Multiple sequence alignment - TraesCS7D01G108100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G108100 chr7D 100.000 3448 0 0 1 3448 64831547 64828100 0.000000e+00 6368.0
1 TraesCS7D01G108100 chr7D 84.160 2582 324 59 228 2774 64810370 64807839 0.000000e+00 2423.0
2 TraesCS7D01G108100 chr7D 82.600 1954 270 53 754 2672 73363089 73365007 0.000000e+00 1661.0
3 TraesCS7D01G108100 chr7D 82.389 1959 274 54 752 2672 73621118 73619193 0.000000e+00 1640.0
4 TraesCS7D01G108100 chr7B 92.147 2152 114 29 1043 3188 6626768 6624666 0.000000e+00 2987.0
5 TraesCS7D01G108100 chr7B 83.596 2670 336 66 228 2859 6403458 6400853 0.000000e+00 2410.0
6 TraesCS7D01G108100 chr7B 81.753 1962 287 54 750 2672 16514779 16516708 0.000000e+00 1574.0
7 TraesCS7D01G108100 chr7B 81.674 1959 287 52 754 2672 16707327 16709253 0.000000e+00 1563.0
8 TraesCS7D01G108100 chr7B 93.607 1048 53 5 1 1046 6655534 6654499 0.000000e+00 1552.0
9 TraesCS7D01G108100 chr7B 99.621 264 1 0 3185 3448 505223939 505223676 1.860000e-132 483.0
10 TraesCS7D01G108100 chr7B 95.858 169 6 1 3021 3188 6620736 6620568 4.380000e-69 272.0
11 TraesCS7D01G108100 chr7B 94.152 171 7 2 3021 3188 6623401 6623231 1.230000e-64 257.0
12 TraesCS7D01G108100 chr7A 82.260 1956 281 53 752 2672 78142717 78140793 0.000000e+00 1629.0
13 TraesCS7D01G108100 chr7A 81.986 1954 280 53 754 2672 77877151 77879067 0.000000e+00 1592.0
14 TraesCS7D01G108100 chr7A 83.827 1620 207 41 228 1810 68917308 68915707 0.000000e+00 1489.0
15 TraesCS7D01G108100 chr7A 83.391 1150 142 26 1897 3018 68915676 68914548 0.000000e+00 1020.0
16 TraesCS7D01G108100 chr7A 82.951 1003 127 34 1689 2672 77999698 78000675 0.000000e+00 865.0
17 TraesCS7D01G108100 chr4B 100.000 268 0 0 3181 3448 42253553 42253820 2.390000e-136 496.0
18 TraesCS7D01G108100 chr5D 100.000 264 0 0 3185 3448 468181654 468181391 4.000000e-134 488.0
19 TraesCS7D01G108100 chr5D 97.727 44 1 0 181 224 184674538 184674581 3.690000e-10 76.8
20 TraesCS7D01G108100 chr4D 100.000 264 0 0 3185 3448 505351066 505350803 4.000000e-134 488.0
21 TraesCS7D01G108100 chr4D 97.727 44 1 0 181 224 177442757 177442800 3.690000e-10 76.8
22 TraesCS7D01G108100 chr3A 100.000 264 0 0 3185 3448 690942462 690942725 4.000000e-134 488.0
23 TraesCS7D01G108100 chr3A 98.491 265 4 0 3184 3448 639229963 639229699 5.210000e-128 468.0
24 TraesCS7D01G108100 chr3A 98.851 261 3 0 3185 3445 640754263 640754523 1.870000e-127 466.0
25 TraesCS7D01G108100 chr2B 100.000 264 0 0 3185 3448 722637174 722636911 4.000000e-134 488.0
26 TraesCS7D01G108100 chr2B 97.727 44 1 0 181 224 272616092 272616135 3.690000e-10 76.8
27 TraesCS7D01G108100 chr3D 99.621 264 1 0 3185 3448 562178062 562177799 1.860000e-132 483.0
28 TraesCS7D01G108100 chr3D 97.727 44 1 0 181 224 48690506 48690549 3.690000e-10 76.8
29 TraesCS7D01G108100 chr3D 97.727 44 1 0 181 224 598873099 598873056 3.690000e-10 76.8
30 TraesCS7D01G108100 chr6B 97.727 44 1 0 181 224 621316955 621316912 3.690000e-10 76.8
31 TraesCS7D01G108100 chr2A 97.727 44 1 0 181 224 713025935 713025892 3.690000e-10 76.8
32 TraesCS7D01G108100 chr1A 97.727 44 1 0 181 224 167236653 167236696 3.690000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G108100 chr7D 64828100 64831547 3447 True 6368.0 6368 100.000000 1 3448 1 chr7D.!!$R2 3447
1 TraesCS7D01G108100 chr7D 64807839 64810370 2531 True 2423.0 2423 84.160000 228 2774 1 chr7D.!!$R1 2546
2 TraesCS7D01G108100 chr7D 73363089 73365007 1918 False 1661.0 1661 82.600000 754 2672 1 chr7D.!!$F1 1918
3 TraesCS7D01G108100 chr7D 73619193 73621118 1925 True 1640.0 1640 82.389000 752 2672 1 chr7D.!!$R3 1920
4 TraesCS7D01G108100 chr7B 6400853 6403458 2605 True 2410.0 2410 83.596000 228 2859 1 chr7B.!!$R1 2631
5 TraesCS7D01G108100 chr7B 16514779 16516708 1929 False 1574.0 1574 81.753000 750 2672 1 chr7B.!!$F1 1922
6 TraesCS7D01G108100 chr7B 16707327 16709253 1926 False 1563.0 1563 81.674000 754 2672 1 chr7B.!!$F2 1918
7 TraesCS7D01G108100 chr7B 6654499 6655534 1035 True 1552.0 1552 93.607000 1 1046 1 chr7B.!!$R2 1045
