Multiple sequence alignment - TraesCS7D01G107900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G107900 chr7D 100.000 3410 0 0 1 3410 64741274 64737865 0.000000e+00 6298.0
1 TraesCS7D01G107900 chr7D 77.695 269 45 13 2943 3204 18068301 18068561 2.120000e-32 150.0
2 TraesCS7D01G107900 chr7D 79.592 98 11 5 150 239 566545524 566545428 1.020000e-05 62.1
3 TraesCS7D01G107900 chr7A 92.761 2086 102 20 543 2611 68906555 68904502 0.000000e+00 2970.0
4 TraesCS7D01G107900 chr7A 78.884 502 63 25 2947 3410 68903683 68903187 1.990000e-77 300.0
5 TraesCS7D01G107900 chr7A 89.571 163 9 2 2396 2550 20565480 20565642 2.080000e-47 200.0
6 TraesCS7D01G107900 chr7A 97.872 47 1 0 2315 2361 20565253 20565299 7.840000e-12 82.4
7 TraesCS7D01G107900 chr7B 93.522 1976 88 20 470 2436 6395868 6393924 0.000000e+00 2904.0
8 TraesCS7D01G107900 chr7B 85.185 351 39 7 2604 2946 6393429 6393084 7.000000e-92 348.0
9 TraesCS7D01G107900 chr7B 78.558 513 54 23 2943 3410 6392948 6392447 1.550000e-73 287.0
10 TraesCS7D01G107900 chr7B 87.755 147 16 2 2467 2611 6393925 6393779 1.630000e-38 171.0
11 TraesCS7D01G107900 chr7B 78.616 159 21 9 131 282 50626993 50626841 3.620000e-15 93.5
12 TraesCS7D01G107900 chr7B 93.023 43 1 2 70 112 603616207 603616247 1.020000e-05 62.1
13 TraesCS7D01G107900 chr6D 83.716 872 119 9 928 1794 205266375 205265522 0.000000e+00 802.0
14 TraesCS7D01G107900 chr6D 76.256 219 35 8 2938 3140 20028306 20028523 2.170000e-17 100.0
15 TraesCS7D01G107900 chr6D 82.500 80 11 3 75 154 445703187 445703111 2.200000e-07 67.6
16 TraesCS7D01G107900 chr3D 83.527 862 119 9 938 1794 155092476 155091633 0.000000e+00 784.0
17 TraesCS7D01G107900 chr3D 76.471 153 27 7 1 151 13596827 13596972 1.310000e-09 75.0
18 TraesCS7D01G107900 chr3D 95.349 43 2 0 20 62 335663937 335663895 6.110000e-08 69.4
19 TraesCS7D01G107900 chr3D 95.349 43 1 1 131 173 562643135 562643176 2.200000e-07 67.6
20 TraesCS7D01G107900 chr3D 92.105 38 2 1 144 181 469372115 469372079 6.000000e-03 52.8
21 TraesCS7D01G107900 chr4D 88.358 481 39 10 1019 1493 6078666 6079135 2.300000e-156 562.0
22 TraesCS7D01G107900 chr4D 82.680 306 35 11 1489 1794 6082915 6083202 4.370000e-64 255.0
23 TraesCS7D01G107900 chr4D 100.000 33 0 0 2596 2628 93850348 93850316 1.020000e-05 62.1
24 TraesCS7D01G107900 chr4B 86.139 404 55 1 906 1309 527985811 527985409 5.230000e-118 435.0
25 TraesCS7D01G107900 chr4B 79.286 280 35 18 2943 3204 587013111 587013385 1.260000e-39 174.0
26 TraesCS7D01G107900 chr4B 90.400 125 10 2 1295 1418 10704848 10704971 2.720000e-36 163.0
27 TraesCS7D01G107900 chr4B 85.859 99 14 0 1311 1409 52988765 52988667 4.650000e-19 106.0
28 TraesCS7D01G107900 chr3B 87.464 351 42 1 908 1256 83311774 83312124 1.470000e-108 403.0
29 TraesCS7D01G107900 chr3B 80.000 90 11 6 2545 2629 547120781 547120694 3.670000e-05 60.2
30 TraesCS7D01G107900 chr5A 90.761 184 16 1 1231 1414 708638378 708638560 9.450000e-61 244.0
31 TraesCS7D01G107900 chr5A 90.741 54 3 2 2943 2994 631369366 631369313 1.700000e-08 71.3
32 TraesCS7D01G107900 chr2B 80.882 272 35 11 2943 3202 321693177 321693443 7.460000e-47 198.0
33 TraesCS7D01G107900 chr2A 80.727 275 35 11 2943 3204 356718755 356718486 7.460000e-47 198.0
34 TraesCS7D01G107900 chr2A 80.909 110 12 5 137 238 607872781 607872673 1.010000e-10 78.7
35 TraesCS7D01G107900 chr2A 89.286 56 2 4 2957 3010 624446241 624446188 2.200000e-07 67.6
36 TraesCS7D01G107900 chr2A 80.460 87 11 6 2545 2627 164381024 164380940 1.020000e-05 62.1
37 TraesCS7D01G107900 chr2A 100.000 28 0 0 2602 2629 734597118 734597091 6.000000e-03 52.8
38 TraesCS7D01G107900 chr6B 87.857 140 17 0 1203 1342 114054476 114054337 7.570000e-37 165.0
39 TraesCS7D01G107900 chr6B 85.000 80 11 1 188 267 716445814 716445736 2.820000e-11 80.5
40 TraesCS7D01G107900 chr4A 78.467 274 35 14 2943 3203 490594762 490594500 1.270000e-34 158.0
41 TraesCS7D01G107900 chr4A 100.000 28 0 0 205 232 648308022 648307995 6.000000e-03 52.8
42 TraesCS7D01G107900 chr2D 79.237 236 26 9 2943 3160 285350313 285350083 3.550000e-30 143.0
43 TraesCS7D01G107900 chr2D 84.615 91 11 3 3239 3328 557712437 557712349 1.690000e-13 87.9
44 TraesCS7D01G107900 chr2D 91.379 58 3 2 3024 3081 18630384 18630329 1.010000e-10 78.7
45 TraesCS7D01G107900 chr3A 84.028 144 22 1 1200 1342 468721150 468721007 1.650000e-28 137.0
46 TraesCS7D01G107900 chr3A 79.012 162 18 8 2943 3093 711206147 711206303 2.800000e-16 97.1
47 TraesCS7D01G107900 chr3A 84.722 72 7 4 76 146 201528913 201528981 6.110000e-08 69.4
48 TraesCS7D01G107900 chr3A 92.308 39 3 0 133 171 653848025 653847987 4.750000e-04 56.5
49 TraesCS7D01G107900 chr5D 81.818 99 12 6 2535 2629 60082027 60081931 1.010000e-10 78.7
50 TraesCS7D01G107900 chr5D 97.222 36 0 1 2596 2630 548626889 548626854 3.670000e-05 60.2
51 TraesCS7D01G107900 chr1D 89.362 47 3 2 144 190 360892566 360892522 1.320000e-04 58.4
52 TraesCS7D01G107900 chr1A 94.737 38 1 1 2595 2631 137413155 137413192 1.320000e-04 58.4
53 TraesCS7D01G107900 chr1A 80.000 85 10 6 2550 2629 343414886 343414968 4.750000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G107900 chr7D 64737865 64741274 3409 True 6298.0 6298 100.0000 1 3410 1 chr7D.!!$R1 3409
1 TraesCS7D01G107900 chr7A 68903187 68906555 3368 True 1635.0 2970 85.8225 543 3410 2 chr7A.!!$R1 2867
2 TraesCS7D01G107900 chr7B 6392447 6395868 3421 True 927.5 2904 86.2550 470 3410 4 chr7B.!!$R2 2940
3 TraesCS7D01G107900 chr6D 205265522 205266375 853 True 802.0 802 83.7160 928 1794 1 chr6D.!!$R1 866
4 TraesCS7D01G107900 chr3D 155091633 155092476 843 True 784.0 784 83.5270 938 1794 1 chr3D.!!$R1 856
5 TraesCS7D01G107900 chr4D 6078666 6083202 4536 False 408.5 562 85.5190 1019 1794 2 chr4D.!!$F1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.027586 CGCTATTTTTCCTTCCGCGG 59.972 55.0 22.12 22.12 35.95 6.46 F
380 381 0.039074 CTTCGGTGTGTCTCGAGCTT 60.039 55.0 7.81 0.00 36.72 3.74 F
382 383 0.318699 TCGGTGTGTCTCGAGCTTTG 60.319 55.0 7.81 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 5847 1.294780 CGCTTGCTCTTCCTGACCT 59.705 57.895 0.00 0.0 0.00 3.85 R
2389 6209 0.690762 TACAGTTTCCCCACTGAGGC 59.309 55.000 7.82 0.0 46.29 4.70 R
2418 6238 1.197910 CCGGACGAATTTCTAGCGAC 58.802 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.230603 ATGAGAAGCATGGCCGTG 57.769 55.556 21.33 21.33 35.42 4.94
46 47 2.117156 ATGAGAAGCATGGCCGTGC 61.117 57.895 37.83 37.83 45.38 5.34
56 57 2.347490 GGCCGTGCCTCTCAGAAA 59.653 61.111 7.58 0.00 46.69 2.52
57 58 2.035442 GGCCGTGCCTCTCAGAAAC 61.035 63.158 7.58 0.00 46.69 2.78
58 59 2.383527 GCCGTGCCTCTCAGAAACG 61.384 63.158 0.00 0.00 0.00 3.60
