Multiple sequence alignment - TraesCS7D01G109600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G109600 chr7D 100.000 4459 0 0 1 4459 66349302 66344844 0.000000e+00 8235.0
1 TraesCS7D01G109600 chr7D 84.349 1214 134 28 812 1972 69041401 69042611 0.000000e+00 1138.0
2 TraesCS7D01G109600 chr7D 88.133 691 57 9 938 1603 65940358 65939668 0.000000e+00 798.0
3 TraesCS7D01G109600 chr7D 86.824 721 51 19 924 1603 66105603 66104886 0.000000e+00 765.0
4 TraesCS7D01G109600 chr7D 83.951 648 62 23 2982 3599 548817379 548816744 2.310000e-162 582.0
5 TraesCS7D01G109600 chr7D 82.060 563 92 4 1047 1603 66508480 66507921 5.220000e-129 472.0
6 TraesCS7D01G109600 chr7D 82.435 501 63 14 3113 3600 69043442 69043930 8.920000e-112 414.0
7 TraesCS7D01G109600 chr7D 85.934 391 45 5 3217 3599 68903388 68903776 4.150000e-110 409.0
8 TraesCS7D01G109600 chr7D 85.901 383 29 15 2329 2709 69042973 69043332 7.000000e-103 385.0
9 TraesCS7D01G109600 chr7D 83.249 394 44 14 3217 3600 83600643 83600262 4.270000e-90 342.0
10 TraesCS7D01G109600 chr7D 83.740 369 46 3 1616 1972 65939601 65939235 1.990000e-88 337.0
11 TraesCS7D01G109600 chr7D 79.317 556 56 32 2989 3497 69020509 69021052 7.150000e-88 335.0
12 TraesCS7D01G109600 chr7D 84.412 340 44 5 1640 1972 66366671 66366334 4.300000e-85 326.0
13 TraesCS7D01G109600 chr7D 81.848 303 55 0 1706 2008 83601763 83601461 5.720000e-64 255.0
14 TraesCS7D01G109600 chr7D 83.824 272 24 7 2712 2963 68903182 68903453 1.600000e-59 241.0
15 TraesCS7D01G109600 chr7D 81.271 299 45 8 361 651 373244018 373244313 9.650000e-57 231.0
16 TraesCS7D01G109600 chr7D 88.298 188 17 4 2781 2965 66546599 66546414 2.090000e-53 220.0
17 TraesCS7D01G109600 chr7D 88.649 185 12 4 2781 2965 68909367 68909542 2.700000e-52 217.0
18 TraesCS7D01G109600 chr7D 81.063 301 30 12 1849 2148 66103437 66103163 9.710000e-52 215.0
19 TraesCS7D01G109600 chr7D 84.163 221 20 9 2987 3200 548811539 548811327 2.720000e-47 200.0
20 TraesCS7D01G109600 chr7D 95.283 106 5 0 2781 2886 65938264 65938159 7.670000e-38 169.0
21 TraesCS7D01G109600 chr7D 88.112 143 9 4 1 142 66105803 66105668 3.570000e-36 163.0
22 TraesCS7D01G109600 chr7D 82.967 182 23 8 1640 1819 66104740 66104565 1.660000e-34 158.0
23 TraesCS7D01G109600 chr7D 85.621 153 11 5 643 795 69031211 69031352 2.780000e-32 150.0
24 TraesCS7D01G109600 chr7D 80.368 163 14 10 2433 2577 548817309 548817147 1.700000e-19 108.0
25 TraesCS7D01G109600 chr7D 90.000 80 8 0 2885 2964 65937781 65937702 2.190000e-18 104.0
26 TraesCS7D01G109600 chr7D 89.024 82 6 3 792 870 69041350 69041431 1.020000e-16 99.0
27 TraesCS7D01G109600 chr7D 79.688 128 17 6 2189 2310 83601409 83601285 2.860000e-12 84.2
28 TraesCS7D01G109600 chr7D 77.564 156 13 11 2433 2572 548811476 548811327 1.720000e-09 75.0
29 TraesCS7D01G109600 chr7D 100.000 29 0 0 2165 2193 66346850 66346822 2.000000e-03 54.7
30 TraesCS7D01G109600 chr7D 100.000 29 0 0 2453 2481 66347138 66347110 2.000000e-03 54.7
31 TraesCS7D01G109600 chr7A 84.430 2203 198 59 1 2108 70768368 70766216 0.000000e+00 2034.0
32 TraesCS7D01G109600 chr7A 88.889 1251 48 26 2705 3901 70765999 70764786 0.000000e+00 1456.0
33 TraesCS7D01G109600 chr7A 84.993 673 77 15 857 1507 70737293 70736623 0.000000e+00 662.0
34 TraesCS7D01G109600 chr7A 84.157 587 63 19 812 1375 74684482 74685061 3.920000e-150 542.0
35 TraesCS7D01G109600 chr7A 83.196 607 61 24 2982 3558 634361966 634361371 6.610000e-143 518.0
36 TraesCS7D01G109600 chr7A 84.130 523 51 21 3092 3600 85197447 85196943 1.120000e-130 477.0
37 TraesCS7D01G109600 chr7A 82.739 533 86 1 1077 1603 70238030 70237498 1.880000e-128 470.0
38 TraesCS7D01G109600 chr7A 82.578 574 58 14 848 1381 70754457 70753886 6.750000e-128 468.0
39 TraesCS7D01G109600 chr7A 80.628 573 91 11 1047 1603 70898532 70897964 4.120000e-115 425.0
40 TraesCS7D01G109600 chr7A 88.140 371 23 8 3997 4359 70764747 70764390 5.330000e-114 422.0
41 TraesCS7D01G109600 chr7A 82.669 502 61 10 3113 3600 74686721 74687210 5.330000e-114 422.0
42 TraesCS7D01G109600 chr7A 79.193 644 83 27 2987 3600 70734954 70734332 2.500000e-107 399.0
43 TraesCS7D01G109600 chr7A 83.122 474 35 17 2236 2707 653102699 653102269 1.500000e-104 390.0
44 TraesCS7D01G109600 chr7A 82.983 476 36 17 2236 2709 184067478 184067046 5.410000e-104 388.0
45 TraesCS7D01G109600 chr7A 84.507 355 46 5 1640 1987 74673645 74673997 4.270000e-90 342.0
46 TraesCS7D01G109600 chr7A 83.832 334 51 3 1640 1972 74685251 74685582 9.310000e-82 315.0
47 TraesCS7D01G109600 chr7A 84.887 311 45 2 1662 1972 70735551 70735243 3.350000e-81 313.0
48 TraesCS7D01G109600 chr7A 84.142 309 41 5 3293 3595 74743240 74743546 4.360000e-75 292.0
49 TraesCS7D01G109600 chr7A 80.965 373 57 10 1648 2008 74593202 74593572 2.630000e-72 283.0
50 TraesCS7D01G109600 chr7A 82.534 292 29 9 3209 3490 74674470 74674749 2.070000e-58 237.0
51 TraesCS7D01G109600 chr7A 86.266 233 15 7 644 870 74684290 74684511 2.070000e-58 237.0
52 TraesCS7D01G109600 chr7A 82.772 267 30 7 2712 2964 74593985 74594249 1.610000e-54 224.0
53 TraesCS7D01G109600 chr7A 85.946 185 20 2 2781 2959 47050875 47051059 4.550000e-45 193.0
54 TraesCS7D01G109600 chr7A 85.955 178 20 5 1612 1787 70776634 70776460 7.620000e-43 185.0
55 TraesCS7D01G109600 chr7A 79.487 312 23 11 2236 2547 10314399 10314669 2.740000e-42 183.0
56 TraesCS7D01G109600 chr7A 84.615 182 17 8 3027 3200 634348018 634347840 2.130000e-38 171.0
57 TraesCS7D01G109600 chr7A 93.043 115 8 0 3092 3206 70774508 70774394 7.670000e-38 169.0
58 TraesCS7D01G109600 chr7A 86.719 128 16 1 368 495 419932748 419932622 1.670000e-29 141.0
59 TraesCS7D01G109600 chr7A 78.392 199 25 9 2389 2577 70766018 70765828 3.650000e-21 113.0
60 TraesCS7D01G109600 chr7A 80.368 163 14 11 2433 2577 634361895 634361733 1.700000e-19 108.0
61 TraesCS7D01G109600 chr7A 85.938 64 7 2 2412 2474 85197532 85197470 2.880000e-07 67.6
62 TraesCS7D01G109600 chr7A 100.000 29 0 0 2165 2193 70765955 70765927 2.000000e-03 54.7
63 TraesCS7D01G109600 chrUn 82.609 1403 152 43 643 1972 305653990 305655373 0.000000e+00 1155.0
64 TraesCS7D01G109600 chrUn 84.194 968 128 16 1027 1972 308151910 308150946 0.000000e+00 917.0
65 TraesCS7D01G109600 chrUn 84.194 968 128 16 1027 1972 308156018 308155054 0.000000e+00 917.0
66 TraesCS7D01G109600 chrUn 83.193 476 35 21 2236 2709 32229725 32229293 1.160000e-105 394.0
67 TraesCS7D01G109600 chrUn 86.325 234 18 7 2987 3206 84530129 84530362 4.460000e-60 243.0
68 TraesCS7D01G109600 chrUn 85.903 227 21 5 3209 3424 84530399 84530625 9.650000e-57 231.0
69 TraesCS7D01G109600 chr7B 83.306 1210 148 32 808 1972 10880803 10882003 0.000000e+00 1066.0
70 TraesCS7D01G109600 chr7B 83.622 751 55 26 643 1341 10891661 10892395 1.050000e-180 643.0
71 TraesCS7D01G109600 chr7B 81.902 652 102 10 1334 1972 10893589 10894237 1.830000e-148 536.0
72 TraesCS7D01G109600 chr7B 85.465 516 48 10 3098 3599 592417421 592416919 3.080000e-141 512.0
73 TraesCS7D01G109600 chr7B 80.110 543 55 25 2990 3490 10640764 10641295 5.490000e-94 355.0
74 TraesCS7D01G109600 chr7B 81.696 448 56 11 3167 3600 10895225 10895660 2.550000e-92 350.0
