Multiple sequence alignment - TraesCS7D01G110100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G110100 chr7D 100.000 2315 0 0 1 2315 66512516 66514830 0.000000e+00 4276.0
1 TraesCS7D01G110100 chr7D 92.584 445 22 5 1871 2315 68804538 68804105 1.510000e-176 628.0
2 TraesCS7D01G110100 chr7D 84.307 599 56 12 1666 2259 68923016 68922451 3.360000e-153 551.0
3 TraesCS7D01G110100 chr7D 80.168 832 70 39 971 1746 66484759 66485551 3.390000e-148 534.0
4 TraesCS7D01G110100 chr7D 85.316 538 41 12 971 1487 68935168 68934648 2.640000e-144 521.0
5 TraesCS7D01G110100 chr7D 82.406 557 45 22 872 1411 68806091 68805571 9.820000e-119 436.0
6 TraesCS7D01G110100 chr7D 89.851 335 23 7 998 1325 68914053 68913723 9.890000e-114 420.0
7 TraesCS7D01G110100 chr7D 83.795 469 41 22 815 1253 68924369 68923906 1.660000e-111 412.0
8 TraesCS7D01G110100 chr7D 84.588 279 36 5 1666 1940 68911531 68911256 1.050000e-68 270.0
9 TraesCS7D01G110100 chr7D 92.784 97 7 0 776 872 66484525 66484621 8.620000e-30 141.0
10 TraesCS7D01G110100 chr5D 94.987 758 27 5 2 752 36487307 36488060 0.000000e+00 1179.0
11 TraesCS7D01G110100 chr2B 94.875 761 28 4 2 755 25740812 25740056 0.000000e+00 1179.0
12 TraesCS7D01G110100 chr1B 94.980 757 28 3 2 751 490456513 490455760 0.000000e+00 1179.0
13 TraesCS7D01G110100 chr1B 94.612 761 31 3 2 755 185229021 185228264 0.000000e+00 1170.0
14 TraesCS7D01G110100 chr1B 94.591 758 28 3 2 752 636032783 636032032 0.000000e+00 1160.0
15 TraesCS7D01G110100 chr1B 80.847 1086 79 57 998 2046 678112521 678113514 0.000000e+00 734.0
16 TraesCS7D01G110100 chr1B 94.737 57 3 0 816 872 678107525 678107581 3.170000e-14 89.8
17 TraesCS7D01G110100 chr4A 94.641 765 30 4 2 759 583935072 583935832 0.000000e+00 1175.0
18 TraesCS7D01G110100 chr5B 94.730 759 30 3 2 753 115906169 115905414 0.000000e+00 1171.0
19 TraesCS7D01G110100 chr3B 94.848 757 28 5 2 751 537418991 537418239 0.000000e+00 1171.0
20 TraesCS7D01G110100 chr2D 94.481 761 31 6 2 754 621668631 621667874 0.000000e+00 1162.0
21 TraesCS7D01G110100 chr1D 80.547 1316 109 62 816 2061 486922273 486923511 0.000000e+00 876.0
22 TraesCS7D01G110100 chr7A 90.862 580 38 7 1739 2315 74604477 74603910 0.000000e+00 763.0
23 TraesCS7D01G110100 chr7A 85.940 633 39 18 971 1578 74610798 74610191 4.200000e-177 630.0
24 TraesCS7D01G110100 chr7A 84.743 662 40 26 815 1434 70893990 70894632 7.070000e-170 606.0
25 TraesCS7D01G110100 chr7A 89.452 493 35 9 1700 2190 71119723 71120200 7.070000e-170 606.0
