Multiple sequence alignment - TraesCS7D01G108700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G108700 chr7D 100.000 3005 0 0 1 3005 65436325 65439329 0.000000e+00 5550
1 TraesCS7D01G108700 chr7D 85.309 599 56 13 1597 2186 65627000 65626425 9.280000e-165 590
2 TraesCS7D01G108700 chr7D 86.364 110 10 4 2241 2347 65626190 65626083 6.810000e-22 115
3 TraesCS7D01G108700 chr7B 93.071 2540 117 25 1 2513 7039364 7036857 0.000000e+00 3661
4 TraesCS7D01G108700 chr7B 95.631 412 15 3 2512 2920 7036774 7036363 0.000000e+00 658
5 TraesCS7D01G108700 chr7A 95.602 1205 49 1 866 2070 69568139 69569339 0.000000e+00 1929
6 TraesCS7D01G108700 chr7A 95.436 1205 51 1 866 2070 69618534 69619734 0.000000e+00 1917
7 TraesCS7D01G108700 chr7A 92.680 724 35 15 2232 2946 69569577 69570291 0.000000e+00 1027
8 TraesCS7D01G108700 chr7A 92.276 725 38 15 2232 2946 69619972 69620688 0.000000e+00 1013
9 TraesCS7D01G108700 chr7A 81.640 817 116 22 1 810 69617612 69618401 0.000000e+00 647
10 TraesCS7D01G108700 chr7A 85.503 338 39 5 1 333 69567260 69567592 7.980000e-91 344
11 TraesCS7D01G108700 chr7A 95.035 141 5 2 2067 2207 69569458 69569596 1.400000e-53 220
12 TraesCS7D01G108700 chr7A 95.035 141 5 2 2067 2207 69619853 69619991 1.400000e-53 220
13 TraesCS7D01G108700 chr7A 85.167 209 27 4 603 810 69567801 69568006 8.440000e-51 211
14 TraesCS7D01G108700 chr7A 97.015 67 1 1 2403 2469 69620054 69620119 8.810000e-21 111
15 TraesCS7D01G108700 chr7A 95.522 67 2 1 2403 2469 69569659 69569724 4.100000e-19 106
16 TraesCS7D01G108700 chr2B 89.355 977 90 4 1072 2035 110417466 110416491 0.000000e+00 1216
17 TraesCS7D01G108700 chr2B 78.282 815 137 33 1179 1985 111035649 111034867 3.480000e-134 488
18 TraesCS7D01G108700 chr2D 89.228 984 88 9 1072 2040 73009969 73008989 0.000000e+00 1214
19 TraesCS7D01G108700 chr2D 79.503 805 127 31 1179 1976 73316902 73317675 3.410000e-149 538
20 TraesCS7D01G108700 chr2D 77.184 824 149 29 1181 1996 73268680 73269472 7.640000e-121 444
21 TraesCS7D01G108700 chr2A 88.481 981 94 13 1072 2035 71614034 71613056 0.000000e+00 1168


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G108700 chr7D 65436325 65439329 3004 False 5550.0 5550 100.000000 1 3005 1 chr7D.!!$F1 3004
1 TraesCS7D01G108700 chr7D 65626083 65627000 917 True 352.5 590 85.836500 1597 2347 2 chr7D.!!$R1 750
