Multiple sequence alignment - TraesCS7D01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G109800 chr7D 100.000 3824 0 0 1 3824 66402379 66398556 0.000000e+00 7062.0
1 TraesCS7D01G109800 chr7D 93.049 892 37 9 1797 2675 68988794 68989673 0.000000e+00 1280.0
2 TraesCS7D01G109800 chr7D 93.119 218 10 1 2849 3061 227048843 227049060 7.970000e-82 315.0
3 TraesCS7D01G109800 chr7D 91.630 227 13 3 2839 3060 326052767 326052542 3.710000e-80 309.0
4 TraesCS7D01G109800 chr7D 78.090 534 69 28 2036 2538 65787800 65787284 1.040000e-75 294.0
5 TraesCS7D01G109800 chr7D 93.103 174 11 1 3652 3824 246621621 246621794 1.760000e-63 254.0
6 TraesCS7D01G109800 chr7D 87.200 125 16 0 2037 2161 64413678 64413802 3.980000e-30 143.0
7 TraesCS7D01G109800 chr7D 90.291 103 7 3 1299 1399 68988688 68988789 8.620000e-27 132.0
8 TraesCS7D01G109800 chr7D 90.769 65 5 1 1407 1470 18489586 18489522 6.810000e-13 86.1
9 TraesCS7D01G109800 chr7D 91.489 47 4 0 1320 1366 65788156 65788110 8.870000e-07 65.8
10 TraesCS7D01G109800 chr3D 97.048 1321 21 8 1 1309 134961345 134962659 0.000000e+00 2207.0
11 TraesCS7D01G109800 chr3D 96.816 1319 28 6 1 1309 56895462 56896776 0.000000e+00 2191.0
12 TraesCS7D01G109800 chr3D 87.613 331 26 7 1 316 519884409 519884079 1.680000e-98 370.0
13 TraesCS7D01G109800 chr3D 88.291 316 23 6 2 304 45417942 45418256 2.170000e-97 366.0
14 TraesCS7D01G109800 chr3D 89.347 291 29 2 1509 1797 594084388 594084678 7.810000e-97 364.0
15 TraesCS7D01G109800 chr3D 86.970 330 28 7 1 316 354324114 354324442 1.310000e-94 357.0
16 TraesCS7D01G109800 chr3D 93.088 217 10 1 2849 3060 524311887 524311671 2.870000e-81 313.0
17 TraesCS7D01G109800 chr3D 85.714 259 32 5 3265 3521 226986764 226986509 6.300000e-68 268.0
18 TraesCS7D01G109800 chr3D 93.182 176 9 2 3652 3824 401222525 401222350 4.900000e-64 255.0
19 TraesCS7D01G109800 chr3D 92.045 176 11 2 3652 3824 556709489 556709314 1.060000e-60 244.0
20 TraesCS7D01G109800 chr3D 88.889 63 6 1 1407 1468 18926472 18926410 4.100000e-10 76.8
21 TraesCS7D01G109800 chr4D 96.601 1324 29 6 1 1309 435852390 435853712 0.000000e+00 2182.0
22 TraesCS7D01G109800 chr4D 91.554 296 24 1 997 1292 282786103 282786397 1.280000e-109 407.0
23 TraesCS7D01G109800 chr4D 83.369 469 45 19 552 1012 282785644 282786087 1.650000e-108 403.0
24 TraesCS7D01G109800 chr4D 88.088 319 22 7 997 1313 282809419 282809723 7.810000e-97 364.0
25 TraesCS7D01G109800 chr4D 92.035 226 12 2 2840 3060 45391618 45391842 2.870000e-81 313.0
26 TraesCS7D01G109800 chr4D 86.538 260 26 8 3266 3521 428936420 428936166 1.050000e-70 278.0
27 TraesCS7D01G109800 chr4D 86.275 255 30 5 3266 3518 479154484 479154233 4.870000e-69 272.0
28 TraesCS7D01G109800 chr5A 91.468 1090 54 11 1 1071 528297073 528296004 0.000000e+00 1461.0
29 TraesCS7D01G109800 chr5A 94.422 251 13 1 1057 1307 528295991 528295742 5.990000e-103 385.0
30 TraesCS7D01G109800 chr5A 87.200 250 29 3 3264 3513 130535254 130535500 8.090000e-72 281.0
31 TraesCS7D01G109800 chr5A 89.231 65 6 1 1407 1470 43283059 43282995 3.170000e-11 80.5
32 TraesCS7D01G109800 chr7B 90.875 1052 46 23 1834 2846 7605079 7604039 0.000000e+00 1365.0
33 TraesCS7D01G109800 chr7B 95.619 662 24 5 3165 3824 7603939 7603281 0.000000e+00 1057.0
34 TraesCS7D01G109800 chr7B 97.273 220 5 1 2252 2471 10569219 10569437 4.670000e-99 372.0
35 TraesCS7D01G109800 chr7B 85.714 357 45 4 1443 1796 639682741 639682388 4.670000e-99 372.0
36 TraesCS7D01G109800 chr7B 92.523 214 13 1 1925 2138 10567477 10567687 1.730000e-78 303.0
37 TraesCS7D01G109800 chr7B 81.419 296 47 7 1512 1802 106490661 106490369 6.390000e-58 235.0
38 TraesCS7D01G109800 chr7B 89.412 170 18 0 1800 1969 5930009 5930178 8.320000e-52 215.0
39 TraesCS7D01G109800 chr7B 87.719 171 18 3 373 542 295086291 295086459 3.010000e-46 196.0
40 TraesCS7D01G109800 chr7B 99.057 106 1 0 1797 1902 10567377 10567482 1.400000e-44 191.0
41 TraesCS7D01G109800 chr7B 97.959 98 2 0 1308 1405 10567281 10567378 1.830000e-38 171.0
42 TraesCS7D01G109800 chr7B 88.710 124 14 0 2037 2160 5930213 5930336 6.620000e-33 152.0
43 TraesCS7D01G109800 chr7B 100.000 42 0 0 1797 1838 7612430 7612389 1.140000e-10 78.7
44 TraesCS7D01G109800 chr7A 88.877 899 46 30 1797 2669 70831436 70830566 0.000000e+00 1057.0
45 TraesCS7D01G109800 chr7A 86.264 546 38 19 1797 2332 74648786 74649304 3.340000e-155 558.0
46 TraesCS7D01G109800 chr7A 83.195 482 31 24 2390 2840 74650863 74651325 2.770000e-106 396.0
47 TraesCS7D01G109800 chr7A 80.769 520 75 17 2036 2538 70207420 70206909 2.160000e-102 383.0
48 TraesCS7D01G109800 chr7A 95.327 107 5 0 1299 1405 74648681 74648787 1.830000e-38 171.0
49 TraesCS7D01G109800 chr7A 96.939 98 3 0 1308 1405 70831532 70831435 8.500000e-37 165.0
50 TraesCS7D01G109800 chr7A 88.000 125 15 0 2037 2161 68200552 68200676 8.560000e-32 148.0
51 TraesCS7D01G109800 chr7A 89.691 97 10 0 1873 1969 68200421 68200517 1.440000e-24 124.0
52 TraesCS7D01G109800 chr7A 77.966 118 26 0 2419 2536 68191947 68192064 1.470000e-09 75.0
53 TraesCS7D01G109800 chr1A 93.429 487 24 4 729 1215 108309533 108310011 0.000000e+00 715.0
54 TraesCS7D01G109800 chr1A 83.204 774 70 30 552 1307 415304573 415305304 0.000000e+00 654.0
55 TraesCS7D01G109800 chr1A 94.798 173 8 1 1135 1307 108310009 108310180 6.300000e-68 268.0
56 TraesCS7D01G109800 chr2A 93.312 314 19 2 997 1309 753101601 753101913 2.690000e-126 462.0
57 TraesCS7D01G109800 chr2A 84.083 289 33 9 552 835 753099765 753100045 2.260000e-67 267.0
58 TraesCS7D01G109800 chr2A 88.889 162 10 3 852 1011 753101431 753101586 3.900000e-45 193.0
59 TraesCS7D01G109800 chr2A 95.385 65 3 0 1406 1470 59870352 59870288 1.880000e-18 104.0
60 TraesCS7D01G109800 chr2D 88.889 360 34 6 1443 1797 437961223 437960865 4.540000e-119 438.0
61 TraesCS7D01G109800 chr2D 88.699 292 26 6 1512 1799 107846029 107845741 2.190000e-92 350.0
62 TraesCS7D01G109800 chr2D 95.455 220 5 1 2843 3057 61321163 61321382 2.830000e-91 346.0
63 TraesCS7D01G109800 chr2D 92.727 220 11 1 2843 3057 284560176 284559957 2.870000e-81 313.0
64 TraesCS7D01G109800 chr2D 92.045 176 11 2 3652 3824 511021819 511021994 1.060000e-60 244.0
65 TraesCS7D01G109800 chr2D 85.135 148 20 1 373 520 624917564 624917419 2.380000e-32 150.0
66 TraesCS7D01G109800 chr2D 96.923 65 2 0 1406 1470 437975791 437975727 4.040000e-20 110.0
67 TraesCS7D01G109800 chr6D 86.559 372 36 9 1 363 467122643 467123009 7.700000e-107 398.0
68 TraesCS7D01G109800 chr6D 94.977 219 6 1 2844 3057 18708847 18709065 4.730000e-89 339.0
69 TraesCS7D01G109800 chr6D 85.256 312 27 6 1512 1804 438974569 438974258 1.730000e-78 303.0
70 TraesCS7D01G109800 chr6D 93.678 174 10 1 3652 3824 309741900 309741727 3.790000e-65 259.0
71 TraesCS7D01G109800 chr3A 88.328 317 23 7 1 304 9290651 9290966 6.040000e-98 368.0
72 TraesCS7D01G109800 chr3A 89.231 65 6 1 1407 1470 8237520 8237584 3.170000e-11 80.5
73 TraesCS7D01G109800 chrUn 85.345 348 47 4 1443 1787 220231694 220231348 1.310000e-94 357.0