75 TraesCS7D01G109600 chr7B 80.697 373 57 11 1649 2008 10068742 10069112 4.390000e-70 276.0
76 TraesCS7D01G109600 chr7B 88.830 188 16 4 2781 2965 8447177 8446992 4.490000e-55 226.0
77 TraesCS7D01G109600 chr7B 84.762 210 23 6 3004 3206 592426078 592425871 7.560000e-48 202.0
78 TraesCS7D01G109600 chr7B 76.965 369 58 15 1658 2008 592426578 592426219 7.620000e-43 185.0
79 TraesCS7D01G109600 chr7B 85.821 134 8 4 857 979 10819944 10820077 1.010000e-26 132.0
80 TraesCS7D01G109600 chr7B 89.130 92 10 0 420 511 694307291 694307382 1.010000e-21 115.0
81 TraesCS7D01G109600 chr7B 87.640 89 11 0 2876 2964 10895260 10895348 2.190000e-18 104.0
82 TraesCS7D01G109600 chr7B 96.610 59 2 0 792 850 10880753 10880811 1.020000e-16 99.0
83 TraesCS7D01G109600 chr7B 90.698 43 4 0 2189 2231 32897392 32897350 1.730000e-04 58.4
84 TraesCS7D01G109600 chr6A 82.983 476 36 19 2236 2709 407504850 407505282 5.410000e-104 388.0
85 TraesCS7D01G109600 chr6A 82.983 476 36 16 2236 2709 527378448 527378880 5.410000e-104 388.0
86 TraesCS7D01G109600 chr6A 79.322 295 43 13 370 651 21569603 21569314 1.640000e-44 191.0
87 TraesCS7D01G109600 chr3A 82.983 476 36 19 2236 2709 2081333 2080901 5.410000e-104 388.0
88 TraesCS7D01G109600 chr3A 82.983 476 36 20 2236 2709 3018809 3018377 5.410000e-104 388.0
89 TraesCS7D01G109600 chr3A 82.353 476 39 20 2236 2709 4057604 4057172 5.450000e-99 372.0
90 TraesCS7D01G109600 chr3A 90.816 98 9 0 4362 4459 712586700 712586603 1.010000e-26 132.0
91 TraesCS7D01G109600 chr1A 82.983 476 36 19 2236 2709 8508035 8508467 5.410000e-104 388.0
92 TraesCS7D01G109600 chr1A 82.983 476 36 17 2236 2709 8566478 8566910 5.410000e-104 388.0
93 TraesCS7D01G109600 chr1A 82.983 476 36 19 2236 2709 103031061 103030629 5.410000e-104 388.0
94 TraesCS7D01G109600 chr1A 82.983 476 35 23 2236 2709 539260601 539261032 5.410000e-104 388.0
95 TraesCS7D01G109600 chr2A 91.781 219 14 3 2493 2709 541032304 541032088 7.250000e-78 302.0
96 TraesCS7D01G109600 chr4A 79.567 416 55 12 361 747 692086573 692086987 2.040000e-68 270.0
97 TraesCS7D01G109600 chr4A 85.106 188 18 5 2784 2964 656493319 656493135 2.740000e-42 183.0
98 TraesCS7D01G109600 chr4A 91.228 114 10 0 2781 2894 656743691 656743804 5.970000e-34 156.0
99 TraesCS7D01G109600 chr4A 79.130 230 26 12 2337 2546 656758095 656758322 6.010000e-29 139.0
100 TraesCS7D01G109600 chr4A 90.816 98 9 0 4362 4459 143430193 143430096 1.010000e-26 132.0
101 TraesCS7D01G109600 chr4A 90.816 98 9 0 4362 4459 669002398 669002495 1.010000e-26 132.0
102 TraesCS7D01G109600 chr4D 79.376 417 50 13 361 747 20454500 20454910 1.230000e-65 261.0
103 TraesCS7D01G109600 chr4D 100.000 28 0 0 4215 4242 505308936 505308909 8.000000e-03 52.8
104 TraesCS7D01G109600 chr6B 80.539 334 62 3 1640 1972 360922809 360922478 2.060000e-63 254.0
105 TraesCS7D01G109600 chr6B 85.714 63 6 3 4007 4067 136451622 136451561 3.720000e-06 63.9
106 TraesCS7D01G109600 chr4B 77.427 412 63 12 361 744 76274112 76274521 7.510000e-53 219.0
107 TraesCS7D01G109600 chr4B 84.656 189 26 3 369 556 369514891 369514705 7.620000e-43 185.0
108 TraesCS7D01G109600 chr3D 91.026 156 14 0 167 322 562924146 562923991 1.260000e-50 211.0
109 TraesCS7D01G109600 chr3D 91.026 156 14 0 167 322 563058782 563058627 1.260000e-50 211.0
110 TraesCS7D01G109600 chr3D 90.385 156 15 0 167 322 563142107 563141952 5.850000e-49 206.0
111 TraesCS7D01G109600 chr3D 86.705 173 21 2 150 322 93254355 93254525 1.640000e-44 191.0
112 TraesCS7D01G109600 chr3D 90.816 98 9 0 4362 4459 601144071 601144168 1.010000e-26 132.0
113 TraesCS7D01G109600 chr5D 88.068 176 19 2 149 322 35562238 35562063 1.630000e-49 207.0
114 TraesCS7D01G109600 chr5D 87.429 175 20 2 148 322 391906910 391906738 2.720000e-47 200.0
115 TraesCS7D01G109600 chr5D 77.444 266 42 11 356 616 932001 932253 4.650000e-30 143.0
116 TraesCS7D01G109600 chr5B 90.385 156 15 0 167 322 530653398 530653553 5.850000e-49 206.0
117 TraesCS7D01G109600 chr5B 82.741 197 31 3 356 551 219845 219651 5.930000e-39 172.0
118 TraesCS7D01G109600 chr2B 87.135 171 20 2 152 322 690213025 690213193 4.550000e-45 193.0
119 TraesCS7D01G109600 chr2B 85.350 157 23 0 166 322 36593834 36593990 3.570000e-36 163.0
120 TraesCS7D01G109600 chr2B 82.292 192 13 10 2376 2546 76515985 76515794 3.590000e-31 147.0
121 TraesCS7D01G109600 chr2B 89.831 59 5 1 2432 2490 135796889 135796946 1.720000e-09 75.0
122 TraesCS7D01G109600 chr6D 93.878 98 6 0 4362 4459 393294879 393294782 9.990000e-32 148.0
123 TraesCS7D01G109600 chr3B 93.878 98 6 0 4362 4459 40145515 40145418 9.990000e-32 148.0
124 TraesCS7D01G109600 chr3B 93.878 98 6 0 4362 4459 40147026 40146929 9.990000e-32 148.0
125 TraesCS7D01G109600 chr3B 93.878 98 6 0 4362 4459 40156007 40155910 9.990000e-32 148.0
126 TraesCS7D01G109600 chr3B 93.878 98 6 0 4362 4459 40158148 40158051 9.990000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G109600 chr7D 66344844 66349302 4458 True 2781.466667 8235 100.000000 1 4459 3 chr7D.!!$R6 4458
1 TraesCS7D01G109600 chr7D 69041350 69043930 2580 False 509.000000 1138 85.427250 792 3600 4 chr7D.!!$F6 2808
2 TraesCS7D01G109600 chr7D 66507921 66508480 559 True 472.000000 472 82.060000 1047 1603 1 chr7D.!!$R2 556
3 TraesCS7D01G109600 chr7D 65937702 65940358 2656 True 352.000000 798 89.289000 938 2964 4 chr7D.!!$R4 2026
4 TraesCS7D01G109600 chr7D 548816744 548817379 635 True 345.000000 582 82.159500 2433 3599 2 chr7D.!!$R9 1166
5 TraesCS7D01G109600 chr7D 69020509 69021052 543 False 335.000000 335 79.317000 2989 3497 1 chr7D.!!$F2 508
6 TraesCS7D01G109600 chr7D 66103163 66105803 2640 True 325.250000 765 84.741500 1 2148 4 chr7D.!!$R5 2147
7 TraesCS7D01G109600 chr7D 68903182 68903776 594 False 325.000000 409 84.879000 2712 3599 2 chr7D.!!$F5 887
8 TraesCS7D01G109600 chr7D 83600262 83601763 1501 True 227.066667 342 81.595000 1706 3600 3 chr7D.!!$R7 1894
9 TraesCS7D01G109600 chr7A 70764390 70768368 3978 True 815.940000 2034 87.970200 1 4359 5 chr7A.!!$R9 4358
10 TraesCS7D01G109600 chr7A 70237498 70238030 532 True 470.000000 470 82.739000 1077 1603 1 chr7A.!!$R1 526
11 TraesCS7D01G109600 chr7A 70753886 70754457 571 True 468.000000 468 82.578000 848 1381 1 chr7A.!!$R2 533
12 TraesCS7D01G109600 chr7A 70734332 70737293 2961 True 458.000000 662 83.024333 857 3600 3 chr7A.!!$R8 2743
13 TraesCS7D01G109600 chr7A 70897964 70898532 568 True 425.000000 425 80.628000 1047 1603 1 chr7A.!!$R3 556
14 TraesCS7D01G109600 chr7A 74684290 74687210 2920 False 379.000000 542 84.231000 644 3600 4 chr7A.!!$F6 2956
15 TraesCS7D01G109600 chr7A 634361371 634361966 595 True 313.000000 518 81.782000 2433 3558 2 chr7A.!!$R12 1125
16 TraesCS7D01G109600 chr7A 74673645 74674749 1104 False 289.500000 342 83.520500 1640 3490 2 chr7A.!!$F5 1850
17 TraesCS7D01G109600 chr7A 85196943 85197532 589 True 272.300000 477 85.034000 2412 3600 2 chr7A.!!$R11 1188
18 TraesCS7D01G109600 chr7A 74593202 74594249 1047 False 253.500000 283 81.868500 1648 2964 2 chr7A.!!$F4 1316
19 TraesCS7D01G109600 chrUn 305653990 305655373 1383 False 1155.000000 1155 82.609000 643 1972 1 chrUn.!!$F1 1329
20 TraesCS7D01G109600 chrUn 308150946 308156018 5072 True 917.000000 917 84.194000 1027 1972 2 chrUn.!!$R2 945
