Multiple sequence alignment - TraesCS7D01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G107600 chr7D 100.000 4540 0 0 1 4540 64695687 64700226 0.000000e+00 8384.0
1 TraesCS7D01G107600 chr7D 84.104 541 71 10 3991 4529 64735303 64735830 4.050000e-140 508.0
2 TraesCS7D01G107600 chr7B 89.582 3782 254 71 735 4458 6177204 6180903 0.000000e+00 4673.0
3 TraesCS7D01G107600 chr7B 84.082 534 72 8 3997 4529 6373685 6374206 1.890000e-138 503.0
4 TraesCS7D01G107600 chr7B 81.353 606 31 30 1 573 6176639 6177195 7.020000e-113 418.0
5 TraesCS7D01G107600 chr7B 82.227 467 71 7 4074 4540 6033428 6033882 4.260000e-105 392.0
6 TraesCS7D01G107600 chr7B 93.462 260 14 2 719 975 462459890 462459631 2.560000e-102 383.0
7 TraesCS7D01G107600 chr7B 84.367 403 30 16 62 437 462460506 462460110 9.280000e-97 364.0
8 TraesCS7D01G107600 chr7B 90.000 90 4 5 41 126 733109305 733109393 1.340000e-20 111.0
9 TraesCS7D01G107600 chr7B 88.406 69 6 2 590 657 462459994 462459927 1.050000e-11 82.4
10 TraesCS7D01G107600 chr7B 100.000 28 0 0 477 504 462460093 462460066 8.000000e-03 52.8
11 TraesCS7D01G107600 chr7A 86.770 3152 219 95 1 3050 68857792 68860847 0.000000e+00 3328.0
12 TraesCS7D01G107600 chr7A 93.688 1505 56 13 3071 4540 68860899 68862399 0.000000e+00 2217.0
13 TraesCS7D01G107600 chr7A 86.395 882 83 18 2974 3845 68898973 68899827 0.000000e+00 929.0
14 TraesCS7D01G107600 chr7A 85.261 536 61 11 3991 4523 68900580 68901100 1.860000e-148 536.0
15 TraesCS7D01G107600 chr7A 86.538 156 15 4 4071 4226 68319730 68319879 2.810000e-37 167.0
16 TraesCS7D01G107600 chr4B 85.481 489 54 8 1827 2309 368832477 368832954 1.130000e-135 494.0
17 TraesCS7D01G107600 chr3B 94.538 238 11 1 740 975 680860143 680859906 2.580000e-97 366.0
18 TraesCS7D01G107600 chr3B 82.506 423 41 14 52 445 680861364 680860946 1.560000e-89 340.0
19 TraesCS7D01G107600 chr3B 98.485 66 1 0 61 126 735796764 735796699 2.870000e-22 117.0
20 TraesCS7D01G107600 chr3B 98.485 66 1 0 61 126 736644414 736644349 2.870000e-22 117.0
21 TraesCS7D01G107600 chrUn 80.531 452 76 8 4075 4526 93881023 93880584 2.020000e-88 337.0
22 TraesCS7D01G107600 chr1B 92.941 85 2 4 46 126 647187182 647187266 2.220000e-23 121.0
23 TraesCS7D01G107600 chr6B 90.698 86 6 1 41 126 648632948 648633031 3.710000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G107600 chr7D 64695687 64700226 4539 False 8384.00 8384 100.00000 1 4540 1 chr7D.!!$F1 4539
1 TraesCS7D01G107600 chr7D 64735303 64735830 527 False 508.00 508 84.10400 3991 4529 1 chr7D.!!$F2 538
2 TraesCS7D01G107600 chr7B 6176639 6180903 4264 False 2545.50 4673 85.46750 1 4458 2 chr7B.!!$F4 4457
3 TraesCS7D01G107600 chr7B 6373685 6374206 521 False 503.00 503 84.08200 3997 4529 1 chr7B.!!$F2 532
4 TraesCS7D01G107600 chr7B 462459631 462460506 875 True 220.55 383 91.55875 62 975 4 chr7B.!!$R1 913
5 TraesCS7D01G107600 chr7A 68857792 68862399 4607 False 2772.50 3328 90.22900 1 4540 2 chr7A.!!$F2 4539
6 TraesCS7D01G107600 chr7A 68898973 68901100 2127 False 732.50 929 85.82800 2974 4523 2 chr7A.!!$F3 1549
7 TraesCS7D01G107600 chr3B 680859906 680861364 1458 True 353.00 366 88.52200 52 975 2 chr3B.!!$R3 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 552 0.034896 GGTTCTTCTCGGGTTCTGCA 59.965 55.0 0.00 0.0 0.0 4.41 F
1973 3047 0.165079 TTTTTCTGCCGCGTCGATTC 59.835 50.0 4.92 0.0 0.0 2.52 F
3428 4558 0.037326 CGGAGCAGAAACCAGTAGCA 60.037 55.0 0.00 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 3097 0.114168 AGGCCACCTAATTTGCACCA 59.886 50.0 5.01 0.0 28.47 4.17 R
3527 4664 0.109597 GCGGGTTTCAAGCAGTGATG 60.110 55.0 0.00 0.0 35.70 3.07 R
4260 6028 1.280982 GAGCGAGCAATCATCGTTCA 58.719 50.0 7.22 0.0 45.92 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.140134 CCTTTCCACCTTCCCTCCCA 61.140 60.000 0.00 0.00 0.00 4.37
29 30 0.329596 CTTTCCACCTTCCCTCCCAG 59.670 60.000 0.00 0.00 0.00 4.45
30 31 1.140134 TTTCCACCTTCCCTCCCAGG 61.140 60.000 0.00 0.00 36.10 4.45
44 46 2.608988 CAGGCTCCCACCACCTCT 60.609 66.667 0.00 0.00 0.00 3.69
260 276 2.751806 GGTACCACTGCGACTACTTAGT 59.248 50.000 7.15 0.00 39.71 2.24
292 308 0.674895 CCCCGCTCCTCTGTTCTTTG 60.675 60.000 0.00 0.00 0.00 2.77
429 475 0.687354 GCTTGGTCAGGTGAGAGGAA 59.313 55.000 0.00 0.00 0.00 3.36
452 498 1.065126 AGAAAGCCCCGATCTTTCCTG 60.065 52.381 15.43 0.00 46.39 3.86
474 520 2.513897 GCCCGAGGGATTTCCGTG 60.514 66.667 13.28 0.00 41.52 4.94
475 521 2.189521 CCCGAGGGATTTCCGTGG 59.810 66.667 0.84 0.00 41.52 4.94
506 552 0.034896 GGTTCTTCTCGGGTTCTGCA 59.965 55.000 0.00 0.00 0.00 4.41
512 558 0.318441 TCTCGGGTTCTGCACTTCTG 59.682 55.000 0.00 0.00 0.00 3.02
513 559 1.294659 CTCGGGTTCTGCACTTCTGC 61.295 60.000 0.00 0.00 44.52 4.26
564 613 2.737376 GACGAGTTGACCCGCCAC 60.737 66.667 0.00 0.00 0.00 5.01
578 627 1.301479 GCCACCCTCGTTCGACTTT 60.301 57.895 0.00 0.00 0.00 2.66
581 630 1.539496 CCACCCTCGTTCGACTTTTGA 60.539 52.381 0.00 0.00 0.00 2.69
582 631 1.792949 CACCCTCGTTCGACTTTTGAG 59.207 52.381 0.00 0.00 0.00 3.02
583 632 1.411612 ACCCTCGTTCGACTTTTGAGT 59.588 47.619 0.00 0.00 0.00 3.41
584 633 2.624838 ACCCTCGTTCGACTTTTGAGTA 59.375 45.455 0.00 0.00 0.00 2.59
585 634 2.985139 CCCTCGTTCGACTTTTGAGTAC 59.015 50.000 0.00 0.00 0.00 2.73
586 635 3.305199 CCCTCGTTCGACTTTTGAGTACT 60.305 47.826 0.00 0.00 0.00 2.73
587 636 4.083110 CCCTCGTTCGACTTTTGAGTACTA 60.083 45.833 0.00 0.00 0.00 1.82
588 637 4.850470 CCTCGTTCGACTTTTGAGTACTAC 59.150 45.833 0.00 0.00 0.00 2.73
589 638 5.334724 CCTCGTTCGACTTTTGAGTACTACT 60.335 44.000 0.00 0.00 0.00 2.57
590 639 6.128445 CCTCGTTCGACTTTTGAGTACTACTA 60.128 42.308 0.00 0.00 0.00 1.82
591 640 6.593978 TCGTTCGACTTTTGAGTACTACTAC 58.406 40.000 0.00 0.00 0.00 2.73
592 641 6.202762 TCGTTCGACTTTTGAGTACTACTACA 59.797 38.462 0.00 0.00 0.00 2.74
593 642 6.519078 CGTTCGACTTTTGAGTACTACTACAG 59.481 42.308 0.00 0.00 0.00 2.74
594 643 7.358830 GTTCGACTTTTGAGTACTACTACAGT 58.641 38.462 0.00 0.00 41.62 3.55