59 60 1.289066 CCGTGCCTCTCAGAAACGA 59.711 57.895 5.92 0.00 36.38 3.85
60 61 0.319555 CCGTGCCTCTCAGAAACGAA 60.320 55.000 5.92 0.00 36.38 3.85
61 62 1.497991 CGTGCCTCTCAGAAACGAAA 58.502 50.000 0.00 0.00 36.38 3.46
62 63 2.069273 CGTGCCTCTCAGAAACGAAAT 58.931 47.619 0.00 0.00 36.38 2.17
63 64 2.159787 CGTGCCTCTCAGAAACGAAATG 60.160 50.000 0.00 0.00 36.38 2.32
64 65 1.806542 TGCCTCTCAGAAACGAAATGC 59.193 47.619 0.00 0.00 0.00 3.56
85 86 1.495509 TTTTTCCGCGAGATGCACG 59.504 52.632 8.23 0.00 46.97 5.34
86 87 1.906994 TTTTTCCGCGAGATGCACGG 61.907 55.000 8.23 6.36 46.97 4.94
102 103 2.347490 GGCTGTGCCTCTCGGAAA 59.653 61.111 0.73 0.00 46.69 3.13
103 104 2.035442 GGCTGTGCCTCTCGGAAAC 61.035 63.158 0.73 0.00 46.69 2.78
104 105 1.301716 GCTGTGCCTCTCGGAAACA 60.302 57.895 0.00 0.00 0.00 2.83
105 106 1.294659 GCTGTGCCTCTCGGAAACAG 61.295 60.000 9.13 9.13 43.77 3.16
106 107 0.318441 CTGTGCCTCTCGGAAACAGA 59.682 55.000 8.21 0.00 43.70 3.41
107 108 0.756294 TGTGCCTCTCGGAAACAGAA 59.244 50.000 0.00 0.00 0.00 3.02
108 109 1.140052 TGTGCCTCTCGGAAACAGAAA 59.860 47.619 0.00 0.00 0.00 2.52
109 110 2.218603 GTGCCTCTCGGAAACAGAAAA 58.781 47.619 0.00 0.00 0.00 2.29
110 111 2.616842 GTGCCTCTCGGAAACAGAAAAA 59.383 45.455 0.00 0.00 0.00 1.94
149 150 1.892209 TTTTTCCTTCCGTGAGAGGC 58.108 50.000 0.00 0.00 0.00 4.70
150 151 0.762418 TTTTCCTTCCGTGAGAGGCA 59.238 50.000 0.00 0.00 0.00 4.75
151 152 0.984230 TTTCCTTCCGTGAGAGGCAT 59.016 50.000 0.00 0.00 0.00 4.40
152 153 0.250234 TTCCTTCCGTGAGAGGCATG 59.750 55.000 0.00 0.00 0.00 4.06
183 184 2.920640 GGAAACGGAAAATACGCGC 58.079 52.632 5.73 0.00 34.00 6.86
184 185 0.445043 GGAAACGGAAAATACGCGCT 59.555 50.000 5.73 0.00 34.00 5.92
185 186 1.660104 GGAAACGGAAAATACGCGCTA 59.340 47.619 5.73 0.00 34.00 4.26
186 187 2.286025 GGAAACGGAAAATACGCGCTAT 59.714 45.455 5.73 0.03 34.00 2.97
187 188 3.242511 GGAAACGGAAAATACGCGCTATT 60.243 43.478 5.73 7.07 34.00 1.73
188 189 4.336932 GAAACGGAAAATACGCGCTATTT 58.663 39.130 5.73 12.87 36.72 1.40
189 190 4.345271 AACGGAAAATACGCGCTATTTT 57.655 36.364 25.45 25.45 44.48 1.82
190 191 4.345271 ACGGAAAATACGCGCTATTTTT 57.655 36.364 25.70 18.46 42.68 1.94
191 192 4.336932 ACGGAAAATACGCGCTATTTTTC 58.663 39.130 25.70 23.91 42.68 2.29
192 193 3.722289 CGGAAAATACGCGCTATTTTTCC 59.278 43.478 28.98 28.98 42.68 3.13
193 194 4.495184 CGGAAAATACGCGCTATTTTTCCT 60.495 41.667 31.87 17.30 42.68 3.36
194 195 5.337554 GGAAAATACGCGCTATTTTTCCTT 58.662 37.500 30.18 15.67 42.68 3.36
195 196 5.454554 GGAAAATACGCGCTATTTTTCCTTC 59.545 40.000 30.18 20.10 42.68 3.46
196 197 4.547406 AATACGCGCTATTTTTCCTTCC 57.453 40.909 5.73 0.00 0.00 3.46
197 198 0.725117 ACGCGCTATTTTTCCTTCCG 59.275 50.000 5.73 0.00 0.00 4.30
198 199 0.588980 CGCGCTATTTTTCCTTCCGC 60.589 55.000 5.56 0.00 36.93 5.54
199 200 0.588980 GCGCTATTTTTCCTTCCGCG 60.589 55.000 0.00 0.00 41.74 6.46
200 201 0.027586 CGCTATTTTTCCTTCCGCGG 59.972 55.000 22.12 22.12 35.95 6.46
201 202 1.375551 GCTATTTTTCCTTCCGCGGA 58.624 50.000 27.28 27.28 0.00 5.54
202 203 1.741145 GCTATTTTTCCTTCCGCGGAA 59.259 47.619 36.44 36.44 41.16 4.30
205 206 3.663202 TTTCCTTCCGCGGAAAGC 58.337 55.556 37.62 0.00 45.52 3.51
206 207 1.228003 TTTCCTTCCGCGGAAAGCA 60.228 52.632 37.62 22.65 45.52 3.91
207 208 1.512156 TTTCCTTCCGCGGAAAGCAC 61.512 55.000 37.62 0.00 45.52 4.40
215 216 4.458164 CGGAAAGCACGGATTTGC 57.542 55.556 0.00 0.00 43.34 3.68
222 223 2.712077 GCACGGATTTGCTTTCACG 58.288 52.632 0.00 0.00 39.59 4.35
223 224 0.237235 GCACGGATTTGCTTTCACGA 59.763 50.000 0.00 0.00 39.59 4.35
224 225 1.725931 GCACGGATTTGCTTTCACGAG 60.726 52.381 0.00 0.00 39.59 4.18
225 226 1.798223 CACGGATTTGCTTTCACGAGA 59.202 47.619 0.00 0.00 0.00 4.04
226 227 2.069273 ACGGATTTGCTTTCACGAGAG 58.931 47.619 0.00 0.00 0.00 3.20
227 228 1.394917 CGGATTTGCTTTCACGAGAGG 59.605 52.381 0.00 0.00 0.00 3.69
228 229 1.131315 GGATTTGCTTTCACGAGAGGC 59.869 52.381 0.00 0.00 0.00 4.70
229 230 1.806542 GATTTGCTTTCACGAGAGGCA 59.193 47.619 8.05 8.05 34.29 4.75
230 231 1.896220 TTTGCTTTCACGAGAGGCAT 58.104 45.000 11.64 0.00 35.43 4.40
231 232 1.159285 TTGCTTTCACGAGAGGCATG 58.841 50.000 11.64 0.00 35.43 4.06
232 233 0.674581 TGCTTTCACGAGAGGCATGG 60.675 55.000 8.05 0.00 32.29 3.66
233 234 1.986575 GCTTTCACGAGAGGCATGGC 61.987 60.000 12.14 12.14 0.00 4.40
234 235 0.392193 CTTTCACGAGAGGCATGGCT 60.392 55.000 23.58 23.58 0.00 4.75
235 236 0.674581 TTTCACGAGAGGCATGGCTG 60.675 55.000 28.55 15.01 0.00 4.85
236 237 1.830587 TTCACGAGAGGCATGGCTGT 61.831 55.000 28.55 23.97 0.00 4.40
237 238 2.104859 CACGAGAGGCATGGCTGTG 61.105 63.158 28.55 23.08 0.00 3.66
238 239 3.200593 CGAGAGGCATGGCTGTGC 61.201 66.667 28.55 12.59 44.31 4.57
248 249 2.436109 GGCTGTGCCTCCCAGAAA 59.564 61.111 0.73 0.00 46.69 2.52
249 250 1.973812 GGCTGTGCCTCCCAGAAAC 60.974 63.158 0.73 0.00 46.69 2.78
250 251 1.228245 GCTGTGCCTCCCAGAAACA 60.228 57.895 0.00 0.00 31.38 2.83
251 252 1.239968 GCTGTGCCTCCCAGAAACAG 61.240 60.000 0.00 0.00 40.93 3.16
252 253 0.397941 CTGTGCCTCCCAGAAACAGA 59.602 55.000 0.00 0.00 40.54 3.41
253 254 0.843309 TGTGCCTCCCAGAAACAGAA 59.157 50.000 0.00 0.00 0.00 3.02
254 255 1.214175 TGTGCCTCCCAGAAACAGAAA 59.786 47.619 0.00 0.00 0.00 2.52
255 256 2.306847 GTGCCTCCCAGAAACAGAAAA 58.693 47.619 0.00 0.00 0.00 2.29
256 257 2.693074 GTGCCTCCCAGAAACAGAAAAA 59.307 45.455 0.00 0.00 0.00 1.94
277 278 5.629348 AAAATGTGTTTTTAACTTCCGCG 57.371 34.783 0.00 0.00 35.75 6.46
278 279 4.555348 AATGTGTTTTTAACTTCCGCGA 57.445 36.364 8.23 0.00 0.00 5.87
279 280 3.595709 TGTGTTTTTAACTTCCGCGAG 57.404 42.857 8.23 0.00 0.00 5.03
280 281 3.196463 TGTGTTTTTAACTTCCGCGAGA 58.804 40.909 8.23 0.00 0.00 4.04
281 282 3.246699 TGTGTTTTTAACTTCCGCGAGAG 59.753 43.478 8.23 7.50 0.00 3.20
282 283 2.803956 TGTTTTTAACTTCCGCGAGAGG 59.196 45.455 8.23 6.41 0.00 3.69
283 284 1.435577 TTTTAACTTCCGCGAGAGGC 58.564 50.000 8.23 0.00 38.69 4.70
284 285 0.319083 TTTAACTTCCGCGAGAGGCA 59.681 50.000 8.23 0.00 43.84 4.75
285 286 0.389426 TTAACTTCCGCGAGAGGCAC 60.389 55.000 8.23 0.00 43.84 5.01
286 287 2.537792 TAACTTCCGCGAGAGGCACG 62.538 60.000 8.23 0.00 43.84 5.34
305 306 2.967599 GGCCTTGCCTTTAGGAAATG 57.032 50.000 0.00 0.00 46.69 2.32
306 307 2.456577 GGCCTTGCCTTTAGGAAATGA 58.543 47.619 0.00 0.00 46.69 2.57
307 308 2.831526 GGCCTTGCCTTTAGGAAATGAA 59.168 45.455 0.00 0.00 46.69 2.57
308 309 3.260632 GGCCTTGCCTTTAGGAAATGAAA 59.739 43.478 0.00 0.00 46.69 2.69
309 310 4.262851 GGCCTTGCCTTTAGGAAATGAAAA 60.263 41.667 0.00 0.00 46.69 2.29
310 311 5.304778 GCCTTGCCTTTAGGAAATGAAAAA 58.695 37.500 0.00 0.00 37.39 1.94