21 TraesCS7D01G109600 chr7B 10880753 10882003 1250 False 582.500000 1066 89.958000 792 1972 2 chr7B.!!$F5 1180
22 TraesCS7D01G109600 chr7B 592416919 592417421 502 True 512.000000 512 85.465000 3098 3599 1 chr7B.!!$R3 501
23 TraesCS7D01G109600 chr7B 10891661 10895660 3999 False 408.250000 643 83.715000 643 3600 4 chr7B.!!$F6 2957
24 TraesCS7D01G109600 chr7B 10640764 10641295 531 False 355.000000 355 80.110000 2990 3490 1 chr7B.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 642 0.036765 TCTAACCACATGACACCGCC 60.037 55.0 0.00 0.0 0.00 6.13 F
606 644 0.108774 TAACCACATGACACCGCCAA 59.891 50.0 0.00 0.0 0.00 4.52 F
890 997 0.112995 TGGGCTGGATCAAACTTGCT 59.887 50.0 0.00 0.0 0.00 3.91 F
981 1101 0.600782 TAACCGTCTCAACCAACCGC 60.601 55.0 0.00 0.0 0.00 5.68 F
1349 2753 0.676782 AGCGCAACTACAACCATCCC 60.677 55.0 11.47 0.0 0.00 3.85 F
2239 6353 0.827507 ACCCGCCAGTGCTTGAAAAT 60.828 50.0 0.00 0.0 34.43 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 5669 0.393077 AGTTTCAGACTCCACCGGTG 59.607 55.000 28.26 28.26 31.20 4.94 R
2420 6665 3.058914 ACGAACAGTAGCATCAAAAGCAC 60.059 43.478 0.00 0.00 0.00 4.40 R
2781 7147 1.930251 AGCTGAACTAGGCAGACTGA 58.070 50.000 16.34 0.00 35.39 3.41 R
2785 7151 1.970640 TGTGAAGCTGAACTAGGCAGA 59.029 47.619 16.34 0.00 35.39 4.26 R
2787 7153 1.970640 TCTGTGAAGCTGAACTAGGCA 59.029 47.619 0.00 0.00 0.00 4.75 R
3901 9163 0.462789 CGGCGGAGGGTTAAGTACAT 59.537 55.000 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.475280 ACTGCATGAATCATGTGGCAC 59.525 47.619 22.50 11.55 43.10 5.01
152 159 4.230745 ACAGTGTTGTGGAAGGTTAGTT 57.769 40.909 0.00 0.00 35.83 2.24
153 160 4.196971 ACAGTGTTGTGGAAGGTTAGTTC 58.803 43.478 0.00 0.00 35.83 3.01
157 164 6.540914 CAGTGTTGTGGAAGGTTAGTTCTTTA 59.459 38.462 0.00 0.00 0.00 1.85
158 165 7.066525 CAGTGTTGTGGAAGGTTAGTTCTTTAA 59.933 37.037 0.00 0.00 0.00 1.52
159 166 7.612633 AGTGTTGTGGAAGGTTAGTTCTTTAAA 59.387 33.333 0.00 0.00 0.00 1.52
161 168 8.804204 TGTTGTGGAAGGTTAGTTCTTTAAAAA 58.196 29.630 0.00 0.00 0.00 1.94
287 297 9.750125 ACAATAAAATCTCTTGAAAACACCTTC 57.250 29.630 0.00 0.00 0.00 3.46
291 301 7.645058 AAATCTCTTGAAAACACCTTCTTCA 57.355 32.000 0.00 0.00 0.00 3.02
300 310 1.081892 CACCTTCTTCACGGCATCAG 58.918 55.000 0.00 0.00 0.00 2.90
301 311 0.976641 ACCTTCTTCACGGCATCAGA 59.023 50.000 0.00 0.00 0.00 3.27
304 314 2.266554 CTTCTTCACGGCATCAGACTC 58.733 52.381 0.00 0.00 0.00 3.36
309 319 0.390866 CACGGCATCAGACTCTGCTT 60.391 55.000 0.62 0.00 38.45 3.91
313 323 2.008329 GGCATCAGACTCTGCTTGAAG 58.992 52.381 0.62 0.00 38.45 3.02
316 326 3.750130 GCATCAGACTCTGCTTGAAGAAA 59.250 43.478 0.00 0.00 35.49 2.52
321 331 6.393990 TCAGACTCTGCTTGAAGAAATACTC 58.606 40.000 0.00 0.00 0.00 2.59
322 332 6.210385 TCAGACTCTGCTTGAAGAAATACTCT 59.790 38.462 0.00 0.00 35.13 3.24
323 333 6.310956 CAGACTCTGCTTGAAGAAATACTCTG 59.689 42.308 0.00 0.00 33.37 3.35
324 334 4.934602 ACTCTGCTTGAAGAAATACTCTGC 59.065 41.667 0.00 0.00 33.37 4.26
327 337 4.645535 TGCTTGAAGAAATACTCTGCAGT 58.354 39.130 14.67 0.00 41.09 4.40
328 338 5.065914 TGCTTGAAGAAATACTCTGCAGTT 58.934 37.500 14.67 4.66 41.09 3.16
329 339 6.230472 TGCTTGAAGAAATACTCTGCAGTTA 58.770 36.000 14.67 6.94 41.09 2.24
330 340 6.369890 TGCTTGAAGAAATACTCTGCAGTTAG 59.630 38.462 14.67 7.28 41.09 2.34
331 341 6.591834 GCTTGAAGAAATACTCTGCAGTTAGA 59.408 38.462 14.67 0.00 41.09 2.10
332 342 7.412455 GCTTGAAGAAATACTCTGCAGTTAGAC 60.412 40.741 14.67 1.20 41.09 2.59
333 343 7.233389 TGAAGAAATACTCTGCAGTTAGACT 57.767 36.000 14.67 3.49 34.42 3.24
334 344 7.093354 TGAAGAAATACTCTGCAGTTAGACTG 58.907 38.462 14.67 3.77 40.52 3.51
335 345 5.971763 AGAAATACTCTGCAGTTAGACTGG 58.028 41.667 14.67 0.00 46.01 4.00
360 391 6.223852 AGTAACGATGTTGTCACTCTTTCAT 58.776 36.000 0.00 0.00 0.00 2.57
366 397 4.780815 TGTTGTCACTCTTTCATGAAGGT 58.219 39.130 16.29 10.35 35.98 3.50
367 398 4.576053 TGTTGTCACTCTTTCATGAAGGTG 59.424 41.667 21.60 21.60 37.63 4.00
377 408 1.699083 TCATGAAGGTGCCTTGAGTCA 59.301 47.619 8.38 0.51 36.26 3.41
383 414 0.678048 GGTGCCTTGAGTCACCCATC 60.678 60.000 0.00 0.00 45.26 3.51
385 416 1.133181 TGCCTTGAGTCACCCATCCA 61.133 55.000 0.00 0.00 0.00 3.41
414 445 4.868172 TGGGAAGTCCTGATTGATGAAT 57.132 40.909 0.00 0.00 36.20 2.57
415 446 5.974156 TGGGAAGTCCTGATTGATGAATA 57.026 39.130 0.00 0.00 36.20 1.75
422 453 8.915057 AAGTCCTGATTGATGAATATACTTGG 57.085 34.615 0.00 0.00 0.00 3.61
450 481 4.822026 GGATGATCCCGTAGAAATGTAGG 58.178 47.826 0.00 0.00 0.00 3.18
451 482 4.283722 GGATGATCCCGTAGAAATGTAGGT 59.716 45.833 0.00 0.00 0.00 3.08
456 487 3.317149 TCCCGTAGAAATGTAGGTCATCG 59.683 47.826 0.00 0.00 35.48 3.84
464 495 6.276847 AGAAATGTAGGTCATCGAATCACTC 58.723 40.000 0.00 0.00 35.48 3.51
465 496 5.860941 AATGTAGGTCATCGAATCACTCT 57.139 39.130 0.00 0.00 35.48 3.24
466 497 6.961360 AATGTAGGTCATCGAATCACTCTA 57.039 37.500 0.00 0.00 35.48 2.43
468 499 6.561737 TGTAGGTCATCGAATCACTCTATC 57.438 41.667 0.00 0.00 0.00 2.08
473 504 6.493115 AGGTCATCGAATCACTCTATCTTCAT 59.507 38.462 0.00 0.00 0.00 2.57
478 509 7.516198 TCGAATCACTCTATCTTCATCATGA 57.484 36.000 0.00 0.00 0.00 3.07
483 514 6.675987 TCACTCTATCTTCATCATGATGTCG 58.324 40.000 30.01 22.32 39.72 4.35
495 526 7.636326 TCATCATGATGTCGATGAAAGATTTG 58.364 34.615 30.01 5.26 43.78 2.32
498 529 5.801350 TGATGTCGATGAAAGATTTGACC 57.199 39.130 0.00 0.00 0.00 4.02
501 532 5.152623 TGTCGATGAAAGATTTGACCTCT 57.847 39.130 0.00 0.00 0.00 3.69
503 534 6.100004 TGTCGATGAAAGATTTGACCTCTAC 58.900 40.000 0.00 0.00 0.00 2.59
515 546 7.821846 AGATTTGACCTCTACAAAGAATCAGAC 59.178 37.037 0.00 0.00 39.90 3.51
519 550 4.187694 CCTCTACAAAGAATCAGACCAGC 58.812 47.826 0.00 0.00 0.00 4.85
549 581 9.463443 AAAAGCTTGACACAACAATATAAACTC 57.537 29.630 0.00 0.00 0.00 3.01
592 630 5.531287 GCCAGAAAAGAAAACTCTCTAACCA 59.469 40.000 0.00 0.00 0.00 3.67
593 631 6.513556 GCCAGAAAAGAAAACTCTCTAACCAC 60.514 42.308 0.00 0.00 0.00 4.16
597 635 7.993183 AGAAAAGAAAACTCTCTAACCACATGA 59.007 33.333 0.00 0.00 0.00 3.07
602 640 2.231478 ACTCTCTAACCACATGACACCG 59.769 50.000 0.00 0.00 0.00 4.94
604 642 0.036765 TCTAACCACATGACACCGCC 60.037 55.000 0.00 0.00 0.00 6.13
605 643 0.321210 CTAACCACATGACACCGCCA 60.321 55.000 0.00 0.00 0.00 5.69
606 644 0.108774 TAACCACATGACACCGCCAA 59.891 50.000 0.00 0.00 0.00 4.52
660 718 6.596888 CCATGAAGAACATAGAGCTCTTGAAA 59.403 38.462 23.84 3.49 37.46 2.69
687 745 3.314331 CCCCACACCTCTCAGCGT 61.314 66.667 0.00 0.00 0.00 5.07
694 752 2.164422 CACACCTCTCAGCGTCAAGATA 59.836 50.000 0.00 0.00 0.00 1.98
695 753 2.425312 ACACCTCTCAGCGTCAAGATAG 59.575 50.000 0.00 0.00 0.00 2.08
718 776 2.783288 CGGAGGCGAGGGACCTTAC 61.783 68.421 0.00 0.00 37.77 2.34
729 787 2.826725 AGGGACCTTACTTTCTCAGACG 59.173 50.000 0.00 0.00 0.00 4.18
846 949 5.823045 AGGGATTGTGGACGATTAGATTTTC 59.177 40.000 0.00 0.00 0.00 2.29
850 953 8.889717 GGATTGTGGACGATTAGATTTTCTTTA 58.110 33.333 0.00 0.00 0.00 1.85
863 966 6.140377 AGATTTTCTTTAAGGGGTTGTGGAA 58.860 36.000 0.00 0.00 0.00 3.53
890 997 0.112995 TGGGCTGGATCAAACTTGCT 59.887 50.000 0.00 0.00 0.00 3.91
980 1100 1.142474 GTAACCGTCTCAACCAACCG 58.858 55.000 0.00 0.00 0.00 4.44