74 TraesCS7D01G109800 chr3B 83.820 377 39 9 1443 1797 89590172 89589796 4.730000e-89 339.0
75 TraesCS7D01G109800 chr3B 86.047 258 32 4 3266 3521 507455404 507455149 1.350000e-69 274.0
76 TraesCS7D01G109800 chr6B 87.456 287 34 2 1509 1793 27907864 27908150 2.850000e-86 329.0
77 TraesCS7D01G109800 chr6B 88.517 209 18 5 1595 1799 76005992 76005786 8.200000e-62 248.0
78 TraesCS7D01G109800 chr1D 91.667 228 13 2 2836 3058 442835679 442835905 1.030000e-80 311.0
79 TraesCS7D01G109800 chr1D 86.275 255 31 4 3266 3518 97740152 97740404 1.350000e-69 274.0
80 TraesCS7D01G109800 chr1D 93.182 176 9 2 3652 3824 410027348 410027173 4.900000e-64 255.0
81 TraesCS7D01G109800 chr1D 91.954 174 13 1 3652 3824 341710279 341710452 3.820000e-60 243.0
82 TraesCS7D01G109800 chr1D 86.188 181 21 4 373 552 100080590 100080413 3.900000e-45 193.0
83 TraesCS7D01G109800 chr1B 90.909 231 15 2 2836 3060 676078540 676078310 4.800000e-79 305.0
84 TraesCS7D01G109800 chr1B 89.231 65 6 1 1407 1470 12826324 12826260 3.170000e-11 80.5
85 TraesCS7D01G109800 chr1B 87.692 65 7 1 1407 1470 7765753 7765689 1.470000e-09 75.0
86 TraesCS7D01G109800 chr2B 81.675 382 47 7 1440 1799 35023062 35023442 2.890000e-76 296.0
87 TraesCS7D01G109800 chr2B 87.160 257 30 3 3266 3521 357919818 357919564 4.830000e-74 289.0
88 TraesCS7D01G109800 chr2B 86.853 251 29 4 3263 3512 647703281 647703528 1.050000e-70 278.0
89 TraesCS7D01G109800 chr2B 85.549 173 24 1 373 545 206759154 206758983 3.040000e-41 180.0
90 TraesCS7D01G109800 chr2B 81.967 183 23 1 373 545 223152659 223152477 3.080000e-31 147.0
91 TraesCS7D01G109800 chr2B 89.231 65 6 1 1407 1470 628381934 628381998 3.170000e-11 80.5
92 TraesCS7D01G109800 chr5D 92.529 174 12 1 3652 3824 349456869 349457042 8.200000e-62 248.0
93 TraesCS7D01G109800 chr6A 87.500 160 20 0 1802 1961 1752588 1752747 6.520000e-43 185.0
94 TraesCS7D01G109800 chr4B 83.240 179 20 1 373 541 135819574 135819396 5.110000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G109800 chr7D 66398556 66402379 3823 True 7062.000000 7062 100.000000 1 3824 1 chr7D.!!$R2 3823
1 TraesCS7D01G109800 chr7D 68988688 68989673 985 False 706.000000 1280 91.670000 1299 2675 2 chr7D.!!$F4 1376
2 TraesCS7D01G109800 chr3D 134961345 134962659 1314 False 2207.000000 2207 97.048000 1 1309 1 chr3D.!!$F3 1308
3 TraesCS7D01G109800 chr3D 56895462 56896776 1314 False 2191.000000 2191 96.816000 1 1309 1 chr3D.!!$F2 1308
4 TraesCS7D01G109800 chr4D 435852390 435853712 1322 False 2182.000000 2182 96.601000 1 1309 1 chr4D.!!$F3 1308
5 TraesCS7D01G109800 chr4D 282785644 282786397 753 False 405.000000 407 87.461500 552 1292 2 chr4D.!!$F4 740
6 TraesCS7D01G109800 chr5A 528295742 528297073 1331 True 923.000000 1461 92.945000 1 1307 2 chr5A.!!$R2 1306
7 TraesCS7D01G109800 chr7B 7603281 7605079 1798 True 1211.000000 1365 93.247000 1834 3824 2 chr7B.!!$R4 1990
8 TraesCS7D01G109800 chr7B 10567281 10569437 2156 False 259.250000 372 96.703000 1308 2471 4 chr7B.!!$F3 1163
9 TraesCS7D01G109800 chr7A 70830566 70831532 966 True 611.000000 1057 92.908000 1308 2669 2 chr7A.!!$R2 1361
10 TraesCS7D01G109800 chr7A 70206909 70207420 511 True 383.000000 383 80.769000 2036 2538 1 chr7A.!!$R1 502
11 TraesCS7D01G109800 chr7A 74648681 74651325 2644 False 375.000000 558 88.262000 1299 2840 3 chr7A.!!$F3 1541
12 TraesCS7D01G109800 chr1A 415304573 415305304 731 False 654.000000 654 83.204000 552 1307 1 chr1A.!!$F1 755
13 TraesCS7D01G109800 chr1A 108309533 108310180 647 False 491.500000 715 94.113500 729 1307 2 chr1A.!!$F2 578
14 TraesCS7D01G109800 chr2A 753099765 753101913 2148 False 307.333333 462 88.761333 552 1309 3 chr2A.!!$F1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 546 1.830145 CACTATAAGGGGCGCCTGT 59.170 57.895 28.56 17.33 0.0 4.00 F
1646 3245 0.038526 GTCCCGACGGCCATAGTATG 60.039 60.000 8.86 2.90 0.0 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 3605 0.036105 TCGTCCCACGAGCAGTAGTA 60.036 55.0 0.00 0.00 46.73 1.82 R
3013 7626 0.039708 GTCCTACGCGTATACCTGCC 60.040 60.0 20.91 0.23 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
530 546 1.830145 CACTATAAGGGGCGCCTGT 59.170 57.895 28.56 17.33 0.00 4.00
727 751 7.500559 AGACAATCTAGATGGGAATTAGCAAAC 59.499 37.037 11.91 0.00 0.00 2.93
1228 2826 1.656818 ATCAACCCCTGCGCGAATTG 61.657 55.000 12.10 0.00 0.00 2.32
1373 2972 0.696501 AACCTACCCGACTGCCATTT 59.303 50.000 0.00 0.00 0.00 2.32
1408 3007 1.742768 CGTGAGGAGGACCATAGGC 59.257 63.158 0.00 0.00 38.94 3.93
1409 3008 1.749334 CGTGAGGAGGACCATAGGCC 61.749 65.000 0.00 0.00 38.94 5.19
1410 3009 1.457643 TGAGGAGGACCATAGGCCG 60.458 63.158 0.00 0.00 38.94 6.13
1411 3010 1.457831 GAGGAGGACCATAGGCCGT 60.458 63.158 0.00 0.00 38.94 5.68
1412 3011 0.178970 GAGGAGGACCATAGGCCGTA 60.179 60.000 0.00 0.00 38.94 4.02
1413 3012 0.178958 AGGAGGACCATAGGCCGTAG 60.179 60.000 0.00 0.00 38.94 3.51
1414 3013 1.186267 GGAGGACCATAGGCCGTAGG 61.186 65.000 8.60 8.60 43.93 3.18
1431 3030 2.633860 GGCATAGCCTTGATTCCCG 58.366 57.895 0.00 0.00 46.69 5.14
1432 3031 0.179018 GGCATAGCCTTGATTCCCGT 60.179 55.000 0.00 0.00 46.69 5.28
1433 3032 1.230324 GCATAGCCTTGATTCCCGTC 58.770 55.000 0.00 0.00 0.00 4.79
1434 3033 1.475034 GCATAGCCTTGATTCCCGTCA 60.475 52.381 0.00 0.00 0.00 4.35
1435 3034 2.487934 CATAGCCTTGATTCCCGTCAG 58.512 52.381 0.00 0.00 0.00 3.51
1436 3035 0.830648 TAGCCTTGATTCCCGTCAGG 59.169 55.000 0.00 0.00 37.24 3.86
1437 3036 0.909610 AGCCTTGATTCCCGTCAGGA 60.910 55.000 0.00 0.00 45.68 3.86
1477 3076 2.141535 CCGTAGGCATAGCTTCTGTC 57.858 55.000 0.00 0.00 46.14 3.51
1478 3077 1.683917 CCGTAGGCATAGCTTCTGTCT 59.316 52.381 8.03 8.03 46.14 3.41
1479 3078 2.101582 CCGTAGGCATAGCTTCTGTCTT 59.898 50.000 8.21 0.00 46.14 3.01
1480 3079 3.318275 CCGTAGGCATAGCTTCTGTCTTA 59.682 47.826 8.21 0.00 46.14 2.10
1481 3080 4.021894 CCGTAGGCATAGCTTCTGTCTTAT 60.022 45.833 8.21 0.00 46.14 1.73
1482 3081 5.509840 CCGTAGGCATAGCTTCTGTCTTATT 60.510 44.000 8.21 0.00 46.14 1.40
1483 3082 5.986135 CGTAGGCATAGCTTCTGTCTTATTT 59.014 40.000 8.21 0.00 29.82 1.40
1484 3083 6.480320 CGTAGGCATAGCTTCTGTCTTATTTT 59.520 38.462 8.21 0.00 29.82 1.82
1485 3084 7.011482 CGTAGGCATAGCTTCTGTCTTATTTTT 59.989 37.037 8.21 0.00 29.82 1.94
1516 3115 5.903764 TTTTCTGTTTGATTTCAATGCCG 57.096 34.783 0.00 0.00 35.55 5.69
1517 3116 4.844998 TTCTGTTTGATTTCAATGCCGA 57.155 36.364 0.00 0.00 35.55 5.54
1518 3117 4.159377 TCTGTTTGATTTCAATGCCGAC 57.841 40.909 0.00 0.00 35.55 4.79
1519 3118 2.910482 CTGTTTGATTTCAATGCCGACG 59.090 45.455 0.00 0.00 35.55 5.12
1520 3119 2.250188 GTTTGATTTCAATGCCGACGG 58.750 47.619 10.29 10.29 35.55 4.79
1542 3141 4.722855 CGTTAACCCCGTCGGCGT 62.723 66.667 9.28 0.00 36.15 5.68
1543 3142 2.571231 GTTAACCCCGTCGGCGTA 59.429 61.111 9.28 0.00 36.15 4.42
1544 3143 1.517039 GTTAACCCCGTCGGCGTAG 60.517 63.158 9.28 0.59 36.15 3.51
1545 3144 1.976474 TTAACCCCGTCGGCGTAGT 60.976 57.895 9.28 1.38 36.15 2.73
1546 3145 1.531739 TTAACCCCGTCGGCGTAGTT 61.532 55.000 16.76 16.76 36.14 2.24
1547 3146 1.933115 TAACCCCGTCGGCGTAGTTC 61.933 60.000 16.17 0.00 34.67 3.01