348 349 5.646577 TTTTTCTTTTTCCAACCACGAGA 57.353 34.783 0.00 0.00 0.00 4.04
349 350 4.893424 TTTCTTTTTCCAACCACGAGAG 57.107 40.909 0.00 0.00 0.00 3.20
350 351 2.846193 TCTTTTTCCAACCACGAGAGG 58.154 47.619 0.00 0.00 0.00 3.69
351 352 2.171870 TCTTTTTCCAACCACGAGAGGT 59.828 45.455 0.00 0.00 45.91 3.85
352 353 3.388676 TCTTTTTCCAACCACGAGAGGTA 59.611 43.478 0.00 0.00 42.25 3.08
353 354 2.825861 TTTCCAACCACGAGAGGTAC 57.174 50.000 0.00 0.00 42.25 3.34
354 355 1.707106 TTCCAACCACGAGAGGTACA 58.293 50.000 0.00 0.00 42.25 2.90
355 356 1.254026 TCCAACCACGAGAGGTACAG 58.746 55.000 0.00 0.00 42.25 2.74
356 357 0.966920 CCAACCACGAGAGGTACAGT 59.033 55.000 0.00 0.00 42.25 3.55
357 358 1.343465 CCAACCACGAGAGGTACAGTT 59.657 52.381 0.00 0.00 42.25 3.16
358 359 2.224209 CCAACCACGAGAGGTACAGTTT 60.224 50.000 0.00 0.00 42.25 2.66
359 360 3.463944 CAACCACGAGAGGTACAGTTTT 58.536 45.455 0.00 0.00 42.25 2.43
360 361 3.107642 ACCACGAGAGGTACAGTTTTG 57.892 47.619 0.00 0.00 40.98 2.44
361 362 1.798813 CCACGAGAGGTACAGTTTTGC 59.201 52.381 0.00 0.00 0.00 3.68
362 363 2.548067 CCACGAGAGGTACAGTTTTGCT 60.548 50.000 0.00 0.00 0.00 3.91
363 364 3.131396 CACGAGAGGTACAGTTTTGCTT 58.869 45.455 0.00 0.00 0.00 3.91
364 365 3.184581 CACGAGAGGTACAGTTTTGCTTC 59.815 47.826 0.00 0.00 0.00 3.86
365 366 2.408704 CGAGAGGTACAGTTTTGCTTCG 59.591 50.000 0.00 0.00 0.00 3.79
366 367 2.737252 GAGAGGTACAGTTTTGCTTCGG 59.263 50.000 0.00 0.00 0.00 4.30
367 368 2.104281 AGAGGTACAGTTTTGCTTCGGT 59.896 45.455 0.00 0.00 0.00 4.69
368 369 2.218603 AGGTACAGTTTTGCTTCGGTG 58.781 47.619 0.00 0.00 0.00 4.94
369 370 1.944709 GGTACAGTTTTGCTTCGGTGT 59.055 47.619 0.00 0.00 0.00 4.16
370 371 2.286772 GGTACAGTTTTGCTTCGGTGTG 60.287 50.000 0.00 0.00 0.00 3.82
371 372 1.459450 ACAGTTTTGCTTCGGTGTGT 58.541 45.000 0.00 0.00 0.00 3.72
372 373 1.400494 ACAGTTTTGCTTCGGTGTGTC 59.600 47.619 0.00 0.00 0.00 3.67
373 374 1.670811 CAGTTTTGCTTCGGTGTGTCT 59.329 47.619 0.00 0.00 0.00 3.41
374 375 1.940613 AGTTTTGCTTCGGTGTGTCTC 59.059 47.619 0.00 0.00 0.00 3.36
375 376 0.934496 TTTTGCTTCGGTGTGTCTCG 59.066 50.000 0.00 0.00 0.00 4.04
376 377 0.103390 TTTGCTTCGGTGTGTCTCGA 59.897 50.000 0.00 0.00 0.00 4.04
377 378 0.318699 TTGCTTCGGTGTGTCTCGAG 60.319 55.000 5.93 5.93 36.72 4.04
378 379 2.089349 GCTTCGGTGTGTCTCGAGC 61.089 63.158 7.81 3.58 36.72 5.03
379 380 1.581954 CTTCGGTGTGTCTCGAGCT 59.418 57.895 7.81 0.00 36.72 4.09
380 381 0.039074 CTTCGGTGTGTCTCGAGCTT 60.039 55.000 7.81 0.00 36.72 3.74
381 382 0.387929 TTCGGTGTGTCTCGAGCTTT 59.612 50.000 7.81 0.00 36.72 3.51
382 383 0.318699 TCGGTGTGTCTCGAGCTTTG 60.319 55.000 7.81 0.00 0.00 2.77
383 384 0.318699 CGGTGTGTCTCGAGCTTTGA 60.319 55.000 7.81 0.00 0.00 2.69
384 385 1.670087 CGGTGTGTCTCGAGCTTTGAT 60.670 52.381 7.81 0.00 0.00 2.57
385 386 1.728971 GGTGTGTCTCGAGCTTTGATG 59.271 52.381 7.81 0.00 0.00 3.07
386 387 2.610479 GGTGTGTCTCGAGCTTTGATGA 60.610 50.000 7.81 0.00 0.00 2.92
387 388 3.059884 GTGTGTCTCGAGCTTTGATGAA 58.940 45.455 7.81 0.00 0.00 2.57
388 389 3.494626 GTGTGTCTCGAGCTTTGATGAAA 59.505 43.478 7.81 0.00 0.00 2.69
389 390 4.153117 GTGTGTCTCGAGCTTTGATGAAAT 59.847 41.667 7.81 0.00 0.00 2.17
390 391 4.756642 TGTGTCTCGAGCTTTGATGAAATT 59.243 37.500 7.81 0.00 0.00 1.82
391 392 5.239306 TGTGTCTCGAGCTTTGATGAAATTT 59.761 36.000 7.81 0.00 0.00 1.82
392 393 5.566774 GTGTCTCGAGCTTTGATGAAATTTG 59.433 40.000 7.81 0.00 0.00 2.32
393 394 4.556523 GTCTCGAGCTTTGATGAAATTTGC 59.443 41.667 7.81 0.00 0.00 3.68
394 395 4.216042 TCTCGAGCTTTGATGAAATTTGCA 59.784 37.500 7.81 0.00 0.00 4.08
395 396 4.229096 TCGAGCTTTGATGAAATTTGCAC 58.771 39.130 0.00 0.00 0.00 4.57
396 397 3.365820 CGAGCTTTGATGAAATTTGCACC 59.634 43.478 0.00 0.00 0.00 5.01
397 398 4.309099 GAGCTTTGATGAAATTTGCACCA 58.691 39.130 0.00 0.00 0.00 4.17
398 399 4.312443 AGCTTTGATGAAATTTGCACCAG 58.688 39.130 0.00 0.00 0.00 4.00
399 400 4.039488 AGCTTTGATGAAATTTGCACCAGA 59.961 37.500 0.00 0.00 0.00 3.86
400 401 4.151157 GCTTTGATGAAATTTGCACCAGAC 59.849 41.667 0.00 0.00 0.00 3.51
401 402 5.534207 TTTGATGAAATTTGCACCAGACT 57.466 34.783 0.00 0.00 0.00 3.24
402 403 4.771590 TGATGAAATTTGCACCAGACTC 57.228 40.909 0.00 0.00 0.00 3.36
403 404 4.401022 TGATGAAATTTGCACCAGACTCT 58.599 39.130 0.00 0.00 0.00 3.24
404 405 4.828939 TGATGAAATTTGCACCAGACTCTT 59.171 37.500 0.00 0.00 0.00 2.85
405 406 6.003326 TGATGAAATTTGCACCAGACTCTTA 58.997 36.000 0.00 0.00 0.00 2.10
406 407 5.947228 TGAAATTTGCACCAGACTCTTAG 57.053 39.130 0.00 0.00 0.00 2.18
407 408 5.620206 TGAAATTTGCACCAGACTCTTAGA 58.380 37.500 0.00 0.00 0.00 2.10
408 409 6.240894 TGAAATTTGCACCAGACTCTTAGAT 58.759 36.000 0.00 0.00 0.00 1.98
409 410 6.716628 TGAAATTTGCACCAGACTCTTAGATT 59.283 34.615 0.00 0.00 0.00 2.40
410 411 7.231317 TGAAATTTGCACCAGACTCTTAGATTT 59.769 33.333 0.00 0.00 0.00 2.17
411 412 6.749923 ATTTGCACCAGACTCTTAGATTTC 57.250 37.500 0.00 0.00 0.00 2.17
412 413 4.207891 TGCACCAGACTCTTAGATTTCC 57.792 45.455 0.00 0.00 0.00 3.13
413 414 3.055094 TGCACCAGACTCTTAGATTTCCC 60.055 47.826 0.00 0.00 0.00 3.97
414 415 3.198853 GCACCAGACTCTTAGATTTCCCT 59.801 47.826 0.00 0.00 0.00 4.20
415 416 4.682050 GCACCAGACTCTTAGATTTCCCTC 60.682 50.000 0.00 0.00 0.00 4.30
416 417 4.467795 CACCAGACTCTTAGATTTCCCTCA 59.532 45.833 0.00 0.00 0.00 3.86
417 418 4.714308 ACCAGACTCTTAGATTTCCCTCAG 59.286 45.833 0.00 0.00 0.00 3.35
418 419 4.100808 CCAGACTCTTAGATTTCCCTCAGG 59.899 50.000 0.00 0.00 0.00 3.86
419 420 4.959210 CAGACTCTTAGATTTCCCTCAGGA 59.041 45.833 0.00 0.00 41.88 3.86
420 421 5.602145 CAGACTCTTAGATTTCCCTCAGGAT 59.398 44.000 0.00 0.00 43.54 3.24
421 422 6.780031 CAGACTCTTAGATTTCCCTCAGGATA 59.220 42.308 0.00 0.00 43.54 2.59
422 423 7.454380 CAGACTCTTAGATTTCCCTCAGGATAT 59.546 40.741 0.00 0.00 43.54 1.63
423 424 8.016054 AGACTCTTAGATTTCCCTCAGGATATT 58.984 37.037 0.00 0.00 43.54 1.28
424 425 9.315363 GACTCTTAGATTTCCCTCAGGATATTA 57.685 37.037 0.00 0.00 43.54 0.98
425 426 9.095700 ACTCTTAGATTTCCCTCAGGATATTAC 57.904 37.037 0.00 0.00 43.54 1.89
426 427 9.320295 CTCTTAGATTTCCCTCAGGATATTACT 57.680 37.037 0.00 0.00 43.54 2.24
427 428 9.315363 TCTTAGATTTCCCTCAGGATATTACTC 57.685 37.037 0.00 0.00 43.54 2.59
428 429 6.597832 AGATTTCCCTCAGGATATTACTCG 57.402 41.667 0.00 0.00 43.54 4.18
429 430 5.482175 AGATTTCCCTCAGGATATTACTCGG 59.518 44.000 0.00 0.00 43.54 4.63
430 431 3.170991 TCCCTCAGGATATTACTCGGG 57.829 52.381 0.00 0.00 37.19 5.14
431 432 2.720254 TCCCTCAGGATATTACTCGGGA 59.280 50.000 0.00 9.27 37.19 5.14
432 433 2.826725 CCCTCAGGATATTACTCGGGAC 59.173 54.545 0.00 0.00 33.47 4.46
433 434 3.497332 CCTCAGGATATTACTCGGGACA 58.503 50.000 0.00 0.00 0.00 4.02