981 1101 0.600782 TAACCGTCTCAACCAACCGC 60.601 55.000 0.00 0.00 0.00 5.68
982 1102 2.030562 CCGTCTCAACCAACCGCT 59.969 61.111 0.00 0.00 0.00 5.52
983 1103 2.027625 CCGTCTCAACCAACCGCTC 61.028 63.158 0.00 0.00 0.00 5.03
984 1104 1.006102 CGTCTCAACCAACCGCTCT 60.006 57.895 0.00 0.00 0.00 4.09
1349 2753 0.676782 AGCGCAACTACAACCATCCC 60.677 55.000 11.47 0.00 0.00 3.85
2026 5588 6.149973 TCTCCTTGTCAGTTGATTGCTAATTG 59.850 38.462 0.00 0.00 0.00 2.32
2033 5595 7.331934 TGTCAGTTGATTGCTAATTGAGACTAC 59.668 37.037 0.00 0.00 0.00 2.73
2035 5597 8.749354 TCAGTTGATTGCTAATTGAGACTACTA 58.251 33.333 0.00 0.00 0.00 1.82
2041 5603 9.757227 GATTGCTAATTGAGACTACTAATCTGT 57.243 33.333 0.00 0.00 0.00 3.41
2051 5614 5.078411 ACTACTAATCTGTCTGTGCTTGG 57.922 43.478 0.00 0.00 0.00 3.61
2105 5669 7.748847 TGAACTCTGAAAAACAGTTTACTGAC 58.251 34.615 16.31 3.73 46.59 3.51
2113 5677 1.202604 ACAGTTTACTGACACCGGTGG 60.203 52.381 36.47 22.10 46.59 4.61
2135 5699 7.362142 GGTGGAGTCTGAAACTTTTGATAATCC 60.362 40.741 0.00 0.00 38.74 3.01
2142 5706 8.625651 TCTGAAACTTTTGATAATCCGTTTCAA 58.374 29.630 13.97 5.63 45.18 2.69
2148 5712 9.594478 ACTTTTGATAATCCGTTTCAAACTTTT 57.406 25.926 0.00 0.00 38.65 2.27
2150 5714 9.587772 TTTTGATAATCCGTTTCAAACTTTTGA 57.412 25.926 0.00 0.07 44.78 2.69
2152 5716 8.741101 TGATAATCCGTTTCAAACTTTTGATG 57.259 30.769 5.26 0.01 45.65 3.07
2153 5717 5.905480 AATCCGTTTCAAACTTTTGATGC 57.095 34.783 5.26 1.68 45.65 3.91
2154 5718 4.647424 TCCGTTTCAAACTTTTGATGCT 57.353 36.364 5.26 0.00 45.65 3.79
2155 5719 5.759506 TCCGTTTCAAACTTTTGATGCTA 57.240 34.783 5.26 0.00 45.65 3.49
2156 5720 5.516090 TCCGTTTCAAACTTTTGATGCTAC 58.484 37.500 5.26 2.29 45.65 3.58
2157 5721 5.298276 TCCGTTTCAAACTTTTGATGCTACT 59.702 36.000 5.26 0.00 45.65 2.57
2158 5722 5.399301 CCGTTTCAAACTTTTGATGCTACTG 59.601 40.000 5.26 0.00 45.65 2.74
2160 5724 6.472163 CGTTTCAAACTTTTGATGCTACTGTT 59.528 34.615 5.26 0.00 45.65 3.16
2161 5725 7.305418 CGTTTCAAACTTTTGATGCTACTGTTC 60.305 37.037 5.26 0.00 45.65 3.18
2162 5726 6.942532 TCAAACTTTTGATGCTACTGTTCT 57.057 33.333 0.07 0.00 41.88 3.01
2163 5727 7.333528 TCAAACTTTTGATGCTACTGTTCTT 57.666 32.000 0.07 0.00 41.88 2.52
2171 5791 6.732531 TGATGCTACTGTTCTTTGATTCAG 57.267 37.500 0.00 0.00 0.00 3.02
2172 5792 6.233434 TGATGCTACTGTTCTTTGATTCAGT 58.767 36.000 0.00 0.00 42.56 3.41
2175 5795 6.291377 TGCTACTGTTCTTTGATTCAGTTCT 58.709 36.000 0.00 0.00 40.77 3.01
2221 6180 5.915196 GGTTTCATTTCAGTTGAGTGCTAAC 59.085 40.000 0.00 0.00 0.00 2.34
2223 6182 4.072131 TCATTTCAGTTGAGTGCTAACCC 58.928 43.478 0.00 0.00 0.00 4.11
2227 6186 1.302192 GTTGAGTGCTAACCCGCCA 60.302 57.895 0.00 0.00 0.00 5.69
2239 6353 0.827507 ACCCGCCAGTGCTTGAAAAT 60.828 50.000 0.00 0.00 34.43 1.82
2251 6370 4.633565 GTGCTTGAAAATTTTGGGTGTTCA 59.366 37.500 8.47 0.00 0.00 3.18
2299 6431 7.979444 TTATGTGGTCTGAAACTTTTCCTAG 57.021 36.000 0.00 0.00 36.36 3.02
2319 6498 5.817816 CCTAGTGTGTTTCAGACTTTCAGTT 59.182 40.000 4.99 0.00 38.84 3.16
2320 6499 6.984474 CCTAGTGTGTTTCAGACTTTCAGTTA 59.016 38.462 4.99 0.00 38.84 2.24
2321 6500 6.910536 AGTGTGTTTCAGACTTTCAGTTAG 57.089 37.500 0.00 0.00 34.24 2.34
2322 6501 5.817816 AGTGTGTTTCAGACTTTCAGTTAGG 59.182 40.000 0.00 0.00 34.24 2.69
2323 6502 5.815740 GTGTGTTTCAGACTTTCAGTTAGGA 59.184 40.000 0.00 0.00 0.00 2.94
2324 6503 6.018669 GTGTGTTTCAGACTTTCAGTTAGGAG 60.019 42.308 0.00 0.00 0.00 3.69
2325 6504 6.049790 GTGTTTCAGACTTTCAGTTAGGAGT 58.950 40.000 0.00 0.00 0.00 3.85
2326 6505 6.018669 GTGTTTCAGACTTTCAGTTAGGAGTG 60.019 42.308 0.00 0.00 0.00 3.51
2327 6506 6.127168 TGTTTCAGACTTTCAGTTAGGAGTGA 60.127 38.462 0.00 0.00 33.44 3.41
2328 6507 6.479972 TTCAGACTTTCAGTTAGGAGTGAA 57.520 37.500 0.00 0.00 42.10 3.18
2329 6508 6.090483 TCAGACTTTCAGTTAGGAGTGAAG 57.910 41.667 0.00 0.00 43.93 3.02
2330 6509 5.833667 TCAGACTTTCAGTTAGGAGTGAAGA 59.166 40.000 0.00 0.00 43.93 2.87
2331 6510 5.923684 CAGACTTTCAGTTAGGAGTGAAGAC 59.076 44.000 0.00 0.00 43.93 3.01
2332 6511 5.836358 AGACTTTCAGTTAGGAGTGAAGACT 59.164 40.000 0.00 0.00 43.93 3.24
2333 6512 6.325286 AGACTTTCAGTTAGGAGTGAAGACTT 59.675 38.462 0.00 0.00 43.93 3.01
2334 6513 6.890293 ACTTTCAGTTAGGAGTGAAGACTTT 58.110 36.000 0.00 0.00 43.93 2.66
2335 6514 6.987404 ACTTTCAGTTAGGAGTGAAGACTTTC 59.013 38.462 0.00 0.00 43.93 2.62
2336 6515 6.479972 TTCAGTTAGGAGTGAAGACTTTCA 57.520 37.500 0.00 0.00 39.65 2.69
2337 6516 6.090483 TCAGTTAGGAGTGAAGACTTTCAG 57.910 41.667 0.00 0.00 43.66 3.02
2338 6517 5.598830 TCAGTTAGGAGTGAAGACTTTCAGT 59.401 40.000 0.00 0.00 46.96 3.41
2340 6519 7.040340 TCAGTTAGGAGTGAAGACTTTCAGTAG 60.040 40.741 0.00 0.00 44.90 2.57
2362 6576 9.778741 AGTAGAAGTTGTTGAATCAAATCAGTA 57.221 29.630 0.00 0.00 0.00 2.74
2396 6634 9.120538 GCTACTATGGACAGATTTAAAATCCAA 57.879 33.333 14.29 6.79 42.57 3.53
2423 6668 6.759497 AAACCTTGATATGGAAACTAGTGC 57.241 37.500 0.00 0.00 0.00 4.40
2441 6686 3.187227 AGTGCTTTTGATGCTACTGTTCG 59.813 43.478 0.00 0.00 0.00 3.95
2490 6752 9.027129 TCAATTTAATACGATATATGCCGCTAC 57.973 33.333 0.00 0.00 0.00 3.58
2491 6753 7.941795 ATTTAATACGATATATGCCGCTACC 57.058 36.000 0.00 0.00 0.00 3.18
2501 6771 1.917872 TGCCGCTACCTTGGAATTTT 58.082 45.000 0.00 0.00 0.00 1.82
2542 6812 2.368548 TCTGCCTAGTTCAGCTTCACAA 59.631 45.455 4.79 0.00 0.00 3.33
2545 6815 3.181455 TGCCTAGTTCAGCTTCACAAAGA 60.181 43.478 0.00 0.00 34.14 2.52
2549 6819 6.515696 GCCTAGTTCAGCTTCACAAAGATTTT 60.516 38.462 0.00 0.00 34.14 1.82
2614 6886 6.049149 TGTTTCAGACTTTCAGTTAGGAGTG 58.951 40.000 0.00 0.00 0.00 3.51
2615 6887 5.871396 TTCAGACTTTCAGTTAGGAGTGT 57.129 39.130 0.00 0.00 0.00 3.55
2700 6972 2.666272 TGTGCCTGTTGGGTTTATGA 57.334 45.000 0.00 0.00 37.43 2.15
2764 7130 5.930569 TGACTCACATGATTCAGTTCTTCAG 59.069 40.000 0.00 0.00 31.40 3.02
2779 7145 9.917129 TCAGTTCTTCAGTTTAATACGATTACA 57.083 29.630 0.00 0.00 0.00 2.41
2789 7155 8.818057 AGTTTAATACGATTACATTCAGTCTGC 58.182 33.333 0.00 0.00 0.00 4.26
2790 7156 7.709269 TTAATACGATTACATTCAGTCTGCC 57.291 36.000 0.00 0.00 0.00 4.85
2791 7157 3.895232 ACGATTACATTCAGTCTGCCT 57.105 42.857 0.00 0.00 0.00 4.75
2883 7705 4.034048 CGGACAAAATTCAGGTTCTATCCG 59.966 45.833 0.00 0.00 39.38 4.18
2902 7984 3.188254 TCCGACAGCACATTACATTGTTG 59.812 43.478 0.00 0.00 0.00 3.33
2980 8069 9.429359 CAGTATCTGTTTCAATTACTCTGAACT 57.571 33.333 0.00 0.00 32.61 3.01
2999 8088 6.177610 TGAACTAGAAGGTTGTTTGTTGAGT 58.822 36.000 0.00 0.00 0.00 3.41
3040 8129 5.422012 AGTCAAAAATCCACACTGAACCTTT 59.578 36.000 0.00 0.00 0.00 3.11
3357 8506 0.249280 ACGCGGATGTCGATGCATAA 60.249 50.000 12.47 0.00 42.43 1.90
3589 8777 5.949735 TCCAAACTTCTGAAACTGTTTGAC 58.050 37.500 23.96 0.00 46.90 3.18
3616 8862 1.017387 GCATTTCTCTTAGGTGCCGG 58.983 55.000 0.00 0.00 0.00 6.13
3627 8873 2.126346 GTGCCGGCACAGATTTGC 60.126 61.111 46.18 22.96 45.53 3.68
3629 8875 1.002746 TGCCGGCACAGATTTGCTA 60.003 52.632 29.03 0.00 42.56 3.49
3630 8876 0.394216 TGCCGGCACAGATTTGCTAT 60.394 50.000 29.03 0.00 42.56 2.97
3632 8878 1.268743 GCCGGCACAGATTTGCTATTC 60.269 52.381 24.80 0.00 42.56 1.75
3633 8879 2.292267 CCGGCACAGATTTGCTATTCT 58.708 47.619 0.00 0.00 42.56 2.40
3634 8880 2.032550 CCGGCACAGATTTGCTATTCTG 59.967 50.000 15.46 15.46 43.97 3.02