26 TraesCS7D01G110100 chr7A 84.601 526 52 15 810 1319 71118517 71119029 1.600000e-136 496.0
27 TraesCS7D01G110100 chr7A 88.378 370 21 5 971 1325 74596500 74596138 2.130000e-115 425.0
28 TraesCS7D01G110100 chr7A 82.294 497 40 18 996 1483 71110261 71110718 1.000000e-103 387.0
29 TraesCS7D01G110100 chr7A 95.480 177 8 0 1665 1841 74608659 74608483 1.350000e-72 283.0
30 TraesCS7D01G110100 chr7A 84.733 262 30 7 1666 1920 74595412 74595154 1.060000e-63 254.0
31 TraesCS7D01G110100 chr7B 91.051 514 33 5 1806 2315 9814629 9814125 0.000000e+00 682.0
32 TraesCS7D01G110100 chr7B 84.946 651 50 14 1666 2315 10104874 10104271 1.180000e-172 616.0
33 TraesCS7D01G110100 chr7B 85.045 448 45 16 971 1408 7727881 7728316 9.820000e-119 436.0
34 TraesCS7D01G110100 chr7B 86.579 380 38 7 952 1325 10174975 10174603 7.700000e-110 407.0
35 TraesCS7D01G110100 chr7B 90.000 300 24 2 971 1270 10241548 10241255 1.300000e-102 383.0
36 TraesCS7D01G110100 chr7B 85.028 354 42 8 1690 2035 7558545 7558895 1.320000e-92 350.0
37 TraesCS7D01G110100 chr7B 94.350 177 10 0 1665 1841 10240919 10240743 2.930000e-69 272.0
38 TraesCS7D01G110100 chr7B 92.784 97 5 1 776 872 10235062 10234968 3.100000e-29 139.0
39 TraesCS7D01G110100 chr7B 76.412 301 25 23 1368 1667 10241197 10240942 1.120000e-23 121.0
40 TraesCS7D01G110100 chr7B 93.548 62 4 0 811 872 10241776 10241715 2.450000e-15 93.5
41 TraesCS7D01G110100 chr7B 94.828 58 3 0 815 872 8445979 8446036 8.810000e-15 91.6
42 TraesCS7D01G110100 chr7B 93.750 48 3 0 824 871 10190834 10190787 3.190000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G110100 chr7D 66512516 66514830 2314 False 4276.000 4276 100.0000 1 2315 1 chr7D.!!$F1 2314
1 TraesCS7D01G110100 chr7D 68804105 68806091 1986 True 532.000 628 87.4950 872 2315 2 chr7D.!!$R2 1443
2 TraesCS7D01G110100 chr7D 68934648 68935168 520 True 521.000 521 85.3160 971 1487 1 chr7D.!!$R1 516
3 TraesCS7D01G110100 chr7D 68922451 68924369 1918 True 481.500 551 84.0510 815 2259 2 chr7D.!!$R4 1444
4 TraesCS7D01G110100 chr7D 68911256 68914053 2797 True 345.000 420 87.2195 998 1940 2 chr7D.!!$R3 942
5 TraesCS7D01G110100 chr7D 66484525 66485551 1026 False 337.500 534 86.4760 776 1746 2 chr7D.!!$F2 970
6 TraesCS7D01G110100 chr5D 36487307 36488060 753 False 1179.000 1179 94.9870 2 752 1 chr5D.!!$F1 750
7 TraesCS7D01G110100 chr2B 25740056 25740812 756 True 1179.000 1179 94.8750 2 755 1 chr2B.!!$R1 753