434 435 4.090090 CCTCAGGATATTACTCGGGACAT 58.910 47.826 0.00 0.00 0.00 3.06
435 436 5.262009 CCTCAGGATATTACTCGGGACATA 58.738 45.833 0.00 0.00 0.00 2.29
436 437 5.715279 CCTCAGGATATTACTCGGGACATAA 59.285 44.000 0.00 0.00 0.00 1.90
437 438 6.381420 CCTCAGGATATTACTCGGGACATAAT 59.619 42.308 0.00 0.00 0.00 1.28
438 439 7.093289 CCTCAGGATATTACTCGGGACATAATT 60.093 40.741 0.00 0.00 0.00 1.40
439 440 7.837863 TCAGGATATTACTCGGGACATAATTC 58.162 38.462 0.00 0.00 0.00 2.17
440 441 7.674348 TCAGGATATTACTCGGGACATAATTCT 59.326 37.037 0.00 0.00 0.00 2.40
441 442 7.761704 CAGGATATTACTCGGGACATAATTCTG 59.238 40.741 0.00 0.00 0.00 3.02
442 443 7.042335 GGATATTACTCGGGACATAATTCTGG 58.958 42.308 0.00 0.00 0.00 3.86
443 444 2.622064 ACTCGGGACATAATTCTGGC 57.378 50.000 0.00 0.00 0.00 4.85
444 445 1.837439 ACTCGGGACATAATTCTGGCA 59.163 47.619 0.00 0.00 0.00 4.92
445 446 2.238646 ACTCGGGACATAATTCTGGCAA 59.761 45.455 0.00 0.00 0.00 4.52
446 447 2.874701 CTCGGGACATAATTCTGGCAAG 59.125 50.000 0.00 0.00 0.00 4.01
447 448 2.238646 TCGGGACATAATTCTGGCAAGT 59.761 45.455 0.00 0.00 0.00 3.16
448 449 3.016736 CGGGACATAATTCTGGCAAGTT 58.983 45.455 0.00 0.00 0.00 2.66
449 450 3.181497 CGGGACATAATTCTGGCAAGTTG 60.181 47.826 0.00 0.00 0.00 3.16
450 451 3.429410 GGGACATAATTCTGGCAAGTTGC 60.429 47.826 19.87 19.87 44.08 4.17
451 452 3.445096 GGACATAATTCTGGCAAGTTGCT 59.555 43.478 26.16 8.92 44.28 3.91
452 453 4.640201 GGACATAATTCTGGCAAGTTGCTA 59.360 41.667 26.16 20.17 44.28 3.49
461 462 4.451629 TGGCAAGTTGCTAGAGTAGTAC 57.548 45.455 26.16 7.09 44.28 2.73
462 463 3.119602 TGGCAAGTTGCTAGAGTAGTACG 60.120 47.826 26.16 0.00 44.28 3.67
463 464 3.128242 GGCAAGTTGCTAGAGTAGTACGA 59.872 47.826 26.16 0.00 44.28 3.43
464 465 4.202030 GGCAAGTTGCTAGAGTAGTACGAT 60.202 45.833 26.16 0.00 44.28 3.73
465 466 5.341617 GCAAGTTGCTAGAGTAGTACGATT 58.658 41.667 20.71 0.00 40.96 3.34
466 467 5.230306 GCAAGTTGCTAGAGTAGTACGATTG 59.770 44.000 20.71 0.00 40.96 2.67
467 468 6.323266 CAAGTTGCTAGAGTAGTACGATTGT 58.677 40.000 0.00 0.00 0.00 2.71
468 469 5.881447 AGTTGCTAGAGTAGTACGATTGTG 58.119 41.667 0.00 0.00 0.00 3.33
479 480 7.039270 AGTAGTACGATTGTGTGCATTTATCA 58.961 34.615 0.00 0.00 0.00 2.15
484 485 7.082700 ACGATTGTGTGCATTTATCAATGTA 57.917 32.000 1.77 0.00 41.84 2.29
485 486 7.188834 ACGATTGTGTGCATTTATCAATGTAG 58.811 34.615 1.77 0.00 41.84 2.74
487 488 8.071967 CGATTGTGTGCATTTATCAATGTAGAT 58.928 33.333 1.77 0.00 41.84 1.98
501 502 3.223674 TGTAGATGATGTAGAGGCCGA 57.776 47.619 0.00 0.00 0.00 5.54
522 523 3.127425 AGGTTTGTCCTCTTTTCGGAG 57.873 47.619 0.00 0.00 44.42 4.63
527 528 5.163591 GGTTTGTCCTCTTTTCGGAGAAAAA 60.164 40.000 8.92 0.00 42.95 1.94
569 570 2.535984 GTGAGATTTGCCGACTCGTATG 59.464 50.000 0.00 0.00 33.93 2.39
603 608 6.200286 CGTGCGACTGTTTGGATTTATATACT 59.800 38.462 0.00 0.00 0.00 2.12
604 609 7.345192 GTGCGACTGTTTGGATTTATATACTG 58.655 38.462 0.00 0.00 0.00 2.74
636 641 8.948631 TTTTAAATCCTGTAGAGATACAGCTG 57.051 34.615 13.48 13.48 44.47 4.24
643 648 4.353777 TGTAGAGATACAGCTGTTTCCCT 58.646 43.478 27.06 23.64 0.00 4.20
667 674 3.733443 AGTTTCTGAAAACCATGCACC 57.267 42.857 4.09 0.00 44.87 5.01
682 689 1.206610 TGCACCAAAACAGTGTTGCAT 59.793 42.857 14.10 0.11 37.56 3.96
705 712 2.444700 GAACCCGCCGGACTGAGAAA 62.445 60.000 5.05 0.00 0.00 2.52
764 771 2.511600 CTCCCACGTCGCCATTCC 60.512 66.667 0.00 0.00 0.00 3.01
869 881 3.066814 ACGGCCACCTACTCCGAC 61.067 66.667 2.24 0.00 45.53 4.79
904 919 4.470170 CCCGGGTTTTAAGCGCGC 62.470 66.667 26.66 26.66 40.25 6.86
1061 1079 4.394712 CCTGCGGGTCCTGGACAC 62.395 72.222 26.94 23.37 33.68 3.67
1074 1097 2.179517 GACACCGTCAGGCTCTCG 59.820 66.667 0.00 0.00 42.76 4.04
1209 1233 4.477975 GACCCGCTCGACGTCCTG 62.478 72.222 10.58 3.95 41.42 3.86
1862 5682 2.268076 CCAAGGTGAAGGCCAACCG 61.268 63.158 5.01 0.00 42.76 4.44
1913 5733 2.205074 GTACTCCATGAACATCAGCGG 58.795 52.381 0.00 0.00 0.00 5.52
2418 6238 2.569853 GGGGAAACTGTAAATTTGGGGG 59.430 50.000 0.00 0.00 0.00 5.40
2432 6252 0.177141 TGGGGGTCGCTAGAAATTCG 59.823 55.000 0.00 0.00 0.00 3.34
2435 6255 1.568606 GGGTCGCTAGAAATTCGTCC 58.431 55.000 0.00 0.00 0.00 4.79
2455 6275 2.287915 CCGGGAATGTTTATCTTCGCAG 59.712 50.000 0.00 0.00 34.89 5.18
2470 6290 1.817099 GCAGATCTTCTGGCCCACG 60.817 63.158 0.00 0.00 44.43 4.94
2558 6378 6.367161 ACTTTAGAGATACTACCTCTGTCCC 58.633 44.000 0.00 0.00 40.84 4.46
2569 6390 6.625267 ACTACCTCTGTCCCATGTATAAGAT 58.375 40.000 0.00 0.00 0.00 2.40
2575 6396 9.799106 CCTCTGTCCCATGTATAAGATATTTTT 57.201 33.333 0.00 0.00 0.00 1.94
2578 6399 8.759481 TGTCCCATGTATAAGATATTTTTGCA 57.241 30.769 0.00 0.00 0.00 4.08
2600 6421 9.809096 TTGCAGTTCAATTTATACTGAAAAACA 57.191 25.926 13.00 2.04 41.33 2.83
2601 6422 9.979578 TGCAGTTCAATTTATACTGAAAAACAT 57.020 25.926 13.00 0.00 41.33 2.71
2622 6817 7.899648 ACATCTTATATTATAGGACGGAGGG 57.100 40.000 0.00 0.00 0.00 4.30
2650 6850 3.552875 TCGCAACCTAGTCTAGTATGCT 58.447 45.455 22.07 0.00 34.94 3.79
2684 6885 8.155821 TCAGTTTATAACACAAACATTTCGGA 57.844 30.769 0.00 0.00 38.16 4.55
2692 6893 5.474825 ACACAAACATTTCGGAAACAAAGT 58.525 33.333 5.12 0.10 0.00 2.66
2693 6894 5.575218 ACACAAACATTTCGGAAACAAAGTC 59.425 36.000 5.12 0.00 0.00 3.01
2747 6949 9.305555 AGGTTAAGGATTTTTAAGTTAAGACCC 57.694 33.333 0.00 0.00 0.00 4.46
2748 6950 8.239314 GGTTAAGGATTTTTAAGTTAAGACCCG 58.761 37.037 0.00 0.00 0.00 5.28
2756 6958 2.865343 AGTTAAGACCCGCTATGACG 57.135 50.000 0.00 0.00 0.00 4.35
2797 6999 8.846943 AATTTGGGTTAGTTGATTTTTCATCC 57.153 30.769 0.00 0.00 0.00 3.51
2798 7000 5.637006 TGGGTTAGTTGATTTTTCATCCG 57.363 39.130 0.00 0.00 0.00 4.18
2800 7002 4.421058 GGTTAGTTGATTTTTCATCCGCC 58.579 43.478 0.00 0.00 0.00 6.13
2801 7003 4.421058 GTTAGTTGATTTTTCATCCGCCC 58.579 43.478 0.00 0.00 0.00 6.13
2802 7004 2.807676 AGTTGATTTTTCATCCGCCCT 58.192 42.857 0.00 0.00 0.00 5.19
2819 7021 4.629634 CCGCCCTTAAATTTTGATCAAACC 59.370 41.667 20.35 0.94 0.00 3.27
2833 7035 3.219052 TCAAACCGACACAAAACAACC 57.781 42.857 0.00 0.00 0.00 3.77
2834 7036 2.557056 TCAAACCGACACAAAACAACCA 59.443 40.909 0.00 0.00 0.00 3.67
2841 7043 5.766174 ACCGACACAAAACAACCATATACTT 59.234 36.000 0.00 0.00 0.00 2.24
2879 7081 1.408340 CGGCCCAACATATGCATTTGA 59.592 47.619 21.91 0.00 0.00 2.69
2886 7088 5.751509 CCCAACATATGCATTTGATCACAAG 59.248 40.000 21.91 0.44 37.32 3.16
2894 7096 3.058293 GCATTTGATCACAAGACGACCAA 60.058 43.478 0.00 0.00 37.32 3.67
2896 7098 5.518812 CATTTGATCACAAGACGACCAAAA 58.481 37.500 0.00 0.00 37.32 2.44
2897 7099 4.545823 TTGATCACAAGACGACCAAAAC 57.454 40.909 0.00 0.00 0.00 2.43
2934 7136 0.908180 AGGCTACAACCGGCTAACCT 60.908 55.000 0.00 0.00 35.31 3.50