3635 8881 2.540361 CGGCACAGATTTGCTATTCTGC 60.540 50.000 16.54 7.53 42.51 4.26
3660 8910 5.048083 TGAGTTGAGCACTTGAGTTTTGTTT 60.048 36.000 0.00 0.00 35.01 2.83
3662 8912 5.634859 AGTTGAGCACTTGAGTTTTGTTTTG 59.365 36.000 0.00 0.00 27.32 2.44
3675 8925 6.162777 AGTTTTGTTTTGCTGCTGAAAGTTA 58.837 32.000 0.00 0.00 35.30 2.24
3676 8926 6.648725 AGTTTTGTTTTGCTGCTGAAAGTTAA 59.351 30.769 0.00 0.00 35.30 2.01
3677 8927 7.172361 AGTTTTGTTTTGCTGCTGAAAGTTAAA 59.828 29.630 0.00 2.70 35.30 1.52
3680 8930 7.608308 TGTTTTGCTGCTGAAAGTTAAATTT 57.392 28.000 0.00 0.00 35.30 1.82
3682 8932 7.961827 TGTTTTGCTGCTGAAAGTTAAATTTTG 59.038 29.630 1.98 0.91 35.30 2.44
3683 8933 7.608308 TTTGCTGCTGAAAGTTAAATTTTGT 57.392 28.000 1.98 0.00 35.30 2.83
3684 8934 6.586868 TGCTGCTGAAAGTTAAATTTTGTG 57.413 33.333 1.98 0.00 35.30 3.33
3685 8935 6.105333 TGCTGCTGAAAGTTAAATTTTGTGT 58.895 32.000 1.98 0.00 35.30 3.72
3686 8936 7.261325 TGCTGCTGAAAGTTAAATTTTGTGTA 58.739 30.769 1.98 0.00 35.30 2.90
3687 8937 7.221838 TGCTGCTGAAAGTTAAATTTTGTGTAC 59.778 33.333 1.98 0.00 35.30 2.90
3688 8938 7.435192 GCTGCTGAAAGTTAAATTTTGTGTACT 59.565 33.333 1.98 0.00 35.30 2.73
3689 8939 9.301153 CTGCTGAAAGTTAAATTTTGTGTACTT 57.699 29.630 1.98 0.00 35.30 2.24
3690 8940 9.081997 TGCTGAAAGTTAAATTTTGTGTACTTG 57.918 29.630 1.98 0.00 35.30 3.16
3701 8951 8.691661 AATTTTGTGTACTTGAGTCCATTAGT 57.308 30.769 0.00 0.00 0.00 2.24
3717 8968 9.401058 AGTCCATTAGTAGAAGATGAATTTTGG 57.599 33.333 0.00 0.00 0.00 3.28
3767 9018 0.322187 GTGAGGTTAATGTGCCCGGT 60.322 55.000 0.00 0.00 0.00 5.28
3786 9037 2.819608 GGTCAGGAGTTGCTGCATTTTA 59.180 45.455 1.84 0.00 0.00 1.52
3822 9073 5.796424 ATATTTGATTCAGCCAATGGTCC 57.204 39.130 0.00 0.00 0.00 4.46
3823 9074 2.905415 TTGATTCAGCCAATGGTCCT 57.095 45.000 0.00 0.00 0.00 3.85
3842 9104 5.710567 GGTCCTTGGCTATTTTCTGTTAAGT 59.289 40.000 0.00 0.00 0.00 2.24
3852 9114 3.823281 TTCTGTTAAGTTCGGGTGTGA 57.177 42.857 0.00 0.00 0.00 3.58
3859 9121 1.508632 AGTTCGGGTGTGATCGTTTG 58.491 50.000 0.00 0.00 0.00 2.93
3862 9124 1.504359 TCGGGTGTGATCGTTTGAAC 58.496 50.000 0.00 0.00 0.00 3.18
3883 9145 7.283833 TGAACTTATTCGCCAGTCTAACACTG 61.284 42.308 0.00 0.00 43.87 3.66
3898 9160 0.322975 CACTGGACCTGACAAGAGGG 59.677 60.000 5.22 0.00 37.45 4.30
3899 9161 1.298014 CTGGACCTGACAAGAGGGC 59.702 63.158 0.00 0.00 41.04 5.19
3901 9163 3.483587 GACCTGACAAGAGGGCCA 58.516 61.111 6.18 0.00 34.61 5.36
3902 9164 1.994463 GACCTGACAAGAGGGCCAT 59.006 57.895 6.18 0.00 34.61 4.40
3903 9165 0.393537 GACCTGACAAGAGGGCCATG 60.394 60.000 6.18 4.16 34.61 3.66
3905 9167 0.911769 CCTGACAAGAGGGCCATGTA 59.088 55.000 6.18 0.00 0.00 2.29
3906 9168 1.407437 CCTGACAAGAGGGCCATGTAC 60.407 57.143 6.18 3.43 0.00 2.90
3907 9169 1.556911 CTGACAAGAGGGCCATGTACT 59.443 52.381 6.18 0.00 0.00 2.73
3909 9171 3.178046 TGACAAGAGGGCCATGTACTTA 58.822 45.455 6.18 0.00 0.00 2.24
3910 9172 3.585289 TGACAAGAGGGCCATGTACTTAA 59.415 43.478 6.18 0.00 0.00 1.85
3911 9173 3.939592 GACAAGAGGGCCATGTACTTAAC 59.060 47.826 6.18 0.00 0.00 2.01
3912 9174 3.279434 CAAGAGGGCCATGTACTTAACC 58.721 50.000 6.18 0.00 0.00 2.85
3914 9176 1.981259 AGGGCCATGTACTTAACCCT 58.019 50.000 6.18 12.64 42.97 4.34
3915 9177 1.844497 AGGGCCATGTACTTAACCCTC 59.156 52.381 6.18 0.00 44.52 4.30
3916 9178 1.133884 GGGCCATGTACTTAACCCTCC 60.134 57.143 4.39 0.00 34.34 4.30
4089 9581 9.801873 ATTATAACAAACCAAGTATCAATGTGC 57.198 29.630 0.00 0.00 0.00 4.57
4090 9582 4.159377 ACAAACCAAGTATCAATGTGCG 57.841 40.909 0.00 0.00 0.00 5.34
4091 9583 3.818210 ACAAACCAAGTATCAATGTGCGA 59.182 39.130 0.00 0.00 0.00 5.10
4094 9586 3.674997 ACCAAGTATCAATGTGCGAACT 58.325 40.909 0.00 0.00 0.00 3.01
4095 9587 3.436704 ACCAAGTATCAATGTGCGAACTG 59.563 43.478 0.00 0.00 0.00 3.16
4134 9718 9.465985 AAGTAGTCGAACAAAAACAAAAGAAAA 57.534 25.926 0.00 0.00 0.00 2.29
4162 9746 8.398665 GGTTGACTAAAAGATATGACACCATTC 58.601 37.037 0.00 0.00 34.31 2.67
4245 9829 2.470983 TCATCGGTTGCACTCAATGA 57.529 45.000 0.00 0.00 34.29 2.57
4377 11242 8.422566 ACATACAACTCTAGTAGAAAATAGGGC 58.577 37.037 0.64 0.00 0.00 5.19
4378 11243 8.643324 CATACAACTCTAGTAGAAAATAGGGCT 58.357 37.037 0.64 0.00 0.00 5.19
4379 11244 7.497773 ACAACTCTAGTAGAAAATAGGGCTT 57.502 36.000 0.64 0.00 0.00 4.35
4380 11245 7.919151 ACAACTCTAGTAGAAAATAGGGCTTT 58.081 34.615 0.64 0.00 0.00 3.51
4381 11246 7.824779 ACAACTCTAGTAGAAAATAGGGCTTTG 59.175 37.037 0.64 0.00 0.00 2.77
4382 11247 6.890293 ACTCTAGTAGAAAATAGGGCTTTGG 58.110 40.000 0.64 0.00 0.00 3.28
4383 11248 6.444171 ACTCTAGTAGAAAATAGGGCTTTGGT 59.556 38.462 0.64 0.00 0.00 3.67
4391 11256 4.299796 GGGCTTTGGTCCTGGCCA 62.300 66.667 4.71 4.71 45.68 5.36
4392 11257 2.037847 GGCTTTGGTCCTGGCCAT 59.962 61.111 5.51 0.00 43.59 4.40
4393 11258 1.306296 GGCTTTGGTCCTGGCCATA 59.694 57.895 5.51 0.00 43.59 2.74
4394 11259 0.106015 GGCTTTGGTCCTGGCCATAT 60.106 55.000 5.51 0.00 43.59 1.78
4395 11260 1.322442 GCTTTGGTCCTGGCCATATC 58.678 55.000 5.51 0.00 38.48 1.63
4396 11261 1.410083 GCTTTGGTCCTGGCCATATCA 60.410 52.381 5.51 0.38 38.48 2.15
4397 11262 2.579873 CTTTGGTCCTGGCCATATCAG 58.420 52.381 5.51 0.00 38.48 2.90
4398 11263 1.891933 TTGGTCCTGGCCATATCAGA 58.108 50.000 5.51 0.00 38.48 3.27
4399 11264 1.427809 TGGTCCTGGCCATATCAGAG 58.572 55.000 5.51 0.00 34.36 3.35
4400 11265 0.036022 GGTCCTGGCCATATCAGAGC 59.964 60.000 5.51 4.58 34.36 4.09
4401 11266 1.055040 GTCCTGGCCATATCAGAGCT 58.945 55.000 5.51 0.00 34.36 4.09
4402 11267 1.419387 GTCCTGGCCATATCAGAGCTT 59.581 52.381 5.51 0.00 34.36 3.74
4404 11269 3.071602 GTCCTGGCCATATCAGAGCTTTA 59.928 47.826 5.51 0.00 34.36 1.85
4405 11270 3.326006 TCCTGGCCATATCAGAGCTTTAG 59.674 47.826 5.51 0.00 34.36 1.85
4406 11271 3.326006 CCTGGCCATATCAGAGCTTTAGA 59.674 47.826 5.51 0.00 34.36 2.10
4408 11273 3.071602 TGGCCATATCAGAGCTTTAGACC 59.928 47.826 0.00 0.00 0.00 3.85
4409 11274 3.558109 GGCCATATCAGAGCTTTAGACCC 60.558 52.174 0.00 0.00 0.00 4.46
4411 11276 3.574396 CCATATCAGAGCTTTAGACCCGA 59.426 47.826 0.00 0.00 0.00 5.14
4412 11277 4.321601 CCATATCAGAGCTTTAGACCCGAG 60.322 50.000 0.00 0.00 0.00 4.63
4414 11279 0.526524 CAGAGCTTTAGACCCGAGCG 60.527 60.000 0.00 0.00 41.19 5.03
4415 11280 0.680280 AGAGCTTTAGACCCGAGCGA 60.680 55.000 0.00 0.00 41.19 4.93
4418 11283 0.108756 GCTTTAGACCCGAGCGAGTT 60.109 55.000 0.00 0.00 0.00 3.01
4419 11284 1.133790 GCTTTAGACCCGAGCGAGTTA 59.866 52.381 0.00 0.00 0.00 2.24
4422 11287 0.108186 TAGACCCGAGCGAGTTACGA 60.108 55.000 0.00 0.00 45.77 3.43
4424 11289 0.796113 GACCCGAGCGAGTTACGAAC 60.796 60.000 0.00 0.00 45.77 3.95
4426 11291 1.866496 CCGAGCGAGTTACGAACCG 60.866 63.158 0.00 0.00 45.77 4.44
4427 11292 1.866496 CGAGCGAGTTACGAACCGG 60.866 63.158 0.00 0.00 45.77 5.28
4428 11293 1.515736 GAGCGAGTTACGAACCGGG 60.516 63.158 6.32 0.00 45.77 5.73
4429 11294 1.926511 GAGCGAGTTACGAACCGGGA 61.927 60.000 6.32 0.00 45.77 5.14
4430 11295 1.803117 GCGAGTTACGAACCGGGAC 60.803 63.158 6.32 0.00 45.77 4.46
4431 11296 1.878775 CGAGTTACGAACCGGGACT 59.121 57.895 6.32 0.00 45.77 3.85
4432 11297 1.086696 CGAGTTACGAACCGGGACTA 58.913 55.000 6.32 0.00 45.77 2.59
4433 11298 1.468520 CGAGTTACGAACCGGGACTAA 59.531 52.381 6.32 0.00 45.77 2.24