8 TraesCS7D01G108100 chr7B 6620568 6626768 6200 True 1172.0 2987 94.052333 1043 3188 3 chr7B.!!$R4 2145
9 TraesCS7D01G108100 chr7A 78140793 78142717 1924 True 1629.0 1629 82.260000 752 2672 1 chr7A.!!$R1 1920
10 TraesCS7D01G108100 chr7A 77877151 77879067 1916 False 1592.0 1592 81.986000 754 2672 1 chr7A.!!$F1 1918
11 TraesCS7D01G108100 chr7A 68914548 68917308 2760 True 1254.5 1489 83.609000 228 3018 2 chr7A.!!$R2 2790
12 TraesCS7D01G108100 chr7A 77999698 78000675 977 False 865.0 865 82.951000 1689 2672 1 chr7A.!!$F2 983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 1.804151 TCGCAAGTCAAATAGTGTGCC 59.196 47.619 0.00 0.00 39.48 5.01 F
1462 1492 0.467844 TCAACCAGTGCTTGCACCAT 60.468 50.000 20.39 5.31 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 2266 0.690192 TGGCTTGAAATCTGGGTCGA 59.310 50.0 0.0 0.0 0.00 4.20 R
3221 7400 0.031449 CGTGGGCGTGACCAATTTTT 59.969 50.0 0.0 0.0 43.34 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 7.922382 TCCCTCAAAATAGAGAAAGACAAGAT 58.078 34.615 0.00 0.00 37.87 2.40
266 267 1.804151 TCGCAAGTCAAATAGTGTGCC 59.196 47.619 0.00 0.00 39.48 5.01
288 289 7.329717 GTGCCCAATATTTCGACAAACATTAAA 59.670 33.333 0.00 0.00 0.00 1.52
299 300 9.853555 TTCGACAAACATTAAAATATGCTTCAT 57.146 25.926 0.00 0.00 0.00 2.57
352 353 6.891388 TGGCGTAGGTATATATATTTTGGGG 58.109 40.000 0.00 0.00 0.00 4.96
441 455 7.086376 TGACACTCCTAATTAAACACGTCTAC 58.914 38.462 0.00 0.00 0.00 2.59
475 489 1.812922 GTGTGCTCTGATGGAGGCG 60.813 63.158 0.00 0.00 42.08 5.52
501 515 8.202137 GGTGGCAATTTACTATAAGAGTAGTCA 58.798 37.037 0.00 0.00 41.75 3.41
545 559 4.556942 TTGTTGATATGCATGCACTAGC 57.443 40.909 25.37 18.43 42.57 3.42
622 636 6.926272 GCTAACCACTACTATCAAGATGGAAG 59.074 42.308 0.15 0.00 31.96 3.46
649 664 1.876799 TCCATGTGTTAGCAACAACCG 59.123 47.619 3.74 0.00 44.16 4.44
665 680 7.603404 AGCAACAACCGTGTTACACTATTATAA 59.397 33.333 13.86 0.00 46.47 0.98
747 763 6.975772 TGCAAGAGTTATGTTTTGGTTGTTAC 59.024 34.615 0.00 0.00 0.00 2.50
901 923 5.589831 TGCTATAAGTATCATGCCCTCCTA 58.410 41.667 0.00 0.00 0.00 2.94
1085 1111 4.999950 AGATTGGCTCAAGAACAACTACTG 59.000 41.667 0.00 0.00 0.00 2.74
1204 1230 2.431454 TGTATGTTGATCTTGCCGCAA 58.569 42.857 5.52 5.52 0.00 4.85
1226 1253 4.418973 AGATGCATATGCTTCAGTGTCT 57.581 40.909 32.96 19.47 44.66 3.41
1296 1323 1.174078 TGGATGGCCATGCGCATAAG 61.174 55.000 29.37 18.42 39.92 1.73
1324 1354 2.642254 TTGCAAGAGGCTGCCATGC 61.642 57.895 26.92 26.92 45.15 4.06
1357 1387 7.868415 CGGACTTTTTATTTGGTTGTCCATTAA 59.132 33.333 0.00 0.00 43.91 1.40
1430 1460 4.021102 ACAAGGTGGTGTTGGAGAATAG 57.979 45.455 0.00 0.00 0.00 1.73
1462 1492 0.467844 TCAACCAGTGCTTGCACCAT 60.468 50.000 20.39 5.31 0.00 3.55
1630 1666 9.754382 GCATTATGTGGATTTTCATTCTAATGT 57.246 29.630 2.80 0.00 37.65 2.71
1646 1684 3.982576 AATGTGACGGGAAGTTTGTTC 57.017 42.857 0.00 0.00 0.00 3.18
1773 1813 7.277396 TGTGCTTCCATAGTAAGTTAATACCC 58.723 38.462 0.00 0.00 0.00 3.69
1855 1896 7.807977 ATGAAGTTATGATCGCCAAGTATTT 57.192 32.000 0.00 0.00 0.00 1.40
1871 1916 8.416329 GCCAAGTATTTTCATGGTCTATTGATT 58.584 33.333 0.00 0.00 35.34 2.57
2011 2060 2.823154 GCACAAGGGCTAATGTTTGGTA 59.177 45.455 0.00 0.00 0.00 3.25
2145 2209 1.352017 TCTTTCTCCATGGCTTGAGCA 59.648 47.619 6.96 0.00 44.36 4.26
2190 2254 3.309954 GGACATATCAAAGCACTTCGTCC 59.690 47.826 0.00 0.00 34.19 4.79
2290 2354 2.995482 CTACCGCATCAACGACGC 59.005 61.111 0.00 0.00 34.06 5.19
2410 2474 3.181483 CCAAGCTTTGACTTGCAAACTCT 60.181 43.478 0.00 0.00 44.66 3.24
2454 2518 7.041098 CCATGAACAATATAGCCTAGTTTGGAC 60.041 40.741 0.00 0.00 0.00 4.02
2458 2523 5.104652 ACAATATAGCCTAGTTTGGACCGTT 60.105 40.000 0.00 0.00 0.00 4.44
2739 2813 8.893563 AGATTTGGTCCCTTGAATATAAAACA 57.106 30.769 0.00 0.00 0.00 2.83
2789 2863 1.341209 CAAACAAGTTTGGGCCCTCTC 59.659 52.381 25.70 12.82 44.47 3.20
2790 2864 0.178961 AACAAGTTTGGGCCCTCTCC 60.179 55.000 25.70 8.32 0.00 3.71
2986 3066 1.354337 CGCACGACATGGAGTGAAGG 61.354 60.000 21.81 9.56 40.56 3.46
