Multiple sequence alignment - TraesCS7D01G109700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G109700 chr7D 100.000 3755 0 0 1 3755 66376948 66373194 0.000000e+00 6935.0
1 TraesCS7D01G109700 chr7D 92.602 811 24 14 727 1520 69012676 69013467 0.000000e+00 1133.0
2 TraesCS7D01G109700 chr7D 91.700 494 28 2 2634 3114 69014232 69014725 0.000000e+00 673.0
3 TraesCS7D01G109700 chr7D 94.461 343 16 2 3416 3755 69014893 69015235 3.320000e-145 525.0
4 TraesCS7D01G109700 chr7D 97.122 139 4 0 2004 2142 69013652 69013790 6.270000e-58 235.0
5 TraesCS7D01G109700 chr7D 88.742 151 9 6 845 993 69055281 69055425 1.070000e-40 178.0
6 TraesCS7D01G109700 chr7D 95.876 97 4 0 3152 3248 69014720 69014816 1.400000e-34 158.0
7 TraesCS7D01G109700 chr7D 96.970 66 2 0 1521 1586 69013506 69013571 1.100000e-20 111.0
8 TraesCS7D01G109700 chr7D 92.000 75 6 0 2837 2911 66485551 66485477 5.130000e-19 106.0
9 TraesCS7D01G109700 chr7D 96.825 63 2 0 1666 1728 69013595 69013657 5.130000e-19 106.0
10 TraesCS7D01G109700 chr7D 95.385 65 2 1 2303 2367 69014051 69014114 6.640000e-18 102.0
11 TraesCS7D01G109700 chr7D 92.982 57 4 0 2855 2911 68932304 68932360 2.400000e-12 84.2
12 TraesCS7D01G109700 chr7D 93.333 45 3 0 1776 1820 68902745 68902789 2.420000e-07 67.6
13 TraesCS7D01G109700 chr7D 88.235 51 4 2 3063 3112 548816591 548816542 4.050000e-05 60.2
14 TraesCS7D01G109700 chr7A 91.924 1362 45 17 653 1997 74668677 74669990 0.000000e+00 1845.0
15 TraesCS7D01G109700 chr7A 90.157 762 27 14 809 1523 70806098 70805338 0.000000e+00 948.0
16 TraesCS7D01G109700 chr7A 89.294 411 23 2 1521 1918 70805310 70804908 2.610000e-136 496.0
17 TraesCS7D01G109700 chr7A 81.570 586 75 15 912 1477 70898585 70898013 1.590000e-123 453.0
18 TraesCS7D01G109700 chr7A 82.271 502 69 10 987 1477 71114671 71114179 2.090000e-112 416.0
19 TraesCS7D01G109700 chr7A 78.719 484 59 15 995 1477 71134714 71134274 2.210000e-72 283.0
20 TraesCS7D01G109700 chr7A 86.957 253 15 6 2785 3022 70780834 70780585 6.180000e-68 268.0
21 TraesCS7D01G109700 chr7A 82.877 292 22 16 3465 3734 70780241 70779956 1.740000e-58 237.0
22 TraesCS7D01G109700 chr7A 94.631 149 7 1 1998 2145 70450941 70450793 2.920000e-56 230.0
23 TraesCS7D01G109700 chr7A 93.151 146 9 1 1998 2142 95468490 95468635 2.940000e-51 213.0
24 TraesCS7D01G109700 chr7A 95.349 129 6 0 2637 2765 70781029 70780901 4.920000e-49 206.0
25 TraesCS7D01G109700 chr7A 93.333 135 8 1 2140 2273 74670222 74670356 8.230000e-47 198.0
26 TraesCS7D01G109700 chr7A 87.952 166 12 5 2634 2796 74670892 74671052 4.950000e-44 189.0
27 TraesCS7D01G109700 chr7A 93.651 126 8 0 2786 2911 74671082 74671207 4.950000e-44 189.0
28 TraesCS7D01G109700 chr7A 78.273 359 28 25 2303 2638 74670487 74670818 6.400000e-43 185.0
29 TraesCS7D01G109700 chr7A 79.259 270 23 18 2669 2916 71121059 71120801 1.400000e-34 158.0
30 TraesCS7D01G109700 chr7A 86.275 153 11 5 845 993 74883328 74883474 1.400000e-34 158.0
31 TraesCS7D01G109700 chr7A 95.833 96 3 1 2679 2773 645738089 645737994 1.810000e-33 154.0
32 TraesCS7D01G109700 chr7A 87.037 108 5 1 3109 3216 70780491 70780393 3.070000e-21 113.0
33 TraesCS7D01G109700 chr7A 93.333 45 3 0 1776 1820 74593334 74593378 2.420000e-07 67.6
34 TraesCS7D01G109700 chr7A 88.235 51 4 2 3063 3112 634352458 634352409 4.050000e-05 60.2
35 TraesCS7D01G109700 chr7B 87.716 1156 84 33 826 1938 10581846 10582986 0.000000e+00 1295.0
36 TraesCS7D01G109700 chr7B 88.659 917 36 14 654 1523 7561038 7560143 0.000000e+00 1055.0
37 TraesCS7D01G109700 chr7B 96.501 343 12 0 1599 1941 7560060 7559718 5.440000e-158 568.0
38 TraesCS7D01G109700 chr7B 94.269 349 20 0 1174 1522 622577178 622577526 5.520000e-148 534.0
39 TraesCS7D01G109700 chr7B 93.696 349 22 0 1174 1522 702697177 702697525 1.190000e-144 523.0