4434 11299 2.098117 CGAGTTACGAACCGGGACTAAT 59.902 50.000 6.32 0.00 45.77 1.73
4437 11302 1.113788 TACGAACCGGGACTAATGGG 58.886 55.000 6.32 0.00 0.00 4.00
4438 11303 0.906282 ACGAACCGGGACTAATGGGT 60.906 55.000 6.32 0.00 0.00 4.51
4439 11304 0.461339 CGAACCGGGACTAATGGGTG 60.461 60.000 6.32 0.00 31.96 4.61
4445 11310 1.811558 CGGGACTAATGGGTGCATCAG 60.812 57.143 0.00 0.00 0.00 2.90
4446 11311 1.212935 GGGACTAATGGGTGCATCAGT 59.787 52.381 0.00 0.00 0.00 3.41
4448 11313 2.565841 GACTAATGGGTGCATCAGTCC 58.434 52.381 0.00 0.00 0.00 3.85
4452 11317 3.717294 GGGTGCATCAGTCCCGGT 61.717 66.667 0.00 0.00 0.00 5.28
4456 11321 2.279810 TGCATCAGTCCCGGTTCGA 61.280 57.895 0.00 0.00 0.00 3.71
4457 11322 1.519455 GCATCAGTCCCGGTTCGAG 60.519 63.158 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.318144 GTGAGGATAATATCATGCCATTCAGG 59.682 42.308 2.41 0.00 41.84 3.86
129 130 4.595986 ACTAACCTTCCACAACACTGTTT 58.404 39.130 0.00 0.00 31.64 2.83
185 192 8.718102 ATCAGTGTACCTGTAATTGTTATGAC 57.282 34.615 10.08 0.00 42.19 3.06
266 276 7.976175 GTGAAGAAGGTGTTTTCAAGAGATTTT 59.024 33.333 0.00 0.00 33.10 1.82
271 281 4.260784 CCGTGAAGAAGGTGTTTTCAAGAG 60.261 45.833 1.88 0.00 33.89 2.85
287 297 1.638133 CAGAGTCTGATGCCGTGAAG 58.362 55.000 15.46 0.00 32.44 3.02
291 301 0.390866 CAAGCAGAGTCTGATGCCGT 60.391 55.000 24.55 0.00 43.60 5.68
300 310 5.063312 GCAGAGTATTTCTTCAAGCAGAGTC 59.937 44.000 0.00 0.00 32.41 3.36
301 311 4.934602 GCAGAGTATTTCTTCAAGCAGAGT 59.065 41.667 0.00 0.00 32.41 3.24
304 314 5.219226 CTGCAGAGTATTTCTTCAAGCAG 57.781 43.478 8.42 0.00 40.57 4.24
309 319 7.093354 CAGTCTAACTGCAGAGTATTTCTTCA 58.907 38.462 23.35 0.00 39.62 3.02
313 323 5.967088 TCCAGTCTAACTGCAGAGTATTTC 58.033 41.667 23.35 4.48 44.63 2.17
316 326 4.605183 ACTCCAGTCTAACTGCAGAGTAT 58.395 43.478 23.35 6.02 42.15 2.12
321 331 3.190744 TCGTTACTCCAGTCTAACTGCAG 59.809 47.826 13.48 13.48 44.63 4.41
322 332 3.151554 TCGTTACTCCAGTCTAACTGCA 58.848 45.455 1.49 0.00 44.63 4.41
323 333 3.844577 TCGTTACTCCAGTCTAACTGC 57.155 47.619 1.49 0.00 44.63 4.40
324 334 5.312120 ACATCGTTACTCCAGTCTAACTG 57.688 43.478 0.01 0.01 45.53 3.16
327 337 5.242171 TGACAACATCGTTACTCCAGTCTAA 59.758 40.000 0.00 0.00 0.00 2.10
328 338 4.763279 TGACAACATCGTTACTCCAGTCTA 59.237 41.667 0.00 0.00 0.00 2.59
329 339 3.572682 TGACAACATCGTTACTCCAGTCT 59.427 43.478 0.00 0.00 0.00 3.24
330 340 3.673809 GTGACAACATCGTTACTCCAGTC 59.326 47.826 0.00 0.00 0.00 3.51
331 341 3.321111 AGTGACAACATCGTTACTCCAGT 59.679 43.478 0.00 0.00 30.50 4.00
332 342 3.914312 AGTGACAACATCGTTACTCCAG 58.086 45.455 0.00 0.00 30.50 3.86
333 343 3.909430 GAGTGACAACATCGTTACTCCA 58.091 45.455 5.04 0.00 43.27 3.86
337 347 5.900339 TGAAAGAGTGACAACATCGTTAC 57.100 39.130 0.00 0.00 0.00 2.50
338 348 6.220201 TCATGAAAGAGTGACAACATCGTTA 58.780 36.000 0.00 0.00 0.00 3.18
360 391 3.706055 GTGACTCAAGGCACCTTCA 57.294 52.632 4.56 0.00 33.42 3.02
366 397 1.133181 TGGATGGGTGACTCAAGGCA 61.133 55.000 0.00 0.00 0.00 4.75
367 398 0.038166 TTGGATGGGTGACTCAAGGC 59.962 55.000 0.00 0.00 0.00 4.35
400 431 6.240894 GCCCAAGTATATTCATCAATCAGGA 58.759 40.000 0.00 0.00 0.00 3.86
402 433 5.122869 CGGCCCAAGTATATTCATCAATCAG 59.877 44.000 0.00 0.00 0.00 2.90
407 438 2.039746 CCCGGCCCAAGTATATTCATCA 59.960 50.000 0.00 0.00 0.00 3.07
414 445 0.104882 TCATCCCCGGCCCAAGTATA 60.105 55.000 0.00 0.00 0.00 1.47
415 446 0.772124 ATCATCCCCGGCCCAAGTAT 60.772 55.000 0.00 0.00 0.00 2.12
438 469 7.203910 AGTGATTCGATGACCTACATTTCTAC 58.796 38.462 0.00 0.00 39.56 2.59
444 475 6.945435 AGATAGAGTGATTCGATGACCTACAT 59.055 38.462 0.00 0.00 42.47 2.29
447 478 6.998673 TGAAGATAGAGTGATTCGATGACCTA 59.001 38.462 0.00 0.00 0.00 3.08
450 481 7.366513 TGATGAAGATAGAGTGATTCGATGAC 58.633 38.462 0.00 0.00 0.00 3.06
451 482 7.516198 TGATGAAGATAGAGTGATTCGATGA 57.484 36.000 0.00 0.00 0.00 2.92
456 487 9.142515 GACATCATGATGAAGATAGAGTGATTC 57.857 37.037 36.37 17.31 41.20 2.52
473 504 6.037500 GGTCAAATCTTTCATCGACATCATGA 59.962 38.462 0.00 0.00 0.00 3.07
478 509 5.738909 AGAGGTCAAATCTTTCATCGACAT 58.261 37.500 0.00 0.00 0.00 3.06
483 514 8.553459 TCTTTGTAGAGGTCAAATCTTTCATC 57.447 34.615 0.00 0.00 34.88 2.92
495 526 5.407407 TGGTCTGATTCTTTGTAGAGGTC 57.593 43.478 0.00 0.00 0.00 3.85
498 529 4.825422 TGCTGGTCTGATTCTTTGTAGAG 58.175 43.478 0.00 0.00 0.00 2.43
501 532 6.707440 TTTTTGCTGGTCTGATTCTTTGTA 57.293 33.333 0.00 0.00 0.00 2.41
562 600 5.629125 AGAGTTTTCTTTTCTGGCAGATCT 58.371 37.500 19.50 11.61 0.00 2.75
570 608 7.553881 TGTGGTTAGAGAGTTTTCTTTTCTG 57.446 36.000 0.00 0.00 32.53 3.02
636 674 7.606858 TTTCAAGAGCTCTATGTTCTTCATG 57.393 36.000 18.59 7.54 42.96 3.07
687 745 2.032860 GCCTCCGGCTGCTATCTTGA 62.033 60.000 0.00 0.00 46.69 3.02
718 776 3.181967 CGCCGCCGTCTGAGAAAG 61.182 66.667 0.00 0.00 0.00 2.62
743 801 2.181021 GTAGTGTCTCCACCGCCG 59.819 66.667 0.00 0.00 42.88 6.46
745 803 1.135460 GTACTGTAGTGTCTCCACCGC 60.135 57.143 0.00 0.00 42.88 5.68
746 804 1.129998 CGTACTGTAGTGTCTCCACCG 59.870 57.143 0.00 0.00 42.88 4.94
747 805 2.161211 GTCGTACTGTAGTGTCTCCACC 59.839 54.545 0.00 0.00 42.88 4.61
748 806 2.810274 TGTCGTACTGTAGTGTCTCCAC 59.190 50.000 0.00 0.00 42.17 4.02
749 807 2.810274 GTGTCGTACTGTAGTGTCTCCA 59.190 50.000 0.00 0.00 0.00 3.86
750 808 2.810274 TGTGTCGTACTGTAGTGTCTCC 59.190 50.000 0.00 0.00 0.00 3.71
751 809 4.478843 TTGTGTCGTACTGTAGTGTCTC 57.521 45.455 0.00 0.00 0.00 3.36
752 810 4.378149 CGATTGTGTCGTACTGTAGTGTCT 60.378 45.833 0.00 0.00 45.19 3.41
753 811 3.844657 CGATTGTGTCGTACTGTAGTGTC 59.155 47.826 0.00 0.00 45.19 3.67
754 812 3.818387 CGATTGTGTCGTACTGTAGTGT 58.182 45.455 0.00 0.00 45.19 3.55
846 949 3.238788 ACCTTCCACAACCCCTTAAAG 57.761 47.619 0.00 0.00 0.00 1.85
850 953 1.427753 CCTAACCTTCCACAACCCCTT 59.572 52.381 0.00 0.00 0.00 3.95
863 966 0.253160 TGATCCAGCCCACCTAACCT 60.253 55.000 0.00 0.00 0.00 3.50
890 997 2.884179 AAATAGGTCCCGAGGCCCGA 62.884 60.000 14.30 0.00 41.76 5.14
928 1046 5.888161 CCAAGGCAGAGTATTTATTCAAGGT 59.112 40.000 0.00 0.00 0.00 3.50
980 1100 1.226831 CGAGGCGGAGAAGAAGAGC 60.227 63.158 0.00 0.00 0.00 4.09
981 1101 1.226831 GCGAGGCGGAGAAGAAGAG 60.227 63.158 0.00 0.00 0.00 2.85
982 1102 2.711922 GGCGAGGCGGAGAAGAAGA 61.712 63.158 0.00 0.00 0.00 2.87
983 1103 2.202810 GGCGAGGCGGAGAAGAAG 60.203 66.667 0.00 0.00 0.00 2.85
984 1104 4.129737 CGGCGAGGCGGAGAAGAA 62.130 66.667 11.32 0.00 0.00 2.52
1004 1137 0.695924 TGATGATGGACGGGTTTGGT 59.304 50.000 0.00 0.00 0.00 3.67
1006 1139 1.949525 GGATGATGATGGACGGGTTTG 59.050 52.381 0.00 0.00 0.00 2.93
1007 1140 1.133792 GGGATGATGATGGACGGGTTT 60.134 52.381 0.00 0.00 0.00 3.27
1013 1170 1.072965 GAGGTGGGGATGATGATGGAC 59.927 57.143 0.00 0.00 0.00 4.02
1014 1171 1.061111 AGAGGTGGGGATGATGATGGA 60.061 52.381 0.00 0.00 0.00 3.41
1224 1427 1.373748 GGTACTGCGCGTTCTGGAA 60.374 57.895 8.43 0.00 0.00 3.53
1349 2753 2.598589 CAAACCAATGCATCCACTTCG 58.401 47.619 0.00 0.00 0.00 3.79
1449 2853 3.041940 GGCGTCGGTGTTCCAGTG 61.042 66.667 0.00 0.00 0.00 3.66
1472 2891 2.359107 AGGTCGTCGGCGTAGTCA 60.359 61.111 10.18 0.00 39.49 3.41
1549 3829 4.452733 GACGTGGAAGGGGAGGCG 62.453 72.222 0.00 0.00 0.00 5.52