8 TraesCS7D01G110100 chr1B 490455760 490456513 753 True 1179.000 1179 94.9800 2 751 1 chr1B.!!$R2 749
9 TraesCS7D01G110100 chr1B 185228264 185229021 757 True 1170.000 1170 94.6120 2 755 1 chr1B.!!$R1 753
10 TraesCS7D01G110100 chr1B 636032032 636032783 751 True 1160.000 1160 94.5910 2 752 1 chr1B.!!$R3 750
11 TraesCS7D01G110100 chr1B 678112521 678113514 993 False 734.000 734 80.8470 998 2046 1 chr1B.!!$F2 1048
12 TraesCS7D01G110100 chr4A 583935072 583935832 760 False 1175.000 1175 94.6410 2 759 1 chr4A.!!$F1 757
13 TraesCS7D01G110100 chr5B 115905414 115906169 755 True 1171.000 1171 94.7300 2 753 1 chr5B.!!$R1 751
14 TraesCS7D01G110100 chr3B 537418239 537418991 752 True 1171.000 1171 94.8480 2 751 1 chr3B.!!$R1 749
15 TraesCS7D01G110100 chr2D 621667874 621668631 757 True 1162.000 1162 94.4810 2 754 1 chr2D.!!$R1 752
16 TraesCS7D01G110100 chr1D 486922273 486923511 1238 False 876.000 876 80.5470 816 2061 1 chr1D.!!$F1 1245
17 TraesCS7D01G110100 chr7A 74603910 74604477 567 True 763.000 763 90.8620 1739 2315 1 chr7A.!!$R1 576
18 TraesCS7D01G110100 chr7A 70893990 70894632 642 False 606.000 606 84.7430 815 1434 1 chr7A.!!$F1 619
19 TraesCS7D01G110100 chr7A 71118517 71120200 1683 False 551.000 606 87.0265 810 2190 2 chr7A.!!$F3 1380
20 TraesCS7D01G110100 chr7A 74608483 74610798 2315 True 456.500 630 90.7100 971 1841 2 chr7A.!!$R3 870
21 TraesCS7D01G110100 chr7A 74595154 74596500 1346 True 339.500 425 86.5555 971 1920 2 chr7A.!!$R2 949
22 TraesCS7D01G110100 chr7B 9814125 9814629 504 True 682.000 682 91.0510 1806 2315 1 chr7B.!!$R1 509
23 TraesCS7D01G110100 chr7B 10104271 10104874 603 True 616.000 616 84.9460 1666 2315 1 chr7B.!!$R2 649
24 TraesCS7D01G110100 chr7B 10240743 10241776 1033 True 217.375 383 88.5775 811 1841 4 chr7B.!!$R6 1030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 877 0.29782 CGACTCGTTAATGGCTTCGC 59.702 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 5757 2.969238 CCGGATGTCGATGCAGCC 60.969 66.667 0.0 0.39 42.43 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.266055 GGTTGAGGGAGACGCTGG 59.734 66.667 0.00 0.00 0.00 4.85
173 174 2.328639 GATCTCGTCGAGGTCGCC 59.671 66.667 19.18 0.00 39.60 5.54
478 486 4.478371 CATGCCCTCTCAGCGCCA 62.478 66.667 2.29 0.00 0.00 5.69
619 627 1.613630 ACACAGGGCTCCGGAGATT 60.614 57.895 35.69 15.95 0.00 2.40
647 655 6.436738 TGTGTTATGGTTGTCTTAGGGTAA 57.563 37.500 0.00 0.00 0.00 2.85