2 TraesCS7D01G108700 chr7B 7036363 7039364 3001 True 2159.5 3661 94.351000 1 2920 2 chr7B.!!$R1 2919
3 TraesCS7D01G108700 chr7A 69617612 69620688 3076 False 781.6 1917 92.280400 1 2946 5 chr7A.!!$F2 2945
4 TraesCS7D01G108700 chr7A 69567260 69570291 3031 False 639.5 1929 91.584833 1 2946 6 chr7A.!!$F1 2945
5 TraesCS7D01G108700 chr2B 110416491 110417466 975 True 1216.0 1216 89.355000 1072 2035 1 chr2B.!!$R1 963
6 TraesCS7D01G108700 chr2B 111034867 111035649 782 True 488.0 488 78.282000 1179 1985 1 chr2B.!!$R2 806
7 TraesCS7D01G108700 chr2D 73008989 73009969 980 True 1214.0 1214 89.228000 1072 2040 1 chr2D.!!$R1 968
8 TraesCS7D01G108700 chr2D 73316902 73317675 773 False 538.0 538 79.503000 1179 1976 1 chr2D.!!$F2 797
9 TraesCS7D01G108700 chr2D 73268680 73269472 792 False 444.0 444 77.184000 1181 1996 1 chr2D.!!$F1 815
10 TraesCS7D01G108700 chr2A 71613056 71614034 978 True 1168.0 1168 88.481000 1072 2035 1 chr2A.!!$R1 963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 719 0.466922 AATGCCCAGCCATCTACTGC 60.467 55.0 0.00 0.0 33.65 4.40 F
1035 1165 1.347320 GCGTCCTTTTCAGGTACGAG 58.653 55.0 13.83 0.0 42.06 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1948 1.095600 CCTGATCAACTCCTCGTCGA 58.904 55.0 0.0 0.0 0.0 4.20 R
2950 3532 0.610232 AGTTCTTGTGGATGGGCTGC 60.610 55.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 2.738521 CGACGGGCTCAACCACTG 60.739 66.667 0.00 0.00 42.05 3.66
206 213 7.996098 TCATCACCGACAGTCTATCATATAA 57.004 36.000 0.00 0.00 0.00 0.98
207 214 8.581253 TCATCACCGACAGTCTATCATATAAT 57.419 34.615 0.00 0.00 0.00 1.28
208 215 9.681062 TCATCACCGACAGTCTATCATATAATA 57.319 33.333 0.00 0.00 0.00 0.98
240 253 2.505982 CCGATTCCACGGCTCCAT 59.494 61.111 0.00 0.00 46.20 3.41
255 268 2.679639 GCTCCATGATGTTTCCACCGTA 60.680 50.000 0.00 0.00 0.00 4.02
275 288 5.106436 CCGTAACCTAAAAATTCTTTCGCCT 60.106 40.000 0.00 0.00 0.00 5.52
291 304 7.140048 TCTTTCGCCTCGCTTTTTAAATAAAA 58.860 30.769 0.00 0.00 33.71 1.52
313 326 4.533222 ACAACTACGCAAACATACAAAGC 58.467 39.130 0.00 0.00 0.00 3.51
375 399 9.260002 CATAACTCAACAAGCCTAAAAACATTT 57.740 29.630 0.00 0.00 0.00 2.32
379 403 8.691797 ACTCAACAAGCCTAAAAACATTTTCTA 58.308 29.630 0.00 0.00 0.00 2.10
380 404 9.528018 CTCAACAAGCCTAAAAACATTTTCTAA 57.472 29.630 0.00 0.00 0.00 2.10
381 405 9.877178 TCAACAAGCCTAAAAACATTTTCTAAA 57.123 25.926 0.00 0.00 0.00 1.85