40 TraesCS7D01G109700 chr7B 82.149 577 79 12 912 1477 7732414 7731851 1.220000e-129 473.0
41 TraesCS7D01G109700 chr7B 85.403 459 37 10 2630 3062 10583917 10584371 2.060000e-122 449.0
42 TraesCS7D01G109700 chr7B 85.912 362 28 4 3416 3755 10584587 10584947 7.660000e-97 364.0
43 TraesCS7D01G109700 chr7B 80.077 517 39 22 2153 2638 7559394 7558911 3.620000e-85 326.0
44 TraesCS7D01G109700 chr7B 91.189 227 13 3 653 878 10940186 10940406 6.100000e-78 302.0
45 TraesCS7D01G109700 chr7B 94.631 149 6 2 1998 2145 7559626 7559479 2.920000e-56 230.0
46 TraesCS7D01G109700 chr7B 94.595 148 5 2 1998 2142 10583081 10583228 3.770000e-55 226.0
47 TraesCS7D01G109700 chr7B 93.960 149 8 1 1998 2145 154310195 154310047 1.360000e-54 224.0
48 TraesCS7D01G109700 chr7B 92.357 157 11 1 2639 2795 7558832 7558677 4.880000e-54 222.0
49 TraesCS7D01G109700 chr7B 93.836 146 7 2 1998 2142 702698533 702698677 6.310000e-53 219.0
50 TraesCS7D01G109700 chr7B 82.061 262 24 7 3417 3658 7558145 7557887 6.360000e-48 202.0
51 TraesCS7D01G109700 chr7B 85.882 170 17 5 2785 2950 7558653 7558487 1.390000e-39 174.0
52 TraesCS7D01G109700 chr7B 85.217 115 8 2 3162 3267 7558331 7558217 3.970000e-20 110.0
53 TraesCS7D01G109700 chr7B 91.781 73 6 0 2837 2909 7728622 7728550 6.640000e-18 102.0
54 TraesCS7D01G109700 chr7B 92.424 66 5 0 3025 3090 7558441 7558376 1.110000e-15 95.3
55 TraesCS7D01G109700 chr7B 98.077 52 1 0 1522 1573 7560104 7560053 1.440000e-14 91.6
56 TraesCS7D01G109700 chr7B 97.059 34 0 1 2560 2592 7559073 7559040 5.240000e-04 56.5
57 TraesCS7D01G109700 chr5B 93.202 662 40 1 1 657 687791071 687790410 0.000000e+00 968.0
58 TraesCS7D01G109700 chr5B 93.333 150 9 1 1997 2145 13370982 13370833 1.760000e-53 220.0
59 TraesCS7D01G109700 chrUn 91.975 486 33 2 2634 3114 84524912 84525396 0.000000e+00 676.0
60 TraesCS7D01G109700 chrUn 93.043 345 20 3 3412 3752 84525583 84525927 5.600000e-138 501.0
61 TraesCS7D01G109700 chrUn 84.595 370 35 14 1775 2142 84524072 84524421 7.720000e-92 348.0
62 TraesCS7D01G109700 chrUn 95.172 145 7 0 3154 3298 84525393 84525537 2.920000e-56 230.0
63 TraesCS7D01G109700 chrUn 95.082 61 3 0 3323 3383 84525531 84525591 3.090000e-16 97.1
64 TraesCS7D01G109700 chrUn 97.297 37 1 0 2140 2176 84524558 84524594 3.130000e-06 63.9
65 TraesCS7D01G109700 chr6B 93.983 349 21 0 1174 1522 521450234 521450582 2.570000e-146 529.0
66 TraesCS7D01G109700 chr6B 91.667 84 7 0 2140 2223 135304238 135304321 2.370000e-22 117.0
67 TraesCS7D01G109700 chr6B 88.312 77 8 1 3 78 650796527 650796451 1.440000e-14 91.6
68 TraesCS7D01G109700 chr1A 93.410 349 23 0 1174 1522 61237132 61236784 5.560000e-143 518.0
69 TraesCS7D01G109700 chr1A 89.831 59 5 1 3 60 582756688 582756630 1.450000e-09 75.0
70 TraesCS7D01G109700 chr2A 95.638 298 12 1 1 297 69317997 69318294 9.440000e-131 477.0
71 TraesCS7D01G109700 chr2A 90.909 66 6 0 148 213 776944456 776944391 5.170000e-14 89.8
72 TraesCS7D01G109700 chr5D 83.452 423 55 11 150 563 462621156 462620740 2.740000e-101 379.0
73 TraesCS7D01G109700 chr3A 93.197 147 8 2 1998 2143 129249099 129248954 8.170000e-52 215.0
74 TraesCS7D01G109700 chr3A 92.857 84 6 0 2140 2223 36517635 36517552 5.090000e-24 122.0
75 TraesCS7D01G109700 chr1D 79.835 243 34 10 256 492 443427206 443427439 3.000000e-36 163.0
76 TraesCS7D01G109700 chr4B 92.857 84 6 0 2140 2223 155552446 155552529 5.090000e-24 122.0
77 TraesCS7D01G109700 chr4B 92.857 84 6 0 2140 2223 661349192 661349275 5.090000e-24 122.0
78 TraesCS7D01G109700 chr2D 92.857 84 6 0 2140 2223 260140544 260140627 5.090000e-24 122.0
79 TraesCS7D01G109700 chr2B 83.212 137 7 6 868 990 135794763 135794897 1.100000e-20 111.0
80 TraesCS7D01G109700 chr2B 83.871 124 5 5 868 977 135792512 135792634 1.840000e-18 104.0
81 TraesCS7D01G109700 chr1B 91.429 70 6 0 148 217 184922967 184923036 3.090000e-16 97.1