1548 3147 4.503314 CCCCGTCGGCGTAGTTCC 62.503 72.222 9.28 0.00 36.15 3.62
1557 3156 2.575262 CGTAGTTCCGACGCCGTC 60.575 66.667 7.29 7.29 32.89 4.79
1631 3230 1.666580 GCGTATAGCCAGAGGTCCC 59.333 63.158 0.00 0.00 40.81 4.46
1632 3231 1.957562 CGTATAGCCAGAGGTCCCG 59.042 63.158 0.00 0.00 0.00 5.14
1633 3232 0.536687 CGTATAGCCAGAGGTCCCGA 60.537 60.000 0.00 0.00 0.00 5.14
1634 3233 0.960286 GTATAGCCAGAGGTCCCGAC 59.040 60.000 0.00 0.00 0.00 4.79
1635 3234 0.536687 TATAGCCAGAGGTCCCGACG 60.537 60.000 0.00 0.00 0.00 5.12
1636 3235 3.874501 TATAGCCAGAGGTCCCGACGG 62.875 61.905 6.99 6.99 0.00 4.79
1640 3239 4.779733 AGAGGTCCCGACGGCCAT 62.780 66.667 8.86 0.00 0.00 4.40
1641 3240 2.836360 GAGGTCCCGACGGCCATA 60.836 66.667 8.86 0.00 0.00 2.74
1642 3241 2.838225 AGGTCCCGACGGCCATAG 60.838 66.667 8.86 0.00 0.00 2.23
1643 3242 3.152400 GGTCCCGACGGCCATAGT 61.152 66.667 8.86 0.00 0.00 2.12
1644 3243 1.829533 GGTCCCGACGGCCATAGTA 60.830 63.158 8.86 0.00 0.00 1.82
1645 3244 1.183676 GGTCCCGACGGCCATAGTAT 61.184 60.000 8.86 0.00 0.00 2.12
1646 3245 0.038526 GTCCCGACGGCCATAGTATG 60.039 60.000 8.86 2.90 0.00 2.39
1647 3246 1.374252 CCCGACGGCCATAGTATGC 60.374 63.158 8.86 0.81 0.00 3.14
1648 3247 1.374252 CCGACGGCCATAGTATGCC 60.374 63.158 2.24 8.71 44.41 4.40
1652 3251 4.261888 GGCCATAGTATGCCGACG 57.738 61.111 4.47 0.00 38.00 5.12
1653 3252 1.374252 GGCCATAGTATGCCGACGG 60.374 63.158 10.29 10.29 38.00 4.79
1654 3253 1.374252 GCCATAGTATGCCGACGGG 60.374 63.158 17.22 0.00 0.00 5.28
1655 3254 1.292223 CCATAGTATGCCGACGGGG 59.708 63.158 17.22 1.17 39.58 5.73
1656 3255 1.292223 CATAGTATGCCGACGGGGG 59.708 63.158 17.22 0.00 35.78 5.40
1685 3284 3.545475 GCATAGATCGACATATGCTGACG 59.455 47.826 25.52 4.42 46.92 4.35
1686 3285 2.713895 AGATCGACATATGCTGACGG 57.286 50.000 1.58 0.00 42.17 4.79
1687 3286 1.063806 GATCGACATATGCTGACGGC 58.936 55.000 1.58 0.00 42.17 5.68
1688 3287 0.676184 ATCGACATATGCTGACGGCT 59.324 50.000 7.96 0.00 42.17 5.52
1689 3288 0.459899 TCGACATATGCTGACGGCTT 59.540 50.000 7.96 3.68 42.17 4.35
1690 3289 1.134818 TCGACATATGCTGACGGCTTT 60.135 47.619 7.96 0.00 42.17 3.51
1691 3290 1.665679 CGACATATGCTGACGGCTTTT 59.334 47.619 7.96 0.00 38.98 2.27
1692 3291 2.285834 CGACATATGCTGACGGCTTTTC 60.286 50.000 7.96 0.00 38.98 2.29
1693 3292 2.939103 GACATATGCTGACGGCTTTTCT 59.061 45.455 7.96 0.00 42.39 2.52
1694 3293 4.119862 GACATATGCTGACGGCTTTTCTA 58.880 43.478 7.96 0.00 42.39 2.10
1695 3294 3.871594 ACATATGCTGACGGCTTTTCTAC 59.128 43.478 7.96 0.00 42.39 2.59
1696 3295 1.359848 ATGCTGACGGCTTTTCTACG 58.640 50.000 7.96 0.00 42.39 3.51
1697 3296 1.289109 TGCTGACGGCTTTTCTACGC 61.289 55.000 7.96 0.00 42.39 4.42
1698 3297 1.967597 GCTGACGGCTTTTCTACGCC 61.968 60.000 0.00 0.00 42.86 5.68
1699 3298 0.389948 CTGACGGCTTTTCTACGCCT 60.390 55.000 0.00 0.00 44.11 5.52
1700 3299 0.889994 TGACGGCTTTTCTACGCCTA 59.110 50.000 0.00 0.00 44.11 3.93
1701 3300 1.275505 GACGGCTTTTCTACGCCTAC 58.724 55.000 0.00 0.00 44.11 3.18
1702 3301 0.604578 ACGGCTTTTCTACGCCTACA 59.395 50.000 0.00 0.00 44.11 2.74
1703 3302 1.278238 CGGCTTTTCTACGCCTACAG 58.722 55.000 0.00 0.00 44.11 2.74
1704 3303 1.007580 GGCTTTTCTACGCCTACAGC 58.992 55.000 0.00 0.00 42.98 4.40
1705 3304 1.007580 GCTTTTCTACGCCTACAGCC 58.992 55.000 0.00 0.00 38.78 4.85
1706 3305 1.405661 GCTTTTCTACGCCTACAGCCT 60.406 52.381 0.00 0.00 38.78 4.58
1707 3306 2.271800 CTTTTCTACGCCTACAGCCTG 58.728 52.381 0.00 0.00 38.78 4.85
1708 3307 1.552578 TTTCTACGCCTACAGCCTGA 58.447 50.000 0.00 0.00 38.78 3.86
1709 3308 0.815734 TTCTACGCCTACAGCCTGAC 59.184 55.000 0.00 0.00 38.78 3.51
1710 3309 1.035932 TCTACGCCTACAGCCTGACC 61.036 60.000 0.00 0.00 38.78 4.02
1711 3310 1.000019 TACGCCTACAGCCTGACCT 60.000 57.895 0.00 0.00 38.78 3.85
1712 3311 1.320344 TACGCCTACAGCCTGACCTG 61.320 60.000 0.00 0.00 38.78 4.00
1713 3312 2.586792 GCCTACAGCCTGACCTGG 59.413 66.667 0.00 0.00 37.16 4.45
1714 3313 3.036429 GCCTACAGCCTGACCTGGG 62.036 68.421 0.00 0.00 37.16 4.45
1725 3324 4.468769 ACCTGGGCCGTCGGGATA 62.469 66.667 14.38 0.00 36.97 2.59
1726 3325 2.923035 CCTGGGCCGTCGGGATAT 60.923 66.667 14.38 0.00 35.18 1.63
1727 3326 2.343758 CTGGGCCGTCGGGATATG 59.656 66.667 14.38 0.00 34.06 1.78
1728 3327 2.445085 TGGGCCGTCGGGATATGT 60.445 61.111 14.38 0.00 34.06 2.29
1729 3328 2.342648 GGGCCGTCGGGATATGTC 59.657 66.667 14.38 0.00 34.06 3.06
1730 3329 2.342648 GGCCGTCGGGATATGTCC 59.657 66.667 14.38 0.00 44.29 4.02
1742 3341 3.786635 GGATATGTCCATCTATGCCGAC 58.213 50.000 3.16 0.00 44.42 4.79
1743 3342 3.439293 GATATGTCCATCTATGCCGACG 58.561 50.000 0.00 0.00 0.00 5.12
1744 3343 0.318441 ATGTCCATCTATGCCGACGG 59.682 55.000 10.29 10.29 0.00 4.79
1766 3365 3.822607 CCGTAGGCATAGATGAGGC 57.177 57.895 0.00 0.00 46.14 4.70
1770 3369 4.683432 GGCATAGATGAGGCCGTC 57.317 61.111 0.00 0.00 46.91 4.79
1771 3370 1.373497 GGCATAGATGAGGCCGTCG 60.373 63.158 0.00 0.00 46.91 5.12
1772 3371 1.373497 GCATAGATGAGGCCGTCGG 60.373 63.158 6.99 6.99 33.59 4.79
1789 3388 4.240883 GTCGGCAACTACGTTAATTCTG 57.759 45.455 0.00 0.00 0.00 3.02
1790 3389 3.061697 GTCGGCAACTACGTTAATTCTGG 59.938 47.826 0.00 0.00 0.00 3.86
1791 3390 2.997986 CGGCAACTACGTTAATTCTGGT 59.002 45.455 0.00 0.00 0.00 4.00
1792 3391 4.082300 TCGGCAACTACGTTAATTCTGGTA 60.082 41.667 0.00 0.00 0.00 3.25
1793 3392 4.266976 CGGCAACTACGTTAATTCTGGTAG 59.733 45.833 0.00 7.70 38.59 3.18
1794 3393 5.173664 GGCAACTACGTTAATTCTGGTAGT 58.826 41.667 0.00 8.67 45.39 2.73
1795 3394 5.063060 GGCAACTACGTTAATTCTGGTAGTG 59.937 44.000 13.08 9.82 43.36 2.74
1951 3550 2.398588 CTAGTCAAGGATGTGCCCCTA 58.601 52.381 0.00 0.00 37.37 3.53
1984 3583 1.820906 CGACCTACGTCCCGATCCA 60.821 63.158 0.00 0.00 35.40 3.41
2006 3605 0.241481 GGACGAAGAGCACGAAGAGT 59.759 55.000 0.00 0.00 34.70 3.24
2007 3606 1.467734 GGACGAAGAGCACGAAGAGTA 59.532 52.381 0.00 0.00 34.70 2.59
2008 3607 2.507866 GACGAAGAGCACGAAGAGTAC 58.492 52.381 0.00 0.00 34.70 2.73
2157 3767 0.900421 GCTAACAGGAACGTACCCCT 59.100 55.000 3.55 1.21 0.00 4.79
2162 3772 2.667348 AGGAACGTACCCCTGACTG 58.333 57.895 3.61 0.00 0.00 3.51
2164 3774 1.192428 GGAACGTACCCCTGACTGAT 58.808 55.000 0.00 0.00 0.00 2.90
2246 5312 4.667858 ACCTATCCTGACTATCTCACTCCT 59.332 45.833 0.00 0.00 0.00 3.69
2247 5313 5.852807 ACCTATCCTGACTATCTCACTCCTA 59.147 44.000 0.00 0.00 0.00 2.94
2248 5314 6.333168 ACCTATCCTGACTATCTCACTCCTAA 59.667 42.308 0.00 0.00 0.00 2.69
2249 5315 7.019153 ACCTATCCTGACTATCTCACTCCTAAT 59.981 40.741 0.00 0.00 0.00 1.73
2250 5316 8.553153 CCTATCCTGACTATCTCACTCCTAATA 58.447 40.741 0.00 0.00 0.00 0.98
2841 7454 8.678199 AGCATTAAATGAAAGCTAGTTTCCTAC 58.322 33.333 12.35 0.00 43.63 3.18
2846 7459 5.064441 TGAAAGCTAGTTTCCTACGTACC 57.936 43.478 12.35 0.00 43.63 3.34
2847 7460 4.082026 TGAAAGCTAGTTTCCTACGTACCC 60.082 45.833 12.35 0.00 43.63 3.69
2848 7461 2.382882 AGCTAGTTTCCTACGTACCCC 58.617 52.381 0.00 0.00 0.00 4.95
2849 7462 1.410517 GCTAGTTTCCTACGTACCCCC 59.589 57.143 0.00 0.00 0.00 5.40
2850 7463 2.952244 GCTAGTTTCCTACGTACCCCCT 60.952 54.545 0.00 0.00 0.00 4.79