595 644 7.502120 TCGACTTTTGAGTACTACTACAGTT 57.498 36.000 0.00 0.00 38.80 3.16
596 645 7.934457 TCGACTTTTGAGTACTACTACAGTTT 58.066 34.615 0.00 0.00 38.80 2.66
597 646 8.408601 TCGACTTTTGAGTACTACTACAGTTTT 58.591 33.333 0.00 0.00 38.80 2.43
598 647 8.689069 CGACTTTTGAGTACTACTACAGTTTTC 58.311 37.037 0.00 0.00 38.80 2.29
599 648 9.747293 GACTTTTGAGTACTACTACAGTTTTCT 57.253 33.333 0.00 0.00 38.80 2.52
603 652 9.745880 TTTGAGTACTACTACAGTTTTCTTGAG 57.254 33.333 0.00 0.00 38.80 3.02
604 653 8.687292 TGAGTACTACTACAGTTTTCTTGAGA 57.313 34.615 0.00 0.00 38.80 3.27
605 654 9.298250 TGAGTACTACTACAGTTTTCTTGAGAT 57.702 33.333 0.00 0.00 38.80 2.75
633 682 9.862149 TTAGAGAATTAAAGGGTTCAACTTTCT 57.138 29.630 0.00 0.00 38.88 2.52
634 683 8.397575 AGAGAATTAAAGGGTTCAACTTTCTC 57.602 34.615 0.00 0.00 38.88 2.87
635 684 8.221251 AGAGAATTAAAGGGTTCAACTTTCTCT 58.779 33.333 5.73 5.73 38.88 3.10
636 685 8.171164 AGAATTAAAGGGTTCAACTTTCTCTG 57.829 34.615 0.00 0.00 38.88 3.35
637 686 7.780271 AGAATTAAAGGGTTCAACTTTCTCTGT 59.220 33.333 0.00 0.00 38.88 3.41
638 687 7.898014 ATTAAAGGGTTCAACTTTCTCTGTT 57.102 32.000 0.00 0.00 38.88 3.16
639 688 7.712204 TTAAAGGGTTCAACTTTCTCTGTTT 57.288 32.000 0.00 0.00 38.88 2.83
640 689 5.836821 AAGGGTTCAACTTTCTCTGTTTC 57.163 39.130 0.00 0.00 0.00 2.78
641 690 5.117406 AGGGTTCAACTTTCTCTGTTTCT 57.883 39.130 0.00 0.00 0.00 2.52
642 691 5.126779 AGGGTTCAACTTTCTCTGTTTCTC 58.873 41.667 0.00 0.00 0.00 2.87
643 692 4.881850 GGGTTCAACTTTCTCTGTTTCTCA 59.118 41.667 0.00 0.00 0.00 3.27
644 693 5.532779 GGGTTCAACTTTCTCTGTTTCTCAT 59.467 40.000 0.00 0.00 0.00 2.90
645 694 6.433766 GGTTCAACTTTCTCTGTTTCTCATG 58.566 40.000 0.00 0.00 0.00 3.07
646 695 6.038714 GGTTCAACTTTCTCTGTTTCTCATGT 59.961 38.462 0.00 0.00 0.00 3.21
647 696 7.415653 GGTTCAACTTTCTCTGTTTCTCATGTT 60.416 37.037 0.00 0.00 0.00 2.71
648 697 7.630242 TCAACTTTCTCTGTTTCTCATGTTT 57.370 32.000 0.00 0.00 0.00 2.83
649 698 7.697691 TCAACTTTCTCTGTTTCTCATGTTTC 58.302 34.615 0.00 0.00 0.00 2.78
650 699 7.554118 TCAACTTTCTCTGTTTCTCATGTTTCT 59.446 33.333 0.00 0.00 0.00 2.52
651 700 7.256756 ACTTTCTCTGTTTCTCATGTTTCTG 57.743 36.000 0.00 0.00 0.00 3.02
652 701 5.679734 TTCTCTGTTTCTCATGTTTCTGC 57.320 39.130 0.00 0.00 0.00 4.26
653 702 4.965814 TCTCTGTTTCTCATGTTTCTGCT 58.034 39.130 0.00 0.00 0.00 4.24
654 703 5.371526 TCTCTGTTTCTCATGTTTCTGCTT 58.628 37.500 0.00 0.00 0.00 3.91
655 704 5.468072 TCTCTGTTTCTCATGTTTCTGCTTC 59.532 40.000 0.00 0.00 0.00 3.86
656 705 5.371526 TCTGTTTCTCATGTTTCTGCTTCT 58.628 37.500 0.00 0.00 0.00 2.85
657 706 6.524734 TCTGTTTCTCATGTTTCTGCTTCTA 58.475 36.000 0.00 0.00 0.00 2.10
658 707 6.648310 TCTGTTTCTCATGTTTCTGCTTCTAG 59.352 38.462 0.00 0.00 0.00 2.43
659 708 6.291377 TGTTTCTCATGTTTCTGCTTCTAGT 58.709 36.000 0.00 0.00 0.00 2.57
660 709 7.441836 TGTTTCTCATGTTTCTGCTTCTAGTA 58.558 34.615 0.00 0.00 0.00 1.82
661 710 7.931407 TGTTTCTCATGTTTCTGCTTCTAGTAA 59.069 33.333 0.00 0.00 0.00 2.24
662 711 8.940952 GTTTCTCATGTTTCTGCTTCTAGTAAT 58.059 33.333 0.00 0.00 0.00 1.89
663 712 9.507329 TTTCTCATGTTTCTGCTTCTAGTAATT 57.493 29.630 0.00 0.00 0.00 1.40
664 713 8.709386 TCTCATGTTTCTGCTTCTAGTAATTC 57.291 34.615 0.00 0.00 0.00 2.17
665 714 8.314021 TCTCATGTTTCTGCTTCTAGTAATTCA 58.686 33.333 0.00 0.00 0.00 2.57
666 715 8.484641 TCATGTTTCTGCTTCTAGTAATTCAG 57.515 34.615 0.00 0.00 0.00 3.02
667 716 8.314021 TCATGTTTCTGCTTCTAGTAATTCAGA 58.686 33.333 0.00 0.00 0.00 3.27
668 717 8.939929 CATGTTTCTGCTTCTAGTAATTCAGAA 58.060 33.333 0.00 0.00 38.37 3.02
669 718 8.902540 TGTTTCTGCTTCTAGTAATTCAGAAA 57.097 30.769 16.42 16.42 43.77 2.52
671 720 7.907214 TTCTGCTTCTAGTAATTCAGAAACC 57.093 36.000 0.00 0.00 37.54 3.27
672 721 6.407202 TCTGCTTCTAGTAATTCAGAAACCC 58.593 40.000 0.00 0.00 30.68 4.11
673 722 6.213600 TCTGCTTCTAGTAATTCAGAAACCCT 59.786 38.462 0.00 0.00 30.68 4.34
674 723 6.173339 TGCTTCTAGTAATTCAGAAACCCTG 58.827 40.000 0.00 0.00 44.27 4.45
675 724 5.065346 GCTTCTAGTAATTCAGAAACCCTGC 59.935 44.000 0.00 0.00 42.62 4.85
676 725 4.755411 TCTAGTAATTCAGAAACCCTGCG 58.245 43.478 0.00 0.00 42.62 5.18
677 726 3.695830 AGTAATTCAGAAACCCTGCGA 57.304 42.857 0.00 0.00 42.62 5.10
678 727 4.222124 AGTAATTCAGAAACCCTGCGAT 57.778 40.909 0.00 0.00 42.62 4.58
679 728 4.589908 AGTAATTCAGAAACCCTGCGATT 58.410 39.130 0.00 0.00 42.62 3.34
680 729 5.010282 AGTAATTCAGAAACCCTGCGATTT 58.990 37.500 0.00 0.00 42.62 2.17
681 730 4.871933 AATTCAGAAACCCTGCGATTTT 57.128 36.364 0.00 0.00 42.62 1.82
682 731 4.871933 ATTCAGAAACCCTGCGATTTTT 57.128 36.364 0.00 0.00 42.62 1.94
683 732 3.915437 TCAGAAACCCTGCGATTTTTC 57.085 42.857 0.00 0.00 42.62 2.29
684 733 2.556622 TCAGAAACCCTGCGATTTTTCC 59.443 45.455 0.00 0.00 42.62 3.13
685 734 1.539827 AGAAACCCTGCGATTTTTCCG 59.460 47.619 0.00 0.00 0.00 4.30
686 735 0.601057 AAACCCTGCGATTTTTCCGG 59.399 50.000 0.00 0.00 0.00 5.14
687 736 0.538746 AACCCTGCGATTTTTCCGGT 60.539 50.000 0.00 0.00 0.00 5.28
688 737 0.958876 ACCCTGCGATTTTTCCGGTC 60.959 55.000 0.00 0.00 0.00 4.79
689 738 0.676782 CCCTGCGATTTTTCCGGTCT 60.677 55.000 0.00 0.00 0.00 3.85
690 739 1.406341 CCCTGCGATTTTTCCGGTCTA 60.406 52.381 0.00 0.00 0.00 2.59
691 740 1.664151 CCTGCGATTTTTCCGGTCTAC 59.336 52.381 0.00 0.00 0.00 2.59
692 741 2.618053 CTGCGATTTTTCCGGTCTACT 58.382 47.619 0.00 0.00 0.00 2.57
693 742 2.603560 CTGCGATTTTTCCGGTCTACTC 59.396 50.000 0.00 0.00 0.00 2.59
694 743 1.931841 GCGATTTTTCCGGTCTACTCC 59.068 52.381 0.00 0.00 0.00 3.85
695 744 2.418334 GCGATTTTTCCGGTCTACTCCT 60.418 50.000 0.00 0.00 0.00 3.69
696 745 3.187700 CGATTTTTCCGGTCTACTCCTG 58.812 50.000 0.00 0.00 0.00 3.86
697 746 3.119245 CGATTTTTCCGGTCTACTCCTGA 60.119 47.826 0.00 0.00 0.00 3.86
698 747 4.619863 CGATTTTTCCGGTCTACTCCTGAA 60.620 45.833 0.00 0.00 0.00 3.02
699 748 4.903045 TTTTTCCGGTCTACTCCTGAAT 57.097 40.909 0.00 0.00 32.46 2.57
700 749 4.903045 TTTTCCGGTCTACTCCTGAATT 57.097 40.909 0.00 0.00 32.46 2.17