82 TraesCS7D01G109700 chr3B 94.828 58 3 0 156 213 89854205 89854148 1.440000e-14 91.6
83 TraesCS7D01G109700 chr3B 100.000 28 0 0 607 634 312142898 312142871 7.000000e-03 52.8
84 TraesCS7D01G109700 chr4D 90.909 44 3 1 602 644 442846590 442846633 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G109700 chr7D 66373194 66376948 3754 True 6935.000000 6935 100.000000 1 3755 1 chr7D.!!$R1 3754
1 TraesCS7D01G109700 chr7D 69012676 69015235 2559 False 380.375000 1133 95.117625 727 3755 8 chr7D.!!$F4 3028
2 TraesCS7D01G109700 chr7A 70804908 70806098 1190 True 722.000000 948 89.725500 809 1918 2 chr7A.!!$R9 1109
3 TraesCS7D01G109700 chr7A 74668677 74671207 2530 False 521.200000 1845 89.026600 653 2911 5 chr7A.!!$F4 2258
4 TraesCS7D01G109700 chr7A 70898013 70898585 572 True 453.000000 453 81.570000 912 1477 1 chr7A.!!$R2 565
5 TraesCS7D01G109700 chr7A 70779956 70781029 1073 True 206.000000 268 88.055000 2637 3734 4 chr7A.!!$R8 1097
6 TraesCS7D01G109700 chr7B 10581846 10584947 3101 False 583.500000 1295 88.406500 826 3755 4 chr7B.!!$F3 2929
7 TraesCS7D01G109700 chr7B 702697177 702698677 1500 False 371.000000 523 93.766000 1174 2142 2 chr7B.!!$F4 968
8 TraesCS7D01G109700 chr7B 7728550 7732414 3864 True 287.500000 473 86.965000 912 2909 2 chr7B.!!$R3 1997
9 TraesCS7D01G109700 chr7B 7557887 7561038 3151 True 284.581818 1055 90.267727 654 3658 11 chr7B.!!$R2 3004
10 TraesCS7D01G109700 chr5B 687790410 687791071 661 True 968.000000 968 93.202000 1 657 1 chr5B.!!$R2 656
11 TraesCS7D01G109700 chrUn 84524072 84525927 1855 False 319.333333 676 92.860667 1775 3752 6 chrUn.!!$F1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.957395 GACGACCAGAGACGGGTGTA 60.957 60.000 0.0 0.0 39.19 2.90 F
596 602 1.066215 TGAGGGACATGACATCCAACG 60.066 52.381 0.0 0.0 38.06 4.10 F
1990 2702 1.133325 GCCCTCTCCTACTCATCTCCA 60.133 57.143 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2702 1.003580 CAGTACACAAGCTGGGGACAT 59.996 52.381 0.0 0.0 41.51 3.06 R
1993 2705 1.429930 TTCAGTACACAAGCTGGGGA 58.570 50.000 0.0 0.0 33.81 4.81 R
3308 6590 0.108138 CGTCCACCTGAGAATCCACC 60.108 60.000 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.685836 ACAACGTGAAAAGCTACAACC 57.314 42.857 0.00 0.00 0.00 3.77
60 61 1.235724 GTGAAAAGCTACAACCGGCT 58.764 50.000 0.00 0.00 40.85 5.52
105 106 1.956477 AGTTTTGCTACAACCAGCCTG 59.044 47.619 0.00 0.00 41.04 4.85
123 124 3.066760 GCCTGTTGTGTTTTGCTAGAACT 59.933 43.478 0.00 0.00 0.00 3.01
147 148 4.489771 CACTCCCCGACCATGGCC 62.490 72.222 13.04 0.00 0.00 5.36
174 175 1.238439 CCCAAGTGTGCTACAACCAG 58.762 55.000 0.00 0.00 0.00 4.00
196 197 2.215196 GACCAAAAGTGCTACAACCGA 58.785 47.619 0.00 0.00 0.00 4.69
213 214 4.141855 ACCGACAAGAAAATTTGCTACG 57.858 40.909 0.00 6.28 0.00 3.51
215 216 4.454504 ACCGACAAGAAAATTTGCTACGAT 59.545 37.500 16.61 2.82 0.00 3.73
254 255 2.847234 AACCGGTGACTGGCCAGA 60.847 61.111 39.19 15.70 0.00 3.86
264 265 1.484240 GACTGGCCAGAGCTATGAACT 59.516 52.381 39.19 12.70 39.73 3.01
299 300 4.357947 GAGCAGCGACCGTGGTGA 62.358 66.667 0.00 0.00 39.68 4.02
326 327 2.996621 GCTACAAGCTCACAGGTAGTTG 59.003 50.000 0.00 0.00 38.45 3.16
372 373 4.842531 TCCATGCTGGAAAAGATGTCTA 57.157 40.909 2.78 0.00 45.00 2.59
424 425 4.361971 AGGACGACTGGCGAGGGA 62.362 66.667 11.23 0.00 44.57 4.20
453 454 2.785921 CGAGGACGACCAGAGACG 59.214 66.667 6.71 0.45 42.66 4.18
459 460 0.957395 GACGACCAGAGACGGGTGTA 60.957 60.000 0.00 0.00 39.19 2.90
535 541 1.745087 CAGGGTGTATTTTGCAGCGAT 59.255 47.619 0.00 0.00 35.42 4.58
572 578 2.992593 GGTGGAAGAAGGAGATCCAAC 58.007 52.381 0.92 0.00 44.41 3.77
596 602 1.066215 TGAGGGACATGACATCCAACG 60.066 52.381 0.00 0.00 38.06 4.10
605 611 3.630148 CATCCAACGGCTAGCGCG 61.630 66.667 19.72 19.72 36.88 6.86
633 639 3.389662 AAATTTGGGCCGGCGCAT 61.390 55.556 41.88 28.19 38.65 4.73