422 446 3.638627 AGAGAAAAGAAAGGGCCAACAAG 59.361 43.478 6.18 0.00 0.00 3.16
543 568 1.449423 CGATGGCGTCATGTTCCCA 60.449 57.895 7.54 0.00 32.98 4.37
575 600 2.684843 GCTTCCACGGCTGCAGAAG 61.685 63.158 20.43 17.03 38.98 2.85
594 619 6.294731 GCAGAAGACCACACCATTTAGAAATT 60.295 38.462 0.00 0.00 0.00 1.82
671 696 1.269051 CCAAAGCGTTCACCAAAGGAC 60.269 52.381 0.00 0.00 0.00 3.85
691 716 1.602311 CTCAATGCCCAGCCATCTAC 58.398 55.000 0.00 0.00 0.00 2.59
694 719 0.466922 AATGCCCAGCCATCTACTGC 60.467 55.000 0.00 0.00 33.65 4.40
834 964 5.109903 GTTGCTCAAACGGACATATCTAGT 58.890 41.667 0.00 0.00 0.00 2.57
836 966 6.650427 TGCTCAAACGGACATATCTAGTAT 57.350 37.500 0.00 0.00 0.00 2.12
886 1016 9.367160 TGAGTGATAAGTAATATGGATGACAGA 57.633 33.333 0.00 0.00 0.00 3.41
1035 1165 1.347320 GCGTCCTTTTCAGGTACGAG 58.653 55.000 13.83 0.00 42.06 4.18
1191 1327 3.718210 CTCTCGTAGGTTGGCCGGC 62.718 68.421 21.18 21.18 40.50 6.13
1994 2146 3.479269 GAAGCCGCTCAACGTCCG 61.479 66.667 0.00 0.00 41.42 4.79
2035 2197 2.234913 ATCGTGCCGGGTTACAGGAC 62.235 60.000 2.18 0.00 33.92 3.85
2201 2630 9.059260 GTACCTTTCTATTTGAGTGTTTGGTTA 57.941 33.333 0.00 0.00 0.00 2.85
2225 2657 6.821388 AGAGGACCATATGTTATCACAGAAC 58.179 40.000 1.24 0.00 35.94 3.01
2226 2658 6.384015 AGAGGACCATATGTTATCACAGAACA 59.616 38.462 1.24 0.00 40.88 3.18
2239 2715 9.769093 GTTATCACAGAACATGTAATTTGGTAC 57.231 33.333 0.00 0.00 41.41 3.34
2930 3512 9.051679 AGTGCATATGTCGTATAAGCAATAAAA 57.948 29.630 4.29 0.00 31.78 1.52
2946 3528 8.358582 AGCAATAAAATGAGAAAGGTGAGATT 57.641 30.769 0.00 0.00 0.00 2.40
2947 3529 8.248945 AGCAATAAAATGAGAAAGGTGAGATTG 58.751 33.333 0.00 0.00 0.00 2.67
2948 3530 8.031277 GCAATAAAATGAGAAAGGTGAGATTGT 58.969 33.333 0.00 0.00 0.00 2.71
2949 3531 9.350357 CAATAAAATGAGAAAGGTGAGATTGTG 57.650 33.333 0.00 0.00 0.00 3.33
2950 3532 5.972107 AAATGAGAAAGGTGAGATTGTGG 57.028 39.130 0.00 0.00 0.00 4.17
2951 3533 2.783135 TGAGAAAGGTGAGATTGTGGC 58.217 47.619 0.00 0.00 0.00 5.01
2952 3534 2.106338 TGAGAAAGGTGAGATTGTGGCA 59.894 45.455 0.00 0.00 0.00 4.92
2953 3535 2.746362 GAGAAAGGTGAGATTGTGGCAG 59.254 50.000 0.00 0.00 0.00 4.85
2954 3536 1.200948 GAAAGGTGAGATTGTGGCAGC 59.799 52.381 0.00 0.00 0.00 5.25
2955 3537 0.610232 AAGGTGAGATTGTGGCAGCC 60.610 55.000 3.66 3.66 0.00 4.85
2956 3538 2.048603 GGTGAGATTGTGGCAGCCC 61.049 63.158 9.64 0.29 0.00 5.19
2957 3539 1.303561 GTGAGATTGTGGCAGCCCA 60.304 57.895 9.64 3.44 39.32 5.36