671 679 4.841813 TCTAGGTGTTCATGGTCCTTTGTA 59.158 41.667 0.00 0.00 0.00 2.41
699 707 4.034048 CGTTTCAGTGTGCTTGTAAGAGTT 59.966 41.667 0.00 0.00 0.00 3.01
701 709 6.073765 CGTTTCAGTGTGCTTGTAAGAGTTAT 60.074 38.462 0.00 0.00 0.00 1.89
702 710 7.518370 CGTTTCAGTGTGCTTGTAAGAGTTATT 60.518 37.037 0.00 0.00 0.00 1.40
703 711 8.770828 GTTTCAGTGTGCTTGTAAGAGTTATTA 58.229 33.333 0.00 0.00 0.00 0.98
704 712 8.896320 TTCAGTGTGCTTGTAAGAGTTATTAA 57.104 30.769 0.00 0.00 0.00 1.40
791 802 3.492102 AAATCAGCCACCTATGCGTAT 57.508 42.857 0.00 0.00 0.00 3.06
866 877 0.297820 CGACTCGTTAATGGCTTCGC 59.702 55.000 0.00 0.00 0.00 4.70
890 919 2.992114 AAGAGGAGCCGCAGTCGT 60.992 61.111 0.00 0.00 0.00 4.34
895 924 2.881352 GAGCCGCAGTCGTAGTGC 60.881 66.667 0.00 5.04 41.02 4.40
896 925 4.436998 AGCCGCAGTCGTAGTGCC 62.437 66.667 8.47 0.00 41.38 5.01
897 926 4.436998 GCCGCAGTCGTAGTGCCT 62.437 66.667 8.47 0.00 41.38 4.75
900 932 2.202623 GCAGTCGTAGTGCCTCGG 60.203 66.667 4.03 0.00 38.58 4.63
953 993 1.268113 CCAACACACATCGCGTTTGC 61.268 55.000 5.77 0.00 37.91 3.68
958 998 1.163420 ACACATCGCGTTTGCCTGAA 61.163 50.000 5.77 0.00 38.08 3.02
969 1039 1.826340 TTGCCTGAACCTAGCTGCGA 61.826 55.000 0.00 0.00 0.00 5.10
986 1056 2.046892 ACTGCGATCTGGTGGTGC 60.047 61.111 0.00 0.00 0.00 5.01
991 1081 1.226802 CGATCTGGTGGTGCTCGAG 60.227 63.158 8.45 8.45 0.00 4.04
992 1082 1.657751 CGATCTGGTGGTGCTCGAGA 61.658 60.000 18.75 0.00 0.00 4.04
994 1084 1.137872 GATCTGGTGGTGCTCGAGAAT 59.862 52.381 18.75 0.00 0.00 2.40
995 1085 0.976641 TCTGGTGGTGCTCGAGAATT 59.023 50.000 18.75 0.00 0.00 2.17
996 1086 1.066858 TCTGGTGGTGCTCGAGAATTC 60.067 52.381 18.75 2.98 0.00 2.17
1050 1144 2.046892 GCTCAGCGGAAGAAGCCA 60.047 61.111 0.00 0.00 34.64 4.75
1054 1148 4.008933 AGCGGAAGAAGCCAGCGT 62.009 61.111 0.00 0.00 34.29 5.07
1325 1455 1.858091 GATGCCTGATCGATCGTGTT 58.142 50.000 20.03 4.34 0.00 3.32
1327 1457 0.530288 TGCCTGATCGATCGTGTTCA 59.470 50.000 20.03 14.87 0.00 3.18
1328 1458 1.067213 TGCCTGATCGATCGTGTTCAA 60.067 47.619 20.03 0.14 0.00 2.69
1329 1459 2.205074 GCCTGATCGATCGTGTTCAAT 58.795 47.619 20.03 0.00 0.00 2.57
1428 3068 6.763135 TCTCTCGAAATTGTATTGATTGGAGG 59.237 38.462 0.00 0.00 0.00 4.30
1434 3074 6.699575 AATTGTATTGATTGGAGGCTGTAC 57.300 37.500 0.00 0.00 0.00 2.90
1465 3151 1.066215 TCATGTACCTCTGTTGCGCAT 60.066 47.619 12.75 0.00 0.00 4.73
1466 3152 1.328680 CATGTACCTCTGTTGCGCATC 59.671 52.381 12.75 12.06 0.00 3.91