2977 7330 4.284490 TGTTTGGACATCTGAGTAGCTCTT 59.716 41.667 0.00 0.00 0.00 2.85
3015 7369 8.927675 AATTAGGGTATGTGTGAAACTTTACA 57.072 30.769 0.00 0.00 38.04 2.41
3021 7375 7.352739 GGTATGTGTGAAACTTTACAGTTCAG 58.647 38.462 0.00 0.00 42.89 3.02
3033 7398 6.317893 ACTTTACAGTTCAGACCGATTTTGTT 59.682 34.615 0.00 0.00 0.00 2.83
3035 7400 4.920376 ACAGTTCAGACCGATTTTGTTTG 58.080 39.130 0.00 0.00 0.00 2.93
3062 7437 1.554160 CCACAAGCTCCTCAGATGTCT 59.446 52.381 0.00 0.00 0.00 3.41
3077 7452 6.892310 CAGATGTCTGAACACGATGAAATA 57.108 37.500 3.96 0.00 46.59 1.40
3082 7457 5.643348 TGTCTGAACACGATGAAATATTGCT 59.357 36.000 0.00 0.00 0.00 3.91
3087 7462 4.380531 ACACGATGAAATATTGCTCGGAT 58.619 39.130 15.37 4.89 33.82 4.18
3091 7466 6.311200 CACGATGAAATATTGCTCGGATATCA 59.689 38.462 15.37 2.82 33.82 2.15
3096 7471 2.462456 ATTGCTCGGATATCACGCAT 57.538 45.000 4.83 0.00 0.00 4.73
3105 7480 4.048504 CGGATATCACGCATTTGAGTGTA 58.951 43.478 13.01 6.72 44.48 2.90
3108 7483 6.365839 GGATATCACGCATTTGAGTGTATTG 58.634 40.000 13.01 0.00 44.48 1.90
3116 7491 5.156355 GCATTTGAGTGTATTGGTTGACAG 58.844 41.667 0.00 0.00 0.00 3.51
3122 7497 7.581213 TGAGTGTATTGGTTGACAGAAAAAT 57.419 32.000 0.00 0.00 0.00 1.82
3177 7555 5.344743 TTTACTATTCACCTGGAGCAGAG 57.655 43.478 0.00 0.00 32.44 3.35
3178 7556 3.107402 ACTATTCACCTGGAGCAGAGA 57.893 47.619 0.00 0.00 32.44 3.10
3182 7560 0.833409 TCACCTGGAGCAGAGAAGCA 60.833 55.000 0.00 0.00 36.85 3.91
3189 7567 1.377536 GAGCAGAGAAGCATGGGTTC 58.622 55.000 0.00 0.15 39.92 3.62
3210 7588 7.761249 GGGTTCAGAAATGAATATTCACCTTTG 59.239 37.037 20.19 15.38 40.49 2.77
3211 7589 8.306761 GGTTCAGAAATGAATATTCACCTTTGT 58.693 33.333 20.19 13.05 40.49 2.83
3212 7590 9.346725 GTTCAGAAATGAATATTCACCTTTGTC 57.653 33.333 20.19 9.23 40.49 3.18
3213 7591 8.634335 TCAGAAATGAATATTCACCTTTGTCA 57.366 30.769 20.19 1.07 40.49 3.58
3214 7592 9.246670 TCAGAAATGAATATTCACCTTTGTCAT 57.753 29.630 20.19 0.00 40.49 3.06
3215 7593 9.512435 CAGAAATGAATATTCACCTTTGTCATC 57.488 33.333 20.19 6.36 40.49 2.92
3216 7594 9.471702 AGAAATGAATATTCACCTTTGTCATCT 57.528 29.630 20.19 8.29 40.49 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.117156 GCACGGCCATGCTTCTCAT 61.117 57.895 18.36 0.00 42.62 2.90
29 30 2.747460 GCACGGCCATGCTTCTCA 60.747 61.111 18.36 0.00 42.62 3.27
40 41 2.383527 CGTTTCTGAGAGGCACGGC 61.384 63.158 3.75 0.00 0.00 5.68
41 42 0.319555 TTCGTTTCTGAGAGGCACGG 60.320 55.000 9.92 0.00 0.00 4.94
42 43 1.497991 TTTCGTTTCTGAGAGGCACG 58.502 50.000 4.99 4.99 0.00 5.34
43 44 2.413371 GCATTTCGTTTCTGAGAGGCAC 60.413 50.000 0.00 0.00 31.03 5.01
44 45 1.806542 GCATTTCGTTTCTGAGAGGCA 59.193 47.619 0.00 0.00 31.03 4.75
45 46 1.201965 CGCATTTCGTTTCTGAGAGGC 60.202 52.381 0.00 0.00 0.00 4.70
46 47 2.795121 CGCATTTCGTTTCTGAGAGG 57.205 50.000 0.00 0.00 0.00 3.69
67 68 1.495509 CGTGCATCTCGCGGAAAAA 59.504 52.632 6.13 0.00 46.97 1.94
68 69 3.164576 CGTGCATCTCGCGGAAAA 58.835 55.556 6.13 0.00 46.97 2.29
74 75 3.857854 CACAGCCGTGCATCTCGC 61.858 66.667 0.00 0.00 42.89 5.03
130 131 1.142060 TGCCTCTCACGGAAGGAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
131 132 0.762418 TGCCTCTCACGGAAGGAAAA 59.238 50.000 0.00 0.00 0.00 2.29
132 133 0.984230 ATGCCTCTCACGGAAGGAAA 59.016 50.000 0.00 0.00 0.00 3.13
133 134 0.250234 CATGCCTCTCACGGAAGGAA 59.750 55.000 0.00 0.00 0.00 3.36
134 135 1.617018 CCATGCCTCTCACGGAAGGA 61.617 60.000 0.00 0.00 26.83 3.36
135 136 1.153289 CCATGCCTCTCACGGAAGG 60.153 63.158 0.00 0.00 26.83 3.46
136 137 1.817099 GCCATGCCTCTCACGGAAG 60.817 63.158 0.00 0.00 26.83 3.46
137 138 2.268920 GCCATGCCTCTCACGGAA 59.731 61.111 0.00 0.00 26.83 4.30
138 139 3.785859 GGCCATGCCTCTCACGGA 61.786 66.667 0.00 0.00 46.69 4.69
160 161 3.158268 GCGTATTTTCCGTTTCCGAAAG 58.842 45.455 0.00 0.00 35.63 2.62
161 162 2.411289 CGCGTATTTTCCGTTTCCGAAA 60.411 45.455 0.00 0.00 35.63 3.46
162 163 1.126479 CGCGTATTTTCCGTTTCCGAA 59.874 47.619 0.00 0.00 35.63 4.30
163 164 0.714994 CGCGTATTTTCCGTTTCCGA 59.285 50.000 0.00 0.00 35.63 4.55
164 165 0.854445 GCGCGTATTTTCCGTTTCCG 60.854 55.000 8.43 0.00 0.00 4.30
165 166 0.445043 AGCGCGTATTTTCCGTTTCC 59.555 50.000 8.43 0.00 0.00 3.13
166 167 3.580794 ATAGCGCGTATTTTCCGTTTC 57.419 42.857 8.43 0.00 0.00 2.78
167 168 4.345271 AAATAGCGCGTATTTTCCGTTT 57.655 36.364 8.43 0.00 38.00 3.60
168 169 4.345271 AAAATAGCGCGTATTTTCCGTT 57.655 36.364 22.37 9.68 44.69 4.44
169 170 4.336932 GAAAAATAGCGCGTATTTTCCGT 58.663 39.130 25.40 16.97 46.38 4.69
170 171 3.722289 GGAAAAATAGCGCGTATTTTCCG 59.278 43.478 31.46 0.00 46.38 4.30
171 172 4.916870 AGGAAAAATAGCGCGTATTTTCC 58.083 39.130 34.43 34.43 46.38 3.13
172 173 5.454554 GGAAGGAAAAATAGCGCGTATTTTC 59.545 40.000 25.40 25.70 46.38 2.29
174 175 4.495184 CGGAAGGAAAAATAGCGCGTATTT 60.495 41.667 8.43 13.50 42.22 1.40
175 176 3.001939 CGGAAGGAAAAATAGCGCGTATT 59.998 43.478 8.43 8.00 32.21 1.89
176 177 2.542595 CGGAAGGAAAAATAGCGCGTAT 59.457 45.455 8.43 1.36 0.00 3.06
177 178 1.928503 CGGAAGGAAAAATAGCGCGTA 59.071 47.619 8.43 0.00 0.00 4.42
178 179 0.725117 CGGAAGGAAAAATAGCGCGT 59.275 50.000 8.43 0.00 0.00 6.01
179 180 0.588980 GCGGAAGGAAAAATAGCGCG 60.589 55.000 0.00 0.00 0.00 6.86
180 181 0.588980 CGCGGAAGGAAAAATAGCGC 60.589 55.000 0.00 0.00 39.68 5.92
181 182 0.027586 CCGCGGAAGGAAAAATAGCG 59.972 55.000 24.07 0.00 44.82 4.26
182 183 1.375551 TCCGCGGAAGGAAAAATAGC 58.624 50.000 28.99 0.00 37.36 2.97
190 191 2.358247 GTGCTTTCCGCGGAAGGA 60.358 61.111 43.24 31.73 43.27 3.36
191 192 3.788766 CGTGCTTTCCGCGGAAGG 61.789 66.667 37.44 37.44 43.43 3.46
196 197 1.511887 CAAATCCGTGCTTTCCGCG 60.512 57.895 0.00 0.00 46.55 6.46
197 198 1.801512 GCAAATCCGTGCTTTCCGC 60.802 57.895 0.00 0.00 41.51 5.54
198 199 4.458164 GCAAATCCGTGCTTTCCG 57.542 55.556 0.00 0.00 41.51 4.30
204 205 0.237235 TCGTGAAAGCAAATCCGTGC 59.763 50.000 0.00 0.00 45.28 5.34
205 206 1.798223 TCTCGTGAAAGCAAATCCGTG 59.202 47.619 0.00 0.00 0.00 4.94
206 207 2.069273 CTCTCGTGAAAGCAAATCCGT 58.931 47.619 0.00 0.00 0.00 4.69
207 208 1.394917 CCTCTCGTGAAAGCAAATCCG 59.605 52.381 0.00 0.00 0.00 4.18
208 209 1.131315 GCCTCTCGTGAAAGCAAATCC 59.869 52.381 4.73 0.00 0.00 3.01
209 210 1.806542 TGCCTCTCGTGAAAGCAAATC 59.193 47.619 8.84 0.00 31.30 2.17
210 211 1.896220 TGCCTCTCGTGAAAGCAAAT 58.104 45.000 8.84 0.00 31.30 2.32
211 212 1.536766 CATGCCTCTCGTGAAAGCAAA 59.463 47.619 13.73 0.00 35.88 3.68
212 213 1.159285 CATGCCTCTCGTGAAAGCAA 58.841 50.000 13.73 1.65 35.88 3.91
213 214 0.674581 CCATGCCTCTCGTGAAAGCA 60.675 55.000 12.53 12.53 36.43 3.91
214 215 1.986575 GCCATGCCTCTCGTGAAAGC 61.987 60.000 2.99 2.99 33.49 3.51