2958 3540 0.682209 GTGAGATTGTGGCAGCCCAT 60.682 55.000 9.64 0.00 44.51 4.00
2959 3541 0.394762 TGAGATTGTGGCAGCCCATC 60.395 55.000 9.64 8.09 44.51 3.51
2960 3542 1.076485 AGATTGTGGCAGCCCATCC 60.076 57.895 9.64 1.99 44.51 3.51
2961 3543 1.380246 GATTGTGGCAGCCCATCCA 60.380 57.895 9.64 0.00 44.51 3.41
2965 3547 2.036098 TGGCAGCCCATCCACAAG 59.964 61.111 9.64 0.00 35.79 3.16
2966 3548 2.356278 GGCAGCCCATCCACAAGA 59.644 61.111 0.00 0.00 0.00 3.02
2967 3549 1.304381 GGCAGCCCATCCACAAGAA 60.304 57.895 0.00 0.00 0.00 2.52
2968 3550 1.598701 GGCAGCCCATCCACAAGAAC 61.599 60.000 0.00 0.00 0.00 3.01
2969 3551 0.610232 GCAGCCCATCCACAAGAACT 60.610 55.000 0.00 0.00 0.00 3.01
2970 3552 1.457346 CAGCCCATCCACAAGAACTC 58.543 55.000 0.00 0.00 0.00 3.01
2971 3553 1.067295 AGCCCATCCACAAGAACTCA 58.933 50.000 0.00 0.00 0.00 3.41
2972 3554 1.004044 AGCCCATCCACAAGAACTCAG 59.996 52.381 0.00 0.00 0.00 3.35
2973 3555 1.457346 CCCATCCACAAGAACTCAGC 58.543 55.000 0.00 0.00 0.00 4.26
2974 3556 1.271543 CCCATCCACAAGAACTCAGCA 60.272 52.381 0.00 0.00 0.00 4.41
2975 3557 2.507484 CCATCCACAAGAACTCAGCAA 58.493 47.619 0.00 0.00 0.00 3.91
2976 3558 2.886523 CCATCCACAAGAACTCAGCAAA 59.113 45.455 0.00 0.00 0.00 3.68
2977 3559 3.318839 CCATCCACAAGAACTCAGCAAAA 59.681 43.478 0.00 0.00 0.00 2.44
2978 3560 4.021719 CCATCCACAAGAACTCAGCAAAAT 60.022 41.667 0.00 0.00 0.00 1.82
2979 3561 5.510179 CCATCCACAAGAACTCAGCAAAATT 60.510 40.000 0.00 0.00 0.00 1.82
2980 3562 5.596836 TCCACAAGAACTCAGCAAAATTT 57.403 34.783 0.00 0.00 0.00 1.82
2981 3563 5.350633 TCCACAAGAACTCAGCAAAATTTG 58.649 37.500 0.57 0.57 0.00 2.32
2982 3564 5.126869 TCCACAAGAACTCAGCAAAATTTGA 59.873 36.000 10.26 0.00 0.00 2.69
2983 3565 5.987347 CCACAAGAACTCAGCAAAATTTGAT 59.013 36.000 10.26 0.00 0.00 2.57
2984 3566 6.480981 CCACAAGAACTCAGCAAAATTTGATT 59.519 34.615 10.26 0.00 0.00 2.57
2985 3567 7.011669 CCACAAGAACTCAGCAAAATTTGATTT 59.988 33.333 10.26 0.00 0.00 2.17
2986 3568 8.392612 CACAAGAACTCAGCAAAATTTGATTTT 58.607 29.630 10.26 0.00 42.81 1.82
2987 3569 8.606602 ACAAGAACTCAGCAAAATTTGATTTTC 58.393 29.630 10.26 5.87 40.27 2.29
2988 3570 7.719778 AGAACTCAGCAAAATTTGATTTTCC 57.280 32.000 10.26 0.00 40.27 3.13
2989 3571 6.707608 AGAACTCAGCAAAATTTGATTTTCCC 59.292 34.615 10.26 0.00 40.27 3.97
2990 3572 6.178607 ACTCAGCAAAATTTGATTTTCCCT 57.821 33.333 10.26 0.00 40.27 4.20