2999 3079 0.606604 GTGAAGGTCTAGCAACCGGA 59.393 55.000 9.46 0.00 44.49 5.14
3059 4573 3.193479 CCCTGATTTTAAAGGGCTCACAC 59.807 47.826 0.00 0.00 46.63 3.82
3083 7262 2.205022 TTGAGGCTGTGGATTTGGAG 57.795 50.000 0.00 0.00 0.00 3.86
3125 7304 3.302344 CAACCTTTGGTGGGCCCG 61.302 66.667 19.37 2.61 35.34 6.13
3170 7349 0.748450 AGGAACCGACTTCGTGTGAA 59.252 50.000 0.00 0.00 37.74 3.18
3185 7364 0.667184 GTGAAGCGTGGGCATTTTGG 60.667 55.000 0.00 0.00 43.41 3.28
3188 7367 4.758251 GCGTGGGCATTTTGGGGC 62.758 66.667 0.00 0.00 39.62 5.80
3189 7368 2.996734 CGTGGGCATTTTGGGGCT 60.997 61.111 0.00 0.00 0.00 5.19
3190 7369 2.664398 GTGGGCATTTTGGGGCTG 59.336 61.111 0.00 0.00 0.00 4.85
3191 7370 2.203750 TGGGCATTTTGGGGCTGT 59.796 55.556 0.00 0.00 0.00 4.40
3192 7371 1.461075 TGGGCATTTTGGGGCTGTT 60.461 52.632 0.00 0.00 0.00 3.16
3193 7372 1.059006 TGGGCATTTTGGGGCTGTTT 61.059 50.000 0.00 0.00 0.00 2.83
3194 7373 0.606130 GGGCATTTTGGGGCTGTTTG 60.606 55.000 0.00 0.00 0.00 2.93
3195 7374 0.606130 GGCATTTTGGGGCTGTTTGG 60.606 55.000 0.00 0.00 0.00 3.28
3196 7375 0.396060 GCATTTTGGGGCTGTTTGGA 59.604 50.000 0.00 0.00 0.00 3.53
3197 7376 1.003464 GCATTTTGGGGCTGTTTGGAT 59.997 47.619 0.00 0.00 0.00 3.41
3198 7377 2.702261 CATTTTGGGGCTGTTTGGATG 58.298 47.619 0.00 0.00 0.00 3.51
3199 7378 1.055040 TTTTGGGGCTGTTTGGATGG 58.945 50.000 0.00 0.00 0.00 3.51
3200 7379 0.105246 TTTGGGGCTGTTTGGATGGT 60.105 50.000 0.00 0.00 0.00 3.55
3201 7380 0.831288 TTGGGGCTGTTTGGATGGTG 60.831 55.000 0.00 0.00 0.00 4.17
3202 7381 1.076549 GGGGCTGTTTGGATGGTGA 59.923 57.895 0.00 0.00 0.00 4.02
3203 7382 1.250840 GGGGCTGTTTGGATGGTGAC 61.251 60.000 0.00 0.00 0.00 3.67
3204 7383 1.250840 GGGCTGTTTGGATGGTGACC 61.251 60.000 0.00 0.00 0.00 4.02
3205 7384 0.539438 GGCTGTTTGGATGGTGACCA 60.539 55.000 6.84 6.84 38.19 4.02
3206 7385 1.327303 GCTGTTTGGATGGTGACCAA 58.673 50.000 9.06 0.00 44.27 3.67
3207 7386 1.000274 GCTGTTTGGATGGTGACCAAC 60.000 52.381 9.06 5.69 45.38 3.77
3208 7387 2.305928 CTGTTTGGATGGTGACCAACA 58.694 47.619 9.06 8.48 45.38 3.33
3209 7388 2.028130 TGTTTGGATGGTGACCAACAC 58.972 47.619 9.06 0.76 45.38 3.32
3210 7389 2.306847 GTTTGGATGGTGACCAACACT 58.693 47.619 9.06 0.00 45.38 3.55
3211 7390 3.117851 TGTTTGGATGGTGACCAACACTA 60.118 43.478 9.06 0.00 45.38 2.74
3212 7391 3.502211 GTTTGGATGGTGACCAACACTAG 59.498 47.826 9.06 0.00 45.38 2.57
3213 7392 4.059644 TTTGGATGGTGACCAACACTAGC 61.060 47.826 9.06 0.00 45.38 3.42
3219 7398 2.696506 GTGACCAACACTAGCCTTACC 58.303 52.381 0.00 0.00 45.13 2.85
3220 7399 2.038033 GTGACCAACACTAGCCTTACCA 59.962 50.000 0.00 0.00 45.13 3.25
3221 7400 2.706723 TGACCAACACTAGCCTTACCAA 59.293 45.455 0.00 0.00 0.00 3.67
3222 7401 3.136809 TGACCAACACTAGCCTTACCAAA 59.863 43.478 0.00 0.00 0.00 3.28
3223 7402 4.139038 GACCAACACTAGCCTTACCAAAA 58.861 43.478 0.00 0.00 0.00 2.44
3224 7403 4.538738 ACCAACACTAGCCTTACCAAAAA 58.461 39.130 0.00 0.00 0.00 1.94
3239 7418 3.978460 AAAAATTGGTCACGCCCAC 57.022 47.368 0.00 0.00 33.14 4.61
3241 7420 0.820074 AAAATTGGTCACGCCCACGA 60.820 50.000 0.00 0.00 43.93 4.35
3242 7421 0.608035 AAATTGGTCACGCCCACGAT 60.608 50.000 0.00 0.00 43.93 3.73
3243 7422 0.250793 AATTGGTCACGCCCACGATA 59.749 50.000 0.00 0.00 43.93 2.92
3244 7423 0.468226 ATTGGTCACGCCCACGATAT 59.532 50.000 0.00 0.00 43.93 1.63
3245 7424 0.250793 TTGGTCACGCCCACGATATT 59.749 50.000 0.00 0.00 43.93 1.28
3246 7425 0.250793 TGGTCACGCCCACGATATTT 59.749 50.000 0.00 0.00 43.93 1.40
3247 7426 0.655733 GGTCACGCCCACGATATTTG 59.344 55.000 0.00 0.00 43.93 2.32
3248 7427 0.655733 GTCACGCCCACGATATTTGG 59.344 55.000 0.00 0.00 43.93 3.28
3249 7428 1.092921 TCACGCCCACGATATTTGGC 61.093 55.000 0.00 0.00 43.93 4.52
3250 7429 1.095228 CACGCCCACGATATTTGGCT 61.095 55.000 0.00 0.00 43.93 4.75
3251 7430 0.466543 ACGCCCACGATATTTGGCTA 59.533 50.000 0.00 0.00 43.93 3.93
3252 7431 1.148310 CGCCCACGATATTTGGCTAG 58.852 55.000 0.00 0.00 43.93 3.42
3253 7432 0.875059 GCCCACGATATTTGGCTAGC 59.125 55.000 6.04 6.04 40.77 3.42