634 640 2.953488 AAATTTGGGCCGGCGCATT 61.953 52.632 41.88 31.76 38.65 3.56
717 723 3.119990 TCAAATTCGGCGAGGTTTGATTC 60.120 43.478 30.94 0.00 36.11 2.52
1269 1346 2.945066 GAGCAGCGCGACTACGAC 60.945 66.667 12.10 0.00 42.66 4.34
1504 1636 1.950484 GCCCGCTTCTTGATTCTTCCA 60.950 52.381 0.00 0.00 0.00 3.53
1516 1648 1.234821 TTCTTCCAGAATTTGCGCGT 58.765 45.000 8.43 0.00 0.00 6.01
1526 1945 1.745232 ATTTGCGCGTATTTGGGAGA 58.255 45.000 8.43 0.00 0.00 3.71
1840 2488 1.337167 CGAGATAGGCATCGGCATGAA 60.337 52.381 0.00 0.00 43.71 2.57
1864 2520 2.212900 CTCGTCATGTGCGTCCAGGA 62.213 60.000 10.94 0.00 0.00 3.86
1990 2702 1.133325 GCCCTCTCCTACTCATCTCCA 60.133 57.143 0.00 0.00 0.00 3.86
1993 2705 3.437784 CCCTCTCCTACTCATCTCCATGT 60.438 52.174 0.00 0.00 0.00 3.21
1994 2706 3.826157 CCTCTCCTACTCATCTCCATGTC 59.174 52.174 0.00 0.00 0.00 3.06
1995 2707 3.826157 CTCTCCTACTCATCTCCATGTCC 59.174 52.174 0.00 0.00 0.00 4.02
1996 2708 2.896685 CTCCTACTCATCTCCATGTCCC 59.103 54.545 0.00 0.00 0.00 4.46
2008 2741 1.453155 CATGTCCCCAGCTTGTGTAC 58.547 55.000 0.00 0.00 0.00 2.90
2066 2805 0.610174 TGCTGCTACTCTGGTTCAGG 59.390 55.000 0.00 0.00 31.51 3.86
2142 2890 5.620206 TGAATGCTAGAAAGTGGTCTGAAA 58.380 37.500 0.00 0.00 0.00 2.69
2145 2893 5.036117 TGCTAGAAAGTGGTCTGAAACTT 57.964 39.130 0.00 2.12 38.25 2.66
2146 2894 5.437060 TGCTAGAAAGTGGTCTGAAACTTT 58.563 37.500 15.66 15.66 46.56 2.66
2147 2895 5.296780 TGCTAGAAAGTGGTCTGAAACTTTG 59.703 40.000 18.94 9.85 44.53 2.77
2169 3099 4.714308 TGGAACTTGAAAACCCAAATCTGT 59.286 37.500 0.00 0.00 0.00 3.41
2210 3140 5.719173 AGCTTTACAGAGAAGACACTGATC 58.281 41.667 0.00 0.00 37.95 2.92
2269 3240 5.147767 AGATGTATCCCACAGCACTACATA 58.852 41.667 0.00 0.00 46.29 2.29
2272 3243 5.670485 TGTATCCCACAGCACTACATAAAG 58.330 41.667 0.00 0.00 31.89 1.85
2274 3245 6.852033 TGTATCCCACAGCACTACATAAAGTG 60.852 42.308 0.00 0.00 40.15 3.16
2275 3246 8.938772 TGTATCCCACAGCACTACATAAAGTGA 61.939 40.741 8.13 0.00 39.85 3.41
2295 3270 8.553459 AAGTGATGTTCAGATTTAGTAAGGTG 57.447 34.615 0.00 0.00 0.00 4.00
2297 3272 7.604164 AGTGATGTTCAGATTTAGTAAGGTGTG 59.396 37.037 0.00 0.00 0.00 3.82
2298 3273 7.602644 GTGATGTTCAGATTTAGTAAGGTGTGA 59.397 37.037 0.00 0.00 0.00 3.58
2299 3274 8.154203 TGATGTTCAGATTTAGTAAGGTGTGAA 58.846 33.333 6.09 6.09 0.00 3.18
2301 3276 7.506114 TGTTCAGATTTAGTAAGGTGTGAACT 58.494 34.615 24.49 0.43 41.89 3.01
2303 3278 7.962964 TCAGATTTAGTAAGGTGTGAACTTG 57.037 36.000 0.00 0.00 0.00 3.16
2304 3279 7.732025 TCAGATTTAGTAAGGTGTGAACTTGA 58.268 34.615 0.00 0.00 0.00 3.02
2370 3492 6.702329 AGAGACACTAAATGAAACAGTAGGG 58.298 40.000 0.00 0.00 0.00 3.53
2416 3538 5.946377 AGCTAGTTGGTTATTTGGGAGAAAG 59.054 40.000 0.00 0.00 0.00 2.62
2423 3545 7.610580 TGGTTATTTGGGAGAAAGTCATTTT 57.389 32.000 0.00 0.00 0.00 1.82
2427 3571 9.974980 GTTATTTGGGAGAAAGTCATTTTAACA 57.025 29.630 0.00 0.00 0.00 2.41
2508 3731 8.082242 CCATTTGGTAGAAACTTTGGAACTTAG 58.918 37.037 0.00 0.00 0.00 2.18
2537 3760 3.837213 ATCGGTCAAGTCATGCTTTTG 57.163 42.857 0.37 0.00 34.69 2.44
2543 3766 1.001487 CAAGTCATGCTTTTGGCGTCA 60.001 47.619 0.00 0.00 45.43 4.35
2547 3770 2.420022 GTCATGCTTTTGGCGTCATAGT 59.580 45.455 0.00 0.00 45.43 2.12
2553 3776 4.941263 TGCTTTTGGCGTCATAGTTAAGAT 59.059 37.500 0.00 0.00 45.43 2.40
2696 4005 0.617413 ATGGTGCCTGACTTCCTCAG 59.383 55.000 0.00 0.00 45.63 3.35
2968 6166 5.103290 TGGTTCGTAATGTTTGCTTCTTC 57.897 39.130 0.00 0.00 0.00 2.87
2980 6178 0.803740 GCTTCTTCTTCTGGCTGCTG 59.196 55.000 0.00 0.00 0.00 4.41
3019 6217 4.666655 CGAGTGCATTTCTTTTAGGTGTCG 60.667 45.833 0.00 0.00 0.00 4.35
3023 6243 3.188460 GCATTTCTTTTAGGTGTCGCAGA 59.812 43.478 0.00 0.00 0.00 4.26
3040 6260 3.181516 CGCAGAAGTTAATTGAGCACTCC 60.182 47.826 0.00 0.00 0.00 3.85
3117 6382 9.734620 TTATTTTGACAGAGTTCTGAACATTTG 57.265 29.630 21.50 16.99 46.59 2.32