1496 3183 5.291614 GCTCATGAGTTCTGAACTTCTGATC 59.708 44.000 22.80 18.15 43.03 2.92
1502 3189 6.014755 TGAGTTCTGAACTTCTGATCATCAGT 60.015 38.462 22.80 10.92 42.61 3.41
1503 3190 6.397272 AGTTCTGAACTTCTGATCATCAGTC 58.603 40.000 17.00 5.38 39.04 3.51
1505 3192 6.350629 TCTGAACTTCTGATCATCAGTCAA 57.649 37.500 14.56 1.74 44.58 3.18
1507 3194 7.040494 TCTGAACTTCTGATCATCAGTCAATC 58.960 38.462 14.56 9.69 44.58 2.67
1508 3195 6.944096 TGAACTTCTGATCATCAGTCAATCT 58.056 36.000 14.56 0.00 44.58 2.40
1509 3196 7.392418 TGAACTTCTGATCATCAGTCAATCTT 58.608 34.615 14.56 0.00 44.58 2.40
1510 3197 7.333672 TGAACTTCTGATCATCAGTCAATCTTG 59.666 37.037 14.56 0.79 44.58 3.02
1511 3198 6.709281 ACTTCTGATCATCAGTCAATCTTGT 58.291 36.000 14.56 1.33 44.58 3.16
1512 3199 6.594547 ACTTCTGATCATCAGTCAATCTTGTG 59.405 38.462 14.56 0.00 44.58 3.33
1513 3200 4.874396 TCTGATCATCAGTCAATCTTGTGC 59.126 41.667 14.56 0.00 44.58 4.57
1514 3201 4.581868 TGATCATCAGTCAATCTTGTGCA 58.418 39.130 0.00 0.00 0.00 4.57
1624 4569 5.258051 AGAGAGTACCTTGTTGTCTCTAGG 58.742 45.833 6.74 0.00 41.74 3.02
1673 5530 2.778309 AAGACGCTCTGCAGACAGGC 62.778 60.000 13.74 14.32 44.59 4.85
1861 5757 6.016276 GGAGTCCTGCTCTTATCTTTCTCTAG 60.016 46.154 0.41 0.00 43.62 2.43
1869 5765 6.095432 TCTTATCTTTCTCTAGGCTGCATC 57.905 41.667 0.50 0.00 0.00 3.91
1966 5870 8.102047 CAGGCAATCTTTGGAGAAGATCTATAT 58.898 37.037 0.00 0.00 36.07 0.86
1967 5871 9.331466 AGGCAATCTTTGGAGAAGATCTATATA 57.669 33.333 0.00 0.00 36.07 0.86
2183 6120 4.500887 CGTGACTAAGTTGGGTTTCTGAGA 60.501 45.833 0.00 0.00 0.00 3.27
2290 6237 5.897377 AAGTAATGATTTTCTCCCCAACG 57.103 39.130 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.248289 CCCTAACCCTACCACACACG 59.752 60.000 0.00 0.00 0.00 4.49
173 174 1.153168 CCTCCAACCACCATAGCCG 60.153 63.158 0.00 0.00 0.00 5.52
208 209 1.202855 CGCCCATCTGAGGATCCAAAT 60.203 52.381 15.82 0.00 0.00 2.32
477 485 2.810852 GCTTCCTCCTTTCTTGACACTG 59.189 50.000 0.00 0.00 0.00 3.66
478 486 2.439507 TGCTTCCTCCTTTCTTGACACT 59.560 45.455 0.00 0.00 0.00 3.55
619 627 6.488683 CCCTAAGACAACCATAACACAAGAAA 59.511 38.462 0.00 0.00 0.00 2.52
647 655 4.289672 ACAAAGGACCATGAACACCTAGAT 59.710 41.667 0.00 0.00 32.06 1.98
671 679 2.159254 ACAAGCACACTGAAACGCAAAT 60.159 40.909 0.00 0.00 0.00 2.32
701 709 9.701098 AATCACGAATCAGTACAAAGTAGTTAA 57.299 29.630 0.00 0.00 0.00 2.01
702 710 9.701098 AAATCACGAATCAGTACAAAGTAGTTA 57.299 29.630 0.00 0.00 0.00 2.24
703 711 8.495949 CAAATCACGAATCAGTACAAAGTAGTT 58.504 33.333 0.00 0.00 0.00 2.24