3254 7433 1.148310 CCCACGATATTTGGCTAGCG 58.852 55.000 9.00 0.00 36.62 4.26
3255 7434 1.540363 CCCACGATATTTGGCTAGCGT 60.540 52.381 9.00 0.00 43.80 5.07
3256 7435 2.210116 CCACGATATTTGGCTAGCGTT 58.790 47.619 9.00 0.00 40.49 4.84
3257 7436 2.612212 CCACGATATTTGGCTAGCGTTT 59.388 45.455 9.00 0.00 40.49 3.60
3258 7437 3.546020 CCACGATATTTGGCTAGCGTTTG 60.546 47.826 9.00 0.00 40.49 2.93
3259 7438 2.612212 ACGATATTTGGCTAGCGTTTGG 59.388 45.455 9.00 0.00 40.49 3.28
3260 7439 2.612212 CGATATTTGGCTAGCGTTTGGT 59.388 45.455 9.00 0.00 0.00 3.67
3261 7440 3.303132 CGATATTTGGCTAGCGTTTGGTC 60.303 47.826 9.00 2.40 0.00 4.02
3262 7441 2.200373 ATTTGGCTAGCGTTTGGTCT 57.800 45.000 9.00 0.00 0.00 3.85
3263 7442 1.234821 TTTGGCTAGCGTTTGGTCTG 58.765 50.000 9.00 0.00 0.00 3.51
3264 7443 0.605319 TTGGCTAGCGTTTGGTCTGG 60.605 55.000 9.00 0.00 0.00 3.86
3265 7444 1.003718 GGCTAGCGTTTGGTCTGGT 60.004 57.895 9.00 0.00 0.00 4.00
3266 7445 0.248289 GGCTAGCGTTTGGTCTGGTA 59.752 55.000 9.00 0.00 0.00 3.25
3267 7446 1.356938 GCTAGCGTTTGGTCTGGTAC 58.643 55.000 0.00 0.00 0.00 3.34
3279 7458 3.850122 GTCTGGTACCATTTTTGGCTC 57.150 47.619 16.75 0.00 0.00 4.70
3280 7459 2.161609 GTCTGGTACCATTTTTGGCTCG 59.838 50.000 16.75 0.00 0.00 5.03
3281 7460 0.885196 TGGTACCATTTTTGGCTCGC 59.115 50.000 11.60 0.00 0.00 5.03
3282 7461 0.172578 GGTACCATTTTTGGCTCGCC 59.827 55.000 7.15 0.00 0.00 5.54
3283 7462 0.885196 GTACCATTTTTGGCTCGCCA 59.115 50.000 6.52 6.52 45.63 5.69
3284 7463 1.476488 GTACCATTTTTGGCTCGCCAT 59.524 47.619 12.00 0.00 46.64 4.40
3285 7464 0.532115 ACCATTTTTGGCTCGCCATC 59.468 50.000 12.00 0.00 46.64 3.51
3286 7465 0.526096 CCATTTTTGGCTCGCCATCG 60.526 55.000 12.00 0.00 46.64 3.84
3287 7466 0.171007 CATTTTTGGCTCGCCATCGT 59.829 50.000 12.00 0.00 46.64 3.73
3288 7467 0.451783 ATTTTTGGCTCGCCATCGTC 59.548 50.000 12.00 0.00 46.64 4.20
3289 7468 1.906994 TTTTTGGCTCGCCATCGTCG 61.907 55.000 12.00 0.00 46.64 5.12
3290 7469 2.773397 TTTTGGCTCGCCATCGTCGA 62.773 55.000 12.00 0.00 46.64 4.20
3291 7470 3.982372 TTGGCTCGCCATCGTCGAC 62.982 63.158 12.00 5.18 46.64 4.20
3292 7471 4.194720 GGCTCGCCATCGTCGACT 62.195 66.667 14.70 0.00 36.96 4.18
3293 7472 2.202623 GCTCGCCATCGTCGACTT 60.203 61.111 14.70 0.00 36.96 3.01
3294 7473 2.508891 GCTCGCCATCGTCGACTTG 61.509 63.158 14.70 10.87 36.96 3.16
3295 7474 1.874019 CTCGCCATCGTCGACTTGG 60.874 63.158 23.09 23.09 36.96 3.61
3296 7475 2.885644 CGCCATCGTCGACTTGGG 60.886 66.667 26.34 19.22 0.00 4.12
3297 7476 3.195698 GCCATCGTCGACTTGGGC 61.196 66.667 26.34 23.52 0.00 5.36
3298 7477 2.885644 CCATCGTCGACTTGGGCG 60.886 66.667 20.84 5.64 0.00 6.13
3299 7478 3.554692 CATCGTCGACTTGGGCGC 61.555 66.667 14.70 0.00 0.00 6.53
3316 7495 4.138109 CGCCCGCGTACCGTTTTC 62.138 66.667 4.92 0.00 34.38 2.29
3317 7496 4.138109 GCCCGCGTACCGTTTTCG 62.138 66.667 4.92 0.00 43.67 3.46
3318 7497 4.138109 CCCGCGTACCGTTTTCGC 62.138 66.667 4.92 0.00 45.28 4.70
3319 7498 4.138109 CCGCGTACCGTTTTCGCC 62.138 66.667 4.92 0.00 45.85 5.54
3320 7499 3.404707 CGCGTACCGTTTTCGCCA 61.405 61.111 0.00 0.00 45.85 5.69
3321 7500 2.937486 GCGTACCGTTTTCGCCAA 59.063 55.556 0.00 0.00 43.41 4.52
3322 7501 1.439201 GCGTACCGTTTTCGCCAAC 60.439 57.895 0.00 0.00 43.41 3.77
3323 7502 1.834458 GCGTACCGTTTTCGCCAACT 61.834 55.000 0.00 0.00 43.41 3.16
3324 7503 0.162294 CGTACCGTTTTCGCCAACTC 59.838 55.000 0.00 0.00 42.58 3.01
3325 7504 0.162294 GTACCGTTTTCGCCAACTCG 59.838 55.000 0.00 0.00 42.58 4.18
3326 7505 1.559149 TACCGTTTTCGCCAACTCGC 61.559 55.000 0.00 0.00 42.58 5.03
3348 7527 4.020378 GAAACAGCGGCGCGGAAA 62.020 61.111 36.69 0.00 0.00 3.13
3349 7528 3.322706 GAAACAGCGGCGCGGAAAT 62.323 57.895 36.69 21.52 0.00 2.17
3350 7529 3.322706 AAACAGCGGCGCGGAAATC 62.323 57.895 36.69 4.48 0.00 2.17
3352 7531 4.228097 CAGCGGCGCGGAAATCAG 62.228 66.667 27.59 6.23 0.00 2.90
3360 7539 3.273048 CGGAAATCAGCCGCCAAA 58.727 55.556 0.00 0.00 42.55 3.28
3361 7540 1.583986 CGGAAATCAGCCGCCAAAA 59.416 52.632 0.00 0.00 42.55 2.44
3362 7541 0.173255 CGGAAATCAGCCGCCAAAAT 59.827 50.000 0.00 0.00 42.55 1.82