3118 6383 5.756195 TTGACAGAGTTCTGAACATTTGG 57.244 39.130 21.50 9.12 46.59 3.28
3119 6384 4.780815 TGACAGAGTTCTGAACATTTGGT 58.219 39.130 21.50 11.88 46.59 3.67
3120 6385 5.192927 TGACAGAGTTCTGAACATTTGGTT 58.807 37.500 21.50 0.00 46.59 3.67
3121 6386 5.652014 TGACAGAGTTCTGAACATTTGGTTT 59.348 36.000 21.50 0.00 46.59 3.27
3122 6387 6.826231 TGACAGAGTTCTGAACATTTGGTTTA 59.174 34.615 21.50 4.70 46.59 2.01
3123 6388 7.012327 TGACAGAGTTCTGAACATTTGGTTTAG 59.988 37.037 21.50 0.00 46.59 1.85
3124 6389 6.263168 ACAGAGTTCTGAACATTTGGTTTAGG 59.737 38.462 21.50 1.87 46.59 2.69
3125 6390 5.241728 AGAGTTCTGAACATTTGGTTTAGGC 59.758 40.000 21.50 0.00 41.92 3.93
3126 6391 5.140454 AGTTCTGAACATTTGGTTTAGGCT 58.860 37.500 21.50 0.00 41.92 4.58
3127 6392 5.010012 AGTTCTGAACATTTGGTTTAGGCTG 59.990 40.000 21.50 0.00 41.92 4.85
3128 6393 4.469657 TCTGAACATTTGGTTTAGGCTGT 58.530 39.130 0.00 0.00 41.92 4.40
3129 6394 4.892934 TCTGAACATTTGGTTTAGGCTGTT 59.107 37.500 0.00 0.00 41.92 3.16
3130 6395 4.942852 TGAACATTTGGTTTAGGCTGTTG 58.057 39.130 0.00 0.00 40.63 3.33
3131 6396 4.404073 TGAACATTTGGTTTAGGCTGTTGT 59.596 37.500 0.00 0.00 40.63 3.32
3132 6397 5.594725 TGAACATTTGGTTTAGGCTGTTGTA 59.405 36.000 0.00 0.00 40.63 2.41
3133 6398 6.096987 TGAACATTTGGTTTAGGCTGTTGTAA 59.903 34.615 0.00 0.00 40.63 2.41
3134 6399 6.472686 ACATTTGGTTTAGGCTGTTGTAAA 57.527 33.333 0.00 0.00 0.00 2.01
3135 6400 6.879400 ACATTTGGTTTAGGCTGTTGTAAAA 58.121 32.000 0.00 0.00 0.00 1.52
3136 6401 6.983890 ACATTTGGTTTAGGCTGTTGTAAAAG 59.016 34.615 0.00 0.00 0.00 2.27
3137 6402 6.777213 TTTGGTTTAGGCTGTTGTAAAAGA 57.223 33.333 0.00 0.00 0.00 2.52
3138 6403 6.777213 TTGGTTTAGGCTGTTGTAAAAGAA 57.223 33.333 0.00 0.00 0.00 2.52
3139 6404 6.969993 TGGTTTAGGCTGTTGTAAAAGAAT 57.030 33.333 0.00 0.00 0.00 2.40
3140 6405 7.354751 TGGTTTAGGCTGTTGTAAAAGAATT 57.645 32.000 0.00 0.00 0.00 2.17
3141 6406 7.206687 TGGTTTAGGCTGTTGTAAAAGAATTG 58.793 34.615 0.00 0.00 0.00 2.32
3142 6407 7.068839 TGGTTTAGGCTGTTGTAAAAGAATTGA 59.931 33.333 0.00 0.00 0.00 2.57
3143 6408 7.923878 GGTTTAGGCTGTTGTAAAAGAATTGAA 59.076 33.333 0.00 0.00 0.00 2.69
3144 6409 9.476202 GTTTAGGCTGTTGTAAAAGAATTGAAT 57.524 29.630 0.00 0.00 0.00 2.57
3148 6413 8.637986 AGGCTGTTGTAAAAGAATTGAATAACA 58.362 29.630 0.00 0.00 0.00 2.41
3149 6414 9.423061 GGCTGTTGTAAAAGAATTGAATAACAT 57.577 29.630 0.00 0.00 0.00 2.71
3171 6445 3.963374 TGTGAACAAAATTGGATCCCACA 59.037 39.130 9.90 9.78 30.78 4.17
3257 6539 9.933723 ACACTATAATAATCGTGGGTATTAACC 57.066 33.333 0.00 0.00 45.97 2.85
3305 6587 1.228769 TCCCTGTACGCTGGACACT 60.229 57.895 1.55 0.00 35.96 3.55
3306 6588 1.215647 CCCTGTACGCTGGACACTC 59.784 63.158 1.55 0.00 35.96 3.51
3307 6589 1.532604 CCCTGTACGCTGGACACTCA 61.533 60.000 1.55 0.00 35.96 3.41
3308 6590 0.109086 CCTGTACGCTGGACACTCAG 60.109 60.000 0.00 0.00 35.96 3.35
3309 6591 0.109086 CTGTACGCTGGACACTCAGG 60.109 60.000 0.00 0.00 35.43 3.86
3327 6615 0.108138 GGTGGATTCTCAGGTGGACG 60.108 60.000 0.00 0.00 0.00 4.79
3353 6641 4.518970 ACGGCTAGACAAATCAACAAACAT 59.481 37.500 0.00 0.00 0.00 2.71
3380 6668 1.470890 GGCACAGCACGGCTAATTAAA 59.529 47.619 0.00 0.00 36.40 1.52
3381 6669 2.477863 GGCACAGCACGGCTAATTAAAG 60.478 50.000 0.00 0.00 36.40 1.85
3382 6670 2.418628 GCACAGCACGGCTAATTAAAGA 59.581 45.455 0.00 0.00 36.40 2.52
3383 6671 3.485877 GCACAGCACGGCTAATTAAAGAG 60.486 47.826 0.00 0.00 36.40 2.85
3384 6672 3.063997 CACAGCACGGCTAATTAAAGAGG 59.936 47.826 0.00 0.00 36.40 3.69
3385 6673 3.055385 ACAGCACGGCTAATTAAAGAGGA 60.055 43.478 0.00 0.00 36.40 3.71
3386 6674 3.938963 CAGCACGGCTAATTAAAGAGGAA 59.061 43.478 0.00 0.00 36.40 3.36
3387 6675 4.394920 CAGCACGGCTAATTAAAGAGGAAA 59.605 41.667 0.00 0.00 36.40 3.13
3388 6676 4.395231 AGCACGGCTAATTAAAGAGGAAAC 59.605 41.667 0.00 0.00 36.99 2.78