704 712 7.870954 TCAAATCACGAATCAGTACAAAGTAGT 59.129 33.333 0.00 0.00 0.00 2.73
769 780 2.446435 ACGCATAGGTGGCTGATTTTT 58.554 42.857 0.00 0.00 0.00 1.94
770 781 2.128771 ACGCATAGGTGGCTGATTTT 57.871 45.000 0.00 0.00 0.00 1.82
771 782 3.403038 GATACGCATAGGTGGCTGATTT 58.597 45.455 0.00 0.00 0.00 2.17
772 783 2.289694 GGATACGCATAGGTGGCTGATT 60.290 50.000 0.00 0.00 0.00 2.57
773 784 1.276421 GGATACGCATAGGTGGCTGAT 59.724 52.381 0.00 0.00 0.00 2.90
774 785 0.679505 GGATACGCATAGGTGGCTGA 59.320 55.000 0.00 0.00 0.00 4.26
781 792 1.079819 CGCCTGGGATACGCATAGG 60.080 63.158 0.00 0.00 37.60 2.57
783 794 1.532078 TCCGCCTGGGATACGCATA 60.532 57.895 0.00 0.00 40.94 3.14
791 802 1.152735 CTAGCTAGTCCGCCTGGGA 60.153 63.158 12.92 0.00 44.68 4.37
866 877 2.507992 CGGCTCCTCTTCGTGCAG 60.508 66.667 0.00 0.00 0.00 4.41
890 919 1.640917 AAAGGTTCTCCGAGGCACTA 58.359 50.000 0.00 0.00 41.55 2.74
895 924 4.120589 GTGCTTATAAAGGTTCTCCGAGG 58.879 47.826 0.00 0.00 39.05 4.63
896 925 3.797256 CGTGCTTATAAAGGTTCTCCGAG 59.203 47.826 0.00 0.00 39.05 4.63
897 926 3.777478 CGTGCTTATAAAGGTTCTCCGA 58.223 45.455 0.00 0.00 39.05 4.55
900 932 2.612672 GGGCGTGCTTATAAAGGTTCTC 59.387 50.000 0.00 0.00 0.00 2.87
953 993 0.459237 CAGTCGCAGCTAGGTTCAGG 60.459 60.000 0.00 0.00 0.00 3.86
958 998 2.343163 GATCGCAGTCGCAGCTAGGT 62.343 60.000 0.00 0.00 38.40 3.08
969 1039 2.046892 GCACCACCAGATCGCAGT 60.047 61.111 0.00 0.00 0.00 4.40
991 1081 0.230769 CGCTTCGCCATCTCGAATTC 59.769 55.000 0.00 0.00 45.81 2.17
992 1082 2.301505 CGCTTCGCCATCTCGAATT 58.698 52.632 0.00 0.00 45.81 2.17
1054 1148 4.329545 GGCCGTGTCCAGCTTGGA 62.330 66.667 1.25 1.25 45.98 3.53
1069 1163 2.753446 GAAGGGGCAGCAGAAGGC 60.753 66.667 0.00 0.00 45.30 4.35
1110 1204 1.639298 GCTTGAGGTCGATGGTGCAC 61.639 60.000 8.80 8.80 0.00 4.57
1157 1251 3.368531 GGTGTGGTAGAACTCCTGACATC 60.369 52.174 0.00 0.00 32.17 3.06
1158 1252 2.567615 GGTGTGGTAGAACTCCTGACAT 59.432 50.000 0.00 0.00 32.17 3.06
1161 1255 1.968493 GTGGTGTGGTAGAACTCCTGA 59.032 52.381 0.00 0.00 35.25 3.86
1325 1455 5.687770 TGAAAGCAAACTCGATCAATTGA 57.312 34.783 11.26 11.26 0.00 2.57
1327 1457 5.183713 TCCATGAAAGCAAACTCGATCAATT 59.816 36.000 0.00 0.00 0.00 2.32
1328 1458 4.701651 TCCATGAAAGCAAACTCGATCAAT 59.298 37.500 0.00 0.00 0.00 2.57
1329 1459 4.071423 TCCATGAAAGCAAACTCGATCAA 58.929 39.130 0.00 0.00 0.00 2.57
1428 3068 4.701765 ACATGATCAATCAGGAGTACAGC 58.298 43.478 11.27 0.00 40.76 4.40