2991 3573 5.993441 ACTCAGCAAAATTTGATTTTCCCTG 59.007 36.000 10.26 5.53 40.27 4.45
2992 3574 6.172136 TCAGCAAAATTTGATTTTCCCTGA 57.828 33.333 10.26 7.72 40.95 3.86
2993 3575 6.225318 TCAGCAAAATTTGATTTTCCCTGAG 58.775 36.000 10.26 0.00 39.78 3.35
2994 3576 5.993441 CAGCAAAATTTGATTTTCCCTGAGT 59.007 36.000 10.26 0.00 40.27 3.41
2995 3577 6.484308 CAGCAAAATTTGATTTTCCCTGAGTT 59.516 34.615 10.26 0.00 40.27 3.01
2996 3578 7.012610 CAGCAAAATTTGATTTTCCCTGAGTTT 59.987 33.333 10.26 0.00 40.27 2.66
2997 3579 7.227314 AGCAAAATTTGATTTTCCCTGAGTTTC 59.773 33.333 10.26 0.00 40.27 2.78
2998 3580 7.012232 GCAAAATTTGATTTTCCCTGAGTTTCA 59.988 33.333 10.26 0.00 40.27 2.69
2999 3581 8.337532 CAAAATTTGATTTTCCCTGAGTTTCAC 58.662 33.333 0.00 0.00 40.27 3.18
3000 3582 6.729690 ATTTGATTTTCCCTGAGTTTCACA 57.270 33.333 0.00 0.00 0.00 3.58
3001 3583 6.537453 TTTGATTTTCCCTGAGTTTCACAA 57.463 33.333 0.00 0.00 0.00 3.33
3002 3584 6.729690 TTGATTTTCCCTGAGTTTCACAAT 57.270 33.333 0.00 0.00 0.00 2.71
3003 3585 7.831691 TTGATTTTCCCTGAGTTTCACAATA 57.168 32.000 0.00 0.00 0.00 1.90
3004 3586 7.831691 TGATTTTCCCTGAGTTTCACAATAA 57.168 32.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 8.370182 ACATAAGTAGCTAGACTAGAGTACCTC 58.630 40.741 13.91 0.00 0.00 3.85
142 147 3.497297 TCGCACGAGCAGACTAATAAA 57.503 42.857 5.50 0.00 42.27 1.40
206 213 5.491982 GAATCGGTGGAAATAGATGCCTAT 58.508 41.667 0.00 0.00 37.19 2.57
207 214 4.262894 GGAATCGGTGGAAATAGATGCCTA 60.263 45.833 0.00 0.00 36.19 3.93
208 215 3.496870 GGAATCGGTGGAAATAGATGCCT 60.497 47.826 0.00 0.00 36.19 4.75
224 237 0.250038 ATCATGGAGCCGTGGAATCG 60.250 55.000 8.76 0.00 33.99 3.34
237 250 2.422127 GGTTACGGTGGAAACATCATGG 59.578 50.000 0.00 0.00 43.61 3.66
240 253 4.620589 TTAGGTTACGGTGGAAACATCA 57.379 40.909 0.00 0.00 43.61 3.07
255 268 4.615223 GCGAGGCGAAAGAATTTTTAGGTT 60.615 41.667 0.00 0.00 39.27 3.50
275 288 7.642978 TGCGTAGTTGTTTTATTTAAAAAGCGA 59.357 29.630 0.00 0.00 36.97 4.93
291 304 4.533222 GCTTTGTATGTTTGCGTAGTTGT 58.467 39.130 0.00 0.00 0.00 3.32
347 371 6.040391 TGTTTTTAGGCTTGTTGAGTTATGCT 59.960 34.615 0.00 0.00 0.00 3.79
389 413 6.925718 CCCTTTCTTTTCTCTTTTTAGGCTTG 59.074 38.462 0.00 0.00 0.00 4.01
393 417 5.304357 TGGCCCTTTCTTTTCTCTTTTTAGG 59.696 40.000 0.00 0.00 0.00 2.69
400 424 3.312736 TGTTGGCCCTTTCTTTTCTCT 57.687 42.857 0.00 0.00 0.00 3.10
422 446 2.902343 GTATCCCTGCTTGCGCCC 60.902 66.667 4.18 0.00 34.43 6.13