3389 6677 5.803470 AGCACGGCTAATTAAAGAGGAAACT 60.803 40.000 0.00 0.00 40.18 2.66
3390 6678 5.583457 GCACGGCTAATTAAAGAGGAAACTA 59.417 40.000 0.00 0.00 44.43 2.24
3391 6679 6.238130 GCACGGCTAATTAAAGAGGAAACTAG 60.238 42.308 0.00 0.00 44.43 2.57
3392 6680 6.817140 CACGGCTAATTAAAGAGGAAACTAGT 59.183 38.462 0.00 0.00 44.43 2.57
3393 6681 7.977853 CACGGCTAATTAAAGAGGAAACTAGTA 59.022 37.037 0.00 0.00 44.43 1.82
3394 6682 7.978414 ACGGCTAATTAAAGAGGAAACTAGTAC 59.022 37.037 0.00 0.00 44.43 2.73
3395 6683 8.196103 CGGCTAATTAAAGAGGAAACTAGTACT 58.804 37.037 0.00 0.00 44.43 2.73
3402 6690 9.578439 TTAAAGAGGAAACTAGTACTATTTCGC 57.422 33.333 19.93 16.66 44.43 4.70
3403 6691 6.770746 AGAGGAAACTAGTACTATTTCGCA 57.229 37.500 19.93 0.00 44.43 5.10
3404 6692 7.166691 AGAGGAAACTAGTACTATTTCGCAA 57.833 36.000 19.93 0.00 44.43 4.85
3405 6693 7.609056 AGAGGAAACTAGTACTATTTCGCAAA 58.391 34.615 19.93 0.00 44.43 3.68
3406 6694 8.092687 AGAGGAAACTAGTACTATTTCGCAAAA 58.907 33.333 19.93 0.00 44.43 2.44
3407 6695 8.611654 AGGAAACTAGTACTATTTCGCAAAAA 57.388 30.769 19.93 0.00 40.61 1.94
3441 6729 0.958091 CACAAAGGCCACCGATTTCA 59.042 50.000 5.01 0.00 0.00 2.69
3461 6749 3.603365 CCCTCGTTTCAATGGGGC 58.397 61.111 0.00 0.00 34.02 5.80
3507 6796 3.283751 CTCCTCTTCGAGTCCATACAGT 58.716 50.000 0.00 0.00 0.00 3.55
3513 6802 5.227908 TCTTCGAGTCCATACAGTGAAAAC 58.772 41.667 0.00 0.00 0.00 2.43
3530 6819 4.825085 TGAAAACTACACATTTGGTCCTCC 59.175 41.667 0.00 0.00 0.00 4.30
3653 6963 4.742201 CCCTCCCGCACGTCACAG 62.742 72.222 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.585500 TCACGTTGTTTGTAGCTTATGTC 57.415 39.130 0.00 0.00 0.00 3.06
60 61 2.671619 GGTTGCAGCTTGGCCGTA 60.672 61.111 0.00 0.00 0.00 4.02
66 67 2.180017 GCGATGGGTTGCAGCTTG 59.820 61.111 0.00 0.00 34.69 4.01
105 106 4.455124 CGCTAGTTCTAGCAAAACACAAC 58.545 43.478 25.01 0.00 42.95 3.32
165 166 3.243068 GCACTTTTGGTCACTGGTTGTAG 60.243 47.826 0.00 0.00 0.00 2.74
174 175 2.286772 CGGTTGTAGCACTTTTGGTCAC 60.287 50.000 0.00 0.00 34.50 3.67
196 197 4.082245 CCCCATCGTAGCAAATTTTCTTGT 60.082 41.667 0.00 0.00 0.00 3.16
213 214 2.203126 CCTCAGCTTCGCCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
215 216 4.020617 CACCTCAGCTTCGCCCCA 62.021 66.667 0.00 0.00 0.00 4.96
254 255 0.108138 GGTGGTCGCAGTTCATAGCT 60.108 55.000 0.00 0.00 0.00 3.32
294 295 0.319555 GCTTGTAGCACTCGTCACCA 60.320 55.000 0.00 0.00 41.89 4.17
297 298 0.958822 TGAGCTTGTAGCACTCGTCA 59.041 50.000 1.09 0.00 45.56 4.35
299 300 0.673985 TGTGAGCTTGTAGCACTCGT 59.326 50.000 1.09 0.00 45.56 4.18
326 327 1.008767 CCCCTCGTCGCGTTCTATC 60.009 63.158 5.77 0.00 0.00 2.08
372 373 4.488790 CTGTTTGCAGCTCCCTGT 57.511 55.556 0.00 0.00 41.26 4.00
437 438 2.408241 CCCGTCTCTGGTCGTCCTC 61.408 68.421 0.00 0.00 34.23 3.71
453 454 4.791069 TCCTCCCCCGCTACACCC 62.791 72.222 0.00 0.00 0.00 4.61
506 512 0.537188 AATACACCCTGCAGGAGTCG 59.463 55.000 34.91 19.40 40.35 4.18
513 519 0.602562 GCTGCAAAATACACCCTGCA 59.397 50.000 0.00 0.00 42.28 4.41
516 522 2.128771 ATCGCTGCAAAATACACCCT 57.871 45.000 0.00 0.00 0.00 4.34
535 541 2.618302 CCACCTCTCGTTGACCTCTCTA 60.618 54.545 0.00 0.00 0.00 2.43
563 569 1.144936 CCCTCAGCCGTTGGATCTC 59.855 63.158 0.00 0.00 0.00 2.75
572 578 0.531532 GATGTCATGTCCCTCAGCCG 60.532 60.000 0.00 0.00 0.00 5.52
633 639 2.671619 GCCAACGCTAGGTGCCAA 60.672 61.111 0.00 0.00 38.78 4.52
634 640 4.715523 GGCCAACGCTAGGTGCCA 62.716 66.667 0.00 0.00 38.78 4.92
638 644 3.432262 AAAAAGGCCAACGCTAGGT 57.568 47.368 5.01 0.00 34.44 3.08
685 691 4.101942 TCGCCGAATTTGATACAAAATGC 58.898 39.130 0.00 0.00 30.21 3.56
717 723 6.405953 CCCACAACAAGAGTATAGGAGTAGTG 60.406 46.154 0.00 0.00 0.00 2.74
854 879 2.396590 TCAAAGAAGGTCCATACGCC 57.603 50.000 0.00 0.00 0.00 5.68
869 898 0.996583 AGGCGGGGGAGTATTTCAAA 59.003 50.000 0.00 0.00 0.00 2.69