2851 7464 1.857965 AGTTTCCTACGTACCCCCTC 58.142 55.000 0.00 0.00 0.00 4.30
2853 7466 1.753649 GTTTCCTACGTACCCCCTCTC 59.246 57.143 0.00 0.00 0.00 3.20
2854 7467 1.302907 TTCCTACGTACCCCCTCTCT 58.697 55.000 0.00 0.00 0.00 3.10
2855 7468 0.842635 TCCTACGTACCCCCTCTCTC 59.157 60.000 0.00 0.00 0.00 3.20
2856 7469 0.845337 CCTACGTACCCCCTCTCTCT 59.155 60.000 0.00 0.00 0.00 3.10
2857 7470 1.202794 CCTACGTACCCCCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
2858 7471 1.489649 CTACGTACCCCCTCTCTCTCA 59.510 57.143 0.00 0.00 0.00 3.27
2859 7472 0.256464 ACGTACCCCCTCTCTCTCAG 59.744 60.000 0.00 0.00 0.00 3.35
2860 7473 0.256464 CGTACCCCCTCTCTCTCAGT 59.744 60.000 0.00 0.00 0.00 3.41
2862 7475 2.822697 GTACCCCCTCTCTCTCAGTTT 58.177 52.381 0.00 0.00 0.00 2.66
2863 7476 3.624205 CGTACCCCCTCTCTCTCAGTTTA 60.624 52.174 0.00 0.00 0.00 2.01
2865 7478 2.111972 ACCCCCTCTCTCTCAGTTTACA 59.888 50.000 0.00 0.00 0.00 2.41
2866 7479 2.763448 CCCCCTCTCTCTCAGTTTACAG 59.237 54.545 0.00 0.00 0.00 2.74
2867 7480 3.564571 CCCCCTCTCTCTCAGTTTACAGA 60.565 52.174 0.00 0.00 0.00 3.41
2869 7482 3.130340 CCCTCTCTCTCAGTTTACAGAGC 59.870 52.174 0.00 0.00 36.79 4.09
2870 7483 3.181501 CCTCTCTCTCAGTTTACAGAGCG 60.182 52.174 0.00 0.00 36.79 5.03
2871 7484 3.413327 TCTCTCTCAGTTTACAGAGCGT 58.587 45.455 0.00 0.00 36.79 5.07
2872 7485 4.576879 TCTCTCTCAGTTTACAGAGCGTA 58.423 43.478 0.00 0.00 36.79 4.42
2873 7486 4.392445 TCTCTCTCAGTTTACAGAGCGTAC 59.608 45.833 0.00 0.00 36.79 3.67
2874 7487 3.124806 TCTCTCAGTTTACAGAGCGTACG 59.875 47.826 11.84 11.84 36.79 3.67
2875 7488 1.912110 CTCAGTTTACAGAGCGTACGC 59.088 52.381 32.17 32.17 42.33 4.42
2885 7498 2.329339 GCGTACGCGTACCCCTAG 59.671 66.667 36.14 25.08 40.81 3.02
2886 7499 3.025619 CGTACGCGTACCCCTAGG 58.974 66.667 36.14 21.23 40.04 3.02
2888 7501 1.776034 CGTACGCGTACCCCTAGGTC 61.776 65.000 36.14 14.48 46.45 3.85
2889 7502 1.523711 TACGCGTACCCCTAGGTCG 60.524 63.158 16.41 8.12 46.45 4.79
2890 7503 2.252072 TACGCGTACCCCTAGGTCGT 62.252 60.000 16.41 6.00 46.45 4.34
2891 7504 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
2892 7505 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
2893 7506 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
2894 7507 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
2895 7508 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
2896 7509 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
2897 7510 3.736126 CGTACCCCTAGGTCGTCAATTTC 60.736 52.174 8.29 0.00 46.45 2.17
2898 7511 2.262637 ACCCCTAGGTCGTCAATTTCA 58.737 47.619 8.29 0.00 46.45 2.69
2899 7512 2.236395 ACCCCTAGGTCGTCAATTTCAG 59.764 50.000 8.29 0.00 46.45 3.02
2900 7513 2.280628 CCCTAGGTCGTCAATTTCAGC 58.719 52.381 8.29 0.00 0.00 4.26
2901 7514 2.354704 CCCTAGGTCGTCAATTTCAGCA 60.355 50.000 8.29 0.00 0.00 4.41
2902 7515 3.334691 CCTAGGTCGTCAATTTCAGCAA 58.665 45.455 0.00 0.00 0.00 3.91
2903 7516 3.125316 CCTAGGTCGTCAATTTCAGCAAC 59.875 47.826 0.00 0.00 0.00 4.17
2904 7517 1.880027 AGGTCGTCAATTTCAGCAACC 59.120 47.619 0.00 0.00 0.00 3.77
2905 7518 1.880027 GGTCGTCAATTTCAGCAACCT 59.120 47.619 0.00 0.00 0.00 3.50
2906 7519 3.071479 GGTCGTCAATTTCAGCAACCTA 58.929 45.455 0.00 0.00 0.00 3.08
2907 7520 3.500680 GGTCGTCAATTTCAGCAACCTAA 59.499 43.478 0.00 0.00 0.00 2.69
2908 7521 4.156008 GGTCGTCAATTTCAGCAACCTAAT 59.844 41.667 0.00 0.00 0.00 1.73
2909 7522 5.353123 GGTCGTCAATTTCAGCAACCTAATA 59.647 40.000 0.00 0.00 0.00 0.98
2910 7523 6.248631 GTCGTCAATTTCAGCAACCTAATAC 58.751 40.000 0.00 0.00 0.00 1.89
2911 7524 5.935206 TCGTCAATTTCAGCAACCTAATACA 59.065 36.000 0.00 0.00 0.00 2.29
2912 7525 6.428465 TCGTCAATTTCAGCAACCTAATACAA 59.572 34.615 0.00 0.00 0.00 2.41
2913 7526 6.742718 CGTCAATTTCAGCAACCTAATACAAG 59.257 38.462 0.00 0.00 0.00 3.16
2914 7527 7.573096 CGTCAATTTCAGCAACCTAATACAAGT 60.573 37.037 0.00 0.00 0.00 3.16
2915 7528 7.750903 GTCAATTTCAGCAACCTAATACAAGTC 59.249 37.037 0.00 0.00 0.00 3.01
2916 7529 7.446931 TCAATTTCAGCAACCTAATACAAGTCA 59.553 33.333 0.00 0.00 0.00 3.41
2917 7530 7.944729 ATTTCAGCAACCTAATACAAGTCAT 57.055 32.000 0.00 0.00 0.00 3.06
2918 7531 9.461312 AATTTCAGCAACCTAATACAAGTCATA 57.539 29.630 0.00 0.00 0.00 2.15
2919 7532 9.632638 ATTTCAGCAACCTAATACAAGTCATAT 57.367 29.630 0.00 0.00 0.00 1.78
2960 7573 9.520515 ACCAACATAAACTTCAGATGTTCTATT 57.479 29.630 2.28 0.00 40.85 1.73
2968 7581 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
2969 7582 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
2970 7583 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
2972 7585 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
3023 7636 9.515226 TTAGGATGATAAAATTGGCAGGTATAC 57.485 33.333 0.00 0.00 0.00 1.47
3025 7638 5.682943 TGATAAAATTGGCAGGTATACGC 57.317 39.130 0.00 0.00 0.00 4.42
3026 7639 4.212425 TGATAAAATTGGCAGGTATACGCG 59.788 41.667 3.53 3.53 0.00 6.01
3028 7641 2.894763 AATTGGCAGGTATACGCGTA 57.105 45.000 22.94 22.94 0.00 4.42
3030 7643 0.386476 TTGGCAGGTATACGCGTAGG 59.614 55.000 24.78 11.85 0.00 3.18
3031 7644 0.466007 TGGCAGGTATACGCGTAGGA 60.466 55.000 24.78 12.19 0.00 2.94
3032 7645 0.039708 GGCAGGTATACGCGTAGGAC 60.040 60.000 24.78 22.22 0.00 3.85
3034 7647 1.336125 GCAGGTATACGCGTAGGACTT 59.664 52.381 24.78 17.33 0.00 3.01
3035 7648 2.857489 GCAGGTATACGCGTAGGACTTG 60.857 54.545 27.71 27.71 0.00 3.16
3036 7649 2.357009 CAGGTATACGCGTAGGACTTGT 59.643 50.000 25.52 12.75 0.00 3.16
3037 7650 3.561310 CAGGTATACGCGTAGGACTTGTA 59.439 47.826 25.52 11.92 0.00 2.41
3038 7651 4.035558 CAGGTATACGCGTAGGACTTGTAA 59.964 45.833 25.52 5.91 0.00 2.41
3039 7652 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
3040 7653 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
3043 7656 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
3044 7657 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
3045 7658 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
3046 7659 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
3047 7660 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
3048 7661 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
3049 7662 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
3050 7663 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
3051 7664 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
3052 7665 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
3053 7666 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
3054 7667 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
3055 7668 4.942761 TGTAAACTGAAACGGAGGTAGT 57.057 40.909 0.00 0.00 0.00 2.73
3056 7669 6.040842 ACTTGTAAACTGAAACGGAGGTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
3057 7670 5.772521 TGTAAACTGAAACGGAGGTAGTAC 58.227 41.667 0.00 0.00 0.00 2.73
3058 7671 5.536161 TGTAAACTGAAACGGAGGTAGTACT 59.464 40.000 0.00 0.00 0.00 2.73
3059 7672 6.714810 TGTAAACTGAAACGGAGGTAGTACTA 59.285 38.462 0.00 0.00 0.00 1.82
3060 7673 5.635417 AACTGAAACGGAGGTAGTACTAC 57.365 43.478 22.53 22.53 35.40 2.73