486 510 1.815421 CGTCCTTGGCCTTCCATCG 60.815 63.158 3.32 0.00 43.05 3.84
488 512 1.915078 CTCCGTCCTTGGCCTTCCAT 61.915 60.000 3.32 0.00 43.05 3.41
489 513 2.528127 TCCGTCCTTGGCCTTCCA 60.528 61.111 3.32 0.00 41.55 3.53
500 524 0.755686 ATCATCTTCAGCCTCCGTCC 59.244 55.000 0.00 0.00 0.00 4.79
543 568 3.372554 GAAGCCGCTTAGCCGTCCT 62.373 63.158 5.38 0.00 0.00 3.85
575 600 8.050778 TGATACAATTTCTAAATGGTGTGGTC 57.949 34.615 5.83 4.24 33.64 4.02
594 619 1.842052 TGTGCCGACCTACTGATACA 58.158 50.000 0.00 0.00 0.00 2.29
643 668 3.007074 TGGTGAACGCTTTGGACTATACA 59.993 43.478 0.00 0.00 0.00 2.29
671 696 0.475475 TAGATGGCTGGGCATTGAGG 59.525 55.000 10.83 0.00 0.00 3.86
691 716 2.876645 GCCTCGTTCTCGTCGCAG 60.877 66.667 0.00 0.00 38.33 5.18
694 719 2.276743 CTCGCCTCGTTCTCGTCG 60.277 66.667 0.00 0.00 38.33 5.12
1035 1165 1.737201 CGGACCACACCAAAAACCC 59.263 57.895 0.00 0.00 0.00 4.11
1134 1267 4.680237 CGTGACGGGCTTCCTGCA 62.680 66.667 0.00 0.00 45.15 4.41
1191 1327 2.040544 GGTGATCACGGCCACCTTG 61.041 63.158 19.33 0.00 46.94 3.61
1473 1609 2.764128 TCCAGGGACTCGATGGCC 60.764 66.667 0.00 0.00 45.48 5.36
1772 1908 3.883549 GGCCCAGCATCTCCCTCC 61.884 72.222 0.00 0.00 0.00 4.30
1808 1948 1.095600 CCTGATCAACTCCTCGTCGA 58.904 55.000 0.00 0.00 0.00 4.20
1905 2057 3.064987 ATCGTCGGACGCCAGGAAG 62.065 63.158 24.76 0.00 42.21 3.46
2066 2228 4.694339 ACTGAGACCAAAGTACACTGTTC 58.306 43.478 0.00 0.00 0.00 3.18
2134 2427 1.889545 ACCTTTCAGAGCAGCTCAAC 58.110 50.000 24.64 0.00 32.06 3.18
2201 2630 6.384015 TGTTCTGTGATAACATATGGTCCTCT 59.616 38.462 7.80 0.00 32.07 3.69
2225 2657 6.350110 CCTCCAACCAAGTACCAAATTACATG 60.350 42.308 0.00 0.00 0.00 3.21
2226 2658 5.714806 CCTCCAACCAAGTACCAAATTACAT 59.285 40.000 0.00 0.00 0.00 2.29
2239 2715 2.816087 CTGTCATGTTCCTCCAACCAAG 59.184 50.000 0.00 0.00 33.51 3.61
2915 3497 9.438291 CACCTTTCTCATTTTATTGCTTATACG 57.562 33.333 0.00 0.00 0.00 3.06
2930 3512 3.245016 TGCCACAATCTCACCTTTCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
2948 3530 2.036098 CTTGTGGATGGGCTGCCA 59.964 61.111 22.05 7.16 0.00 4.92
2949 3531 1.304381 TTCTTGTGGATGGGCTGCC 60.304 57.895 11.05 11.05 0.00 4.85
2950 3532 0.610232 AGTTCTTGTGGATGGGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
2951 3533 1.271543 TGAGTTCTTGTGGATGGGCTG 60.272 52.381 0.00 0.00 0.00 4.85