215 216 0.392193 AGCCATGCCTCTCGTGAAAG 60.392 55.000 0.00 0.00 33.49 2.62
216 217 0.674581 CAGCCATGCCTCTCGTGAAA 60.675 55.000 0.00 0.00 33.49 2.69
217 218 1.078918 CAGCCATGCCTCTCGTGAA 60.079 57.895 0.00 0.00 33.49 3.18
218 219 2.285773 ACAGCCATGCCTCTCGTGA 61.286 57.895 0.00 0.00 33.49 4.35
219 220 2.104859 CACAGCCATGCCTCTCGTG 61.105 63.158 0.00 0.00 0.00 4.35
220 221 2.267006 CACAGCCATGCCTCTCGT 59.733 61.111 0.00 0.00 0.00 4.18
221 222 3.200593 GCACAGCCATGCCTCTCG 61.201 66.667 0.00 0.00 39.86 4.04
232 233 1.228245 TGTTTCTGGGAGGCACAGC 60.228 57.895 0.00 0.00 35.94 4.40
233 234 0.397941 TCTGTTTCTGGGAGGCACAG 59.602 55.000 0.00 0.00 36.91 3.66
234 235 0.843309 TTCTGTTTCTGGGAGGCACA 59.157 50.000 0.00 0.00 0.00 4.57
235 236 1.981256 TTTCTGTTTCTGGGAGGCAC 58.019 50.000 0.00 0.00 0.00 5.01
236 237 2.746279 TTTTCTGTTTCTGGGAGGCA 57.254 45.000 0.00 0.00 0.00 4.75
255 256 5.341617 TCGCGGAAGTTAAAAACACATTTT 58.658 33.333 6.13 0.00 43.52 1.82
256 257 4.922719 TCGCGGAAGTTAAAAACACATTT 58.077 34.783 6.13 0.00 0.00 2.32
257 258 4.273969 TCTCGCGGAAGTTAAAAACACATT 59.726 37.500 6.13 0.00 0.00 2.71
258 259 3.810941 TCTCGCGGAAGTTAAAAACACAT 59.189 39.130 6.13 0.00 0.00 3.21
259 260 3.196463 TCTCGCGGAAGTTAAAAACACA 58.804 40.909 6.13 0.00 0.00 3.72
260 261 3.363673 CCTCTCGCGGAAGTTAAAAACAC 60.364 47.826 6.13 0.00 0.00 3.32
261 262 2.803956 CCTCTCGCGGAAGTTAAAAACA 59.196 45.455 6.13 0.00 0.00 2.83
262 263 2.412455 GCCTCTCGCGGAAGTTAAAAAC 60.412 50.000 6.13 0.00 0.00 2.43
263 264 1.802365 GCCTCTCGCGGAAGTTAAAAA 59.198 47.619 6.13 0.00 0.00 1.94
264 265 1.270412 TGCCTCTCGCGGAAGTTAAAA 60.270 47.619 6.13 0.00 42.08 1.52
265 266 0.319083 TGCCTCTCGCGGAAGTTAAA 59.681 50.000 6.13 0.00 42.08 1.52
266 267 0.389426 GTGCCTCTCGCGGAAGTTAA 60.389 55.000 6.13 0.00 42.08 2.01
267 268 1.214589 GTGCCTCTCGCGGAAGTTA 59.785 57.895 6.13 0.00 42.08 2.24
268 269 2.048127 GTGCCTCTCGCGGAAGTT 60.048 61.111 6.13 0.00 42.08 2.66
269 270 4.421479 CGTGCCTCTCGCGGAAGT 62.421 66.667 6.13 0.00 44.36 3.01
287 288 4.535526 TTTCATTTCCTAAAGGCAAGGC 57.464 40.909 0.00 0.00 33.84 4.35
326 327 5.393678 CCTCTCGTGGTTGGAAAAAGAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
327 328 4.097286 CCTCTCGTGGTTGGAAAAAGAAAA 59.903 41.667 0.00 0.00 0.00 2.29
328 329 3.630312 CCTCTCGTGGTTGGAAAAAGAAA 59.370 43.478 0.00 0.00 0.00 2.52
329 330 3.211045 CCTCTCGTGGTTGGAAAAAGAA 58.789 45.455 0.00 0.00 0.00 2.52
330 331 2.171870 ACCTCTCGTGGTTGGAAAAAGA 59.828 45.455 0.00 0.00 36.89 2.52
331 332 2.572290 ACCTCTCGTGGTTGGAAAAAG 58.428 47.619 0.00 0.00 36.89 2.27
332 333 2.721425 ACCTCTCGTGGTTGGAAAAA 57.279 45.000 0.00 0.00 36.89 1.94
333 334 2.435069 TGTACCTCTCGTGGTTGGAAAA 59.565 45.455 3.26 0.00 41.22 2.29
334 335 2.036733 CTGTACCTCTCGTGGTTGGAAA 59.963 50.000 3.26 0.00 41.22 3.13
335 336 1.616865 CTGTACCTCTCGTGGTTGGAA 59.383 52.381 3.26 0.00 41.22 3.53
336 337 1.254026 CTGTACCTCTCGTGGTTGGA 58.746 55.000 3.26 0.00 41.22 3.53
337 338 0.966920 ACTGTACCTCTCGTGGTTGG 59.033 55.000 3.26 0.00 41.22 3.77
338 339 2.814280 AACTGTACCTCTCGTGGTTG 57.186 50.000 3.26 0.00 41.22 3.77
339 340 3.463944 CAAAACTGTACCTCTCGTGGTT 58.536 45.455 3.26 0.00 41.22 3.67
340 341 2.805657 GCAAAACTGTACCTCTCGTGGT 60.806 50.000 0.00 0.00 43.66 4.16
341 342 1.798813 GCAAAACTGTACCTCTCGTGG 59.201 52.381 0.00 0.00 0.00 4.94
342 343 2.755650 AGCAAAACTGTACCTCTCGTG 58.244 47.619 0.00 0.00 0.00 4.35
343 344 3.391049 GAAGCAAAACTGTACCTCTCGT 58.609 45.455 0.00 0.00 0.00 4.18
344 345 2.408704 CGAAGCAAAACTGTACCTCTCG 59.591 50.000 0.00 0.00 0.00 4.04
345 346 2.737252 CCGAAGCAAAACTGTACCTCTC 59.263 50.000 0.00 0.00 0.00 3.20
346 347 2.104281 ACCGAAGCAAAACTGTACCTCT 59.896 45.455 0.00 0.00 0.00 3.69
347 348 2.223377 CACCGAAGCAAAACTGTACCTC 59.777 50.000 0.00 0.00 0.00 3.85
348 349 2.218603 CACCGAAGCAAAACTGTACCT 58.781 47.619 0.00 0.00 0.00 3.08
349 350 1.944709 ACACCGAAGCAAAACTGTACC 59.055 47.619 0.00 0.00 0.00 3.34
350 351 2.353579 ACACACCGAAGCAAAACTGTAC 59.646 45.455 0.00 0.00 0.00 2.90
351 352 2.610374 GACACACCGAAGCAAAACTGTA 59.390 45.455 0.00 0.00 0.00 2.74
352 353 1.400494 GACACACCGAAGCAAAACTGT 59.600 47.619 0.00 0.00 0.00 3.55
353 354 1.670811 AGACACACCGAAGCAAAACTG 59.329 47.619 0.00 0.00 0.00 3.16
354 355 1.940613 GAGACACACCGAAGCAAAACT 59.059 47.619 0.00 0.00 0.00 2.66
355 356 1.332904 CGAGACACACCGAAGCAAAAC 60.333 52.381 0.00 0.00 0.00 2.43
356 357 0.934496 CGAGACACACCGAAGCAAAA 59.066 50.000 0.00 0.00 0.00 2.44
357 358 0.103390 TCGAGACACACCGAAGCAAA 59.897 50.000 0.00 0.00 0.00 3.68
358 359 0.318699 CTCGAGACACACCGAAGCAA 60.319 55.000 6.58 0.00 34.17 3.91
359 360 1.285950 CTCGAGACACACCGAAGCA 59.714 57.895 6.58 0.00 34.17 3.91
360 361 2.089349 GCTCGAGACACACCGAAGC 61.089 63.158 18.75 0.00 34.17 3.86
361 362 0.039074 AAGCTCGAGACACACCGAAG 60.039 55.000 18.75 0.00 34.17 3.79
362 363 0.387929 AAAGCTCGAGACACACCGAA 59.612 50.000 18.75 0.00 34.17 4.30
363 364 0.318699 CAAAGCTCGAGACACACCGA 60.319 55.000 18.75 0.00 0.00 4.69
364 365 0.318699 TCAAAGCTCGAGACACACCG 60.319 55.000 18.75 0.00 0.00 4.94
365 366 1.728971 CATCAAAGCTCGAGACACACC 59.271 52.381 18.75 0.00 0.00 4.16
366 367 2.677199 TCATCAAAGCTCGAGACACAC 58.323 47.619 18.75 0.00 0.00 3.82
367 368 3.385193 TTCATCAAAGCTCGAGACACA 57.615 42.857 18.75 0.00 0.00 3.72
368 369 4.935885 ATTTCATCAAAGCTCGAGACAC 57.064 40.909 18.75 0.00 0.00 3.67
369 370 5.692814 CAAATTTCATCAAAGCTCGAGACA 58.307 37.500 18.75 0.00 0.00 3.41
370 371 4.556523 GCAAATTTCATCAAAGCTCGAGAC 59.443 41.667 18.75 7.74 0.00 3.36
371 372 4.216042 TGCAAATTTCATCAAAGCTCGAGA 59.784 37.500 18.75 0.00 0.00 4.04
372 373 4.322804 GTGCAAATTTCATCAAAGCTCGAG 59.677 41.667 8.45 8.45 0.00 4.04
373 374 4.229096 GTGCAAATTTCATCAAAGCTCGA 58.771 39.130 0.00 0.00 0.00 4.04
374 375 3.365820 GGTGCAAATTTCATCAAAGCTCG 59.634 43.478 0.00 0.00 0.00 5.03
375 376 4.309099 TGGTGCAAATTTCATCAAAGCTC 58.691 39.130 0.00 0.00 0.00 4.09
376 377 4.039488 TCTGGTGCAAATTTCATCAAAGCT 59.961 37.500 0.00 0.00 0.00 3.74
377 378 4.151157 GTCTGGTGCAAATTTCATCAAAGC 59.849 41.667 0.00 0.00 0.00 3.51
378 379 5.535333 AGTCTGGTGCAAATTTCATCAAAG 58.465 37.500 0.00 0.21 0.00 2.77
379 380 5.302568 AGAGTCTGGTGCAAATTTCATCAAA 59.697 36.000 0.00 0.00 0.00 2.69
380 381 4.828939 AGAGTCTGGTGCAAATTTCATCAA 59.171 37.500 0.00 0.00 0.00 2.57
381 382 4.401022 AGAGTCTGGTGCAAATTTCATCA 58.599 39.130 0.00 0.00 0.00 3.07
382 383 5.382618 AAGAGTCTGGTGCAAATTTCATC 57.617 39.130 0.00 0.00 0.00 2.92
383 384 6.240894 TCTAAGAGTCTGGTGCAAATTTCAT 58.759 36.000 0.00 0.00 0.00 2.57
384 385 5.620206 TCTAAGAGTCTGGTGCAAATTTCA 58.380 37.500 0.00 0.00 0.00 2.69