3061 7674 4.655963 ACTGAAACGGAGGTAGTACTACA 58.344 43.478 29.38 9.12 37.78 2.74
3062 7675 5.259632 ACTGAAACGGAGGTAGTACTACAT 58.740 41.667 29.38 24.95 37.78 2.29
3063 7676 5.713861 ACTGAAACGGAGGTAGTACTACATT 59.286 40.000 29.38 19.04 37.78 2.71
3064 7677 6.886459 ACTGAAACGGAGGTAGTACTACATTA 59.114 38.462 29.38 8.02 37.78 1.90
3065 7678 7.088589 TGAAACGGAGGTAGTACTACATTAC 57.911 40.000 29.38 19.63 37.78 1.89
3066 7679 6.658816 TGAAACGGAGGTAGTACTACATTACA 59.341 38.462 29.38 16.01 37.78 2.41
3067 7680 7.340232 TGAAACGGAGGTAGTACTACATTACAT 59.660 37.037 29.38 12.71 37.78 2.29
3068 7681 6.630444 ACGGAGGTAGTACTACATTACATG 57.370 41.667 29.38 15.97 37.78 3.21
3069 7682 6.359804 ACGGAGGTAGTACTACATTACATGA 58.640 40.000 29.38 0.00 37.78 3.07
3070 7683 6.830324 ACGGAGGTAGTACTACATTACATGAA 59.170 38.462 29.38 0.00 37.78 2.57
3071 7684 7.340232 ACGGAGGTAGTACTACATTACATGAAA 59.660 37.037 29.38 0.00 37.78 2.69
3072 7685 7.861372 CGGAGGTAGTACTACATTACATGAAAG 59.139 40.741 29.38 7.13 37.78 2.62
3073 7686 7.652507 GGAGGTAGTACTACATTACATGAAAGC 59.347 40.741 29.38 10.34 37.78 3.51
3074 7687 8.307582 AGGTAGTACTACATTACATGAAAGCT 57.692 34.615 29.38 12.86 37.78 3.74
3075 7688 9.417561 AGGTAGTACTACATTACATGAAAGCTA 57.582 33.333 29.38 0.00 37.78 3.32
3076 7689 9.460906 GGTAGTACTACATTACATGAAAGCTAC 57.539 37.037 29.38 6.77 37.78 3.58
3112 7725 6.723298 TTTTGAAGATAGAAACCAAAGGCA 57.277 33.333 0.00 0.00 0.00 4.75
3113 7726 5.705609 TTGAAGATAGAAACCAAAGGCAC 57.294 39.130 0.00 0.00 0.00 5.01
3115 7728 4.761739 TGAAGATAGAAACCAAAGGCACTG 59.238 41.667 0.00 0.00 40.86 3.66
3116 7729 4.640771 AGATAGAAACCAAAGGCACTGA 57.359 40.909 0.00 0.00 40.86 3.41
3117 7730 5.184892 AGATAGAAACCAAAGGCACTGAT 57.815 39.130 0.00 0.00 40.86 2.90
3118 7731 5.574188 AGATAGAAACCAAAGGCACTGATT 58.426 37.500 0.00 0.00 40.86 2.57
3119 7732 6.721318 AGATAGAAACCAAAGGCACTGATTA 58.279 36.000 0.00 0.00 40.86 1.75
3120 7733 7.349598 AGATAGAAACCAAAGGCACTGATTAT 58.650 34.615 0.00 0.00 40.86 1.28
3121 7734 7.836183 AGATAGAAACCAAAGGCACTGATTATT 59.164 33.333 0.00 0.00 40.86 1.40
3122 7735 6.670695 AGAAACCAAAGGCACTGATTATTT 57.329 33.333 0.00 0.00 40.86 1.40
3123 7736 7.066307 AGAAACCAAAGGCACTGATTATTTT 57.934 32.000 0.00 0.00 40.86 1.82
3124 7737 7.154656 AGAAACCAAAGGCACTGATTATTTTC 58.845 34.615 0.00 0.00 40.86 2.29
3125 7738 6.670695 AACCAAAGGCACTGATTATTTTCT 57.329 33.333 0.00 0.00 40.86 2.52
3126 7739 6.029346 ACCAAAGGCACTGATTATTTTCTG 57.971 37.500 0.00 0.00 40.86 3.02
3127 7740 5.774690 ACCAAAGGCACTGATTATTTTCTGA 59.225 36.000 0.00 0.00 40.86 3.27
3128 7741 6.267471 ACCAAAGGCACTGATTATTTTCTGAA 59.733 34.615 0.00 0.00 40.86 3.02
3129 7742 6.810182 CCAAAGGCACTGATTATTTTCTGAAG 59.190 38.462 0.00 0.00 40.86 3.02
3130 7743 6.521151 AAGGCACTGATTATTTTCTGAAGG 57.479 37.500 0.00 0.00 40.86 3.46
3131 7744 5.574188 AGGCACTGATTATTTTCTGAAGGT 58.426 37.500 0.00 0.00 37.18 3.50
3132 7745 6.721318 AGGCACTGATTATTTTCTGAAGGTA 58.279 36.000 0.00 0.00 37.18 3.08
3133 7746 7.349598 AGGCACTGATTATTTTCTGAAGGTAT 58.650 34.615 0.00 0.00 37.18 2.73
3134 7747 7.836183 AGGCACTGATTATTTTCTGAAGGTATT 59.164 33.333 0.00 0.00 37.18 1.89
3135 7748 8.470002 GGCACTGATTATTTTCTGAAGGTATTT 58.530 33.333 0.00 0.00 0.00 1.40
3136 7749 9.508567 GCACTGATTATTTTCTGAAGGTATTTC 57.491 33.333 0.00 0.00 36.29 2.17
3137 7750 9.708222 CACTGATTATTTTCTGAAGGTATTTCG 57.292 33.333 0.00 0.00 38.71 3.46
3138 7751 9.667107 ACTGATTATTTTCTGAAGGTATTTCGA 57.333 29.630 0.00 0.00 38.71 3.71
3140 7753 9.667107 TGATTATTTTCTGAAGGTATTTCGAGT 57.333 29.630 0.00 0.00 38.71 4.18
3149 7762 9.496873 TCTGAAGGTATTTCGAGTTTTATTTCA 57.503 29.630 0.00 0.00 38.71 2.69
3150 7763 9.760660 CTGAAGGTATTTCGAGTTTTATTTCAG 57.239 33.333 9.51 9.51 38.71 3.02
3151 7764 8.726988 TGAAGGTATTTCGAGTTTTATTTCAGG 58.273 33.333 0.00 0.00 38.71 3.86
3152 7765 7.625828 AGGTATTTCGAGTTTTATTTCAGGG 57.374 36.000 0.00 0.00 0.00 4.45
3153 7766 6.602009 AGGTATTTCGAGTTTTATTTCAGGGG 59.398 38.462 0.00 0.00 0.00 4.79
3154 7767 6.600427 GGTATTTCGAGTTTTATTTCAGGGGA 59.400 38.462 0.00 0.00 0.00 4.81
3155 7768 6.759497 ATTTCGAGTTTTATTTCAGGGGAG 57.241 37.500 0.00 0.00 0.00 4.30
3156 7769 4.903045 TCGAGTTTTATTTCAGGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
3157 7770 6.363167 TTCGAGTTTTATTTCAGGGGAGTA 57.637 37.500 0.00 0.00 0.00 2.59
3158 7771 5.727434 TCGAGTTTTATTTCAGGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
3159 7772 5.482878 TCGAGTTTTATTTCAGGGGAGTACT 59.517 40.000 0.00 0.00 0.00 2.73
3160 7773 6.664816 TCGAGTTTTATTTCAGGGGAGTACTA 59.335 38.462 0.00 0.00 0.00 1.82
3161 7774 7.178983 TCGAGTTTTATTTCAGGGGAGTACTAA 59.821 37.037 0.00 0.00 0.00 2.24
3162 7775 7.985752 CGAGTTTTATTTCAGGGGAGTACTAAT 59.014 37.037 0.00 0.00 0.00 1.73
3163 7776 9.327628 GAGTTTTATTTCAGGGGAGTACTAATC 57.672 37.037 0.00 0.00 0.00 1.75
3224 7837 4.177026 CAGTAGGTGTGTATCTCTTGTGC 58.823 47.826 0.00 0.00 0.00 4.57
3237 7850 1.264020 TCTTGTGCATTTGTCAGTCGC 59.736 47.619 0.00 0.00 0.00 5.19
3253 7866 2.128035 GTCGCCATACAGAATCTTCGG 58.872 52.381 0.00 0.00 0.00 4.30
3284 7897 7.709601 ACCTAATACTCCCTCCATTTCTTTTT 58.290 34.615 0.00 0.00 0.00 1.94
3393 8006 9.461312 ACTAAAGTTATATGGCATGAAAGTTCA 57.539 29.630 10.98 0.00 42.14 3.18
3540 8154 2.283529 ACGCCAGTGGGAGTCGATT 61.284 57.895 12.15 0.00 44.69 3.34
3542 8156 1.296715 GCCAGTGGGAGTCGATTGT 59.703 57.895 12.15 0.00 35.59 2.71
3596 8210 4.971924 ACAGAGGAATAGGCTCCAGTTAAT 59.028 41.667 0.00 0.00 38.02 1.40
3674 8288 2.904866 AATGTGCCCGTGCGTTGT 60.905 55.556 0.00 0.00 41.78 3.32
3679 8293 1.598407 TGCCCGTGCGTTGTAACAT 60.598 52.632 0.00 0.00 41.78 2.71
3803 8418 3.325293 TCTCAGGCTGTTTGATGAGAC 57.675 47.619 15.27 0.00 42.36 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 278 6.432107 TCTATTCTTTGGTTTTCGTTTTCCG 58.568 36.000 0.00 0.00 38.13 4.30
516 532 2.829592 GCTACAGGCGCCCCTTAT 59.170 61.111 26.15 6.79 40.33 1.73
530 546 2.805671 CGGTGAATCATATTTGGCGCTA 59.194 45.455 7.64 0.00 0.00 4.26
542 558 0.174845 GTGATCGTCCCGGTGAATCA 59.825 55.000 0.00 1.15 0.00 2.57
1228 2826 6.974048 ACAACCGTTGGATTTGTTTACTTTAC 59.026 34.615 15.60 0.00 28.92 2.01
1414 3013 1.230324 GACGGGAATCAAGGCTATGC 58.770 55.000 0.00 0.00 0.00 3.14
1415 3014 2.487934 CTGACGGGAATCAAGGCTATG 58.512 52.381 0.00 0.00 0.00 2.23
1416 3015 1.417890 CCTGACGGGAATCAAGGCTAT 59.582 52.381 0.00 0.00 37.23 2.97
1417 3016 0.830648 CCTGACGGGAATCAAGGCTA 59.169 55.000 0.00 0.00 37.23 3.93
1418 3017 0.909610 TCCTGACGGGAATCAAGGCT 60.910 55.000 0.00 0.00 41.91 4.58
1419 3018 1.602237 TCCTGACGGGAATCAAGGC 59.398 57.895 0.00 0.00 41.91 4.35
1429 3028 1.443407 CATAGGCCTGTCCTGACGG 59.557 63.158 17.99 0.00 46.98 4.79
1430 3029 1.227380 GCATAGGCCTGTCCTGACG 60.227 63.158 17.99 0.00 46.98 4.35
1431 3030 4.865865 GCATAGGCCTGTCCTGAC 57.134 61.111 17.99 0.96 46.98 3.51
1455 3054 0.753262 AGAAGCTATGCCTACGGTGG 59.247 55.000 0.00 0.00 0.00 4.61
1456 3055 1.137086 ACAGAAGCTATGCCTACGGTG 59.863 52.381 0.00 0.00 0.00 4.94
1457 3056 1.409427 GACAGAAGCTATGCCTACGGT 59.591 52.381 0.00 0.00 0.00 4.83