1269 1346 2.044252 TCCTCCTCCTCCCGTTCG 60.044 66.667 0.00 0.00 0.00 3.95
1504 1636 2.088423 TCCCAAATACGCGCAAATTCT 58.912 42.857 5.73 0.00 0.00 2.40
1516 1648 6.953520 ACAGAACCATGAATTTCTCCCAAATA 59.046 34.615 0.00 0.00 29.23 1.40
1526 1945 4.344679 TGCCAAGAACAGAACCATGAATTT 59.655 37.500 0.00 0.00 0.00 1.82
1990 2702 1.003580 CAGTACACAAGCTGGGGACAT 59.996 52.381 0.00 0.00 41.51 3.06
1993 2705 1.429930 TTCAGTACACAAGCTGGGGA 58.570 50.000 0.00 0.00 33.81 4.81
1994 2706 1.880027 GTTTCAGTACACAAGCTGGGG 59.120 52.381 0.00 0.00 33.81 4.96
1995 2707 2.549754 CAGTTTCAGTACACAAGCTGGG 59.450 50.000 10.87 0.00 33.81 4.45
1996 2708 3.206150 ACAGTTTCAGTACACAAGCTGG 58.794 45.455 18.57 0.00 35.70 4.85
2008 2741 9.757227 TGTTTTTGGGATTAATAACAGTTTCAG 57.243 29.630 0.00 0.00 31.19 3.02
2066 2805 6.095021 AGTTCAAACAAACTCCCAAGTCTTAC 59.905 38.462 0.00 0.00 34.37 2.34
2142 2890 5.491323 TTTGGGTTTTCAAGTTCCAAAGT 57.509 34.783 0.00 0.00 41.02 2.66
2145 2893 5.188751 ACAGATTTGGGTTTTCAAGTTCCAA 59.811 36.000 0.00 0.00 35.91 3.53
2146 2894 4.714308 ACAGATTTGGGTTTTCAAGTTCCA 59.286 37.500 0.00 0.00 0.00 3.53
2147 2895 5.276461 ACAGATTTGGGTTTTCAAGTTCC 57.724 39.130 0.00 0.00 0.00 3.62
2169 3099 8.372459 TGTAAAGCTAAACTAGGATGACTGAAA 58.628 33.333 0.00 0.00 0.00 2.69
2210 3140 8.378172 TCACACCTTACTCAAAACAATTAGAG 57.622 34.615 0.00 0.00 0.00 2.43
2269 3240 9.003658 CACCTTACTAAATCTGAACATCACTTT 57.996 33.333 0.00 0.00 0.00 2.66
2272 3243 7.602644 TCACACCTTACTAAATCTGAACATCAC 59.397 37.037 0.00 0.00 0.00 3.06
2274 3245 8.443937 GTTCACACCTTACTAAATCTGAACATC 58.556 37.037 0.00 0.00 37.35 3.06
2275 3246 8.157476 AGTTCACACCTTACTAAATCTGAACAT 58.843 33.333 9.24 0.00 39.03 2.71
2276 3247 7.506114 AGTTCACACCTTACTAAATCTGAACA 58.494 34.615 9.24 0.00 39.03 3.18
2283 3258 8.747538 ACTTTCAAGTTCACACCTTACTAAAT 57.252 30.769 0.00 0.00 35.21 1.40
2287 3262 7.120923 TCTACTTTCAAGTTCACACCTTACT 57.879 36.000 0.00 0.00 40.37 2.24
2291 3266 5.990668 ACTTCTACTTTCAAGTTCACACCT 58.009 37.500 0.00 0.00 40.37 4.00
2292 3267 6.679327 AACTTCTACTTTCAAGTTCACACC 57.321 37.500 0.00 0.00 38.22 4.16
2295 3270 9.665264 CCATTTAACTTCTACTTTCAAGTTCAC 57.335 33.333 0.00 0.00 41.07 3.18
2370 3492 5.915196 GCTTCAGATCACTGTTTTGTAAACC 59.085 40.000 0.00 0.00 43.81 3.27
2423 3545 8.255206 ACACCAATACTTTCTGTATCGATGTTA 58.745 33.333 8.54 0.00 40.69 2.41
2427 3571 6.873997 TGACACCAATACTTTCTGTATCGAT 58.126 36.000 2.16 2.16 40.69 3.59
2429 3573 8.703336 CATATGACACCAATACTTTCTGTATCG 58.297 37.037 0.00 0.00 40.69 2.92
2508 3731 3.934068 TGACTTGACCGATTAGGGTTTC 58.066 45.455 0.00 0.00 46.96 2.78
2537 3760 4.494350 TCGGTATCTTAACTATGACGCC 57.506 45.455 0.00 0.00 0.00 5.68
2553 3776 7.624360 ATGCTAAATCAAACAGAAATCGGTA 57.376 32.000 0.00 0.00 0.00 4.02
2696 4005 5.147162 CGTTGGCTGAATTAGAACAGAAAC 58.853 41.667 0.00 0.00 36.38 2.78
2788 4105 3.507622 AGTTCTCATGTCATCGTGTCAGA 59.492 43.478 0.00 0.00 32.85 3.27
2789 4106 3.842820 AGTTCTCATGTCATCGTGTCAG 58.157 45.455 0.00 0.00 32.85 3.51
2790 4107 3.255642 TGAGTTCTCATGTCATCGTGTCA 59.744 43.478 0.00 0.00 32.85 3.58
2968 6166 2.172534 CTGAAGCAGCAGCCAGAAG 58.827 57.895 0.00 0.00 43.56 2.85
3019 6217 3.753272 TGGAGTGCTCAATTAACTTCTGC 59.247 43.478 1.41 0.00 0.00 4.26
3023 6243 7.502561 AGTTAAAGTGGAGTGCTCAATTAACTT 59.497 33.333 15.41 9.35 0.00 2.66
3040 6260 4.097892 ACCTGAAAAGGCACAGTTAAAGTG 59.902 41.667 5.23 5.23 39.92 3.16
3113 6378 7.354751 TCTTTTACAACAGCCTAAACCAAAT 57.645 32.000 0.00 0.00 0.00 2.32
3114 6379 6.777213 TCTTTTACAACAGCCTAAACCAAA 57.223 33.333 0.00 0.00 0.00 3.28
3115 6380 6.777213 TTCTTTTACAACAGCCTAAACCAA 57.223 33.333 0.00 0.00 0.00 3.67
3116 6381 6.969993 ATTCTTTTACAACAGCCTAAACCA 57.030 33.333 0.00 0.00 0.00 3.67
3117 6382 7.430441 TCAATTCTTTTACAACAGCCTAAACC 58.570 34.615 0.00 0.00 0.00 3.27
