13155 0.817654 GGGCGGGAAAGGAAATGAAG 59.182 55.000 0.00 0.00 0.00 3.02
7006 13156 0.963355 CGGGCGGGAAAGGAAATGAA 60.963 55.000 0.00 0.00 0.00 2.57
7008 13158 3.063743 GCGGGCGGGAAAGGAAATG 62.064 63.158 0.00 0.00 0.00 2.32
7009 13159 2.754254 GCGGGCGGGAAAGGAAAT 60.754 61.111 0.00 0.00 0.00 2.17
7043 13193 0.391263 ATTCCGACCGGCTGTTCTTC 60.391 55.000 0.00 0.00 34.68 2.87
7045 13195 1.218316 GATTCCGACCGGCTGTTCT 59.782 57.895 0.00 0.00 34.68 3.01
7046 13196 1.084370 CAGATTCCGACCGGCTGTTC 61.084 60.000 0.00 0.00 34.68 3.18
7047 13197 1.079127 CAGATTCCGACCGGCTGTT 60.079 57.895 0.00 0.00 34.68 3.16
7048 13198 2.579201 CAGATTCCGACCGGCTGT 59.421 61.111 0.00 0.00 34.68 4.40
7049 13199 2.892425 GCAGATTCCGACCGGCTG 60.892 66.667 0.00 6.86 34.68 4.85
7071 13221 3.733960 GAGGTTTTGGGCGGTCGC 61.734 66.667 6.83 6.83 41.06 5.19
7073 13223 3.733960 GCGAGGTTTTGGGCGGTC 61.734 66.667 0.00 0.00 0.00 4.79
7077 13227 3.733960 GACGGCGAGGTTTTGGGC 61.734 66.667 16.62 0.00 0.00 5.36
7078 13228 3.419759 CGACGGCGAGGTTTTGGG 61.420 66.667 16.62 0.00 40.82 4.12
7079 13229 3.419759 CCGACGGCGAGGTTTTGG 61.420 66.667 15.16 0.00 40.82 3.28
7080 13230 4.084888 GCCGACGGCGAGGTTTTG 62.085 66.667 25.24 0.00 39.62 2.44
7099 13249 2.035626 GATGTGGGGTGGTGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
7100 13250 2.035626 GGATGTGGGGTGGTGGTG 59.964 66.667 0.00 0.00 0.00 4.17
7103 13253 4.424711 CGGGGATGTGGGGTGGTG 62.425 72.222 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.