1458 3057 1.683917 AGACAGAAGCTATGCCTACGG 59.316 52.381 0.00 0.00 0.00 4.02
1459 3058 3.444703 AAGACAGAAGCTATGCCTACG 57.555 47.619 0.00 0.00 0.00 3.51
1460 3059 7.793927 AAAATAAGACAGAAGCTATGCCTAC 57.206 36.000 0.00 0.00 0.00 3.18
1493 3092 6.019156 GTCGGCATTGAAATCAAACAGAAAAA 60.019 34.615 0.00 0.00 39.55 1.94
1494 3093 5.461737 GTCGGCATTGAAATCAAACAGAAAA 59.538 36.000 0.00 0.00 39.55 2.29
1495 3094 4.981674 GTCGGCATTGAAATCAAACAGAAA 59.018 37.500 0.00 0.00 39.55 2.52
1496 3095 4.545610 GTCGGCATTGAAATCAAACAGAA 58.454 39.130 0.00 0.00 39.55 3.02
1497 3096 3.364864 CGTCGGCATTGAAATCAAACAGA 60.365 43.478 0.00 0.02 39.55 3.41
1498 3097 2.910482 CGTCGGCATTGAAATCAAACAG 59.090 45.455 0.00 0.00 39.55 3.16
1499 3098 2.351253 CCGTCGGCATTGAAATCAAACA 60.351 45.455 0.00 0.00 39.55 2.83
1500 3099 2.250188 CCGTCGGCATTGAAATCAAAC 58.750 47.619 0.00 0.00 39.55 2.93
1501 3100 2.627863 CCGTCGGCATTGAAATCAAA 57.372 45.000 0.00 0.00 39.55 2.69
1525 3124 3.335306 TACGCCGACGGGGTTAACG 62.335 63.158 37.01 22.35 46.84 3.18
1526 3125 1.517039 CTACGCCGACGGGGTTAAC 60.517 63.158 37.01 9.33 46.84 2.01
1527 3126 1.531739 AACTACGCCGACGGGGTTAA 61.532 55.000 37.01 21.73 46.84 2.01
1528 3127 1.933115 GAACTACGCCGACGGGGTTA 61.933 60.000 37.01 22.39 46.84 2.85
1529 3128 3.286915 GAACTACGCCGACGGGGTT 62.287 63.158 37.01 22.39 46.84 4.11
1531 3130 4.503314 GGAACTACGCCGACGGGG 62.503 72.222 27.56 27.56 46.04 5.73
1564 3163 3.066190 CTACCCGGTCAGCGGTGA 61.066 66.667 15.53 14.39 33.36 4.02
1565 3164 4.143333 CCTACCCGGTCAGCGGTG 62.143 72.222 15.53 8.67 33.36 4.94
1613 3212 1.666580 GGGACCTCTGGCTATACGC 59.333 63.158 0.00 0.00 38.13 4.42
1614 3213 0.536687 TCGGGACCTCTGGCTATACG 60.537 60.000 0.00 0.00 0.00 3.06
1615 3214 0.960286 GTCGGGACCTCTGGCTATAC 59.040 60.000 0.00 0.00 0.00 1.47
1616 3215 0.536687 CGTCGGGACCTCTGGCTATA 60.537 60.000 0.00 0.00 0.00 1.31
1617 3216 1.828660 CGTCGGGACCTCTGGCTAT 60.829 63.158 0.00 0.00 0.00 2.97
1618 3217 2.439701 CGTCGGGACCTCTGGCTA 60.440 66.667 0.00 0.00 0.00 3.93
1623 3222 3.369410 TATGGCCGTCGGGACCTCT 62.369 63.158 14.38 1.62 42.67 3.69
1624 3223 2.836360 TATGGCCGTCGGGACCTC 60.836 66.667 14.38 0.00 42.67 3.85
1625 3224 2.288642 TACTATGGCCGTCGGGACCT 62.289 60.000 14.38 0.00 42.67 3.85
1626 3225 1.183676 ATACTATGGCCGTCGGGACC 61.184 60.000 14.38 7.22 42.67 4.46
1627 3226 0.038526 CATACTATGGCCGTCGGGAC 60.039 60.000 14.38 0.00 44.16 4.46
1628 3227 1.812686 GCATACTATGGCCGTCGGGA 61.813 60.000 14.38 0.00 34.06 5.14
1629 3228 1.374252 GCATACTATGGCCGTCGGG 60.374 63.158 14.38 0.00 0.00 5.14
1630 3229 4.261888 GCATACTATGGCCGTCGG 57.738 61.111 6.99 6.99 0.00 4.79
1637 3236 1.292223 CCCCGTCGGCATACTATGG 59.708 63.158 5.50 0.00 0.00 2.74
1638 3237 1.292223 CCCCCGTCGGCATACTATG 59.708 63.158 5.50 0.00 0.00 2.23
1639 3238 3.787394 CCCCCGTCGGCATACTAT 58.213 61.111 5.50 0.00 0.00 2.12
1657 3256 4.535425 GTCGATCTATGCCGACGG 57.465 61.111 10.29 10.29 44.23 4.79
1660 3259 3.150848 GCATATGTCGATCTATGCCGA 57.849 47.619 22.15 0.00 42.76 5.54
1663 3262 3.545475 CGTCAGCATATGTCGATCTATGC 59.455 47.826 23.93 23.93 46.80 3.14
1664 3263 4.101235 CCGTCAGCATATGTCGATCTATG 58.899 47.826 4.29 11.03 42.10 2.23
1665 3264 3.428180 GCCGTCAGCATATGTCGATCTAT 60.428 47.826 4.29 0.00 42.10 1.98
1666 3265 2.095212 GCCGTCAGCATATGTCGATCTA 60.095 50.000 4.29 0.00 42.10 1.98
1667 3266 1.336332 GCCGTCAGCATATGTCGATCT 60.336 52.381 4.29 0.00 42.10 2.75
1668 3267 1.063806 GCCGTCAGCATATGTCGATC 58.936 55.000 4.29 0.00 42.10 3.69
1669 3268 3.201342 GCCGTCAGCATATGTCGAT 57.799 52.632 4.29 0.00 42.10 3.59
1670 3269 4.730081 GCCGTCAGCATATGTCGA 57.270 55.556 4.29 0.00 42.10 4.20
1679 3278 1.420312 GCGTAGAAAAGCCGTCAGC 59.580 57.895 0.00 0.00 44.25 4.26
1680 3279 2.079049 GGCGTAGAAAAGCCGTCAG 58.921 57.895 0.00 0.00 44.22 3.51
1681 3280 4.272100 GGCGTAGAAAAGCCGTCA 57.728 55.556 0.00 0.00 44.22 4.35
1686 3285 1.007580 GGCTGTAGGCGTAGAAAAGC 58.992 55.000 0.00 0.00 42.94 3.51
1687 3286 2.094182 TCAGGCTGTAGGCGTAGAAAAG 60.094 50.000 15.27 0.00 46.23 2.27
1688 3287 1.897133 TCAGGCTGTAGGCGTAGAAAA 59.103 47.619 15.27 0.00 46.23 2.29
1689 3288 1.203994 GTCAGGCTGTAGGCGTAGAAA 59.796 52.381 15.27 0.00 46.23 2.52
1690 3289 0.815734 GTCAGGCTGTAGGCGTAGAA 59.184 55.000 15.27 0.00 46.23 2.10
1691 3290 1.035932 GGTCAGGCTGTAGGCGTAGA 61.036 60.000 15.27 0.00 46.23 2.59
1692 3291 1.038130 AGGTCAGGCTGTAGGCGTAG 61.038 60.000 15.27 0.00 46.23 3.51
1693 3292 1.000019 AGGTCAGGCTGTAGGCGTA 60.000 57.895 15.27 0.00 46.23 4.42
1694 3293 2.283966 AGGTCAGGCTGTAGGCGT 60.284 61.111 15.27 2.84 46.23 5.68
1695 3294 2.185350 CAGGTCAGGCTGTAGGCG 59.815 66.667 15.27 0.00 46.23 5.52
1696 3295 2.586792 CCAGGTCAGGCTGTAGGC 59.413 66.667 15.27 3.70 41.43 3.93
1697 3296 3.313874 CCCAGGTCAGGCTGTAGG 58.686 66.667 15.27 11.63 0.00 3.18
1708 3307 3.768833 ATATCCCGACGGCCCAGGT 62.769 63.158 8.86 0.00 0.00 4.00
1709 3308 2.923035 ATATCCCGACGGCCCAGG 60.923 66.667 8.86 0.00 0.00 4.45
1710 3309 2.343758 CATATCCCGACGGCCCAG 59.656 66.667 8.86 0.00 0.00 4.45
1711 3310 2.445085 ACATATCCCGACGGCCCA 60.445 61.111 8.86 0.00 0.00 5.36
1712 3311 2.342648 GACATATCCCGACGGCCC 59.657 66.667 8.86 0.00 0.00 5.80
1713 3312 1.827399 ATGGACATATCCCGACGGCC 61.827 60.000 8.86 2.64 45.59 6.13
1714 3313 0.389948 GATGGACATATCCCGACGGC 60.390 60.000 8.86 0.00 45.59 5.68
1715 3314 1.257743 AGATGGACATATCCCGACGG 58.742 55.000 6.99 6.99 45.59 4.79
1716 3315 3.735208 GCATAGATGGACATATCCCGACG 60.735 52.174 0.00 0.00 45.59 5.12
1717 3316 3.430929 GGCATAGATGGACATATCCCGAC 60.431 52.174 0.00 0.00 45.59 4.79
1718 3317 2.766263 GGCATAGATGGACATATCCCGA 59.234 50.000 0.00 0.00 45.59 5.14
1719 3318 2.481969 CGGCATAGATGGACATATCCCG 60.482 54.545 0.00 0.00 45.59 5.14
1720 3319 2.766263 TCGGCATAGATGGACATATCCC 59.234 50.000 0.00 0.00 45.59 3.85
1721 3320 3.735208 CGTCGGCATAGATGGACATATCC 60.735 52.174 0.00 0.00 46.48 2.59
1722 3321 3.439293 CGTCGGCATAGATGGACATATC 58.561 50.000 0.00 0.00 0.00 1.63
1723 3322 3.510388 CGTCGGCATAGATGGACATAT 57.490 47.619 0.00 0.00 0.00 1.78
1725 3324 3.894257 CGTCGGCATAGATGGACAT 57.106 52.632 0.00 0.00 0.00 3.06
1745 3344 0.898320 CTCATCTATGCCTACGGGGG 59.102 60.000 0.00 0.00 35.12 5.40
1746 3345 0.898320 CCTCATCTATGCCTACGGGG 59.102 60.000 0.00 0.00 38.36 5.73
1747 3346 0.247736 GCCTCATCTATGCCTACGGG 59.752 60.000 0.00 0.00 0.00 5.28
1748 3347 0.247736 GGCCTCATCTATGCCTACGG 59.752 60.000 0.00 0.00 42.01 4.02
1749 3348 0.109086 CGGCCTCATCTATGCCTACG 60.109 60.000 0.00 0.00 43.12 3.51
1750 3349 0.969894 ACGGCCTCATCTATGCCTAC 59.030 55.000 0.00 0.00 43.12 3.18
1751 3350 1.257743 GACGGCCTCATCTATGCCTA 58.742 55.000 0.00 0.00 43.12 3.93
1752 3351 1.810606 CGACGGCCTCATCTATGCCT 61.811 60.000 0.00 0.00 43.12 4.75
1753 3352 1.373497 CGACGGCCTCATCTATGCC 60.373 63.158 0.00 0.00 41.85 4.40
1754 3353 1.373497 CCGACGGCCTCATCTATGC 60.373 63.158 0.00 0.00 0.00 3.14
1755 3354 1.373497 GCCGACGGCCTCATCTATG 60.373 63.158 28.74 0.00 44.06 2.23
1756 3355 3.052081 GCCGACGGCCTCATCTAT 58.948 61.111 28.74 0.00 44.06 1.98