3363 7542 1.403679 CGGAAATCAGCCGCCAAAATA 59.596 47.619 0.00 0.00 42.55 1.40
3364 7543 2.034558 CGGAAATCAGCCGCCAAAATAT 59.965 45.455 0.00 0.00 42.55 1.28
3365 7544 3.490761 CGGAAATCAGCCGCCAAAATATT 60.491 43.478 0.00 0.00 42.55 1.28
3366 7545 3.803778 GGAAATCAGCCGCCAAAATATTG 59.196 43.478 0.00 0.00 36.25 1.90
3400 7579 4.457496 CGAGCCAGCCACCGTGAT 62.457 66.667 0.00 0.00 0.00 3.06
3401 7580 2.900273 GAGCCAGCCACCGTGATA 59.100 61.111 0.00 0.00 0.00 2.15
3402 7581 1.447643 GAGCCAGCCACCGTGATAT 59.552 57.895 0.00 0.00 0.00 1.63
3403 7582 0.679505 GAGCCAGCCACCGTGATATA 59.320 55.000 0.00 0.00 0.00 0.86
3404 7583 1.070134 GAGCCAGCCACCGTGATATAA 59.930 52.381 0.00 0.00 0.00 0.98
3405 7584 1.488812 AGCCAGCCACCGTGATATAAA 59.511 47.619 0.00 0.00 0.00 1.40
3406 7585 2.092646 AGCCAGCCACCGTGATATAAAA 60.093 45.455 0.00 0.00 0.00 1.52
3407 7586 2.290641 GCCAGCCACCGTGATATAAAAG 59.709 50.000 0.00 0.00 0.00 2.27
3408 7587 2.878406 CCAGCCACCGTGATATAAAAGG 59.122 50.000 0.00 0.00 0.00 3.11
3409 7588 2.290641 CAGCCACCGTGATATAAAAGGC 59.709 50.000 0.00 0.00 41.08 4.35
3410 7589 2.092646 AGCCACCGTGATATAAAAGGCA 60.093 45.455 0.00 0.00 43.13 4.75
3411 7590 2.032924 GCCACCGTGATATAAAAGGCAC 59.967 50.000 0.00 0.00 40.50 5.01
3421 7600 8.856490 GTGATATAAAAGGCACGATTGATTTT 57.144 30.769 0.00 0.00 31.66 1.82
3422 7601 9.301153 GTGATATAAAAGGCACGATTGATTTTT 57.699 29.630 0.00 0.00 30.28 1.94
3423 7602 9.515020 TGATATAAAAGGCACGATTGATTTTTC 57.485 29.630 0.00 0.00 30.28 2.29
3424 7603 8.871686 ATATAAAAGGCACGATTGATTTTTCC 57.128 30.769 0.00 0.00 30.28 3.13
3425 7604 3.592898 AAGGCACGATTGATTTTTCCC 57.407 42.857 0.00 0.00 0.00 3.97
3426 7605 1.824852 AGGCACGATTGATTTTTCCCC 59.175 47.619 0.00 0.00 0.00 4.81
3427 7606 1.548269 GGCACGATTGATTTTTCCCCA 59.452 47.619 0.00 0.00 0.00 4.96
3428 7607 2.606108 GCACGATTGATTTTTCCCCAC 58.394 47.619 0.00 0.00 0.00 4.61
3429 7608 2.673893 GCACGATTGATTTTTCCCCACC 60.674 50.000 0.00 0.00 0.00 4.61
3430 7609 2.825532 CACGATTGATTTTTCCCCACCT 59.174 45.455 0.00 0.00 0.00 4.00
3431 7610 2.825532 ACGATTGATTTTTCCCCACCTG 59.174 45.455 0.00 0.00 0.00 4.00
3432 7611 2.825532 CGATTGATTTTTCCCCACCTGT 59.174 45.455 0.00 0.00 0.00 4.00
3433 7612 3.258123 CGATTGATTTTTCCCCACCTGTT 59.742 43.478 0.00 0.00 0.00 3.16
3434 7613 4.618227 CGATTGATTTTTCCCCACCTGTTC 60.618 45.833 0.00 0.00 0.00 3.18
3435 7614 2.235016 TGATTTTTCCCCACCTGTTCG 58.765 47.619 0.00 0.00 0.00 3.95
3436 7615 0.966179 ATTTTTCCCCACCTGTTCGC 59.034 50.000 0.00 0.00 0.00 4.70
3437 7616 1.110518 TTTTTCCCCACCTGTTCGCC 61.111 55.000 0.00 0.00 0.00 5.54
3438 7617 2.285889 TTTTCCCCACCTGTTCGCCA 62.286 55.000 0.00 0.00 0.00 5.69
3439 7618 2.969300 TTTCCCCACCTGTTCGCCAC 62.969 60.000 0.00 0.00 0.00 5.01
3440 7619 3.953775 CCCCACCTGTTCGCCACT 61.954 66.667 0.00 0.00 0.00 4.00
3441 7620 2.113139 CCCACCTGTTCGCCACTT 59.887 61.111 0.00 0.00 0.00 3.16
3442 7621 1.528309 CCCACCTGTTCGCCACTTT 60.528 57.895 0.00 0.00 0.00 2.66
3443 7622 1.515521 CCCACCTGTTCGCCACTTTC 61.516 60.000 0.00 0.00 0.00 2.62
3444 7623 1.515521 CCACCTGTTCGCCACTTTCC 61.516 60.000 0.00 0.00 0.00 3.13
3445 7624 1.228154 ACCTGTTCGCCACTTTCCC 60.228 57.895 0.00 0.00 0.00 3.97
3446 7625 1.971695 CCTGTTCGCCACTTTCCCC 60.972 63.158 0.00 0.00 0.00 4.81
3447 7626 1.228124 CTGTTCGCCACTTTCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.047891 TGCACTATACAAGCTTTAGCACTTAT 58.952 34.615 0.00 0.40 45.16 1.73
39 40 9.408648 ACCTTAATTTAATGCACTATACAAGCT 57.591 29.630 0.00 0.00 0.00 3.74
133 134 9.103861 CTTGTCTTTCTCTATTTTGAGGGATAC 57.896 37.037 0.00 0.00 34.98 2.24
310 311 8.417106 CCTACGCCAGATATATGAGTCATTAAT 58.583 37.037 11.68 5.30 0.00 1.40
330 331 7.713942 CCTTCCCCAAAATATATATACCTACGC 59.286 40.741 0.00 0.00 0.00 4.42
411 425 7.227910 ACGTGTTTAATTAGGAGTGTCATTGTT 59.772 33.333 0.00 0.00 0.00 2.83
441 455 6.685828 CAGAGCACACAAAATTCTATCAATCG 59.314 38.462 0.00 0.00 0.00 3.34
475 489 8.202137 TGACTACTCTTATAGTAAATTGCCACC 58.798 37.037 0.00 0.00 40.21 4.61