701 750 4.903045 TTTCCGGTCTACTCCTGAATTT 57.097 40.909 0.00 0.00 32.46 1.82
702 751 6.363167 TTTTCCGGTCTACTCCTGAATTTA 57.637 37.500 0.00 0.00 32.46 1.40
703 752 6.555463 TTTCCGGTCTACTCCTGAATTTAT 57.445 37.500 0.00 0.00 32.46 1.40
704 753 5.531122 TCCGGTCTACTCCTGAATTTATG 57.469 43.478 0.00 0.00 0.00 1.90
705 754 4.058817 CCGGTCTACTCCTGAATTTATGC 58.941 47.826 0.00 0.00 0.00 3.14
706 755 4.442893 CCGGTCTACTCCTGAATTTATGCA 60.443 45.833 0.00 0.00 0.00 3.96
707 756 5.300752 CGGTCTACTCCTGAATTTATGCAT 58.699 41.667 3.79 3.79 0.00 3.96
708 757 5.178252 CGGTCTACTCCTGAATTTATGCATG 59.822 44.000 10.16 0.00 0.00 4.06
709 758 6.291377 GGTCTACTCCTGAATTTATGCATGA 58.709 40.000 10.16 0.00 0.00 3.07
710 759 6.426328 GGTCTACTCCTGAATTTATGCATGAG 59.574 42.308 10.16 7.15 34.33 2.90
711 760 6.989169 GTCTACTCCTGAATTTATGCATGAGT 59.011 38.462 10.16 12.76 41.04 3.41
712 761 7.170658 GTCTACTCCTGAATTTATGCATGAGTC 59.829 40.741 10.16 7.39 39.55 3.36
713 762 5.999044 ACTCCTGAATTTATGCATGAGTCT 58.001 37.500 10.16 0.00 35.89 3.24
714 763 6.054295 ACTCCTGAATTTATGCATGAGTCTC 58.946 40.000 10.16 0.20 35.89 3.36
715 764 5.993055 TCCTGAATTTATGCATGAGTCTCA 58.007 37.500 10.16 4.68 0.00 3.27
716 765 6.053650 TCCTGAATTTATGCATGAGTCTCAG 58.946 40.000 10.16 13.61 0.00 3.35
717 766 6.053650 CCTGAATTTATGCATGAGTCTCAGA 58.946 40.000 20.34 0.00 31.49 3.27
718 767 6.203145 CCTGAATTTATGCATGAGTCTCAGAG 59.797 42.308 20.34 4.82 31.49 3.35
719 768 6.881570 TGAATTTATGCATGAGTCTCAGAGA 58.118 36.000 10.16 0.00 0.00 3.10
720 769 6.985059 TGAATTTATGCATGAGTCTCAGAGAG 59.015 38.462 10.16 0.00 0.00 3.20
721 770 6.728089 ATTTATGCATGAGTCTCAGAGAGA 57.272 37.500 10.16 0.00 36.22 3.10
722 771 6.728089 TTTATGCATGAGTCTCAGAGAGAT 57.272 37.500 10.16 0.00 40.98 2.75
723 772 6.728089 TTATGCATGAGTCTCAGAGAGATT 57.272 37.500 10.16 0.00 40.98 2.40
724 773 4.652421 TGCATGAGTCTCAGAGAGATTC 57.348 45.455 8.82 11.28 42.96 2.52
729 778 5.895636 TGAGTCTCAGAGAGATTCAGAAC 57.104 43.478 15.45 0.00 45.71 3.01
730 779 5.320277 TGAGTCTCAGAGAGATTCAGAACA 58.680 41.667 15.45 0.00 45.71 3.18
731 780 5.415389 TGAGTCTCAGAGAGATTCAGAACAG 59.585 44.000 15.45 0.00 45.71 3.16
732 781 4.706476 AGTCTCAGAGAGATTCAGAACAGG 59.294 45.833 0.00 0.00 40.98 4.00
733 782 4.704540 GTCTCAGAGAGATTCAGAACAGGA 59.295 45.833 0.00 0.00 40.98 3.86
880 1897 3.976015 TGTCTCACCCCAAATAAATCCC 58.024 45.455 0.00 0.00 0.00 3.85
881 1898 3.296854 GTCTCACCCCAAATAAATCCCC 58.703 50.000 0.00 0.00 0.00 4.81
971 1994 1.433534 GCAAACTTCGTCTCCTGAGG 58.566 55.000 0.00 0.00 0.00 3.86
1109 2132 1.466856 CTCCACCCACATCAACATGG 58.533 55.000 0.00 0.00 33.82 3.66
1110 2133 1.004628 CTCCACCCACATCAACATGGA 59.995 52.381 0.00 0.00 38.34 3.41
1117 2140 3.526211 CATCAACATGGATGGCCCT 57.474 52.632 0.00 0.00 40.75 5.19
1118 2141 1.784358 CATCAACATGGATGGCCCTT 58.216 50.000 0.00 0.00 40.75 3.95
1119 2142 2.112998 CATCAACATGGATGGCCCTTT 58.887 47.619 0.00 0.00 40.75 3.11
1120 2143 2.323999 TCAACATGGATGGCCCTTTT 57.676 45.000 0.00 0.00 35.38 2.27
1121 2144 2.178580 TCAACATGGATGGCCCTTTTC 58.821 47.619 0.00 0.00 35.38 2.29
1122 2145 2.181975 CAACATGGATGGCCCTTTTCT 58.818 47.619 0.00 0.00 35.38 2.52
1130 2153 5.151454 TGGATGGCCCTTTTCTTTTCTTTA 58.849 37.500 0.00 0.00 35.38 1.85
1149 2172 4.978083 TTACCATACCACTCTCGAGAAC 57.022 45.455 17.36 0.00 0.00 3.01
1154 2177 1.420430 ACCACTCTCGAGAACCCAAA 58.580 50.000 17.36 0.00 0.00 3.28
1155 2178 1.344763 ACCACTCTCGAGAACCCAAAG 59.655 52.381 17.36 5.31 0.00 2.77
1176 2199 7.915397 CCAAAGAGAAAAATATTACCACCATCG 59.085 37.037 0.00 0.00 0.00 3.84
1182 2205 9.057089 AGAAAAATATTACCACCATCGATCTTC 57.943 33.333 0.00 0.00 0.00 2.87
1186 2209 7.730364 ATATTACCACCATCGATCTTCAAAC 57.270 36.000 0.00 0.00 0.00 2.93
1211 2234 3.572642 CCTTTACCCCAAACTTCCAAGT 58.427 45.455 0.00 0.00 42.04 3.16
1213 2236 2.963599 TACCCCAAACTTCCAAGTCC 57.036 50.000 0.00 0.00 38.57 3.85
1252 2281 2.361771 CCCCCTTGCATGCCTTCT 59.638 61.111 16.68 0.00 0.00 2.85
1263 2292 1.747355 CATGCCTTCTAAGCAACCTGG 59.253 52.381 0.00 0.00 44.83 4.45
1321 2350 9.239551 CCACATCATATTCCATCATTATTCAGT 57.760 33.333 0.00 0.00 0.00 3.41
1335 2364 2.759973 CAGTAGCGAGGGCCAGGA 60.760 66.667 6.18 0.00 41.24 3.86
1345 2374 1.150536 GGGCCAGGACAGACAAACA 59.849 57.895 4.39 0.00 0.00 2.83
1346 2375 1.172812 GGGCCAGGACAGACAAACAC 61.173 60.000 4.39 0.00 0.00 3.32
1348 2377 0.179018 GCCAGGACAGACAAACACCT 60.179 55.000 0.00 0.00 0.00 4.00
1350 2379 1.417890 CCAGGACAGACAAACACCTCT 59.582 52.381 0.00 0.00 0.00 3.69
1354 2389 1.604278 GACAGACAAACACCTCTTGCC 59.396 52.381 0.00 0.00 0.00 4.52
1410 2445 8.986929 ATCATAATGGAGGAAAGTAAGAAAGG 57.013 34.615 0.00 0.00 0.00 3.11
1476 2512 1.457303 GCTGACTCGTAGCACAGTTTG 59.543 52.381 0.00 0.00 40.81 2.93
1566 2603 2.703536 TGGAGTTTTGGTCAGCTACTGA 59.296 45.455 0.00 0.00 38.25 3.41
1584 2621 8.387039 AGCTACTGATATCTGTATCTGACCTTA 58.613 37.037 19.38 1.47 38.75 2.69
1588 2625 5.710567 TGATATCTGTATCTGACCTTACCCG 59.289 44.000 3.98 0.00 38.03 5.28
1631 2668 1.620822 GTCAGCTTGGGTGTTGGATT 58.379 50.000 0.00 0.00 32.43 3.01
1640 2699 4.649267 TGGGTGTTGGATTCTGTGATAA 57.351 40.909 0.00 0.00 0.00 1.75
1641 2700 4.991776 TGGGTGTTGGATTCTGTGATAAA 58.008 39.130 0.00 0.00 0.00 1.40
1642 2701 4.764823 TGGGTGTTGGATTCTGTGATAAAC 59.235 41.667 0.00 0.00 0.00 2.01
1643 2702 4.764823 GGGTGTTGGATTCTGTGATAAACA 59.235 41.667 0.00 0.00 37.22 2.83
1644 2703 5.418840 GGGTGTTGGATTCTGTGATAAACAT 59.581 40.000 0.00 0.00 38.39 2.71
1645 2704 6.404734 GGGTGTTGGATTCTGTGATAAACATC 60.405 42.308 0.00 0.00 38.39 3.06
1646 2705 6.150976 GGTGTTGGATTCTGTGATAAACATCA 59.849 38.462 0.00 0.00 38.39 3.07
1647 2706 7.309133 GGTGTTGGATTCTGTGATAAACATCAA 60.309 37.037 0.00 0.00 38.39 2.57
1648 2707 8.081633 GTGTTGGATTCTGTGATAAACATCAAA 58.918 33.333 0.00 0.00 38.39 2.69
1649 2708 8.298854 TGTTGGATTCTGTGATAAACATCAAAG 58.701 33.333 0.00 0.00 38.39 2.77
1650 2709 8.299570 GTTGGATTCTGTGATAAACATCAAAGT 58.700 33.333 5.04 0.00 38.39 2.66