1776 3375 6.040247 TGCATCACTACCAGAATTAACGTAG 58.960 40.000 0.00 0.00 35.40 3.51
1777 3376 5.968254 TGCATCACTACCAGAATTAACGTA 58.032 37.500 0.00 0.00 0.00 3.57
1778 3377 4.827692 TGCATCACTACCAGAATTAACGT 58.172 39.130 0.00 0.00 0.00 3.99
1779 3378 5.294306 ACATGCATCACTACCAGAATTAACG 59.706 40.000 0.00 0.00 0.00 3.18
1780 3379 6.683974 ACATGCATCACTACCAGAATTAAC 57.316 37.500 0.00 0.00 0.00 2.01
1781 3380 6.404623 GCAACATGCATCACTACCAGAATTAA 60.405 38.462 0.00 0.00 44.26 1.40
1782 3381 5.066375 GCAACATGCATCACTACCAGAATTA 59.934 40.000 0.00 0.00 44.26 1.40
1783 3382 4.142315 GCAACATGCATCACTACCAGAATT 60.142 41.667 0.00 0.00 44.26 2.17
1784 3383 3.379372 GCAACATGCATCACTACCAGAAT 59.621 43.478 0.00 0.00 44.26 2.40
1785 3384 2.749076 GCAACATGCATCACTACCAGAA 59.251 45.455 0.00 0.00 44.26 3.02
1786 3385 2.358957 GCAACATGCATCACTACCAGA 58.641 47.619 0.00 0.00 44.26 3.86
1787 3386 2.838386 GCAACATGCATCACTACCAG 57.162 50.000 0.00 0.00 44.26 4.00
1935 3534 0.911769 CAGTAGGGGCACATCCTTGA 59.088 55.000 0.00 0.00 35.92 3.02
1984 3583 0.108615 CTTCGTGCTCTTCGTCCCAT 60.109 55.000 0.00 0.00 0.00 4.00
2006 3605 0.036105 TCGTCCCACGAGCAGTAGTA 60.036 55.000 0.00 0.00 46.73 1.82
2007 3606 1.303074 TCGTCCCACGAGCAGTAGT 60.303 57.895 0.00 0.00 46.73 2.73
2008 3607 3.587095 TCGTCCCACGAGCAGTAG 58.413 61.111 0.00 0.00 46.73 2.57
2157 3767 3.275999 CATGCATGTCAGGAATCAGTCA 58.724 45.455 18.91 0.00 0.00 3.41
2162 3772 0.309922 CGGCATGCATGTCAGGAATC 59.690 55.000 29.36 9.82 31.41 2.52
2164 3774 2.409055 GCGGCATGCATGTCAGGAA 61.409 57.895 29.36 0.00 45.45 3.36
2208 5267 9.868277 GTCAGGATAGGTAGATTTATTGATCTG 57.132 37.037 0.00 0.00 37.01 2.90
2241 5307 5.249393 CCCTGCAGGTGATTATATTAGGAGT 59.751 44.000 30.63 0.00 0.00 3.85
2540 7111 2.288948 GGCAATGCATCACTCCAAAACA 60.289 45.455 7.79 0.00 0.00 2.83
2841 7454 0.256464 ACTGAGAGAGAGGGGGTACG 59.744 60.000 0.00 0.00 0.00 3.67
2846 7459 3.699038 CTCTGTAAACTGAGAGAGAGGGG 59.301 52.174 10.53 0.00 42.37 4.79
2847 7460 3.130340 GCTCTGTAAACTGAGAGAGAGGG 59.870 52.174 18.00 0.00 42.37 4.30
2848 7461 3.181501 CGCTCTGTAAACTGAGAGAGAGG 60.182 52.174 18.00 0.00 41.63 3.69
2849 7462 3.438781 ACGCTCTGTAAACTGAGAGAGAG 59.561 47.826 21.36 10.90 41.63 3.20
2850 7463 3.413327 ACGCTCTGTAAACTGAGAGAGA 58.587 45.455 21.36 0.00 41.63 3.10
2851 7464 3.840890 ACGCTCTGTAAACTGAGAGAG 57.159 47.619 21.36 11.73 41.63 3.20
2853 7466 3.418094 CGTACGCTCTGTAAACTGAGAG 58.582 50.000 18.00 16.75 42.37 3.20
2854 7467 2.413765 GCGTACGCTCTGTAAACTGAGA 60.414 50.000 31.95 0.00 42.37 3.27
2855 7468 1.912110 GCGTACGCTCTGTAAACTGAG 59.088 52.381 31.95 11.45 42.56 3.35
2856 7469 1.726892 CGCGTACGCTCTGTAAACTGA 60.727 52.381 34.69 0.00 39.32 3.41
2857 7470 0.633733 CGCGTACGCTCTGTAAACTG 59.366 55.000 34.69 13.73 39.32 3.16
2858 7471 0.239347 ACGCGTACGCTCTGTAAACT 59.761 50.000 34.69 3.47 45.53 2.66
2859 7472 1.574919 GTACGCGTACGCTCTGTAAAC 59.425 52.381 34.69 18.34 45.53 2.01
2860 7473 1.465689 GGTACGCGTACGCTCTGTAAA 60.466 52.381 35.36 11.32 45.53 2.01
2862 7475 1.705337 GGGTACGCGTACGCTCTGTA 61.705 60.000 41.85 25.98 45.53 2.74
2863 7476 2.482374 GGTACGCGTACGCTCTGT 59.518 61.111 35.36 26.98 45.53 3.41
2865 7478 3.512516 GGGGTACGCGTACGCTCT 61.513 66.667 44.34 22.69 45.05 4.09
2879 7492 2.906354 CTGAAATTGACGACCTAGGGG 58.094 52.381 14.81 7.16 38.88 4.79
2880 7493 2.280628 GCTGAAATTGACGACCTAGGG 58.719 52.381 14.81 0.00 0.00 3.53
2881 7494 2.972625 TGCTGAAATTGACGACCTAGG 58.027 47.619 7.41 7.41 0.00 3.02
2882 7495 3.125316 GGTTGCTGAAATTGACGACCTAG 59.875 47.826 0.00 0.00 34.30 3.02
2883 7496 3.071479 GGTTGCTGAAATTGACGACCTA 58.929 45.455 0.00 0.00 34.30 3.08
2884 7497 1.880027 GGTTGCTGAAATTGACGACCT 59.120 47.619 0.00 0.00 34.30 3.85
2885 7498 1.880027 AGGTTGCTGAAATTGACGACC 59.120 47.619 0.00 0.00 36.91 4.79
2886 7499 4.742438 TTAGGTTGCTGAAATTGACGAC 57.258 40.909 0.00 0.00 0.00 4.34
2887 7500 5.935206 TGTATTAGGTTGCTGAAATTGACGA 59.065 36.000 0.00 0.00 0.00 4.20
2888 7501 6.176975 TGTATTAGGTTGCTGAAATTGACG 57.823 37.500 0.00 0.00 0.00 4.35
2889 7502 7.593825 ACTTGTATTAGGTTGCTGAAATTGAC 58.406 34.615 0.00 0.00 0.00 3.18
2890 7503 7.446931 TGACTTGTATTAGGTTGCTGAAATTGA 59.553 33.333 0.00 0.00 0.00 2.57
2891 7504 7.592938 TGACTTGTATTAGGTTGCTGAAATTG 58.407 34.615 0.00 0.00 0.00 2.32
2892 7505 7.759489 TGACTTGTATTAGGTTGCTGAAATT 57.241 32.000 0.00 0.00 0.00 1.82
2893 7506 7.944729 ATGACTTGTATTAGGTTGCTGAAAT 57.055 32.000 0.00 0.00 0.00 2.17
2934 7547 9.520515 AATAGAACATCTGAAGTTTATGTTGGT 57.479 29.630 13.65 6.63 42.35 3.67
2942 7555 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
2943 7556 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
2944 7557 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
2945 7558 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
2946 7559 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
2947 7560 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
2997 7610 9.515226 GTATACCTGCCAATTTTATCATCCTAA 57.485 33.333 0.00 0.00 0.00 2.69
3000 7613 6.622896 GCGTATACCTGCCAATTTTATCATCC 60.623 42.308 0.00 0.00 0.00 3.51
3002 7615 5.106712 CGCGTATACCTGCCAATTTTATCAT 60.107 40.000 0.00 0.00 0.00 2.45
3003 7616 4.212425 CGCGTATACCTGCCAATTTTATCA 59.788 41.667 0.00 0.00 0.00 2.15
3004 7617 4.212636 ACGCGTATACCTGCCAATTTTATC 59.787 41.667 11.67 0.00 0.00 1.75
3005 7618 4.131596 ACGCGTATACCTGCCAATTTTAT 58.868 39.130 11.67 0.00 0.00 1.40
3008 7621 2.032680 ACGCGTATACCTGCCAATTT 57.967 45.000 11.67 0.00 0.00 1.82
3009 7622 2.547218 CCTACGCGTATACCTGCCAATT 60.547 50.000 20.91 0.00 0.00 2.32
3010 7623 1.000506 CCTACGCGTATACCTGCCAAT 59.999 52.381 20.91 0.00 0.00 3.16
3011 7624 0.386476 CCTACGCGTATACCTGCCAA 59.614 55.000 20.91 0.00 0.00 4.52
3012 7625 0.466007 TCCTACGCGTATACCTGCCA 60.466 55.000 20.91 0.00 0.00 4.92
3013 7626 0.039708 GTCCTACGCGTATACCTGCC 60.040 60.000 20.91 0.23 0.00 4.85
3014 7627 0.950116 AGTCCTACGCGTATACCTGC 59.050 55.000 20.91 7.28 0.00 4.85
3016 7629 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
3017 7630 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
3018 7631 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
3019 7632 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
3022 7635 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
3023 7636 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
3025 7638 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
3026 7639 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
3028 7641 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
3030 7643 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
3031 7644 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
3032 7645 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
3034 7647 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
3035 7648 6.018589 AGTACTACCTCCGTTTCAGTTTAC 57.981 41.667 0.00 0.00 0.00 2.01
3036 7649 6.714810 TGTAGTACTACCTCCGTTTCAGTTTA 59.285 38.462 26.41 3.00 35.26 2.01
3037 7650 5.536161 TGTAGTACTACCTCCGTTTCAGTTT 59.464 40.000 26.41 0.00 35.26 2.66