1832 5394 3.017265 GAGACCTCCACGTTTACGAAA 57.983 47.619 9.53 0.00 43.02 3.46
1833 5395 2.712057 GAGACCTCCACGTTTACGAA 57.288 50.000 9.53 0.00 43.02 3.85
2026 5588 5.828299 AGCACAGACAGATTAGTAGTCTC 57.172 43.478 0.00 0.00 40.42 3.36
2033 5595 6.506500 AATTTCCAAGCACAGACAGATTAG 57.493 37.500 0.00 0.00 0.00 1.73
2035 5597 5.796424 AAATTTCCAAGCACAGACAGATT 57.204 34.783 0.00 0.00 0.00 2.40
2037 5599 4.202141 CCAAAATTTCCAAGCACAGACAGA 60.202 41.667 0.00 0.00 0.00 3.41
2041 5603 3.037549 ACCCAAAATTTCCAAGCACAGA 58.962 40.909 0.00 0.00 0.00 3.41
2051 5614 6.280643 AGCAGTTTAGAACACCCAAAATTTC 58.719 36.000 0.00 0.00 0.00 2.17
2105 5669 0.393077 AGTTTCAGACTCCACCGGTG 59.607 55.000 28.26 28.26 31.20 4.94
2113 5677 7.365840 ACGGATTATCAAAAGTTTCAGACTC 57.634 36.000 0.00 0.00 37.72 3.36
2142 5706 7.333528 TCAAAGAACAGTAGCATCAAAAGTT 57.666 32.000 0.00 0.00 0.00 2.66
2148 5712 6.233434 ACTGAATCAAAGAACAGTAGCATCA 58.767 36.000 0.00 0.00 40.96 3.07
2150 5714 6.939163 AGAACTGAATCAAAGAACAGTAGCAT 59.061 34.615 0.00 0.00 41.73 3.79
2152 5716 6.793492 AGAACTGAATCAAAGAACAGTAGC 57.207 37.500 0.00 0.00 41.73 3.58
2153 5717 8.370493 TGAAGAACTGAATCAAAGAACAGTAG 57.630 34.615 0.00 0.00 41.73 2.57
2154 5718 8.731275 TTGAAGAACTGAATCAAAGAACAGTA 57.269 30.769 0.00 0.00 41.73 2.74
2155 5719 7.630242 TTGAAGAACTGAATCAAAGAACAGT 57.370 32.000 0.00 0.00 43.92 3.55
2156 5720 9.525409 AAATTGAAGAACTGAATCAAAGAACAG 57.475 29.630 0.00 0.00 36.72 3.16
2183 5803 9.801873 CTGAAATGAAACCCAAAATATCGTATT 57.198 29.630 0.00 0.00 0.00 1.89
2184 5804 8.966868 ACTGAAATGAAACCCAAAATATCGTAT 58.033 29.630 0.00 0.00 0.00 3.06
2227 6186 4.486125 ACACCCAAAATTTTCAAGCACT 57.514 36.364 0.00 0.00 0.00 4.40
2239 6353 7.066525 CAGACTAGTAGTTTTGAACACCCAAAA 59.933 37.037 3.85 0.00 41.92 2.44
2331 6510 9.956720 ATTTGATTCAACAACTTCTACTGAAAG 57.043 29.630 0.00 0.00 42.29 2.62
2332 6511 9.950680 GATTTGATTCAACAACTTCTACTGAAA 57.049 29.630 0.00 0.00 30.37 2.69
2333 6512 9.119418 TGATTTGATTCAACAACTTCTACTGAA 57.881 29.630 0.00 0.00 0.00 3.02
2334 6513 8.675705 TGATTTGATTCAACAACTTCTACTGA 57.324 30.769 0.00 0.00 0.00 3.41
2335 6514 8.562892 ACTGATTTGATTCAACAACTTCTACTG 58.437 33.333 0.00 0.00 0.00 2.74
2336 6515 8.682936 ACTGATTTGATTCAACAACTTCTACT 57.317 30.769 0.00 0.00 0.00 2.57
2337 6516 9.813080 GTACTGATTTGATTCAACAACTTCTAC 57.187 33.333 0.00 0.00 0.00 2.59
2338 6517 9.778741 AGTACTGATTTGATTCAACAACTTCTA 57.221 29.630 0.00 0.00 0.00 2.10
2340 6519 9.736023 AAAGTACTGATTTGATTCAACAACTTC 57.264 29.630 0.00 0.00 0.00 3.01
2362 6576 5.939764 TCTGTCCATAGTAGCATCAAAGT 57.060 39.130 0.00 0.00 0.00 2.66
2396 6634 9.449719 CACTAGTTTCCATATCAAGGTTTAGTT 57.550 33.333 0.00 0.00 0.00 2.24
2420 6665 3.058914 ACGAACAGTAGCATCAAAAGCAC 60.059 43.478 0.00 0.00 0.00 4.40
2423 6668 5.342806 TCAACGAACAGTAGCATCAAAAG 57.657 39.130 0.00 0.00 0.00 2.27
2441 6686 8.037382 TGAAGAACTGAATCATCTGAATCAAC 57.963 34.615 0.08 0.00 33.97 3.18
2476 6724 3.887621 TCCAAGGTAGCGGCATATATC 57.112 47.619 1.45 0.00 0.00 1.63
2490 6752 7.719193 ACTGATTTGGGTTTTAAAATTCCAAGG 59.281 33.333 24.60 20.08 36.33 3.61
2491 6753 8.675705 ACTGATTTGGGTTTTAAAATTCCAAG 57.324 30.769 24.60 19.47 36.33 3.61
2501 6771 5.009610 GCAGACTGAACTGATTTGGGTTTTA 59.990 40.000 6.65 0.00 39.94 1.52
2549 6819 7.170320 CGAAACAGTTACAGTAGGCTAGAAAAA 59.830 37.037 0.00 0.00 0.00 1.94
2764 7130 8.062448 GGCAGACTGAATGTAATCGTATTAAAC 58.938 37.037 6.65 0.00 0.00 2.01
2776 7142 4.382040 GCTGAACTAGGCAGACTGAATGTA 60.382 45.833 16.34 0.00 35.39 2.29
2777 7143 3.618507 GCTGAACTAGGCAGACTGAATGT 60.619 47.826 16.34 0.00 35.39 2.71
2778 7144 2.935201 GCTGAACTAGGCAGACTGAATG 59.065 50.000 16.34 0.00 35.39 2.67
2779 7145 2.836981 AGCTGAACTAGGCAGACTGAAT 59.163 45.455 16.34 0.00 35.39 2.57
2780 7146 2.251818 AGCTGAACTAGGCAGACTGAA 58.748 47.619 16.34 0.00 35.39 3.02
2781 7147 1.930251 AGCTGAACTAGGCAGACTGA 58.070 50.000 16.34 0.00 35.39 3.41
2783 7149 2.028567 GTGAAGCTGAACTAGGCAGACT 60.029 50.000 16.34 10.76 35.39 3.24
2784 7150 2.289072 TGTGAAGCTGAACTAGGCAGAC 60.289 50.000 16.34 9.11 35.39 3.51
2785 7151 1.970640 TGTGAAGCTGAACTAGGCAGA 59.029 47.619 16.34 0.00 35.39 4.26
2786 7152 2.028658 TCTGTGAAGCTGAACTAGGCAG 60.029 50.000 9.74 9.74 36.47 4.85
2787 7153 1.970640 TCTGTGAAGCTGAACTAGGCA 59.029 47.619 0.00 0.00 0.00 4.75
2789 7155 4.493547 CTTCTCTGTGAAGCTGAACTAGG 58.506 47.826 6.55 0.00 44.62 3.02
2823 7238 6.963049 ACAATTACAGTAGGCTAAAGAACG 57.037 37.500 0.00 0.00 0.00 3.95
2883 7705 5.107109 TCACAACAATGTAATGTGCTGTC 57.893 39.130 12.06 0.00 43.15 3.51
2902 7984 5.239525 AGAAAGCTGATGTACAAAACCTCAC 59.760 40.000 0.00 0.00 30.60 3.51
2936 8018 7.171508 CAGATACTGCAACAAGTTTAAGTCAGA 59.828 37.037 0.00 0.00 0.00 3.27
2944 8026 6.449635 TGAAACAGATACTGCAACAAGTTT 57.550 33.333 0.00 0.00 34.37 2.66
2980 8069 5.502079 TCCAACTCAACAAACAACCTTCTA 58.498 37.500 0.00 0.00 0.00 2.10
3040 8129 8.004215 ACCATCAAAGCCAATAGTTTCCATATA 58.996 33.333 0.00 0.00 0.00 0.86
3357 8506 2.503356 CCTGGCTCTGGTATCTTTCTGT 59.497 50.000 0.00 0.00 0.00 3.41
3589 8777 5.735354 GCACCTAAGAGAAATGCATCATTGG 60.735 44.000 0.00 0.00 34.04 3.16
3616 8862 3.376234 TCAGCAGAATAGCAAATCTGTGC 59.624 43.478 12.38 0.00 43.91 4.57
3634 8880 1.876322 ACTCAAGTGCTCAACTCAGC 58.124 50.000 0.00 0.00 38.56 4.26
3635 8881 4.095483 ACAAAACTCAAGTGCTCAACTCAG 59.905 41.667 0.00 0.00 38.56 3.35
3660 8910 6.593382 ACACAAAATTTAACTTTCAGCAGCAA 59.407 30.769 0.00 0.00 0.00 3.91
3662 8912 6.588348 ACACAAAATTTAACTTTCAGCAGC 57.412 33.333 0.00 0.00 0.00 5.25
3675 8925 9.131791 ACTAATGGACTCAAGTACACAAAATTT 57.868 29.630 0.00 0.00 42.51 1.82
3676 8926 8.691661 ACTAATGGACTCAAGTACACAAAATT 57.308 30.769 0.00 0.00 42.51 1.82
3677 8927 9.436957 CTACTAATGGACTCAAGTACACAAAAT 57.563 33.333 0.00 0.00 42.51 1.82
3680 8930 7.770366 TCTACTAATGGACTCAAGTACACAA 57.230 36.000 0.00 0.00 42.51 3.33
3682 8932 8.053026 TCTTCTACTAATGGACTCAAGTACAC 57.947 38.462 0.00 0.00 42.51 2.90
3683 8933 8.687242 CATCTTCTACTAATGGACTCAAGTACA 58.313 37.037 0.00 0.00 44.08 2.90
3684 8934 8.904834 TCATCTTCTACTAATGGACTCAAGTAC 58.095 37.037 0.00 0.00 0.00 2.73
3685 8935 9.475620 TTCATCTTCTACTAATGGACTCAAGTA 57.524 33.333 0.00 0.00 0.00 2.24
3686 8936 7.962995 TCATCTTCTACTAATGGACTCAAGT 57.037 36.000 0.00 0.00 0.00 3.16
3687 8937 9.829507 AATTCATCTTCTACTAATGGACTCAAG 57.170 33.333 0.00 0.00 0.00 3.02
3693 8943 8.336235 ACCCAAAATTCATCTTCTACTAATGGA 58.664 33.333 0.00 0.00 0.00 3.41
3701 8951 8.359642 CAGTGAAAACCCAAAATTCATCTTCTA 58.640 33.333 0.00 0.00 35.70 2.10
3717 8968 3.477210 ACTCTGGTCTCAGTGAAAACC 57.523 47.619 14.71 14.71 41.59 3.27
3767 9018 5.063180 CATTAAAATGCAGCAACTCCTGA 57.937 39.130 0.00 0.00 34.77 3.86
3786 9037 1.606668 CAAATATACCACGGGCGCATT 59.393 47.619 10.83 0.00 0.00 3.56
3822 9073 6.314784 CCGAACTTAACAGAAAATAGCCAAG 58.685 40.000 0.00 0.00 0.00 3.61
3823 9074 5.182380 CCCGAACTTAACAGAAAATAGCCAA 59.818 40.000 0.00 0.00 0.00 4.52
3826 9077 5.180680 ACACCCGAACTTAACAGAAAATAGC 59.819 40.000 0.00 0.00 0.00 2.97
3828 9079 6.289834 TCACACCCGAACTTAACAGAAAATA 58.710 36.000 0.00 0.00 0.00 1.40
3842 9104 1.868498 GTTCAAACGATCACACCCGAA 59.132 47.619 0.00 0.00 0.00 4.30