385 386 6.749923 ATCTAAGAGTCTGGTGCAAATTTC 57.250 37.500 0.00 0.00 0.00 2.17
386 387 7.309438 GGAAATCTAAGAGTCTGGTGCAAATTT 60.309 37.037 0.00 0.00 0.00 1.82
387 388 6.151817 GGAAATCTAAGAGTCTGGTGCAAATT 59.848 38.462 0.00 0.00 0.00 1.82
388 389 5.649831 GGAAATCTAAGAGTCTGGTGCAAAT 59.350 40.000 0.00 0.00 0.00 2.32
389 390 5.003804 GGAAATCTAAGAGTCTGGTGCAAA 58.996 41.667 0.00 0.00 0.00 3.68
390 391 4.565652 GGGAAATCTAAGAGTCTGGTGCAA 60.566 45.833 0.00 0.00 0.00 4.08
391 392 3.055094 GGGAAATCTAAGAGTCTGGTGCA 60.055 47.826 0.00 0.00 0.00 4.57
392 393 3.198853 AGGGAAATCTAAGAGTCTGGTGC 59.801 47.826 0.00 0.00 0.00 5.01
393 394 4.467795 TGAGGGAAATCTAAGAGTCTGGTG 59.532 45.833 0.00 0.00 0.00 4.17
394 395 4.689062 TGAGGGAAATCTAAGAGTCTGGT 58.311 43.478 0.00 0.00 0.00 4.00
395 396 4.100808 CCTGAGGGAAATCTAAGAGTCTGG 59.899 50.000 0.00 0.00 33.58 3.86
396 397 4.959210 TCCTGAGGGAAATCTAAGAGTCTG 59.041 45.833 0.00 0.00 38.93 3.51
397 398 5.213868 TCCTGAGGGAAATCTAAGAGTCT 57.786 43.478 0.00 0.00 38.93 3.24
398 399 7.790782 ATATCCTGAGGGAAATCTAAGAGTC 57.209 40.000 0.00 0.00 45.78 3.36
399 400 9.095700 GTAATATCCTGAGGGAAATCTAAGAGT 57.904 37.037 0.00 0.00 45.78 3.24
400 401 9.320295 AGTAATATCCTGAGGGAAATCTAAGAG 57.680 37.037 0.00 0.00 45.78 2.85
401 402 9.315363 GAGTAATATCCTGAGGGAAATCTAAGA 57.685 37.037 0.00 0.00 45.78 2.10
402 403 8.247562 CGAGTAATATCCTGAGGGAAATCTAAG 58.752 40.741 0.00 0.00 45.78 2.18
403 404 7.178628 CCGAGTAATATCCTGAGGGAAATCTAA 59.821 40.741 0.00 0.00 45.78 2.10
404 405 6.663953 CCGAGTAATATCCTGAGGGAAATCTA 59.336 42.308 0.00 0.00 45.78 1.98
405 406 5.482175 CCGAGTAATATCCTGAGGGAAATCT 59.518 44.000 0.00 0.00 45.78 2.40
406 407 5.337652 CCCGAGTAATATCCTGAGGGAAATC 60.338 48.000 0.00 0.00 45.78 2.17
407 408 4.532521 CCCGAGTAATATCCTGAGGGAAAT 59.467 45.833 0.00 0.00 45.78 2.17
408 409 3.901844 CCCGAGTAATATCCTGAGGGAAA 59.098 47.826 0.00 0.00 45.78 3.13
409 410 3.141460 TCCCGAGTAATATCCTGAGGGAA 59.859 47.826 0.00 0.00 45.78 3.97
410 411 2.720254 TCCCGAGTAATATCCTGAGGGA 59.280 50.000 0.00 9.42 46.81 4.20
411 412 2.826725 GTCCCGAGTAATATCCTGAGGG 59.173 54.545 0.00 0.00 38.95 4.30
412 413 3.497332 TGTCCCGAGTAATATCCTGAGG 58.503 50.000 0.00 0.00 0.00 3.86
413 414 6.835819 TTATGTCCCGAGTAATATCCTGAG 57.164 41.667 0.00 0.00 0.00 3.35
414 415 7.674348 AGAATTATGTCCCGAGTAATATCCTGA 59.326 37.037 0.00 0.00 0.00 3.86
415 416 7.761704 CAGAATTATGTCCCGAGTAATATCCTG 59.238 40.741 0.00 0.00 0.00 3.86
416 417 7.093289 CCAGAATTATGTCCCGAGTAATATCCT 60.093 40.741 0.00 0.00 0.00 3.24
417 418 7.042335 CCAGAATTATGTCCCGAGTAATATCC 58.958 42.308 0.00 0.00 0.00 2.59
418 419 6.535508 GCCAGAATTATGTCCCGAGTAATATC 59.464 42.308 0.00 0.00 0.00 1.63
419 420 6.013725 TGCCAGAATTATGTCCCGAGTAATAT 60.014 38.462 0.00 0.00 0.00 1.28
420 421 5.305902 TGCCAGAATTATGTCCCGAGTAATA 59.694 40.000 0.00 0.00 0.00 0.98
421 422 4.102524 TGCCAGAATTATGTCCCGAGTAAT 59.897 41.667 0.00 0.00 0.00 1.89
422 423 3.452990 TGCCAGAATTATGTCCCGAGTAA 59.547 43.478 0.00 0.00 0.00 2.24
423 424 3.035363 TGCCAGAATTATGTCCCGAGTA 58.965 45.455 0.00 0.00 0.00 2.59
424 425 1.837439 TGCCAGAATTATGTCCCGAGT 59.163 47.619 0.00 0.00 0.00 4.18
425 426 2.620251 TGCCAGAATTATGTCCCGAG 57.380 50.000 0.00 0.00 0.00 4.63
426 427 2.238646 ACTTGCCAGAATTATGTCCCGA 59.761 45.455 0.00 0.00 0.00 5.14
427 428 2.643551 ACTTGCCAGAATTATGTCCCG 58.356 47.619 0.00 0.00 0.00 5.14
428 429 3.429410 GCAACTTGCCAGAATTATGTCCC 60.429 47.826 1.95 0.00 37.42 4.46
429 430 3.445096 AGCAACTTGCCAGAATTATGTCC 59.555 43.478 10.25 0.00 46.52 4.02
430 431 4.708726 AGCAACTTGCCAGAATTATGTC 57.291 40.909 10.25 0.00 46.52 3.06
431 432 5.500234 TCTAGCAACTTGCCAGAATTATGT 58.500 37.500 9.19 0.00 46.52 2.29
432 433 5.587844 ACTCTAGCAACTTGCCAGAATTATG 59.412 40.000 12.22 4.23 46.52 1.90
433 434 5.749462 ACTCTAGCAACTTGCCAGAATTAT 58.251 37.500 12.22 0.00 46.52 1.28
434 435 5.165961 ACTCTAGCAACTTGCCAGAATTA 57.834 39.130 12.22 0.00 46.52 1.40
435 436 4.026356 ACTCTAGCAACTTGCCAGAATT 57.974 40.909 12.22 1.39 46.52 2.17
436 437 3.710209 ACTCTAGCAACTTGCCAGAAT 57.290 42.857 12.22 0.73 46.52 2.40
437 438 3.578716 ACTACTCTAGCAACTTGCCAGAA 59.421 43.478 12.22 0.00 46.52 3.02
438 439 3.165875 ACTACTCTAGCAACTTGCCAGA 58.834 45.455 10.90 10.90 46.52 3.86
439 440 3.601443 ACTACTCTAGCAACTTGCCAG 57.399 47.619 10.25 6.50 46.52 4.85
440 441 3.119602 CGTACTACTCTAGCAACTTGCCA 60.120 47.826 10.25 0.00 46.52 4.92
441 442 3.128242 TCGTACTACTCTAGCAACTTGCC 59.872 47.826 10.25 0.00 46.52 4.52
442 443 4.352600 TCGTACTACTCTAGCAACTTGC 57.647 45.455 5.55 5.55 45.46 4.01
443 444 6.251589 CACAATCGTACTACTCTAGCAACTTG 59.748 42.308 0.00 0.00 0.00 3.16
444 445 6.072064 ACACAATCGTACTACTCTAGCAACTT 60.072 38.462 0.00 0.00 0.00 2.66
445 446 5.415077 ACACAATCGTACTACTCTAGCAACT 59.585 40.000 0.00 0.00 0.00 3.16
446 447 5.512082 CACACAATCGTACTACTCTAGCAAC 59.488 44.000 0.00 0.00 0.00 4.17
447 448 5.637809 CACACAATCGTACTACTCTAGCAA 58.362 41.667 0.00 0.00 0.00 3.91
448 449 4.438336 GCACACAATCGTACTACTCTAGCA 60.438 45.833 0.00 0.00 0.00 3.49
449 450 4.036352 GCACACAATCGTACTACTCTAGC 58.964 47.826 0.00 0.00 0.00 3.42
450 451 5.231265 TGCACACAATCGTACTACTCTAG 57.769 43.478 0.00 0.00 0.00 2.43
451 452 5.830000 ATGCACACAATCGTACTACTCTA 57.170 39.130 0.00 0.00 0.00 2.43
452 453 4.720649 ATGCACACAATCGTACTACTCT 57.279 40.909 0.00 0.00 0.00 3.24
453 454 5.779806 AAATGCACACAATCGTACTACTC 57.220 39.130 0.00 0.00 0.00 2.59
454 455 7.039270 TGATAAATGCACACAATCGTACTACT 58.961 34.615 0.00 0.00 0.00 2.57
455 456 7.229228 TGATAAATGCACACAATCGTACTAC 57.771 36.000 0.00 0.00 0.00 2.73
456 457 7.835634 TTGATAAATGCACACAATCGTACTA 57.164 32.000 0.00 0.00 0.00 1.82
457 458 6.735678 TTGATAAATGCACACAATCGTACT 57.264 33.333 0.00 0.00 0.00 2.73
458 459 6.966632 ACATTGATAAATGCACACAATCGTAC 59.033 34.615 2.36 0.00 33.57 3.67
459 460 7.082700 ACATTGATAAATGCACACAATCGTA 57.917 32.000 2.36 0.00 33.57 3.43
460 461 5.953183 ACATTGATAAATGCACACAATCGT 58.047 33.333 2.36 0.00 33.57 3.73
461 462 7.408910 TCTACATTGATAAATGCACACAATCG 58.591 34.615 2.36 0.00 33.57 3.34
462 463 9.177304 CATCTACATTGATAAATGCACACAATC 57.823 33.333 2.36 0.00 33.57 2.67
463 464 8.905850 TCATCTACATTGATAAATGCACACAAT 58.094 29.630 2.36 0.00 33.57 2.71
464 465 8.278729 TCATCTACATTGATAAATGCACACAA 57.721 30.769 2.36 0.00 33.57 3.33
465 466 7.862512 TCATCTACATTGATAAATGCACACA 57.137 32.000 2.36 0.00 33.57 3.72
466 467 8.347771 ACATCATCTACATTGATAAATGCACAC 58.652 33.333 2.36 0.00 32.63 3.82
467 468 8.454570 ACATCATCTACATTGATAAATGCACA 57.545 30.769 2.36 0.00 32.63 4.57
479 480 4.152647 TCGGCCTCTACATCATCTACATT 58.847 43.478 0.00 0.00 0.00 2.71