501 515 3.140895 ACATGGCCCCAATTCTTATAGCT 59.859 43.478 0.00 0.00 0.00 3.32
545 559 5.880332 TGTAGCTAGGCTCAATTTTAACCTG 59.120 40.000 0.00 0.00 40.44 4.00
546 560 6.062258 TGTAGCTAGGCTCAATTTTAACCT 57.938 37.500 0.00 0.00 40.44 3.50
547 561 6.768381 AGATGTAGCTAGGCTCAATTTTAACC 59.232 38.462 0.00 0.00 40.44 2.85
622 636 4.036262 TGTTGCTAACACATGGAAGTCAAC 59.964 41.667 0.00 5.04 36.25 3.18
901 923 4.019501 AGTGCCTGAATGAAGAAGATGAGT 60.020 41.667 0.00 0.00 0.00 3.41
982 1008 4.207891 TCATGGTAGAAACTTGAGGCTC 57.792 45.455 7.79 7.79 0.00 4.70
1034 1060 0.118346 TCTTGCCCCCTCTACCTCAA 59.882 55.000 0.00 0.00 0.00 3.02
1102 1128 8.985315 ATCTCATGCTTCTTGTTTATTCCATA 57.015 30.769 0.00 0.00 0.00 2.74
1155 1181 1.171308 CCTGTTGCATGGTCTTCCTG 58.829 55.000 0.00 0.00 34.23 3.86
1204 1230 4.778579 AGACACTGAAGCATATGCATCTT 58.221 39.130 27.67 15.77 45.16 2.40
1226 1253 5.784023 TGGTACCATGGTATTCCTTCTCTA 58.216 41.667 27.03 7.31 32.82 2.43
1296 1323 1.268079 GCCTCTTGCAACCAGAAGTTC 59.732 52.381 0.00 0.00 40.77 3.01
1324 1354 5.838529 ACCAAATAAAAAGTCCGTTCCTTG 58.161 37.500 0.00 0.00 0.00 3.61
1357 1387 3.758554 GTGTCCATGGTTTGCATACTCTT 59.241 43.478 12.58 0.00 0.00 2.85
1393 1423 2.166459 CCTTGTTCTGCTCTACCATCGA 59.834 50.000 0.00 0.00 0.00 3.59
1462 1492 1.045911 GTCCAAAACCCCTTGGCACA 61.046 55.000 0.00 0.00 44.79 4.57
1630 1666 6.702716 AAATAAAGAACAAACTTCCCGTCA 57.297 33.333 0.00 0.00 0.00 4.35
1773 1813 3.139077 AGTTTTAAGGACAAGCGTCAGG 58.861 45.455 0.00 0.00 44.54 3.86
2113 2177 6.302269 CCATGGAGAAAGAGCCTACAATAAT 58.698 40.000 5.56 0.00 0.00 1.28
2145 2209 0.746063 CATTTGCCACGGCCACATAT 59.254 50.000 2.24 0.00 41.09 1.78
2190 2254 2.092538 TCTGGGTCGAAGTCCTACTAGG 60.093 54.545 0.00 0.00 35.62 3.02
2202 2266 0.690192 TGGCTTGAAATCTGGGTCGA 59.310 50.000 0.00 0.00 0.00 4.20
2290 2354 0.379669 GTTGGCATCATTGAGCTCCG 59.620 55.000 12.15 0.00 0.00 4.63
2306 2370 5.105756 GGTACTCTTCATTTTCCATGGGTTG 60.106 44.000 13.02 4.93 0.00 3.77
2326 2390 2.683362 GCTTGCCAGGAGTTAATGGTAC 59.317 50.000 0.00 0.00 38.91 3.34
2410 2474 3.201353 TGGTGACAAATGGACTCGAAA 57.799 42.857 0.00 0.00 37.44 3.46
2454 2518 4.981794 ACTCTTTTCTTCAACAACAACGG 58.018 39.130 0.00 0.00 0.00 4.44
2458 2523 9.095065 GACTACTAACTCTTTTCTTCAACAACA 57.905 33.333 0.00 0.00 0.00 3.33
2624 2695 6.316140 TGACTCTCCAACACATATGCAAATAC 59.684 38.462 1.58 0.00 0.00 1.89
2675 2747 8.712228 AGTTGAGGGTCAAAAATAGAATCTTT 57.288 30.769 0.00 0.00 38.22 2.52
2789 2863 2.978018 GAAGCCGCCTTTGTTCCGG 61.978 63.158 0.00 0.00 44.58 5.14
2790 2864 1.515521 AAGAAGCCGCCTTTGTTCCG 61.516 55.000 0.00 0.00 0.00 4.30
2814 2889 1.876799 CAGCCAAAACCACGTCACATA 59.123 47.619 0.00 0.00 0.00 2.29
2879 2954 1.154413 GCGCACAAGTGTTCGATGG 60.154 57.895 0.30 0.00 36.84 3.51
2986 3066 0.739561 ATCTCGTCCGGTTGCTAGAC 59.260 55.000 0.00 0.00 0.00 2.59
2999 3079 2.839486 ATGTGTGAACACCATCTCGT 57.161 45.000 10.92 0.00 45.88 4.18
3019 3099 5.458595 TCAGGGAGCATAGTGATTTAGAGA 58.541 41.667 0.00 0.00 0.00 3.10
3059 4573 0.107017 AATCCACAGCCTCAATCGGG 60.107 55.000 0.00 0.00 0.00 5.14
3083 7262 3.807622 TCAGTCAAAATCGAAGGACACAC 59.192 43.478 10.41 0.00 32.79 3.82
3125 7304 0.591170 TGTTCAGCGCTTACAAAGGC 59.409 50.000 17.28 0.24 0.00 4.35
3139 7318 1.452801 GGTTCCTCCGGGTTGTTCA 59.547 57.895 0.00 0.00 0.00 3.18
3170 7349 2.996734 CCCCAAAATGCCCACGCT 60.997 61.111 0.00 0.00 35.36 5.07
3185 7364 1.250840 GGTCACCATCCAAACAGCCC 61.251 60.000 0.00 0.00 0.00 5.19
3188 7367 2.034558 GTGTTGGTCACCATCCAAACAG 59.965 50.000 0.00 0.00 44.91 3.16
3189 7368 2.028130 GTGTTGGTCACCATCCAAACA 58.972 47.619 0.00 0.00 44.91 2.83
3190 7369 2.793278 GTGTTGGTCACCATCCAAAC 57.207 50.000 0.00 0.00 44.91 2.93
3199 7378 2.038033 TGGTAAGGCTAGTGTTGGTCAC 59.962 50.000 0.00 0.00 46.46 3.67
3200 7379 2.331166 TGGTAAGGCTAGTGTTGGTCA 58.669 47.619 0.00 0.00 0.00 4.02
3201 7380 3.412237 TTGGTAAGGCTAGTGTTGGTC 57.588 47.619 0.00 0.00 0.00 4.02
3202 7381 3.868619 TTTGGTAAGGCTAGTGTTGGT 57.131 42.857 0.00 0.00 0.00 3.67
3221 7400 0.031449 CGTGGGCGTGACCAATTTTT 59.969 50.000 0.00 0.00 43.34 1.94