1651 2710 9.513906 TTGGATTCTGTGATAAACATCAAAGTA 57.486 29.630 5.04 0.00 38.39 2.24
1652 2711 9.685276 TGGATTCTGTGATAAACATCAAAGTAT 57.315 29.630 5.04 1.76 38.39 2.12
1670 2729 8.303876 TCAAAGTATTTATTTCTCTTTGGTGGC 58.696 33.333 13.40 0.00 42.60 5.01
1671 2730 6.775594 AGTATTTATTTCTCTTTGGTGGCC 57.224 37.500 0.00 0.00 0.00 5.36
1686 2745 2.205074 GTGGCCGAGTTATGTCATCTG 58.795 52.381 0.00 0.00 0.00 2.90
1691 2750 3.684788 GCCGAGTTATGTCATCTGTGTTT 59.315 43.478 0.00 0.00 0.00 2.83
1695 2754 6.237942 CCGAGTTATGTCATCTGTGTTTGATC 60.238 42.308 0.00 0.00 0.00 2.92
1705 2764 5.247507 TCTGTGTTTGATCTTTTGTGTGG 57.752 39.130 0.00 0.00 0.00 4.17
1706 2765 3.779759 TGTGTTTGATCTTTTGTGTGGC 58.220 40.909 0.00 0.00 0.00 5.01
1707 2766 2.788786 GTGTTTGATCTTTTGTGTGGCG 59.211 45.455 0.00 0.00 0.00 5.69
1773 2836 3.691575 TCAACAACAGTTTGGGTCAGAA 58.308 40.909 0.00 0.00 37.00 3.02
1780 2843 7.057894 ACAACAGTTTGGGTCAGAATAAGTTA 58.942 34.615 0.00 0.00 37.00 2.24
1792 2857 8.874816 GGTCAGAATAAGTTACTGAATTCAGAC 58.125 37.037 36.15 25.56 46.59 3.51
1850 2920 3.181469 ACGGTGTGTGTGTACAAATCTCT 60.181 43.478 0.00 0.00 38.82 3.10
1890 2961 3.181458 TGGACTGGTCTGTGAAAGTAACC 60.181 47.826 0.67 0.00 0.00 2.85
1943 3016 4.137543 ACTTGACTGTTGAATTGGTCCTC 58.862 43.478 0.00 0.00 0.00 3.71
1944 3017 4.141390 ACTTGACTGTTGAATTGGTCCTCT 60.141 41.667 0.00 0.00 0.00 3.69
1953 3027 7.110155 TGTTGAATTGGTCCTCTATAACTTCC 58.890 38.462 0.00 0.00 0.00 3.46
1964 3038 5.294552 CCTCTATAACTTCCTTTTTCTGCCG 59.705 44.000 0.00 0.00 0.00 5.69
1973 3047 0.165079 TTTTTCTGCCGCGTCGATTC 59.835 50.000 4.92 0.00 0.00 2.52
2006 3081 1.134068 GGCCTAACATCCCTTGACTCC 60.134 57.143 0.00 0.00 0.00 3.85
2017 3092 1.699634 CCTTGACTCCTTCCTTGTGGA 59.300 52.381 0.00 0.00 41.36 4.02
2022 3097 2.938956 CTCCTTCCTTGTGGAGTTGT 57.061 50.000 0.00 0.00 44.24 3.32
2023 3098 2.498167 CTCCTTCCTTGTGGAGTTGTG 58.502 52.381 0.00 0.00 44.24 3.33
2024 3099 1.142870 TCCTTCCTTGTGGAGTTGTGG 59.857 52.381 0.00 0.00 44.24 4.17
2025 3100 1.133792 CCTTCCTTGTGGAGTTGTGGT 60.134 52.381 0.00 0.00 44.24 4.16
2026 3101 1.949525 CTTCCTTGTGGAGTTGTGGTG 59.050 52.381 0.00 0.00 44.24 4.17
2031 3106 1.774110 TGTGGAGTTGTGGTGCAAAT 58.226 45.000 0.00 0.00 39.03 2.32
2039 3114 0.965439 TGTGGTGCAAATTAGGTGGC 59.035 50.000 0.00 0.00 0.00 5.01
2078 3153 1.134753 TGGCACAAACTTGCTGTTCTG 59.865 47.619 0.00 0.00 42.56 3.02
2139 3224 6.406093 TGACAATGAAAACTTTTGTTGCTG 57.594 33.333 0.00 0.00 42.67 4.41
2140 3225 5.163874 TGACAATGAAAACTTTTGTTGCTGC 60.164 36.000 0.00 0.00 42.67 5.25
2144 3229 4.819769 TGAAAACTTTTGTTGCTGCTCTT 58.180 34.783 0.00 0.00 42.67 2.85
2145 3230 4.864247 TGAAAACTTTTGTTGCTGCTCTTC 59.136 37.500 0.00 0.00 42.67 2.87
2153 3238 2.551032 TGTTGCTGCTCTTCTTGTCATG 59.449 45.455 0.00 0.00 0.00 3.07
2173 3258 3.371034 TGCCAGCTACAGTCCTGTTATA 58.629 45.455 5.10 0.00 41.83 0.98
2174 3259 3.967326 TGCCAGCTACAGTCCTGTTATAT 59.033 43.478 5.10 0.00 41.83 0.86
2219 3304 5.537674 ACATCCTTGGATGAATTAAGCCATC 59.462 40.000 29.81 9.98 38.66 3.51
2220 3305 5.128033 TCCTTGGATGAATTAAGCCATCA 57.872 39.130 0.00 4.53 40.55 3.07
2222 3307 5.957168 TCCTTGGATGAATTAAGCCATCAAA 59.043 36.000 0.00 12.67 40.55 2.69
2223 3308 6.044682 CCTTGGATGAATTAAGCCATCAAAC 58.955 40.000 0.00 5.51 40.55 2.93
2372 3460 1.467734 CCTGAAGACAATGCAGCACTC 59.532 52.381 0.00 0.00 0.00 3.51
2425 3513 1.508808 TTTCGGCGCCACAAGGTAAC 61.509 55.000 28.98 0.00 37.19 2.50
2444 3532 3.465122 ACATCGACAATTTACCGCAAC 57.535 42.857 0.00 0.00 0.00 4.17
2473 3561 2.561733 TCTACTGTTTGATCGAGCGG 57.438 50.000 4.16 4.16 0.00 5.52
2474 3562 1.816835 TCTACTGTTTGATCGAGCGGT 59.183 47.619 14.92 14.92 0.00 5.68
2475 3563 3.011818 TCTACTGTTTGATCGAGCGGTA 58.988 45.455 15.49 15.49 0.00 4.02
2476 3564 2.279582 ACTGTTTGATCGAGCGGTAG 57.720 50.000 9.41 0.00 0.00 3.18
2478 3566 0.892755 TGTTTGATCGAGCGGTAGGT 59.107 50.000 0.00 0.00 0.00 3.08
2484 3574 3.072211 TGATCGAGCGGTAGGTACATAG 58.928 50.000 0.00 0.00 0.00 2.23
2499 3589 6.357367 AGGTACATAGTGCATTTTCCCTAAG 58.643 40.000 0.00 0.00 0.00 2.18
2512 3602 8.470002 GCATTTTCCCTAAGTAATCATCACTTT 58.530 33.333 0.00 0.00 37.42 2.66
2562 3652 3.328050 CCTGAGGGGAGTTAAAAGACTGT 59.672 47.826 0.00 0.00 37.23 3.55
2573 3663 3.457610 AAAAGACTGTGCATTGTTGGG 57.542 42.857 0.00 0.00 0.00 4.12
2600 3690 3.679389 CAATCCAGTTACCAAGCAGACT 58.321 45.455 0.00 0.00 0.00 3.24
2678 3768 1.514678 GGCGTGCTTTCATGGTCACA 61.515 55.000 0.00 0.00 0.00 3.58
2687 3777 1.003355 CATGGTCACAGAAGGGCGT 60.003 57.895 0.00 0.00 0.00 5.68
2714 3804 5.352016 CAGGAAGAAGAAGCAAGAGAATCAG 59.648 44.000 0.00 0.00 37.82 2.90
2800 3890 7.715265 TTTGTCATCAGAAAGTTACTCTCAC 57.285 36.000 0.00 0.00 0.00 3.51
2803 3893 5.347364 GTCATCAGAAAGTTACTCTCACTGC 59.653 44.000 0.00 0.00 33.09 4.40
2811 3901 5.394224 AGTTACTCTCACTGCCTAACTTC 57.606 43.478 0.00 0.00 0.00 3.01
2855 3945 6.863126 AGTTCCTTGACATTTTATTTTGCTCG 59.137 34.615 0.00 0.00 0.00 5.03
2879 3969 3.613671 CGGCATGTTTTTATCAGGTTGCA 60.614 43.478 0.00 0.00 0.00 4.08
2897 3987 1.303309 CATGGAATGGAGGCTCGAAC 58.697 55.000 8.69 3.65 41.79 3.95
3006 4097 4.353777 TCAGGTTCAGACTGGCTACTAAT 58.646 43.478 1.81 0.00 36.62 1.73
3018 4109 3.243535 TGGCTACTAATCTCACATCGCAG 60.244 47.826 0.00 0.00 0.00 5.18
3050 4179 2.557924 TGCAACAGTTCATGCCTAAAGG 59.442 45.455 0.00 0.00 41.87 3.11
3056 4185 5.003804 ACAGTTCATGCCTAAAGGTTGTAG 58.996 41.667 0.00 0.00 37.57 2.74
3059 4188 3.609853 TCATGCCTAAAGGTTGTAGCAG 58.390 45.455 0.00 0.00 37.57 4.24
3069 4198 4.664150 AGGTTGTAGCAGCTTCTCTATC 57.336 45.455 0.00 0.00 0.00 2.08
3079 4208 6.012113 AGCAGCTTCTCTATCTGTATCTCAT 58.988 40.000 0.00 0.00 0.00 2.90
3103 4233 8.506437 CATTGATTATAAACCATATGTCGCACT 58.494 33.333 1.24 0.00 0.00 4.40
3105 4235 7.441836 TGATTATAAACCATATGTCGCACTCT 58.558 34.615 1.24 0.00 0.00 3.24
3106 4236 7.931407 TGATTATAAACCATATGTCGCACTCTT 59.069 33.333 1.24 0.00 0.00 2.85