2952 3534 1.004044 CTGAGTTCTTGTGGATGGGCT 59.996 52.381 0.00 0.00 0.00 5.19
2953 3535 1.457346 CTGAGTTCTTGTGGATGGGC 58.543 55.000 0.00 0.00 0.00 5.36
2954 3536 1.271543 TGCTGAGTTCTTGTGGATGGG 60.272 52.381 0.00 0.00 0.00 4.00
2955 3537 2.189594 TGCTGAGTTCTTGTGGATGG 57.810 50.000 0.00 0.00 0.00 3.51
2956 3538 4.572985 TTTTGCTGAGTTCTTGTGGATG 57.427 40.909 0.00 0.00 0.00 3.51
2957 3539 5.796424 AATTTTGCTGAGTTCTTGTGGAT 57.204 34.783 0.00 0.00 0.00 3.41
2958 3540 5.126869 TCAAATTTTGCTGAGTTCTTGTGGA 59.873 36.000 4.19 0.00 0.00 4.02
2959 3541 5.350633 TCAAATTTTGCTGAGTTCTTGTGG 58.649 37.500 4.19 0.00 0.00 4.17
2960 3542 7.473027 AATCAAATTTTGCTGAGTTCTTGTG 57.527 32.000 4.19 0.00 0.00 3.33
2961 3543 8.496707 AAAATCAAATTTTGCTGAGTTCTTGT 57.503 26.923 4.19 0.00 40.69 3.16
2962 3544 8.066000 GGAAAATCAAATTTTGCTGAGTTCTTG 58.934 33.333 4.19 0.00 44.16 3.02
2963 3545 7.227314 GGGAAAATCAAATTTTGCTGAGTTCTT 59.773 33.333 13.82 0.00 45.98 2.52
2964 3546 6.707608 GGGAAAATCAAATTTTGCTGAGTTCT 59.292 34.615 13.82 0.00 45.98 3.01
2965 3547 6.707608 AGGGAAAATCAAATTTTGCTGAGTTC 59.292 34.615 13.82 4.07 45.98 3.01
2966 3548 6.484308 CAGGGAAAATCAAATTTTGCTGAGTT 59.516 34.615 13.82 0.00 45.98 3.01
2967 3549 5.993441 CAGGGAAAATCAAATTTTGCTGAGT 59.007 36.000 13.82 0.00 45.98 3.41
2968 3550 6.225318 TCAGGGAAAATCAAATTTTGCTGAG 58.775 36.000 13.82 6.80 45.98 3.35
2969 3551 6.172136 TCAGGGAAAATCAAATTTTGCTGA 57.828 33.333 13.82 12.30 45.98 4.26
2970 3552 5.993441 ACTCAGGGAAAATCAAATTTTGCTG 59.007 36.000 13.82 10.80 45.98 4.41
2971 3553 6.178607 ACTCAGGGAAAATCAAATTTTGCT 57.821 33.333 13.82 0.00 45.98 3.91
2972 3554 6.866010 AACTCAGGGAAAATCAAATTTTGC 57.134 33.333 4.19 7.80 45.99 3.68
2973 3555 8.337532 GTGAAACTCAGGGAAAATCAAATTTTG 58.662 33.333 2.59 2.59 42.15 2.44
2974 3556 8.046107 TGTGAAACTCAGGGAAAATCAAATTTT 58.954 29.630 0.00 0.00 40.77 1.82
2975 3557 7.563906 TGTGAAACTCAGGGAAAATCAAATTT 58.436 30.769 0.00 0.00 38.04 1.82
2976 3558 7.123355 TGTGAAACTCAGGGAAAATCAAATT 57.877 32.000 0.00 0.00 38.04 1.82
2977 3559 6.729690 TGTGAAACTCAGGGAAAATCAAAT 57.270 33.333 0.00 0.00 38.04 2.32
2978 3560 6.537453 TTGTGAAACTCAGGGAAAATCAAA 57.463 33.333 0.00 0.00 38.04 2.69
2979 3561 6.729690 ATTGTGAAACTCAGGGAAAATCAA 57.270 33.333 0.00 0.00 38.04 2.57
2980 3562 7.831691 TTATTGTGAAACTCAGGGAAAATCA 57.168 32.000 0.00 0.00 38.04 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.