1434 3074 5.070180 ACAGAGGTACATGATCAATCAGGAG 59.930 44.000 11.27 0.97 40.76 3.69
1465 3151 3.081804 TCAGAACTCATGAGCTACACGA 58.918 45.455 22.83 9.06 0.00 4.35
1466 3152 3.494045 TCAGAACTCATGAGCTACACG 57.506 47.619 22.83 6.85 0.00 4.49
1496 3183 7.493645 TCTTATACTGCACAAGATTGACTGATG 59.506 37.037 0.00 0.00 0.00 3.07
1502 3189 6.048732 TGGTCTTATACTGCACAAGATTGA 57.951 37.500 0.00 0.00 31.40 2.57
1503 3190 6.722301 CATGGTCTTATACTGCACAAGATTG 58.278 40.000 0.00 0.00 31.40 2.67
1505 3192 4.818546 GCATGGTCTTATACTGCACAAGAT 59.181 41.667 0.00 0.00 31.40 2.40
1507 3194 3.940852 TGCATGGTCTTATACTGCACAAG 59.059 43.478 0.00 0.00 37.88 3.16
1508 3195 3.949132 TGCATGGTCTTATACTGCACAA 58.051 40.909 0.00 0.00 37.88 3.33
1509 3196 3.625649 TGCATGGTCTTATACTGCACA 57.374 42.857 0.00 0.00 37.88 4.57
1510 3197 3.879295 ACATGCATGGTCTTATACTGCAC 59.121 43.478 29.41 0.00 44.73 4.57
1511 3198 4.155063 ACATGCATGGTCTTATACTGCA 57.845 40.909 29.41 0.00 45.84 4.41
1512 3199 5.178252 CAGTACATGCATGGTCTTATACTGC 59.822 44.000 29.41 9.56 33.91 4.40
1513 3200 6.515832 TCAGTACATGCATGGTCTTATACTG 58.484 40.000 29.36 29.36 39.62 2.74
1514 3201 6.731292 TCAGTACATGCATGGTCTTATACT 57.269 37.500 29.41 21.78 0.00 2.12
1602 4546 5.254901 TCCTAGAGACAACAAGGTACTCTC 58.745 45.833 0.00 0.00 38.49 3.20
1631 4577 2.512485 TCTTGAACCGTGCGAACTTA 57.488 45.000 0.00 0.00 0.00 2.24
1642 4588 2.872858 AGAGCGTCTTTGTTCTTGAACC 59.127 45.455 10.51 0.00 0.00 3.62
1861 5757 2.969238 CCGGATGTCGATGCAGCC 60.969 66.667 0.00 0.39 42.43 4.85
1914 5810 9.255304 GTGATATGATTCCTTACTCTTTCACTC 57.745 37.037 0.00 0.00 0.00 3.51
2157 6094 4.446719 CAGAAACCCAACTTAGTCACGTAC 59.553 45.833 0.00 0.00 0.00 3.67
2158 6095 4.341806 TCAGAAACCCAACTTAGTCACGTA 59.658 41.667 0.00 0.00 0.00 3.57
2159 6096 3.133362 TCAGAAACCCAACTTAGTCACGT 59.867 43.478 0.00 0.00 0.00 4.49
2160 6097 3.724374 TCAGAAACCCAACTTAGTCACG 58.276 45.455 0.00 0.00 0.00 4.35
2161 6098 4.957296 TCTCAGAAACCCAACTTAGTCAC 58.043 43.478 0.00 0.00 0.00 3.67
2162 6099 5.280011 GGATCTCAGAAACCCAACTTAGTCA 60.280 44.000 0.00 0.00 0.00 3.41
2163 6100 5.179533 GGATCTCAGAAACCCAACTTAGTC 58.820 45.833 0.00 0.00 0.00 2.59
2164 6101 4.597507 TGGATCTCAGAAACCCAACTTAGT 59.402 41.667 0.00 0.00 0.00 2.24
2167 6104 4.453480 TTGGATCTCAGAAACCCAACTT 57.547 40.909 3.23 0.00 32.51 2.66
2290 6237 3.935828 GGTGATCTGAAGCTAAACTGGTC 59.064 47.826 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.