3107 4237 9.419297 GATTATAAACCATATGTCGCACTCTTA 57.581 33.333 1.24 0.00 0.00 2.10
3108 4238 9.772973 ATTATAAACCATATGTCGCACTCTTAA 57.227 29.630 1.24 0.00 0.00 1.85
3400 4530 0.875059 CCTGACAAGAAGAAACCGGC 59.125 55.000 0.00 0.00 0.00 6.13
3428 4558 0.037326 CGGAGCAGAAACCAGTAGCA 60.037 55.000 0.00 0.00 0.00 3.49
3644 4782 7.801716 TTGTCTCTTACATTGCTGTTTTACT 57.198 32.000 0.00 0.00 38.10 2.24
3648 4786 6.426937 TCTCTTACATTGCTGTTTTACTGGAC 59.573 38.462 0.00 0.00 36.79 4.02
3725 4863 3.827722 TGAGAGTGGTTTTTGGTTAGGG 58.172 45.455 0.00 0.00 0.00 3.53
3845 4991 9.734620 TCTCTGTTCATGACAAAATTTTAACTG 57.265 29.630 2.44 7.61 37.93 3.16
4031 5799 7.095481 GCATTTGGAATTTTCTCTTCTTTCCAC 60.095 37.037 2.34 0.00 44.02 4.02
4246 6014 3.314331 CTGCACCCCGGTGTCTCT 61.314 66.667 15.14 0.00 46.90 3.10
4380 6148 2.124320 ACCGATGGATTTGGGGCG 60.124 61.111 0.00 0.00 32.37 6.13
4395 6163 3.723348 GCGTCCGGGTTCTTGTGC 61.723 66.667 0.00 0.00 0.00 4.57
4458 6232 3.470888 CAGGTGGGCGTAGGGGAG 61.471 72.222 0.00 0.00 0.00 4.30
4507 6281 2.159170 GGAGTACTGCTCGAGAATGCTT 60.159 50.000 18.75 0.00 45.03 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.284995 GAGAGGTGGTGGGAGCCT 60.285 66.667 0.00 0.00 34.93 4.58
29 30 3.403558 GGAGAGGTGGTGGGAGCC 61.404 72.222 0.00 0.00 0.00 4.70
30 31 2.284995 AGGAGAGGTGGTGGGAGC 60.285 66.667 0.00 0.00 0.00 4.70
369 415 4.592192 ATCGGACGCATGGCTCCG 62.592 66.667 17.22 17.22 44.37 4.63
370 416 1.819632 AAATCGGACGCATGGCTCC 60.820 57.895 0.00 0.00 0.00 4.70
429 475 2.356227 GGAAAGATCGGGGCTTTCTTCT 60.356 50.000 18.20 0.00 46.45 2.85
452 498 4.129148 AAATCCCTCGGGCCCTGC 62.129 66.667 22.43 0.00 34.68 4.85
464 510 1.677633 CACCCACCCACGGAAATCC 60.678 63.158 0.00 0.00 0.00 3.01
474 520 4.295199 GAACCCACCCACCCACCC 62.295 72.222 0.00 0.00 0.00 4.61
475 521 2.708593 GAAGAACCCACCCACCCACC 62.709 65.000 0.00 0.00 0.00 4.61
506 552 1.811359 GCAGCAAATCAGAGCAGAAGT 59.189 47.619 0.00 0.00 0.00 3.01
512 558 1.379576 AGGGGCAGCAAATCAGAGC 60.380 57.895 0.00 0.00 0.00 4.09
513 559 0.323178 ACAGGGGCAGCAAATCAGAG 60.323 55.000 0.00 0.00 0.00 3.35
564 613 2.150397 ACTCAAAAGTCGAACGAGGG 57.850 50.000 0.00 0.00 0.00 4.30
573 622 9.747293 AGAAAACTGTAGTAGTACTCAAAAGTC 57.253 33.333 5.96 0.00 39.18 3.01
578 627 9.128404 TCTCAAGAAAACTGTAGTAGTACTCAA 57.872 33.333 5.96 0.00 39.18 3.02
607 656 9.862149 AGAAAGTTGAACCCTTTAATTCTCTAA 57.138 29.630 0.00 0.00 32.47 2.10
608 657 9.503399 GAGAAAGTTGAACCCTTTAATTCTCTA 57.497 33.333 0.00 0.00 38.02 2.43
609 658 8.221251 AGAGAAAGTTGAACCCTTTAATTCTCT 58.779 33.333 8.06 8.06 43.29 3.10
610 659 8.293157 CAGAGAAAGTTGAACCCTTTAATTCTC 58.707 37.037 0.00 0.00 40.14 2.87
611 660 7.780271 ACAGAGAAAGTTGAACCCTTTAATTCT 59.220 33.333 0.00 0.00 32.47 2.40
612 661 7.941919 ACAGAGAAAGTTGAACCCTTTAATTC 58.058 34.615 0.00 0.00 32.47 2.17
613 662 7.898014 ACAGAGAAAGTTGAACCCTTTAATT 57.102 32.000 0.00 0.00 32.47 1.40
614 663 7.898014 AACAGAGAAAGTTGAACCCTTTAAT 57.102 32.000 0.00 0.00 32.47 1.40
615 664 7.614192 AGAAACAGAGAAAGTTGAACCCTTTAA 59.386 33.333 0.00 0.00 32.47 1.52
616 665 7.116736 AGAAACAGAGAAAGTTGAACCCTTTA 58.883 34.615 0.00 0.00 32.47 1.85
617 666 5.952347 AGAAACAGAGAAAGTTGAACCCTTT 59.048 36.000 0.00 0.00 34.93 3.11
618 667 5.510430 AGAAACAGAGAAAGTTGAACCCTT 58.490 37.500 0.00 0.00 0.00 3.95
619 668 5.117406 AGAAACAGAGAAAGTTGAACCCT 57.883 39.130 0.00 0.00 0.00 4.34
620 669 4.881850 TGAGAAACAGAGAAAGTTGAACCC 59.118 41.667 0.00 0.00 0.00 4.11
621 670 6.038714 ACATGAGAAACAGAGAAAGTTGAACC 59.961 38.462 0.00 0.00 0.00 3.62
622 671 7.020914 ACATGAGAAACAGAGAAAGTTGAAC 57.979 36.000 0.00 0.00 0.00 3.18
623 672 7.630242 AACATGAGAAACAGAGAAAGTTGAA 57.370 32.000 0.00 0.00 0.00 2.69
624 673 7.554118 AGAAACATGAGAAACAGAGAAAGTTGA 59.446 33.333 0.00 0.00 0.00 3.18
625 674 7.642978 CAGAAACATGAGAAACAGAGAAAGTTG 59.357 37.037 0.00 0.00 0.00 3.16
626 675 7.680588 GCAGAAACATGAGAAACAGAGAAAGTT 60.681 37.037 0.00 0.00 0.00 2.66
627 676 6.238593 GCAGAAACATGAGAAACAGAGAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
628 677 6.017275 AGCAGAAACATGAGAAACAGAGAAAG 60.017 38.462 0.00 0.00 0.00 2.62
629 678 5.824624 AGCAGAAACATGAGAAACAGAGAAA 59.175 36.000 0.00 0.00 0.00 2.52
630 679 5.371526 AGCAGAAACATGAGAAACAGAGAA 58.628 37.500 0.00 0.00 0.00 2.87
631 680 4.965814 AGCAGAAACATGAGAAACAGAGA 58.034 39.130 0.00 0.00 0.00 3.10
632 681 5.469421 AGAAGCAGAAACATGAGAAACAGAG 59.531 40.000 0.00 0.00 0.00 3.35
633 682 5.371526 AGAAGCAGAAACATGAGAAACAGA 58.628 37.500 0.00 0.00 0.00 3.41
634 683 5.686159 AGAAGCAGAAACATGAGAAACAG 57.314 39.130 0.00 0.00 0.00 3.16
635 684 6.291377 ACTAGAAGCAGAAACATGAGAAACA 58.709 36.000 0.00 0.00 0.00 2.83
636 685 6.793492 ACTAGAAGCAGAAACATGAGAAAC 57.207 37.500 0.00 0.00 0.00 2.78
637 686 9.507329 AATTACTAGAAGCAGAAACATGAGAAA 57.493 29.630 0.00 0.00 0.00 2.52
638 687 9.155975 GAATTACTAGAAGCAGAAACATGAGAA 57.844 33.333 0.00 0.00 0.00 2.87
639 688 8.314021 TGAATTACTAGAAGCAGAAACATGAGA 58.686 33.333 0.00 0.00 0.00 3.27
640 689 8.484641 TGAATTACTAGAAGCAGAAACATGAG 57.515 34.615 0.00 0.00 0.00 2.90
641 690 8.314021 TCTGAATTACTAGAAGCAGAAACATGA 58.686 33.333 0.00 0.00 30.26 3.07
642 691 8.484641 TCTGAATTACTAGAAGCAGAAACATG 57.515 34.615 0.00 0.00 30.26 3.21
643 692 9.507329 TTTCTGAATTACTAGAAGCAGAAACAT 57.493 29.630 17.92 0.00 43.39 2.71
644 693 8.902540 TTTCTGAATTACTAGAAGCAGAAACA 57.097 30.769 17.92 6.48 43.39 2.83
646 695 7.390718 GGGTTTCTGAATTACTAGAAGCAGAAA 59.609 37.037 17.92 17.92 44.97 2.52
647 696 6.879458 GGGTTTCTGAATTACTAGAAGCAGAA 59.121 38.462 0.00 0.00 39.70 3.02
648 697 6.213600 AGGGTTTCTGAATTACTAGAAGCAGA 59.786 38.462 0.00 0.00 36.31 4.26
649 698 6.314896 CAGGGTTTCTGAATTACTAGAAGCAG 59.685 42.308 0.00 0.00 46.18 4.24
650 699 6.173339 CAGGGTTTCTGAATTACTAGAAGCA 58.827 40.000 0.00 0.00 46.18 3.91
651 700 5.065346 GCAGGGTTTCTGAATTACTAGAAGC 59.935 44.000 0.00 0.00 46.18 3.86