3118 6383 8.865590 TTCAATTCTTTTACAACAGCCTAAAC 57.134 30.769 0.00 0.00 0.00 2.01
3122 6387 8.637986 TGTTATTCAATTCTTTTACAACAGCCT 58.362 29.630 0.00 0.00 0.00 4.58
3123 6388 8.810652 TGTTATTCAATTCTTTTACAACAGCC 57.189 30.769 0.00 0.00 0.00 4.85
3138 6403 9.775854 TCCAATTTTGTTCACATGTTATTCAAT 57.224 25.926 0.00 0.00 0.00 2.57
3139 6404 9.775854 ATCCAATTTTGTTCACATGTTATTCAA 57.224 25.926 0.00 0.00 0.00 2.69
3140 6405 9.421806 GATCCAATTTTGTTCACATGTTATTCA 57.578 29.630 0.00 0.00 0.00 2.57
3141 6406 8.872845 GGATCCAATTTTGTTCACATGTTATTC 58.127 33.333 6.95 0.00 0.00 1.75
3142 6407 7.823799 GGGATCCAATTTTGTTCACATGTTATT 59.176 33.333 15.23 0.00 0.00 1.40
3143 6408 7.038445 TGGGATCCAATTTTGTTCACATGTTAT 60.038 33.333 15.23 0.00 0.00 1.89
3144 6409 6.268617 TGGGATCCAATTTTGTTCACATGTTA 59.731 34.615 15.23 0.00 0.00 2.41
3145 6410 5.071519 TGGGATCCAATTTTGTTCACATGTT 59.928 36.000 15.23 0.00 0.00 2.71
3146 6411 4.592351 TGGGATCCAATTTTGTTCACATGT 59.408 37.500 15.23 0.00 0.00 3.21
3147 6412 4.931002 GTGGGATCCAATTTTGTTCACATG 59.069 41.667 15.23 0.00 34.18 3.21
3148 6413 4.592351 TGTGGGATCCAATTTTGTTCACAT 59.408 37.500 15.23 0.00 34.18 3.21
3149 6414 3.963374 TGTGGGATCCAATTTTGTTCACA 59.037 39.130 15.23 11.93 34.18 3.58
3150 6415 4.599047 TGTGGGATCCAATTTTGTTCAC 57.401 40.909 15.23 9.38 34.18 3.18
3151 6416 4.406972 TGTTGTGGGATCCAATTTTGTTCA 59.593 37.500 15.23 0.00 34.18 3.18
3152 6417 4.749598 GTGTTGTGGGATCCAATTTTGTTC 59.250 41.667 15.23 0.00 34.18 3.18
3153 6418 4.444164 GGTGTTGTGGGATCCAATTTTGTT 60.444 41.667 15.23 0.00 34.18 2.83
3154 6419 3.070878 GGTGTTGTGGGATCCAATTTTGT 59.929 43.478 15.23 0.00 34.18 2.83
3155 6420 3.663025 GGTGTTGTGGGATCCAATTTTG 58.337 45.455 15.23 0.00 34.18 2.44
3163 6437 2.754946 TCTTACGGTGTTGTGGGATC 57.245 50.000 0.00 0.00 0.00 3.36
3171 6445 6.589139 GCAGAAACTAGTATTCTTACGGTGTT 59.411 38.462 14.04 0.00 34.99 3.32
3257 6539 4.952957 TGAGAGACTCTAAAGGACCTGATG 59.047 45.833 4.57 0.00 0.00 3.07
3305 6587 1.203300 TCCACCTGAGAATCCACCTGA 60.203 52.381 0.00 0.00 0.00 3.86
3306 6588 1.065854 GTCCACCTGAGAATCCACCTG 60.066 57.143 0.00 0.00 0.00 4.00
3307 6589 1.280457 GTCCACCTGAGAATCCACCT 58.720 55.000 0.00 0.00 0.00 4.00
3308 6590 0.108138 CGTCCACCTGAGAATCCACC 60.108 60.000 0.00 0.00 0.00 4.61
3309 6591 0.741221 GCGTCCACCTGAGAATCCAC 60.741 60.000 0.00 0.00 0.00 4.02
3327 6615 1.130561 GTTGATTTGTCTAGCCGTGGC 59.869 52.381 1.67 1.67 42.33 5.01
3353 6641 1.005037 CCGTGCTGTGCCTGTAAGA 60.005 57.895 0.00 0.00 34.07 2.10
3380 6668 6.770746 TGCGAAATAGTACTAGTTTCCTCT 57.229 37.500 16.11 0.00 0.00 3.69
3381 6669 7.823149 TTTGCGAAATAGTACTAGTTTCCTC 57.177 36.000 16.11 13.40 0.00 3.71
3382 6670 8.611654 TTTTTGCGAAATAGTACTAGTTTCCT 57.388 30.769 16.11 0.00 0.00 3.36
3408 6696 6.315144 GTGGCCTTTGTGTGTTCTTAATTTTT 59.685 34.615 3.32 0.00 0.00 1.94
3409 6697 5.815222 GTGGCCTTTGTGTGTTCTTAATTTT 59.185 36.000 3.32 0.00 0.00 1.82
3410 6698 5.356426 GTGGCCTTTGTGTGTTCTTAATTT 58.644 37.500 3.32 0.00 0.00 1.82
3411 6699 4.202212 GGTGGCCTTTGTGTGTTCTTAATT 60.202 41.667 3.32 0.00 0.00 1.40
3412 6700 3.320826 GGTGGCCTTTGTGTGTTCTTAAT 59.679 43.478 3.32 0.00 0.00 1.40
3413 6701 2.691011 GGTGGCCTTTGTGTGTTCTTAA 59.309 45.455 3.32 0.00 0.00 1.85
3414 6702 2.303175 GGTGGCCTTTGTGTGTTCTTA 58.697 47.619 3.32 0.00 0.00 2.10
3415 6703 1.111277 GGTGGCCTTTGTGTGTTCTT 58.889 50.000 3.32 0.00 0.00 2.52
3441 6729 3.356814 CCCATTGAAACGAGGGGTT 57.643 52.632 0.00 0.00 41.76 4.11
3461 6749 5.382618 ACTGAATAAGCAAAAGAAGGCAG 57.617 39.130 0.00 0.00 0.00 4.85
3507 6796 4.825085 GGAGGACCAAATGTGTAGTTTTCA 59.175 41.667 0.00 0.00 35.97 2.69
3530 6819 4.424061 TCTCAAGTTCCGATGCAAATTG 57.576 40.909 0.00 0.00 31.57 2.32
3682 6992 5.818136 AATTAGATGCTTTCTTTGCGCTA 57.182 34.783 9.73 0.00 35.79 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.