3222 7401 0.820074 TCGTGGGCGTGACCAATTTT 60.820 50.000 0.00 0.00 43.34 1.82
3223 7402 0.608035 ATCGTGGGCGTGACCAATTT 60.608 50.000 0.00 0.00 43.34 1.82
3224 7403 0.250793 TATCGTGGGCGTGACCAATT 59.749 50.000 0.00 0.00 43.34 2.32
3225 7404 0.468226 ATATCGTGGGCGTGACCAAT 59.532 50.000 0.00 0.00 43.34 3.16
3226 7405 0.250793 AATATCGTGGGCGTGACCAA 59.749 50.000 0.00 0.00 43.34 3.67
3227 7406 0.250793 AAATATCGTGGGCGTGACCA 59.749 50.000 0.00 0.00 42.05 4.02
3228 7407 0.655733 CAAATATCGTGGGCGTGACC 59.344 55.000 0.00 0.00 39.49 4.02
3229 7408 0.655733 CCAAATATCGTGGGCGTGAC 59.344 55.000 0.00 0.00 39.49 3.67
3230 7409 1.092921 GCCAAATATCGTGGGCGTGA 61.093 55.000 7.35 0.00 36.58 4.35
3231 7410 1.355210 GCCAAATATCGTGGGCGTG 59.645 57.895 7.35 0.00 36.58 5.34
3232 7411 3.821995 GCCAAATATCGTGGGCGT 58.178 55.556 7.35 0.00 36.58 5.68
3234 7413 0.875059 GCTAGCCAAATATCGTGGGC 59.125 55.000 2.29 0.00 46.77 5.36
3235 7414 1.148310 CGCTAGCCAAATATCGTGGG 58.852 55.000 9.66 0.00 36.58 4.61
3236 7415 1.865865 ACGCTAGCCAAATATCGTGG 58.134 50.000 9.66 1.70 39.33 4.94
3237 7416 3.546020 CCAAACGCTAGCCAAATATCGTG 60.546 47.826 9.66 0.00 28.85 4.35
3238 7417 2.612212 CCAAACGCTAGCCAAATATCGT 59.388 45.455 9.66 0.00 0.00 3.73
3239 7418 2.612212 ACCAAACGCTAGCCAAATATCG 59.388 45.455 9.66 0.00 0.00 2.92
3240 7419 3.877508 AGACCAAACGCTAGCCAAATATC 59.122 43.478 9.66 0.83 0.00 1.63
3241 7420 3.627577 CAGACCAAACGCTAGCCAAATAT 59.372 43.478 9.66 0.00 0.00 1.28
3242 7421 3.006940 CAGACCAAACGCTAGCCAAATA 58.993 45.455 9.66 0.00 0.00 1.40
3243 7422 1.812571 CAGACCAAACGCTAGCCAAAT 59.187 47.619 9.66 0.00 0.00 2.32
3244 7423 1.234821 CAGACCAAACGCTAGCCAAA 58.765 50.000 9.66 0.00 0.00 3.28
3245 7424 0.605319 CCAGACCAAACGCTAGCCAA 60.605 55.000 9.66 0.00 0.00 4.52
3246 7425 1.003839 CCAGACCAAACGCTAGCCA 60.004 57.895 9.66 0.00 0.00 4.75
3247 7426 0.248289 TACCAGACCAAACGCTAGCC 59.752 55.000 9.66 0.00 0.00 3.93
3248 7427 1.356938 GTACCAGACCAAACGCTAGC 58.643 55.000 4.06 4.06 0.00 3.42
3259 7438 2.161609 CGAGCCAAAAATGGTACCAGAC 59.838 50.000 21.41 0.00 0.00 3.51
3260 7439 2.432444 CGAGCCAAAAATGGTACCAGA 58.568 47.619 21.41 0.00 0.00 3.86
3261 7440 1.135402 GCGAGCCAAAAATGGTACCAG 60.135 52.381 21.41 6.47 0.00 4.00
3262 7441 0.885196 GCGAGCCAAAAATGGTACCA 59.115 50.000 18.99 18.99 0.00 3.25
3263 7442 0.172578 GGCGAGCCAAAAATGGTACC 59.827 55.000 9.58 4.43 35.81 3.34
3264 7443 0.885196 TGGCGAGCCAAAAATGGTAC 59.115 50.000 15.24 0.00 44.12 3.34
3265 7444 3.348151 TGGCGAGCCAAAAATGGTA 57.652 47.368 15.24 0.00 44.12 3.25
3266 7445 4.189539 TGGCGAGCCAAAAATGGT 57.810 50.000 15.24 0.00 44.12 3.55
3275 7454 3.701604 AAGTCGACGATGGCGAGCC 62.702 63.158 10.46 7.26 41.64 4.70
3276 7455 2.202623 AAGTCGACGATGGCGAGC 60.203 61.111 10.46 0.00 41.64 5.03
3277 7456 1.874019 CCAAGTCGACGATGGCGAG 60.874 63.158 24.22 7.09 41.64 5.03
3278 7457 2.180769 CCAAGTCGACGATGGCGA 59.819 61.111 24.22 0.00 41.64 5.54
3279 7458 2.885644 CCCAAGTCGACGATGGCG 60.886 66.667 28.00 20.22 44.79 5.69
3280 7459 3.195698 GCCCAAGTCGACGATGGC 61.196 66.667 28.00 25.57 32.71 4.40
3281 7460 2.885644 CGCCCAAGTCGACGATGG 60.886 66.667 27.02 27.02 0.00 3.51
3282 7461 3.554692 GCGCCCAAGTCGACGATG 61.555 66.667 10.46 13.19 0.00 3.84
3306 7485 0.162294 CGAGTTGGCGAAAACGGTAC 59.838 55.000 0.00 0.00 35.13 3.34
3307 7486 1.559149 GCGAGTTGGCGAAAACGGTA 61.559 55.000 9.59 0.00 35.13 4.02
3308 7487 2.888998 GCGAGTTGGCGAAAACGGT 61.889 57.895 9.59 0.00 35.13 4.83
3309 7488 2.127383 GCGAGTTGGCGAAAACGG 60.127 61.111 9.59 0.00 35.13 4.44
3331 7510 3.322706 ATTTCCGCGCCGCTGTTTC 62.323 57.895 7.78 0.00 0.00 2.78
3332 7511 3.322706 GATTTCCGCGCCGCTGTTT 62.323 57.895 7.78 0.00 0.00 2.83
3333 7512 3.799755 GATTTCCGCGCCGCTGTT 61.800 61.111 7.78 0.00 0.00 3.16
3335 7514 4.228097 CTGATTTCCGCGCCGCTG 62.228 66.667 7.78 0.00 0.00 5.18
3344 7523 3.733443 ATATTTTGGCGGCTGATTTCC 57.267 42.857 11.43 0.00 0.00 3.13
3345 7524 3.803778 CCAATATTTTGGCGGCTGATTTC 59.196 43.478 11.43 0.00 45.71 2.17