652 701 5.292101 CGCAGGGTTTCTGAATTACTAGAAG 59.708 44.000 0.00 0.00 46.18 2.85
653 702 5.046878 TCGCAGGGTTTCTGAATTACTAGAA 60.047 40.000 0.00 0.00 46.18 2.10
654 703 4.464951 TCGCAGGGTTTCTGAATTACTAGA 59.535 41.667 0.00 0.00 46.18 2.43
655 704 4.755411 TCGCAGGGTTTCTGAATTACTAG 58.245 43.478 0.00 0.00 46.18 2.57
656 705 4.811969 TCGCAGGGTTTCTGAATTACTA 57.188 40.909 0.00 0.00 46.18 1.82
657 706 3.695830 TCGCAGGGTTTCTGAATTACT 57.304 42.857 0.00 0.00 46.18 2.24
658 707 4.965119 AATCGCAGGGTTTCTGAATTAC 57.035 40.909 0.00 0.00 46.18 1.89
659 708 5.975693 AAAATCGCAGGGTTTCTGAATTA 57.024 34.783 0.00 0.00 46.18 1.40
660 709 4.871933 AAAATCGCAGGGTTTCTGAATT 57.128 36.364 0.00 0.00 46.18 2.17
661 710 4.321974 GGAAAAATCGCAGGGTTTCTGAAT 60.322 41.667 0.00 0.00 46.18 2.57
662 711 3.005367 GGAAAAATCGCAGGGTTTCTGAA 59.995 43.478 0.00 0.00 46.18 3.02
663 712 2.556622 GGAAAAATCGCAGGGTTTCTGA 59.443 45.455 0.00 0.00 46.18 3.27
664 713 2.668279 CGGAAAAATCGCAGGGTTTCTG 60.668 50.000 0.00 0.00 46.03 3.02
665 714 1.539827 CGGAAAAATCGCAGGGTTTCT 59.460 47.619 0.00 0.00 31.94 2.52
666 715 1.402325 CCGGAAAAATCGCAGGGTTTC 60.402 52.381 0.00 0.00 0.00 2.78
667 716 0.601057 CCGGAAAAATCGCAGGGTTT 59.399 50.000 0.00 0.00 0.00 3.27
668 717 0.538746 ACCGGAAAAATCGCAGGGTT 60.539 50.000 9.46 0.00 0.00 4.11
669 718 0.958876 GACCGGAAAAATCGCAGGGT 60.959 55.000 9.46 0.00 0.00 4.34
670 719 0.676782 AGACCGGAAAAATCGCAGGG 60.677 55.000 9.46 0.00 0.00 4.45
671 720 1.664151 GTAGACCGGAAAAATCGCAGG 59.336 52.381 9.46 0.00 0.00 4.85
672 721 2.603560 GAGTAGACCGGAAAAATCGCAG 59.396 50.000 9.46 0.00 0.00 5.18
673 722 2.613691 GAGTAGACCGGAAAAATCGCA 58.386 47.619 9.46 0.00 0.00 5.10
674 723 1.931841 GGAGTAGACCGGAAAAATCGC 59.068 52.381 9.46 0.00 0.00 4.58
675 724 3.119245 TCAGGAGTAGACCGGAAAAATCG 60.119 47.826 9.46 0.00 31.83 3.34
676 725 4.467198 TCAGGAGTAGACCGGAAAAATC 57.533 45.455 9.46 0.46 31.83 2.17
677 726 4.903045 TTCAGGAGTAGACCGGAAAAAT 57.097 40.909 9.46 0.00 40.10 1.82
678 727 4.903045 ATTCAGGAGTAGACCGGAAAAA 57.097 40.909 9.46 0.00 44.32 1.94
679 728 4.903045 AATTCAGGAGTAGACCGGAAAA 57.097 40.909 9.46 0.00 44.32 2.29
680 729 4.903045 AAATTCAGGAGTAGACCGGAAA 57.097 40.909 9.46 0.00 44.32 3.13
681 730 5.684030 GCATAAATTCAGGAGTAGACCGGAA 60.684 44.000 9.46 0.00 44.95 4.30
682 731 4.202223 GCATAAATTCAGGAGTAGACCGGA 60.202 45.833 9.46 0.00 34.73 5.14
683 732 4.058817 GCATAAATTCAGGAGTAGACCGG 58.941 47.826 0.00 0.00 34.73 5.28
684 733 4.693283 TGCATAAATTCAGGAGTAGACCG 58.307 43.478 0.00 0.00 34.73 4.79
685 734 6.291377 TCATGCATAAATTCAGGAGTAGACC 58.709 40.000 0.00 0.00 0.00 3.85
686 735 7.418840 CTCATGCATAAATTCAGGAGTAGAC 57.581 40.000 0.00 0.00 36.65 2.59
691 740 6.053650 TGAGACTCATGCATAAATTCAGGAG 58.946 40.000 0.00 1.59 44.06 3.69
692 741 5.993055 TGAGACTCATGCATAAATTCAGGA 58.007 37.500 0.00 0.00 0.00 3.86
693 742 6.053650 TCTGAGACTCATGCATAAATTCAGG 58.946 40.000 18.97 0.37 32.52 3.86
694 743 6.985059 TCTCTGAGACTCATGCATAAATTCAG 59.015 38.462 5.42 15.65 0.00 3.02
695 744 6.881570 TCTCTGAGACTCATGCATAAATTCA 58.118 36.000 5.42 0.00 0.00 2.57
696 745 7.208777 TCTCTCTGAGACTCATGCATAAATTC 58.791 38.462 5.42 0.00 33.35 2.17
697 746 7.122138 TCTCTCTGAGACTCATGCATAAATT 57.878 36.000 5.42 0.00 33.35 1.82
698 747 6.728089 TCTCTCTGAGACTCATGCATAAAT 57.272 37.500 5.42 0.00 33.35 1.40
699 748 6.728089 ATCTCTCTGAGACTCATGCATAAA 57.272 37.500 5.42 0.00 41.76 1.40
700 749 6.323225 TGAATCTCTCTGAGACTCATGCATAA 59.677 38.462 5.42 0.00 39.49 1.90
701 750 5.832060 TGAATCTCTCTGAGACTCATGCATA 59.168 40.000 5.42 0.00 39.49 3.14
702 751 4.650131 TGAATCTCTCTGAGACTCATGCAT 59.350 41.667 5.42 0.00 39.49 3.96
703 752 4.021916 TGAATCTCTCTGAGACTCATGCA 58.978 43.478 5.42 0.00 39.49 3.96
704 753 4.338964 TCTGAATCTCTCTGAGACTCATGC 59.661 45.833 5.42 0.00 42.62 4.06
705 754 6.127675 TGTTCTGAATCTCTCTGAGACTCATG 60.128 42.308 5.42 2.57 42.62 3.07
706 755 5.951148 TGTTCTGAATCTCTCTGAGACTCAT 59.049 40.000 5.42 0.00 42.62 2.90
707 756 5.320277 TGTTCTGAATCTCTCTGAGACTCA 58.680 41.667 2.58 4.78 41.60 3.41
708 757 5.163622 CCTGTTCTGAATCTCTCTGAGACTC 60.164 48.000 2.58 0.00 41.76 3.36
709 758 4.706476 CCTGTTCTGAATCTCTCTGAGACT 59.294 45.833 2.58 0.00 41.76 3.24
710 759 4.704540 TCCTGTTCTGAATCTCTCTGAGAC 59.295 45.833 2.58 0.00 41.76 3.36
711 760 4.704540 GTCCTGTTCTGAATCTCTCTGAGA 59.295 45.833 7.24 7.24 43.20 3.27
712 761 4.462132 TGTCCTGTTCTGAATCTCTCTGAG 59.538 45.833 0.00 0.00 33.93 3.35
713 762 4.219507 GTGTCCTGTTCTGAATCTCTCTGA 59.780 45.833 0.00 0.00 0.00 3.27
714 763 4.220382 AGTGTCCTGTTCTGAATCTCTCTG 59.780 45.833 0.00 0.00 0.00 3.35
715 764 4.220382 CAGTGTCCTGTTCTGAATCTCTCT 59.780 45.833 0.00 0.00 33.80 3.10
716 765 4.219507 TCAGTGTCCTGTTCTGAATCTCTC 59.780 45.833 0.00 0.00 39.82 3.20
717 766 4.155709 TCAGTGTCCTGTTCTGAATCTCT 58.844 43.478 0.00 0.00 39.82 3.10
718 767 4.527509 TCAGTGTCCTGTTCTGAATCTC 57.472 45.455 0.00 0.00 39.82 2.75
719 768 4.346418 AGTTCAGTGTCCTGTTCTGAATCT 59.654 41.667 9.46 6.72 45.55 2.40
720 769 4.636249 AGTTCAGTGTCCTGTTCTGAATC 58.364 43.478 9.46 5.02 45.55 2.52
721 770 4.696479 AGTTCAGTGTCCTGTTCTGAAT 57.304 40.909 9.46 0.00 45.55 2.57
722 771 4.191544 CAAGTTCAGTGTCCTGTTCTGAA 58.808 43.478 0.00 0.00 43.09 3.02
723 772 3.197766 ACAAGTTCAGTGTCCTGTTCTGA 59.802 43.478 0.00 0.00 39.82 3.27
724 773 3.535561 ACAAGTTCAGTGTCCTGTTCTG 58.464 45.455 0.00 0.00 39.82 3.02
725 774 3.914426 ACAAGTTCAGTGTCCTGTTCT 57.086 42.857 0.00 0.00 39.82 3.01
726 775 3.938963 TGAACAAGTTCAGTGTCCTGTTC 59.061 43.478 11.34 17.23 43.90 3.18
727 776 3.950397 TGAACAAGTTCAGTGTCCTGTT 58.050 40.909 11.34 5.33 43.90 3.16
728 777 3.627395 TGAACAAGTTCAGTGTCCTGT 57.373 42.857 11.34 0.00 43.90 4.00
814 1827 1.824230 GGTGCAACATGGGCTTGAATA 59.176 47.619 12.08 0.00 39.98 1.75
880 1897 9.562408 GAAAGGGAAAGGAGAGTAAATTATAGG 57.438 37.037 0.00 0.00 0.00 2.57
971 1994 0.313043 TTCGTCGACCAGGAGTTCAC 59.687 55.000 10.58 0.00 0.00 3.18