3852 9114 4.000988 ACTGGCGAATAAGTTCAAACGAT 58.999 39.130 0.00 0.00 33.86 3.73
3859 9121 5.169295 AGTGTTAGACTGGCGAATAAGTTC 58.831 41.667 0.00 0.00 31.75 3.01
3883 9145 1.566298 ATGGCCCTCTTGTCAGGTCC 61.566 60.000 0.00 0.00 0.00 4.46
3898 9160 1.949465 CGGAGGGTTAAGTACATGGC 58.051 55.000 0.00 0.00 0.00 4.40
3899 9161 1.474498 GGCGGAGGGTTAAGTACATGG 60.474 57.143 0.00 0.00 0.00 3.66
3900 9162 1.805120 CGGCGGAGGGTTAAGTACATG 60.805 57.143 0.00 0.00 0.00 3.21
3901 9163 0.462789 CGGCGGAGGGTTAAGTACAT 59.537 55.000 0.00 0.00 0.00 2.29
3902 9164 1.892338 CGGCGGAGGGTTAAGTACA 59.108 57.895 0.00 0.00 0.00 2.90
3903 9165 1.520120 GCGGCGGAGGGTTAAGTAC 60.520 63.158 9.78 0.00 0.00 2.73
3905 9167 1.673808 CTAGCGGCGGAGGGTTAAGT 61.674 60.000 9.78 0.00 0.00 2.24
3906 9168 1.067582 CTAGCGGCGGAGGGTTAAG 59.932 63.158 9.78 0.00 0.00 1.85
3907 9169 3.085119 GCTAGCGGCGGAGGGTTAA 62.085 63.158 9.78 0.00 0.00 2.01
4007 9318 5.010213 CGGGGTAATCTCTGTTTTGGAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
4008 9319 4.521256 CGGGGTAATCTCTGTTTTGGAAAA 59.479 41.667 0.00 0.00 0.00 2.29
4009 9320 4.076394 CGGGGTAATCTCTGTTTTGGAAA 58.924 43.478 0.00 0.00 0.00 3.13
4082 9574 1.447938 GTTTTCGCAGTTCGCACATTG 59.552 47.619 0.00 0.00 42.60 2.82
4088 9580 1.194547 TGAGATGTTTTCGCAGTTCGC 59.805 47.619 0.00 0.00 38.27 4.70
4089 9581 3.059597 ACTTGAGATGTTTTCGCAGTTCG 60.060 43.478 0.00 0.00 35.46 3.95
4090 9582 4.474226 ACTTGAGATGTTTTCGCAGTTC 57.526 40.909 0.00 0.00 35.46 3.01
4091 9583 5.057149 ACTACTTGAGATGTTTTCGCAGTT 58.943 37.500 0.00 0.00 35.46 3.16
4094 9586 3.673338 CGACTACTTGAGATGTTTTCGCA 59.327 43.478 0.00 0.00 31.75 5.10
4095 9587 3.918591 TCGACTACTTGAGATGTTTTCGC 59.081 43.478 0.00 0.00 0.00 4.70
4134 9718 7.458397 TGGTGTCATATCTTTTAGTCAACCTT 58.542 34.615 0.00 0.00 0.00 3.50
4152 9736 0.548510 TGTGTGTGGGAATGGTGTCA 59.451 50.000 0.00 0.00 0.00 3.58
4162 9746 5.299279 GGTCCAATAATAAGATGTGTGTGGG 59.701 44.000 0.00 0.00 0.00 4.61
4197 9781 2.589798 GCACAGGCTACGTATAACCA 57.410 50.000 10.88 0.00 36.96 3.67
4211 9795 2.868583 CCGATGAAAGATGGTAGCACAG 59.131 50.000 0.00 0.00 0.00 3.66
4212 9796 2.236146 ACCGATGAAAGATGGTAGCACA 59.764 45.455 0.00 0.00 31.60 4.57
4221 9805 3.057969 TGAGTGCAACCGATGAAAGAT 57.942 42.857 0.00 0.00 37.80 2.40
4226 9810 2.076100 GTCATTGAGTGCAACCGATGA 58.924 47.619 12.90 12.90 37.80 2.92
4300 9884 5.171339 ACATGTCATCTACCAAGCTTTCT 57.829 39.130 0.00 0.00 0.00 2.52
4359 11224 6.890293 ACCAAAGCCCTATTTTCTACTAGAG 58.110 40.000 0.00 0.00 0.00 2.43
4360 11225 6.126854 GGACCAAAGCCCTATTTTCTACTAGA 60.127 42.308 0.00 0.00 0.00 2.43
4361 11226 6.056236 GGACCAAAGCCCTATTTTCTACTAG 58.944 44.000 0.00 0.00 0.00 2.57
4362 11227 5.729718 AGGACCAAAGCCCTATTTTCTACTA 59.270 40.000 0.00 0.00 0.00 1.82
4364 11229 4.640647 CAGGACCAAAGCCCTATTTTCTAC 59.359 45.833 0.00 0.00 0.00 2.59
4366 11231 3.564352 CCAGGACCAAAGCCCTATTTTCT 60.564 47.826 0.00 0.00 0.00 2.52
4367 11232 2.760650 CCAGGACCAAAGCCCTATTTTC 59.239 50.000 0.00 0.00 0.00 2.29
4369 11234 1.619704 GCCAGGACCAAAGCCCTATTT 60.620 52.381 0.00 0.00 0.00 1.40
4370 11235 0.033109 GCCAGGACCAAAGCCCTATT 60.033 55.000 0.00 0.00 0.00 1.73
4371 11236 1.615262 GCCAGGACCAAAGCCCTAT 59.385 57.895 0.00 0.00 0.00 2.57
4372 11237 2.612493 GGCCAGGACCAAAGCCCTA 61.612 63.158 0.00 0.00 39.60 3.53
4375 11240 0.106015 ATATGGCCAGGACCAAAGCC 60.106 55.000 13.05 11.49 44.65 4.35
4376 11241 1.322442 GATATGGCCAGGACCAAAGC 58.678 55.000 13.05 0.00 44.65 3.51
4377 11242 2.173356 TCTGATATGGCCAGGACCAAAG 59.827 50.000 13.05 2.33 44.65 2.77
4378 11243 2.173356 CTCTGATATGGCCAGGACCAAA 59.827 50.000 13.05 0.00 44.65 3.28
4379 11244 1.770658 CTCTGATATGGCCAGGACCAA 59.229 52.381 13.05 0.00 44.65 3.67
4380 11245 1.427809 CTCTGATATGGCCAGGACCA 58.572 55.000 13.05 5.65 45.82 4.02
4381 11246 0.036022 GCTCTGATATGGCCAGGACC 59.964 60.000 13.05 0.47 32.73 4.46
4382 11247 1.055040 AGCTCTGATATGGCCAGGAC 58.945 55.000 13.05 5.17 32.73 3.85
4383 11248 1.811778 AAGCTCTGATATGGCCAGGA 58.188 50.000 13.05 1.05 32.73 3.86
4386 11251 3.071602 GGTCTAAAGCTCTGATATGGCCA 59.928 47.826 8.56 8.56 0.00 5.36
4387 11252 3.558109 GGGTCTAAAGCTCTGATATGGCC 60.558 52.174 0.00 0.00 0.00 5.36
4388 11253 3.669536 GGGTCTAAAGCTCTGATATGGC 58.330 50.000 0.00 0.00 0.00 4.40
4389 11254 3.574396 TCGGGTCTAAAGCTCTGATATGG 59.426 47.826 0.00 0.00 0.00 2.74
4390 11255 4.804108 CTCGGGTCTAAAGCTCTGATATG 58.196 47.826 0.00 0.00 0.00 1.78
4391 11256 3.257127 GCTCGGGTCTAAAGCTCTGATAT 59.743 47.826 0.00 0.00 33.23 1.63
4392 11257 2.623889 GCTCGGGTCTAAAGCTCTGATA 59.376 50.000 0.00 0.00 33.23 2.15
4393 11258 1.410882 GCTCGGGTCTAAAGCTCTGAT 59.589 52.381 0.00 0.00 33.23 2.90
4394 11259 0.818296 GCTCGGGTCTAAAGCTCTGA 59.182 55.000 0.00 0.00 33.23 3.27
4395 11260 0.526524 CGCTCGGGTCTAAAGCTCTG 60.527 60.000 0.00 0.00 33.83 3.35
4396 11261 0.680280 TCGCTCGGGTCTAAAGCTCT 60.680 55.000 0.00 0.00 33.83 4.09
4397 11262 0.248702 CTCGCTCGGGTCTAAAGCTC 60.249 60.000 0.00 0.00 33.83 4.09
4398 11263 0.966370 ACTCGCTCGGGTCTAAAGCT 60.966 55.000 0.00 0.00 33.83 3.74
4399 11264 0.108756 AACTCGCTCGGGTCTAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
4400 11265 2.790468 CGTAACTCGCTCGGGTCTAAAG 60.790 54.545 0.00 0.00 0.00 1.85
4401 11266 1.131126 CGTAACTCGCTCGGGTCTAAA 59.869 52.381 0.00 0.00 0.00 1.85
4402 11267 0.729116 CGTAACTCGCTCGGGTCTAA 59.271 55.000 0.00 0.00 0.00 2.10
4404 11269 0.957395 TTCGTAACTCGCTCGGGTCT 60.957 55.000 0.00 0.00 39.67 3.85
4405 11270 0.796113 GTTCGTAACTCGCTCGGGTC 60.796 60.000 0.00 0.00 39.67 4.46
4406 11271 1.211190 GTTCGTAACTCGCTCGGGT 59.789 57.895 0.00 0.00 39.67 5.28
4408 11273 1.866496 CGGTTCGTAACTCGCTCGG 60.866 63.158 0.00 0.00 39.67 4.63
4409 11274 1.866496 CCGGTTCGTAACTCGCTCG 60.866 63.158 0.00 0.00 39.67 5.03
4411 11276 1.973281 TCCCGGTTCGTAACTCGCT 60.973 57.895 0.00 0.00 39.67 4.93
4412 11277 1.803117 GTCCCGGTTCGTAACTCGC 60.803 63.158 0.00 0.00 39.67 5.03
4414 11279 3.442100 CATTAGTCCCGGTTCGTAACTC 58.558 50.000 0.00 0.00 0.00 3.01
4415 11280 2.167075 CCATTAGTCCCGGTTCGTAACT 59.833 50.000 0.00 0.00 0.00 2.24
4418 11283 1.113788 CCCATTAGTCCCGGTTCGTA 58.886 55.000 0.00 0.00 0.00 3.43
4419 11284 0.906282 ACCCATTAGTCCCGGTTCGT 60.906 55.000 0.00 0.00 0.00 3.85
4422 11287 1.301954 GCACCCATTAGTCCCGGTT 59.698 57.895 0.00 0.00 0.00 4.44
4424 11289 0.535102 GATGCACCCATTAGTCCCGG 60.535 60.000 0.00 0.00 0.00 5.73
4426 11291 1.212935 ACTGATGCACCCATTAGTCCC 59.787 52.381 0.00 0.00 42.61 4.46
4427 11292 2.717639 ACTGATGCACCCATTAGTCC 57.282 50.000 0.00 0.00 42.61 3.85
4430 11295 1.811558 CGGGACTGATGCACCCATTAG 60.812 57.143 9.80 0.00 43.40 1.73
4431 11296 0.180171 CGGGACTGATGCACCCATTA 59.820 55.000 9.80 0.00 43.40 1.90
4432 11297 1.077501 CGGGACTGATGCACCCATT 60.078 57.895 9.80 0.00 43.40 3.16
4433 11298 2.591753 CGGGACTGATGCACCCAT 59.408 61.111 9.80 0.00 43.40 4.00
4434 11299 3.716195 CCGGGACTGATGCACCCA 61.716 66.667 9.80 0.57 43.40 4.51
4437 11302 2.100631 CGAACCGGGACTGATGCAC 61.101 63.158 6.32 0.00 0.00 4.57
4438 11303 2.225791 CTCGAACCGGGACTGATGCA 62.226 60.000 6.32 0.00 0.00 3.96
4439 11304 1.519455 CTCGAACCGGGACTGATGC 60.519 63.158 6.32 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.