3346 7525 3.795877 CCAATATTTTGGCGGCTGATTT 58.204 40.909 11.43 0.00 45.71 2.17
3347 7526 3.457610 CCAATATTTTGGCGGCTGATT 57.542 42.857 11.43 0.00 45.71 2.57
3356 7535 6.428992 CCAGATTTGGCAGCCAATATTTTGG 61.429 44.000 27.89 22.55 45.45 3.28
3357 7536 4.573201 CCAGATTTGGCAGCCAATATTTTG 59.427 41.667 27.89 18.44 43.55 2.44
3358 7537 4.773013 CCAGATTTGGCAGCCAATATTTT 58.227 39.130 27.89 10.35 43.55 1.82
3359 7538 4.411256 CCAGATTTGGCAGCCAATATTT 57.589 40.909 27.89 15.19 43.55 1.40
3383 7562 2.369257 ATATCACGGTGGCTGGCTCG 62.369 60.000 8.50 13.57 0.00 5.03
3384 7563 0.679505 TATATCACGGTGGCTGGCTC 59.320 55.000 8.50 0.00 0.00 4.70
3385 7564 1.128200 TTATATCACGGTGGCTGGCT 58.872 50.000 8.50 0.00 0.00 4.75
3386 7565 1.961793 TTTATATCACGGTGGCTGGC 58.038 50.000 8.50 0.00 0.00 4.85
3387 7566 2.878406 CCTTTTATATCACGGTGGCTGG 59.122 50.000 8.50 0.00 0.00 4.85
3388 7567 2.290641 GCCTTTTATATCACGGTGGCTG 59.709 50.000 8.50 0.00 36.52 4.85
3389 7568 2.092646 TGCCTTTTATATCACGGTGGCT 60.093 45.455 8.50 0.00 39.77 4.75
3390 7569 2.032924 GTGCCTTTTATATCACGGTGGC 59.967 50.000 8.50 0.72 39.53 5.01
3391 7570 2.286833 CGTGCCTTTTATATCACGGTGG 59.713 50.000 8.50 0.00 45.76 4.61
3392 7571 3.585748 CGTGCCTTTTATATCACGGTG 57.414 47.619 0.56 0.56 45.76 4.94
3396 7575 8.856490 AAAATCAATCGTGCCTTTTATATCAC 57.144 30.769 0.00 0.00 0.00 3.06
3397 7576 9.515020 GAAAAATCAATCGTGCCTTTTATATCA 57.485 29.630 0.00 0.00 0.00 2.15
3398 7577 8.968242 GGAAAAATCAATCGTGCCTTTTATATC 58.032 33.333 0.00 0.00 0.00 1.63
3399 7578 7.926018 GGGAAAAATCAATCGTGCCTTTTATAT 59.074 33.333 0.00 0.00 0.00 0.86
3400 7579 7.262048 GGGAAAAATCAATCGTGCCTTTTATA 58.738 34.615 0.00 0.00 0.00 0.98
3401 7580 6.106003 GGGAAAAATCAATCGTGCCTTTTAT 58.894 36.000 0.00 0.00 0.00 1.40
3402 7581 5.474825 GGGAAAAATCAATCGTGCCTTTTA 58.525 37.500 0.00 0.00 0.00 1.52
3403 7582 4.314961 GGGAAAAATCAATCGTGCCTTTT 58.685 39.130 0.00 0.00 0.00 2.27
3404 7583 3.306710 GGGGAAAAATCAATCGTGCCTTT 60.307 43.478 0.00 0.00 0.00 3.11
3405 7584 2.233676 GGGGAAAAATCAATCGTGCCTT 59.766 45.455 0.00 0.00 0.00 4.35
3406 7585 1.824852 GGGGAAAAATCAATCGTGCCT 59.175 47.619 0.00 0.00 0.00 4.75
3407 7586 1.548269 TGGGGAAAAATCAATCGTGCC 59.452 47.619 0.00 0.00 0.00 5.01
3408 7587 2.606108 GTGGGGAAAAATCAATCGTGC 58.394 47.619 0.00 0.00 0.00 5.34
3409 7588 2.825532 AGGTGGGGAAAAATCAATCGTG 59.174 45.455 0.00 0.00 0.00 4.35
3410 7589 2.825532 CAGGTGGGGAAAAATCAATCGT 59.174 45.455 0.00 0.00 0.00 3.73
3411 7590 2.825532 ACAGGTGGGGAAAAATCAATCG 59.174 45.455 0.00 0.00 0.00 3.34
3412 7591 4.618227 CGAACAGGTGGGGAAAAATCAATC 60.618 45.833 0.00 0.00 0.00 2.67
3413 7592 3.258123 CGAACAGGTGGGGAAAAATCAAT 59.742 43.478 0.00 0.00 0.00 2.57
3414 7593 2.625790 CGAACAGGTGGGGAAAAATCAA 59.374 45.455 0.00 0.00 0.00 2.57
3415 7594 2.235016 CGAACAGGTGGGGAAAAATCA 58.765 47.619 0.00 0.00 0.00 2.57
3416 7595 1.067846 GCGAACAGGTGGGGAAAAATC 60.068 52.381 0.00 0.00 0.00 2.17
3417 7596 0.966179 GCGAACAGGTGGGGAAAAAT 59.034 50.000 0.00 0.00 0.00 1.82
3418 7597 1.110518 GGCGAACAGGTGGGGAAAAA 61.111 55.000 0.00 0.00 0.00 1.94
3419 7598 1.529713 GGCGAACAGGTGGGGAAAA 60.530 57.895 0.00 0.00 0.00 2.29
3420 7599 2.114411 GGCGAACAGGTGGGGAAA 59.886 61.111 0.00 0.00 0.00 3.13
3421 7600 3.172106 TGGCGAACAGGTGGGGAA 61.172 61.111 0.00 0.00 0.00 3.97
3422 7601 3.948719 GTGGCGAACAGGTGGGGA 61.949 66.667 0.00 0.00 0.00 4.81
3423 7602 2.976494 AAAGTGGCGAACAGGTGGGG 62.976 60.000 0.00 0.00 0.00 4.96
3424 7603 1.515521 GAAAGTGGCGAACAGGTGGG 61.516 60.000 0.00 0.00 0.00 4.61
3425 7604 1.515521 GGAAAGTGGCGAACAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
3426 7605 1.515521 GGGAAAGTGGCGAACAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
3427 7606 1.228154 GGGAAAGTGGCGAACAGGT 60.228 57.895 0.00 0.00 0.00 4.00
3428 7607 1.971695 GGGGAAAGTGGCGAACAGG 60.972 63.158 0.00 0.00 0.00 4.00
3429 7608 1.228124 TGGGGAAAGTGGCGAACAG 60.228 57.895 0.00 0.00 0.00 3.16
3430 7609 2.919839 TGGGGAAAGTGGCGAACA 59.080 55.556 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.