1109 2132 5.011635 TGGTAAAGAAAAGAAAAGGGCCATC 59.988 40.000 6.18 0.33 0.00 3.51
1110 2133 4.904853 TGGTAAAGAAAAGAAAAGGGCCAT 59.095 37.500 6.18 0.00 0.00 4.40
1112 2135 4.948341 TGGTAAAGAAAAGAAAAGGGCC 57.052 40.909 0.00 0.00 0.00 5.80
1113 2136 6.014925 TGGTATGGTAAAGAAAAGAAAAGGGC 60.015 38.462 0.00 0.00 0.00 5.19
1114 2137 7.232737 AGTGGTATGGTAAAGAAAAGAAAAGGG 59.767 37.037 0.00 0.00 0.00 3.95
1115 2138 8.178313 AGTGGTATGGTAAAGAAAAGAAAAGG 57.822 34.615 0.00 0.00 0.00 3.11
1116 2139 9.067986 AGAGTGGTATGGTAAAGAAAAGAAAAG 57.932 33.333 0.00 0.00 0.00 2.27
1117 2140 8.990163 AGAGTGGTATGGTAAAGAAAAGAAAA 57.010 30.769 0.00 0.00 0.00 2.29
1118 2141 7.386848 CGAGAGTGGTATGGTAAAGAAAAGAAA 59.613 37.037 0.00 0.00 0.00 2.52
1119 2142 6.872020 CGAGAGTGGTATGGTAAAGAAAAGAA 59.128 38.462 0.00 0.00 0.00 2.52
1120 2143 6.209986 TCGAGAGTGGTATGGTAAAGAAAAGA 59.790 38.462 0.00 0.00 0.00 2.52
1121 2144 6.395629 TCGAGAGTGGTATGGTAAAGAAAAG 58.604 40.000 0.00 0.00 0.00 2.27
1122 2145 6.209986 TCTCGAGAGTGGTATGGTAAAGAAAA 59.790 38.462 12.08 0.00 0.00 2.29
1130 2153 2.100989 GGTTCTCGAGAGTGGTATGGT 58.899 52.381 15.94 0.00 0.00 3.55
1149 2172 7.475137 TGGTGGTAATATTTTTCTCTTTGGG 57.525 36.000 0.00 0.00 0.00 4.12
1154 2177 8.432805 AGATCGATGGTGGTAATATTTTTCTCT 58.567 33.333 0.54 0.00 0.00 3.10
1155 2178 8.608844 AGATCGATGGTGGTAATATTTTTCTC 57.391 34.615 0.54 0.00 0.00 2.87
1176 2199 4.270834 GGGTAAAGGGAGGTTTGAAGATC 58.729 47.826 0.00 0.00 0.00 2.75
1182 2205 2.631062 GTTTGGGGTAAAGGGAGGTTTG 59.369 50.000 0.00 0.00 0.00 2.93
1186 2209 2.556782 GGAAGTTTGGGGTAAAGGGAGG 60.557 54.545 0.00 0.00 0.00 4.30
1211 2234 2.772191 AGGGTGTGGTGTGCAGGA 60.772 61.111 0.00 0.00 0.00 3.86
1213 2236 1.893808 GTCAGGGTGTGGTGTGCAG 60.894 63.158 0.00 0.00 0.00 4.41
1252 2281 4.380843 TTCTTTCATCCCAGGTTGCTTA 57.619 40.909 0.00 0.00 0.00 3.09
1263 2292 5.039333 CGATGGCATCTTTTTCTTTCATCC 58.961 41.667 23.97 0.00 0.00 3.51
1321 2350 2.759973 CTGTCCTGGCCCTCGCTA 60.760 66.667 0.00 0.00 34.44 4.26
1335 2364 1.680338 GGCAAGAGGTGTTTGTCTGT 58.320 50.000 0.00 0.00 0.00 3.41
1354 2389 0.317269 CAAGTCACCAAGTTGCAGCG 60.317 55.000 0.00 0.00 31.74 5.18
1410 2445 1.864082 CCATCGGCAAACAAACCAAAC 59.136 47.619 0.00 0.00 0.00 2.93
1476 2512 0.600255 CAACACCCACCTCGACAGAC 60.600 60.000 0.00 0.00 0.00 3.51
1486 2523 0.603065 GAATCCAAGCCAACACCCAC 59.397 55.000 0.00 0.00 0.00 4.61
1519 2556 4.065281 GCAGGCAAGCAAGCAGGG 62.065 66.667 2.78 0.00 35.83 4.45
1520 2557 4.415332 CGCAGGCAAGCAAGCAGG 62.415 66.667 8.32 0.00 35.83 4.85
1521 2558 3.667282 ACGCAGGCAAGCAAGCAG 61.667 61.111 8.32 4.38 35.83 4.24
1525 2562 1.823470 AAGACACGCAGGCAAGCAA 60.823 52.632 2.94 0.00 0.00 3.91
1566 2603 4.463186 GCGGGTAAGGTCAGATACAGATAT 59.537 45.833 0.00 0.00 0.00 1.63
1584 2621 4.021925 GTCCTGAAGCCAGCGGGT 62.022 66.667 4.36 0.00 39.07 5.28
1588 2625 1.739562 CAGACGTCCTGAAGCCAGC 60.740 63.158 13.01 0.00 45.78 4.85
1618 2655 3.524095 ATCACAGAATCCAACACCCAA 57.476 42.857 0.00 0.00 0.00 4.12
1620 2657 4.764823 TGTTTATCACAGAATCCAACACCC 59.235 41.667 0.00 0.00 0.00 4.61
1644 2703 8.303876 GCCACCAAAGAGAAATAAATACTTTGA 58.696 33.333 16.09 0.00 45.45 2.69
1645 2704 7.545615 GGCCACCAAAGAGAAATAAATACTTTG 59.454 37.037 0.00 0.00 43.61 2.77
1646 2705 7.576856 CGGCCACCAAAGAGAAATAAATACTTT 60.577 37.037 2.24 0.00 0.00 2.66
1647 2706 6.127730 CGGCCACCAAAGAGAAATAAATACTT 60.128 38.462 2.24 0.00 0.00 2.24
1648 2707 5.357032 CGGCCACCAAAGAGAAATAAATACT 59.643 40.000 2.24 0.00 0.00 2.12
1649 2708 5.355910 TCGGCCACCAAAGAGAAATAAATAC 59.644 40.000 2.24 0.00 0.00 1.89
1650 2709 5.502079 TCGGCCACCAAAGAGAAATAAATA 58.498 37.500 2.24 0.00 0.00 1.40
1651 2710 4.340617 TCGGCCACCAAAGAGAAATAAAT 58.659 39.130 2.24 0.00 0.00 1.40
1652 2711 3.756434 CTCGGCCACCAAAGAGAAATAAA 59.244 43.478 2.24 0.00 32.84 1.40
1653 2712 3.244770 ACTCGGCCACCAAAGAGAAATAA 60.245 43.478 2.24 0.00 34.98 1.40
1654 2713 2.304761 ACTCGGCCACCAAAGAGAAATA 59.695 45.455 2.24 0.00 34.98 1.40
1655 2714 1.073923 ACTCGGCCACCAAAGAGAAAT 59.926 47.619 2.24 0.00 34.98 2.17
1656 2715 0.472471 ACTCGGCCACCAAAGAGAAA 59.528 50.000 2.24 0.00 34.98 2.52
1657 2716 0.472471 AACTCGGCCACCAAAGAGAA 59.528 50.000 2.24 0.00 34.98 2.87
1658 2717 1.344065 TAACTCGGCCACCAAAGAGA 58.656 50.000 2.24 0.00 34.98 3.10
1659 2718 2.009774 CATAACTCGGCCACCAAAGAG 58.990 52.381 2.24 2.04 36.83 2.85
1660 2719 1.349688 ACATAACTCGGCCACCAAAGA 59.650 47.619 2.24 0.00 0.00 2.52
1661 2720 1.737793 GACATAACTCGGCCACCAAAG 59.262 52.381 2.24 0.00 0.00 2.77
1662 2721 1.072489 TGACATAACTCGGCCACCAAA 59.928 47.619 2.24 0.00 0.00 3.28
1663 2722 0.687920 TGACATAACTCGGCCACCAA 59.312 50.000 2.24 0.00 0.00 3.67
1664 2723 0.908910 ATGACATAACTCGGCCACCA 59.091 50.000 2.24 0.00 0.00 4.17
1665 2724 1.139058 AGATGACATAACTCGGCCACC 59.861 52.381 2.24 0.00 0.00 4.61
1666 2725 2.205074 CAGATGACATAACTCGGCCAC 58.795 52.381 2.24 0.00 0.00 5.01
1667 2726 1.831106 ACAGATGACATAACTCGGCCA 59.169 47.619 2.24 0.00 0.00 5.36
1668 2727 2.205074 CACAGATGACATAACTCGGCC 58.795 52.381 0.00 0.00 0.00 6.13
1669 2728 2.893637 ACACAGATGACATAACTCGGC 58.106 47.619 0.00 0.00 0.00 5.54
1670 2729 4.929211 TCAAACACAGATGACATAACTCGG 59.071 41.667 0.00 0.00 0.00 4.63
1671 2730 6.533012 AGATCAAACACAGATGACATAACTCG 59.467 38.462 0.00 0.00 0.00 4.18
1686 2745 2.788786 CGCCACACAAAAGATCAAACAC 59.211 45.455 0.00 0.00 0.00 3.32
1691 2750 0.950836 CCACGCCACACAAAAGATCA 59.049 50.000 0.00 0.00 0.00 2.92
1695 2754 0.527385 CCAACCACGCCACACAAAAG 60.527 55.000 0.00 0.00 0.00 2.27
1705 2764 1.104577 TCAGTTTTCCCCAACCACGC 61.105 55.000 0.00 0.00 0.00 5.34
1706 2765 1.394618 TTCAGTTTTCCCCAACCACG 58.605 50.000 0.00 0.00 0.00 4.94
1707 2766 3.527533 GTTTTCAGTTTTCCCCAACCAC 58.472 45.455 0.00 0.00 0.00 4.16
1761 2824 7.739498 TTCAGTAACTTATTCTGACCCAAAC 57.261 36.000 0.00 0.00 37.84 2.93
1780 2843 6.773638 AGGAACATAAGTGTCTGAATTCAGT 58.226 36.000 29.80 16.05 44.12 3.41
1890 2961 1.271543 TGGACCCATTTCAGCAGTCAG 60.272 52.381 0.00 0.00 0.00 3.51