484 485 1.967066 CCTTCGGCCTCTACATCATCT 59.033 52.381 0.00 0.00 0.00 2.90
485 486 1.689273 ACCTTCGGCCTCTACATCATC 59.311 52.381 0.00 0.00 0.00 2.92
487 488 1.568504 AACCTTCGGCCTCTACATCA 58.431 50.000 0.00 0.00 0.00 3.07
569 570 1.425412 ACAGTCGCACGTTTACATCC 58.575 50.000 0.00 0.00 0.00 3.51
603 608 7.741785 TCTCTACAGGATTTAAAAAGACACCA 58.258 34.615 0.00 0.00 0.00 4.17
604 609 8.794335 ATCTCTACAGGATTTAAAAAGACACC 57.206 34.615 0.00 0.00 0.00 4.16
636 641 5.810587 GGTTTTCAGAAACTTCAAGGGAAAC 59.189 40.000 0.00 0.00 43.68 2.78
643 648 5.108517 GTGCATGGTTTTCAGAAACTTCAA 58.891 37.500 0.00 0.00 43.68 2.69
667 674 2.811855 TCTGCATGCAACACTGTTTTG 58.188 42.857 22.88 5.86 0.00 2.44
705 712 1.506262 GCGCCGACACCATTTCAAT 59.494 52.632 0.00 0.00 0.00 2.57
764 771 0.388649 CGAGGTGTTTCCAGGACGAG 60.389 60.000 0.00 0.00 39.02 4.18
869 881 0.756294 GGGAAGTTTGTTTGGGTGGG 59.244 55.000 0.00 0.00 0.00 4.61
904 919 0.390472 AAGGAAGGAAAGAGCTCGCG 60.390 55.000 8.37 0.00 0.00 5.87
915 930 1.229853 GGTGGGAGGGAAGGAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
916 931 2.670148 CGGTGGGAGGGAAGGAAGG 61.670 68.421 0.00 0.00 0.00 3.46
917 932 2.990479 CGGTGGGAGGGAAGGAAG 59.010 66.667 0.00 0.00 0.00 3.46
1137 1161 2.792599 CGGAAGGAGACGTCGAGG 59.207 66.667 10.46 3.03 40.00 4.63
1728 5548 1.374758 GACGTGGAAGCACTCCCTG 60.375 63.158 0.00 0.00 44.69 4.45
1862 5682 2.993264 TCTCGTCGGGGGTGGTTC 60.993 66.667 0.00 0.00 0.00 3.62
2027 5847 1.294780 CGCTTGCTCTTCCTGACCT 59.705 57.895 0.00 0.00 0.00 3.85
2389 6209 0.690762 TACAGTTTCCCCACTGAGGC 59.309 55.000 7.82 0.00 46.29 4.70
2418 6238 1.197910 CCGGACGAATTTCTAGCGAC 58.802 55.000 0.00 0.00 0.00 5.19
2432 6252 2.287103 GCGAAGATAAACATTCCCGGAC 59.713 50.000 0.73 0.00 0.00 4.79
2435 6255 3.194861 TCTGCGAAGATAAACATTCCCG 58.805 45.455 0.00 0.00 0.00 5.14
2455 6275 0.804989 CAAACGTGGGCCAGAAGATC 59.195 55.000 6.40 0.00 0.00 2.75
2531 6351 7.339976 GGACAGAGGTAGTATCTCTAAAGTTGT 59.660 40.741 12.71 6.55 39.36 3.32
2532 6352 7.201839 GGGACAGAGGTAGTATCTCTAAAGTTG 60.202 44.444 12.71 3.39 39.36 3.16
2575 6396 9.979578 ATGTTTTTCAGTATAAATTGAACTGCA 57.020 25.926 9.23 0.00 40.34 4.41
2598 6419 7.649715 TCCCTCCGTCCTATAATATAAGATGT 58.350 38.462 0.00 0.00 0.00 3.06
2599 6420 7.780745 ACTCCCTCCGTCCTATAATATAAGATG 59.219 40.741 0.00 0.00 0.00 2.90
2600 6421 7.884891 ACTCCCTCCGTCCTATAATATAAGAT 58.115 38.462 0.00 0.00 0.00 2.40
2601 6422 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
2602 6423 8.492782 TCTACTCCCTCCGTCCTATAATATAAG 58.507 40.741 0.00 0.00 0.00 1.73
2608 6803 4.323333 CGATCTACTCCCTCCGTCCTATAA 60.323 50.000 0.00 0.00 0.00 0.98
2612 6807 0.108963 CGATCTACTCCCTCCGTCCT 59.891 60.000 0.00 0.00 0.00 3.85
2621 6816 3.215975 AGACTAGGTTGCGATCTACTCC 58.784 50.000 0.00 0.00 0.00 3.85
2622 6817 5.058490 ACTAGACTAGGTTGCGATCTACTC 58.942 45.833 14.03 0.00 0.00 2.59
2667 6867 7.091443 ACTTTGTTTCCGAAATGTTTGTGTTA 58.909 30.769 0.00 0.00 0.00 2.41
2676 6876 6.743575 ATAGAGGACTTTGTTTCCGAAATG 57.256 37.500 0.00 0.00 38.29 2.32
2684 6885 8.383175 TCTGGACATAAATAGAGGACTTTGTTT 58.617 33.333 0.00 0.00 0.00 2.83
2728 6930 5.892160 AGCGGGTCTTAACTTAAAAATCC 57.108 39.130 0.00 0.00 0.00 3.01
2747 6949 1.647346 TTTAGGCAACCGTCATAGCG 58.353 50.000 0.00 0.00 37.17 4.26
2748 6950 4.632538 AAATTTAGGCAACCGTCATAGC 57.367 40.909 0.00 0.00 37.17 2.97
2756 6958 7.753309 ACCCAAATTTTAAATTTAGGCAACC 57.247 32.000 21.46 0.00 37.17 3.77
2785 6987 5.930837 ATTTAAGGGCGGATGAAAAATCA 57.069 34.783 0.00 0.00 0.00 2.57
2791 6993 5.420421 TGATCAAAATTTAAGGGCGGATGAA 59.580 36.000 0.00 0.00 0.00 2.57
2797 6999 4.326009 CGGTTTGATCAAAATTTAAGGGCG 59.674 41.667 22.07 1.09 31.33 6.13
2798 7000 5.347635 GTCGGTTTGATCAAAATTTAAGGGC 59.652 40.000 22.07 6.76 31.33 5.19
2800 7002 6.920758 TGTGTCGGTTTGATCAAAATTTAAGG 59.079 34.615 22.07 7.11 31.33 2.69
2801 7003 7.922505 TGTGTCGGTTTGATCAAAATTTAAG 57.077 32.000 22.07 10.09 31.33 1.85
2802 7004 8.703604 TTTGTGTCGGTTTGATCAAAATTTAA 57.296 26.923 22.07 8.84 33.57 1.52
2819 7021 8.025243 ACTAAGTATATGGTTGTTTTGTGTCG 57.975 34.615 0.00 0.00 0.00 4.35
2833 7035 9.046296 GTGTGAGGGAAATCAACTAAGTATATG 57.954 37.037 0.00 0.00 0.00 1.78
2834 7036 7.926555 CGTGTGAGGGAAATCAACTAAGTATAT 59.073 37.037 0.00 0.00 0.00 0.86
2841 7043 2.614481 GCCGTGTGAGGGAAATCAACTA 60.614 50.000 0.00 0.00 0.00 2.24
2879 7081 2.616842 GGTGTTTTGGTCGTCTTGTGAT 59.383 45.455 0.00 0.00 0.00 3.06
2886 7088 2.544903 CCCAATTGGTGTTTTGGTCGTC 60.545 50.000 22.91 0.00 40.68 4.20
2908 7110 0.605319 CCGGTTGTAGCCTGCTTCAA 60.605 55.000 7.05 7.05 32.34 2.69
2917 7119 0.248289 TCAGGTTAGCCGGTTGTAGC 59.752 55.000 1.90 0.00 40.50 3.58
2934 7136 7.875041 CCAAACACCACCAAATTTGTTATATCA 59.125 33.333 16.73 0.00 31.92 2.15
2986 7339 7.833285 AGTTTCACACATACCCTAATTTTGT 57.167 32.000 0.00 0.00 0.00 2.83
2993 7347 7.069877 ACTGTAAAGTTTCACACATACCCTA 57.930 36.000 0.00 0.00 0.00 3.53
2995 7349 6.261381 TGAACTGTAAAGTTTCACACATACCC 59.739 38.462 0.00 0.00 31.35 3.69
3004 7358 5.013568 TCGGTCTGAACTGTAAAGTTTCA 57.986 39.130 0.00 0.00 33.20 2.69
3015 7369 5.576447 AACAAACAAAATCGGTCTGAACT 57.424 34.783 0.00 0.00 0.00 3.01
3021 7375 4.093556 TGGCAAAAACAAACAAAATCGGTC 59.906 37.500 0.00 0.00 0.00 4.79
3033 7398 1.830477 AGGAGCTTGTGGCAAAAACAA 59.170 42.857 0.00 0.00 44.79 2.83
3035 7400 1.408702 TGAGGAGCTTGTGGCAAAAAC 59.591 47.619 0.00 0.00 44.79 2.43
3062 7437 4.033932 CCGAGCAATATTTCATCGTGTTCA 59.966 41.667 10.92 0.00 0.00 3.18
3077 7452 2.462456 ATGCGTGATATCCGAGCAAT 57.538 45.000 16.92 6.94 41.37 3.56
3082 7457 3.123050 CACTCAAATGCGTGATATCCGA 58.877 45.455 15.11 4.01 32.88 4.55
3087 7462 5.182487 ACCAATACACTCAAATGCGTGATA 58.818 37.500 10.26 0.79 35.01 2.15
3091 7466 3.818210 TCAACCAATACACTCAAATGCGT 59.182 39.130 0.00 0.00 0.00 5.24
3096 7471 7.397892 TTTTCTGTCAACCAATACACTCAAA 57.602 32.000 0.00 0.00 0.00 2.69
3154 7532 5.483937 TCTCTGCTCCAGGTGAATAGTAAAA 59.516 40.000 0.00 0.00 31.51 1.52
3161 7539 1.065564 GCTTCTCTGCTCCAGGTGAAT 60.066 52.381 0.00 0.00 31.51 2.57
3177 7555 4.789012 TTCATTTCTGAACCCATGCTTC 57.211 40.909 0.00 0.00 36.46 3.86
3178 7556 7.124599 TGAATATTCATTTCTGAACCCATGCTT 59.875 33.333 14.23 0.00 43.92 3.91
3182 7560 7.128077 AGGTGAATATTCATTTCTGAACCCAT 58.872 34.615 20.65 0.00 43.92 4.00
3189 7567 9.512435 GATGACAAAGGTGAATATTCATTTCTG 57.488 33.333 20.65 16.76 39.73 3.02
3291 7691 4.146564 CACTCCCATGATCCATATTTGCA 58.853 43.478 0.00 0.00 0.00 4.08
3293 7693 4.989277 TCCACTCCCATGATCCATATTTG 58.011 43.478 0.00 0.00 0.00 2.32
3297 7697 6.069440 GGATTAATCCACTCCCATGATCCATA 60.069 42.308 26.61 0.00 46.38 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.