3038 7651 5.072741 TGTAGTACTACCTCCGTTTCAGTT 58.927 41.667 26.41 0.00 35.26 3.16
3039 7652 4.655963 TGTAGTACTACCTCCGTTTCAGT 58.344 43.478 26.41 0.00 35.26 3.41
3040 7653 5.831702 ATGTAGTACTACCTCCGTTTCAG 57.168 43.478 26.41 0.00 35.26 3.02
3043 7656 7.340232 TCATGTAATGTAGTACTACCTCCGTTT 59.660 37.037 26.41 14.01 46.80 3.60
3044 7657 6.830324 TCATGTAATGTAGTACTACCTCCGTT 59.170 38.462 26.41 16.19 46.80 4.44
3045 7658 6.359804 TCATGTAATGTAGTACTACCTCCGT 58.640 40.000 26.41 12.44 46.80 4.69
3046 7659 6.872628 TCATGTAATGTAGTACTACCTCCG 57.127 41.667 26.41 11.15 46.80 4.63
3047 7660 7.652507 GCTTTCATGTAATGTAGTACTACCTCC 59.347 40.741 26.41 14.02 46.80 4.30
3048 7661 8.414778 AGCTTTCATGTAATGTAGTACTACCTC 58.585 37.037 26.41 15.44 46.80 3.85
3049 7662 8.307582 AGCTTTCATGTAATGTAGTACTACCT 57.692 34.615 26.41 16.42 46.80 3.08
3050 7663 9.460906 GTAGCTTTCATGTAATGTAGTACTACC 57.539 37.037 26.41 13.72 46.80 3.18
3088 7701 6.983890 GTGCCTTTGGTTTCTATCTTCAAAAA 59.016 34.615 0.00 0.00 0.00 1.94
3089 7702 6.323739 AGTGCCTTTGGTTTCTATCTTCAAAA 59.676 34.615 0.00 0.00 0.00 2.44
3090 7703 5.833131 AGTGCCTTTGGTTTCTATCTTCAAA 59.167 36.000 0.00 0.00 0.00 2.69
3091 7704 5.241506 CAGTGCCTTTGGTTTCTATCTTCAA 59.758 40.000 0.00 0.00 0.00 2.69
3092 7705 4.761739 CAGTGCCTTTGGTTTCTATCTTCA 59.238 41.667 0.00 0.00 0.00 3.02
3093 7706 5.003804 TCAGTGCCTTTGGTTTCTATCTTC 58.996 41.667 0.00 0.00 0.00 2.87
3094 7707 4.985538 TCAGTGCCTTTGGTTTCTATCTT 58.014 39.130 0.00 0.00 0.00 2.40
3095 7708 4.640771 TCAGTGCCTTTGGTTTCTATCT 57.359 40.909 0.00 0.00 0.00 1.98
3096 7709 5.904362 AATCAGTGCCTTTGGTTTCTATC 57.096 39.130 0.00 0.00 0.00 2.08
3097 7710 7.961326 AATAATCAGTGCCTTTGGTTTCTAT 57.039 32.000 0.00 0.00 0.00 1.98
3098 7711 7.775053 AAATAATCAGTGCCTTTGGTTTCTA 57.225 32.000 0.00 0.00 0.00 2.10
3099 7712 6.670695 AAATAATCAGTGCCTTTGGTTTCT 57.329 33.333 0.00 0.00 0.00 2.52
3100 7713 7.116805 CAGAAAATAATCAGTGCCTTTGGTTTC 59.883 37.037 0.00 0.00 0.00 2.78
3101 7714 6.930722 CAGAAAATAATCAGTGCCTTTGGTTT 59.069 34.615 0.00 0.00 0.00 3.27
3102 7715 6.267471 TCAGAAAATAATCAGTGCCTTTGGTT 59.733 34.615 0.00 0.00 0.00 3.67
3103 7716 5.774690 TCAGAAAATAATCAGTGCCTTTGGT 59.225 36.000 0.00 0.00 0.00 3.67
3104 7717 6.271488 TCAGAAAATAATCAGTGCCTTTGG 57.729 37.500 0.00 0.00 0.00 3.28
3105 7718 6.810182 CCTTCAGAAAATAATCAGTGCCTTTG 59.190 38.462 0.00 0.00 0.00 2.77
3106 7719 6.494835 ACCTTCAGAAAATAATCAGTGCCTTT 59.505 34.615 0.00 0.00 0.00 3.11
3107 7720 6.012745 ACCTTCAGAAAATAATCAGTGCCTT 58.987 36.000 0.00 0.00 0.00 4.35
3108 7721 5.574188 ACCTTCAGAAAATAATCAGTGCCT 58.426 37.500 0.00 0.00 0.00 4.75
3109 7722 5.904362 ACCTTCAGAAAATAATCAGTGCC 57.096 39.130 0.00 0.00 0.00 5.01
3110 7723 9.508567 GAAATACCTTCAGAAAATAATCAGTGC 57.491 33.333 0.00 0.00 33.86 4.40
3111 7724 9.708222 CGAAATACCTTCAGAAAATAATCAGTG 57.292 33.333 0.00 0.00 33.17 3.66
3112 7725 9.667107 TCGAAATACCTTCAGAAAATAATCAGT 57.333 29.630 0.00 0.00 33.17 3.41
3114 7727 9.667107 ACTCGAAATACCTTCAGAAAATAATCA 57.333 29.630 0.00 0.00 33.17 2.57
3123 7736 9.496873 TGAAATAAAACTCGAAATACCTTCAGA 57.503 29.630 0.00 0.00 33.17 3.27
3124 7737 9.760660 CTGAAATAAAACTCGAAATACCTTCAG 57.239 33.333 0.00 0.00 33.17 3.02
3125 7738 8.726988 CCTGAAATAAAACTCGAAATACCTTCA 58.273 33.333 0.00 0.00 33.17 3.02
3126 7739 8.182227 CCCTGAAATAAAACTCGAAATACCTTC 58.818 37.037 0.00 0.00 0.00 3.46
3127 7740 7.122204 CCCCTGAAATAAAACTCGAAATACCTT 59.878 37.037 0.00 0.00 0.00 3.50
3128 7741 6.602009 CCCCTGAAATAAAACTCGAAATACCT 59.398 38.462 0.00 0.00 0.00 3.08
3129 7742 6.600427 TCCCCTGAAATAAAACTCGAAATACC 59.400 38.462 0.00 0.00 0.00 2.73
3130 7743 7.336176 ACTCCCCTGAAATAAAACTCGAAATAC 59.664 37.037 0.00 0.00 0.00 1.89
3131 7744 7.399634 ACTCCCCTGAAATAAAACTCGAAATA 58.600 34.615 0.00 0.00 0.00 1.40
3132 7745 6.246163 ACTCCCCTGAAATAAAACTCGAAAT 58.754 36.000 0.00 0.00 0.00 2.17
3133 7746 5.627135 ACTCCCCTGAAATAAAACTCGAAA 58.373 37.500 0.00 0.00 0.00 3.46
3134 7747 5.237236 ACTCCCCTGAAATAAAACTCGAA 57.763 39.130 0.00 0.00 0.00 3.71
3135 7748 4.903045 ACTCCCCTGAAATAAAACTCGA 57.097 40.909 0.00 0.00 0.00 4.04
3136 7749 5.731591 AGTACTCCCCTGAAATAAAACTCG 58.268 41.667 0.00 0.00 0.00 4.18
3137 7750 9.327628 GATTAGTACTCCCCTGAAATAAAACTC 57.672 37.037 0.00 0.00 0.00 3.01
3138 7751 9.059023 AGATTAGTACTCCCCTGAAATAAAACT 57.941 33.333 0.00 0.00 0.00 2.66
3139 7752 9.110502 CAGATTAGTACTCCCCTGAAATAAAAC 57.889 37.037 0.00 0.00 0.00 2.43
3140 7753 7.773690 GCAGATTAGTACTCCCCTGAAATAAAA 59.226 37.037 17.36 0.00 0.00 1.52
3141 7754 7.127339 AGCAGATTAGTACTCCCCTGAAATAAA 59.873 37.037 17.36 0.00 0.00 1.40
3142 7755 6.615726 AGCAGATTAGTACTCCCCTGAAATAA 59.384 38.462 17.36 0.00 0.00 1.40
3143 7756 6.143915 AGCAGATTAGTACTCCCCTGAAATA 58.856 40.000 17.36 0.00 0.00 1.40
3144 7757 4.971924 AGCAGATTAGTACTCCCCTGAAAT 59.028 41.667 17.36 4.07 0.00 2.17
3145 7758 4.362677 AGCAGATTAGTACTCCCCTGAAA 58.637 43.478 17.36 0.00 0.00 2.69
3146 7759 3.995636 AGCAGATTAGTACTCCCCTGAA 58.004 45.455 17.36 0.23 0.00 3.02
3147 7760 3.689872 AGCAGATTAGTACTCCCCTGA 57.310 47.619 17.36 0.00 0.00 3.86
3148 7761 3.452627 ACAAGCAGATTAGTACTCCCCTG 59.547 47.826 0.00 6.32 0.00 4.45
3149 7762 3.452627 CACAAGCAGATTAGTACTCCCCT 59.547 47.826 0.00 0.00 0.00 4.79
3150 7763 3.798202 CACAAGCAGATTAGTACTCCCC 58.202 50.000 0.00 0.00 0.00 4.81
3151 7764 3.118592 AGCACAAGCAGATTAGTACTCCC 60.119 47.826 0.00 0.00 45.49 4.30
3152 7765 3.868077 CAGCACAAGCAGATTAGTACTCC 59.132 47.826 0.00 0.00 45.49 3.85
3153 7766 4.499183 ACAGCACAAGCAGATTAGTACTC 58.501 43.478 0.00 0.00 45.49 2.59
3154 7767 4.543590 ACAGCACAAGCAGATTAGTACT 57.456 40.909 0.00 0.00 45.49 2.73
3155 7768 6.910536 ATTACAGCACAAGCAGATTAGTAC 57.089 37.500 0.00 0.00 45.49 2.73
3156 7769 8.258007 ACTTATTACAGCACAAGCAGATTAGTA 58.742 33.333 0.00 0.00 45.49 1.82
3157 7770 7.106239 ACTTATTACAGCACAAGCAGATTAGT 58.894 34.615 0.00 0.00 45.49 2.24
3158 7771 7.545362 ACTTATTACAGCACAAGCAGATTAG 57.455 36.000 0.00 0.00 45.49 1.73
3159 7772 7.710907 CCTACTTATTACAGCACAAGCAGATTA 59.289 37.037 0.00 0.00 45.49 1.75
3160 7773 6.540189 CCTACTTATTACAGCACAAGCAGATT 59.460 38.462 0.00 0.00 45.49 2.40
3161 7774 6.051717 CCTACTTATTACAGCACAAGCAGAT 58.948 40.000 0.00 0.00 45.49 2.90
3162 7775 5.186992 TCCTACTTATTACAGCACAAGCAGA 59.813 40.000 0.00 0.00 45.49 4.26
3163 7776 5.419542 TCCTACTTATTACAGCACAAGCAG 58.580 41.667 0.00 0.00 45.49 4.24
3224 7837 3.261580 TCTGTATGGCGACTGACAAATG 58.738 45.455 0.00 0.00 36.07 2.32
3237 7850 5.294552 GGTTTCTTCCGAAGATTCTGTATGG 59.705 44.000 11.66 0.00 37.38 2.74
3253 7866 5.952347 TGGAGGGAGTATTAGGTTTCTTC 57.048 43.478 0.00 0.00 0.00 2.87
3393 8006 9.203421 TCAATATTATTAGATGCGTCGTGAAAT 57.797 29.630 0.00 3.06 0.00 2.17
3511 8125 3.591835 CTGGCGTGCCACCGTTTT 61.592 61.111 10.06 0.00 41.89 2.43
3596 8210 4.163552 CACTGTCGTGCGAAGAGTATTAA 58.836 43.478 0.00 0.00 33.82 1.40
3646 8260 0.811281 GGGCACATTGCTAGTTGGAC 59.189 55.000 0.00 0.00 44.28 4.02
3803 8418 1.221840 CAACCACATCCCTCCCTCG 59.778 63.158 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.