1920 2991 5.071788 AGAGGACCAATTCAACAGTCAAGTA 59.928 40.000 0.00 0.00 0.00 2.24
1943 3016 4.494199 CGCGGCAGAAAAAGGAAGTTATAG 60.494 45.833 0.00 0.00 0.00 1.31
1944 3017 3.372822 CGCGGCAGAAAAAGGAAGTTATA 59.627 43.478 0.00 0.00 0.00 0.98
1953 3027 0.165944 AATCGACGCGGCAGAAAAAG 59.834 50.000 14.85 0.00 0.00 2.27
1964 3038 0.728129 TCGGCATATCGAATCGACGC 60.728 55.000 7.77 11.11 39.18 5.19
2006 3081 1.949525 CACCACAACTCCACAAGGAAG 59.050 52.381 0.00 0.00 45.19 3.46
2017 3092 2.627699 CCACCTAATTTGCACCACAACT 59.372 45.455 0.00 0.00 38.23 3.16
2019 3094 1.342819 GCCACCTAATTTGCACCACAA 59.657 47.619 0.00 0.00 36.13 3.33
2020 3095 0.965439 GCCACCTAATTTGCACCACA 59.035 50.000 0.00 0.00 0.00 4.17
2021 3096 0.246360 GGCCACCTAATTTGCACCAC 59.754 55.000 0.00 0.00 0.00 4.16
2022 3097 0.114168 AGGCCACCTAATTTGCACCA 59.886 50.000 5.01 0.00 28.47 4.17
2023 3098 2.137810 TAGGCCACCTAATTTGCACC 57.862 50.000 5.01 0.00 32.55 5.01
2024 3099 4.736126 ATTTAGGCCACCTAATTTGCAC 57.264 40.909 5.01 0.00 44.38 4.57
2025 3100 6.191315 TCTAATTTAGGCCACCTAATTTGCA 58.809 36.000 17.60 0.00 44.38 4.08
2026 3101 6.709018 TCTAATTTAGGCCACCTAATTTGC 57.291 37.500 17.60 0.00 44.38 3.68
2031 3106 7.639378 AGTTCATTCTAATTTAGGCCACCTAA 58.361 34.615 5.01 1.90 43.47 2.69
2039 3114 6.599244 TGTGCCAGAGTTCATTCTAATTTAGG 59.401 38.462 3.66 0.00 0.00 2.69
2078 3153 4.802563 GGAATGTAGTCAGTAGCGTTTACC 59.197 45.833 0.00 0.00 0.00 2.85
2127 3212 3.445096 ACAAGAAGAGCAGCAACAAAAGT 59.555 39.130 0.00 0.00 0.00 2.66
2139 3224 0.450983 GCTGGCATGACAAGAAGAGC 59.549 55.000 1.11 0.00 0.00 4.09
2140 3225 2.110901 AGCTGGCATGACAAGAAGAG 57.889 50.000 1.11 0.00 0.00 2.85
2144 3229 1.625315 ACTGTAGCTGGCATGACAAGA 59.375 47.619 1.11 0.00 0.00 3.02
2145 3230 2.005451 GACTGTAGCTGGCATGACAAG 58.995 52.381 1.11 0.00 0.00 3.16
2153 3238 2.990066 ATAACAGGACTGTAGCTGGC 57.010 50.000 5.25 0.00 44.13 4.85
2173 3258 4.371624 TCAGATGTCCAGGTGAAAACAT 57.628 40.909 0.00 0.00 35.15 2.71
2174 3259 3.855255 TCAGATGTCCAGGTGAAAACA 57.145 42.857 0.00 0.00 0.00 2.83
2324 3412 0.973632 TGGAAGAAGGAGCGTTGCTA 59.026 50.000 0.00 0.00 39.88 3.49
2372 3460 2.695314 GGTAGCTGCCCAATCTTCG 58.305 57.895 10.19 0.00 0.00 3.79
2425 3513 3.463533 TGTTGCGGTAAATTGTCGATG 57.536 42.857 0.00 0.00 0.00 3.84
2444 3532 7.796838 TCGATCAAACAGTAGAAATGAAGTTG 58.203 34.615 0.00 0.00 0.00 3.16
2473 3561 5.681639 AGGGAAAATGCACTATGTACCTAC 58.318 41.667 0.00 0.00 0.00 3.18
2474 3562 5.968676 AGGGAAAATGCACTATGTACCTA 57.031 39.130 0.00 0.00 0.00 3.08
2475 3563 4.862641 AGGGAAAATGCACTATGTACCT 57.137 40.909 0.00 0.00 0.00 3.08
2476 3564 6.120220 ACTTAGGGAAAATGCACTATGTACC 58.880 40.000 0.00 0.00 0.00 3.34
2478 3566 9.555727 GATTACTTAGGGAAAATGCACTATGTA 57.444 33.333 0.00 0.00 0.00 2.29
2484 3574 7.067494 AGTGATGATTACTTAGGGAAAATGCAC 59.933 37.037 0.00 0.00 0.00 4.57
2499 3589 6.135290 TGCCTGCATTAAAGTGATGATTAC 57.865 37.500 0.00 0.00 0.00 1.89
2512 3602 1.210478 GAGTCCTCCTTGCCTGCATTA 59.790 52.381 0.00 0.00 0.00 1.90
2562 3652 1.114119 TTGCTCTGCCCAACAATGCA 61.114 50.000 0.00 0.00 35.57 3.96
2573 3663 2.113860 TGGTAACTGGATTGCTCTGC 57.886 50.000 0.00 0.00 37.61 4.26
2600 3690 3.912496 ATGTAGCTCAATGTGGCACTA 57.088 42.857 19.83 5.69 0.00 2.74
2678 3768 1.640917 TCTTCCTGTTACGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
2687 3777 5.808366 TCTCTTGCTTCTTCTTCCTGTTA 57.192 39.130 0.00 0.00 0.00 2.41
2800 3890 5.184096 TCTTGTCTCTAGTGAAGTTAGGCAG 59.816 44.000 0.00 0.00 0.00 4.85
2803 3893 6.827586 ACTCTTGTCTCTAGTGAAGTTAGG 57.172 41.667 0.00 0.00 0.00 2.69
2811 3901 6.657541 AGGAACTCTTACTCTTGTCTCTAGTG 59.342 42.308 0.00 0.00 0.00 2.74
2855 3945 4.165779 CAACCTGATAAAAACATGCCGAC 58.834 43.478 0.00 0.00 0.00 4.79
2879 3969 0.911769 TGTTCGAGCCTCCATTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
2897 3987 3.700539 TGGCAACTATTTCATCCATGGTG 59.299 43.478 12.58 9.69 37.61 4.17
2993 4083 4.541779 CGATGTGAGATTAGTAGCCAGTC 58.458 47.826 0.00 0.00 0.00 3.51
3006 4097 3.740631 ATAATGAGCTGCGATGTGAGA 57.259 42.857 0.00 0.00 0.00 3.27
3018 4109 6.671402 GCATGAACTGTTGCAAAATAATGAGC 60.671 38.462 0.00 0.00 38.72 4.26
3050 4179 5.004922 ACAGATAGAGAAGCTGCTACAAC 57.995 43.478 0.90 0.00 33.03 3.32
3056 4185 5.703978 TGAGATACAGATAGAGAAGCTGC 57.296 43.478 0.00 0.00 33.03 5.25
3079 4208 7.931407 AGAGTGCGACATATGGTTTATAATCAA 59.069 33.333 7.80 0.00 0.00 2.57
3103 4233 2.825532 GCCCTCCACTGCAAAATTAAGA 59.174 45.455 0.00 0.00 0.00 2.10
3105 4235 2.603021 TGCCCTCCACTGCAAAATTAA 58.397 42.857 0.00 0.00 33.87 1.40
3106 4236 2.300956 TGCCCTCCACTGCAAAATTA 57.699 45.000 0.00 0.00 33.87 1.40
3107 4237 1.422531 TTGCCCTCCACTGCAAAATT 58.577 45.000 0.00 0.00 43.94 1.82
3108 4238 3.146218 TTGCCCTCCACTGCAAAAT 57.854 47.368 0.00 0.00 43.94 1.82
3400 4530 0.586319 TTTCTGCTCCGTTTTCGCTG 59.414 50.000 0.00 0.00 42.58 5.18
3428 4558 4.758688 CCTTTGGTTTCTGCTCTGTTTTT 58.241 39.130 0.00 0.00 0.00 1.94
3527 4664 0.109597 GCGGGTTTCAAGCAGTGATG 60.110 55.000 0.00 0.00 35.70 3.07
3644 4782 2.174639 ACATTGGTCACTTCTTGGTCCA 59.825 45.455 0.00 0.00 0.00 4.02
3648 4786 5.707298 ACATTCTACATTGGTCACTTCTTGG 59.293 40.000 0.00 0.00 0.00 3.61
3725 4863 1.335506 GCGCACAGTAGAGATCCTAGC 60.336 57.143 0.30 0.00 0.00 3.42
4031 5799 2.542411 GCTCTGGAAACTGTGCAAACTG 60.542 50.000 0.00 0.00 44.87 3.16
4205 5973 3.365364 GCCAACTGCATCTACTTTGTGAC 60.365 47.826 0.00 0.00 40.77 3.67
4240 6008 2.810887 GTGCGCGCATCAGAGACA 60.811 61.111 38.62 7.63 0.00 3.41
4260 6028 1.280982 GAGCGAGCAATCATCGTTCA 58.719 50.000 7.22 0.00 45.92 3.18
4380 6148 2.617274 GCAGCACAAGAACCCGGAC 61.617 63.158 0.73 0.00 0.00 4.79
4395 6163 4.056125 TCGGTCTGGTGCTCGCAG 62.056 66.667 0.00 0.00 0.00 5.18
4458 6232 4.840005 GGTACAGCTGCCTCCGCC 62.840 72.222 15.27 3.37 0.00 6.13
4466 6240 1.443407 CGATCCCTGGGTACAGCTG 59.557 63.158 13.48 13.48 43.53 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.