Multiple sequence alignment - TraesCS7D01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G107300 chr7D 100.000 3533 0 0 1 3533 64665865 64669397 0.000000e+00 6525.0
1 TraesCS7D01G107300 chr3B 92.431 1123 63 10 1433 2543 27053651 27054763 0.000000e+00 1583.0
2 TraesCS7D01G107300 chr3B 87.723 1401 109 42 1433 2795 14250955 14252330 0.000000e+00 1576.0
3 TraesCS7D01G107300 chr3B 86.585 1476 121 28 1 1437 27204017 27202580 0.000000e+00 1557.0
4 TraesCS7D01G107300 chr3B 91.362 1123 59 14 1436 2543 27202701 27201602 0.000000e+00 1502.0
5 TraesCS7D01G107300 chr3B 89.727 769 34 15 685 1434 27053030 27053772 0.000000e+00 941.0
6 TraesCS7D01G107300 chr3B 89.109 707 27 14 2839 3518 27086034 27086717 0.000000e+00 833.0
7 TraesCS7D01G107300 chr3B 84.288 751 101 6 1802 2552 27103732 27104465 0.000000e+00 717.0
8 TraesCS7D01G107300 chr3B 79.047 1007 159 32 1542 2511 50039355 50038364 0.000000e+00 643.0
9 TraesCS7D01G107300 chr3B 90.737 475 30 4 974 1434 14250602 14251076 3.870000e-174 621.0
10 TraesCS7D01G107300 chr3B 80.800 625 86 21 1906 2511 49863317 49863926 3.210000e-125 459.0
11 TraesCS7D01G107300 chr3B 79.961 519 62 19 196 687 27051553 27052056 9.390000e-91 344.0
12 TraesCS7D01G107300 chr3B 77.182 653 86 44 329 947 14247581 14248204 4.400000e-84 322.0
13 TraesCS7D01G107300 chr3B 79.353 402 31 24 2571 2948 27105792 27106165 5.900000e-58 235.0
14 TraesCS7D01G107300 chr3B 80.000 260 22 21 2904 3148 14252520 14252764 7.850000e-37 165.0
15 TraesCS7D01G107300 chr3B 76.308 325 39 25 2904 3212 27199483 27199181 4.760000e-29 139.0
16 TraesCS7D01G107300 chr3B 89.320 103 8 2 3077 3179 27107291 27107390 3.700000e-25 126.0
17 TraesCS7D01G107300 chr3B 80.000 170 23 8 2631 2795 27054786 27054949 8.010000e-22 115.0
18 TraesCS7D01G107300 chr3B 95.455 44 2 0 2742 2785 27201498 27201455 1.760000e-08 71.3
19 TraesCS7D01G107300 chr3B 96.970 33 1 0 2999 3031 27106171 27106203 4.930000e-04 56.5
20 TraesCS7D01G107300 chr3A 78.004 982 150 42 1545 2484 38658478 38657521 1.110000e-154 556.0
21 TraesCS7D01G107300 chr4D 80.161 746 109 25 1785 2509 81393570 81394297 4.040000e-144 521.0
22 TraesCS7D01G107300 chr4A 79.786 747 110 24 1785 2509 490920052 490920779 4.070000e-139 505.0
23 TraesCS7D01G107300 chr6B 90.732 205 19 0 3329 3533 469853941 469854145 1.250000e-69 274.0
24 TraesCS7D01G107300 chr6B 85.965 228 17 5 3292 3517 545319809 545320023 2.740000e-56 230.0
25 TraesCS7D01G107300 chr3D 87.815 238 16 5 3283 3518 603526509 603526735 2.090000e-67 267.0
26 TraesCS7D01G107300 chr3D 87.719 228 21 6 3292 3518 505453845 505454066 3.500000e-65 259.0
27 TraesCS7D01G107300 chr6A 88.158 228 17 4 3292 3518 517900598 517900816 2.700000e-66 263.0
28 TraesCS7D01G107300 chr5B 87.395 238 18 6 3283 3518 511018345 511018572 2.700000e-66 263.0
29 TraesCS7D01G107300 chr2A 89.394 198 13 4 3330 3527 306677397 306677208 3.520000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G107300 chr7D 64665865 64669397 3532 False 6525.000 6525 100.00000 1 3533 1 chr7D.!!$F1 3532
1 TraesCS7D01G107300 chr3B 27086034 27086717 683 False 833.000 833 89.10900 2839 3518 1 chr3B.!!$F1 679
2 TraesCS7D01G107300 chr3B 27199181 27204017 4836 True 817.325 1557 87.42750 1 3212 4 chr3B.!!$R2 3211
3 TraesCS7D01G107300 chr3B 27051553 27054949 3396 False 745.750 1583 85.52975 196 2795 4 chr3B.!!$F4 2599
4 TraesCS7D01G107300 chr3B 14247581 14252764 5183 False 671.000 1576 83.91050 329 3148 4 chr3B.!!$F3 2819
5 TraesCS7D01G107300 chr3B 50038364 50039355 991 True 643.000 643 79.04700 1542 2511 1 chr3B.!!$R1 969
6 TraesCS7D01G107300 chr3B 49863317 49863926 609 False 459.000 459 80.80000 1906 2511 1 chr3B.!!$F2 605
7 TraesCS7D01G107300 chr3B 27103732 27107390 3658 False 283.625 717 87.48275 1802 3179 4 chr3B.!!$F5 1377
8 TraesCS7D01G107300 chr3A 38657521 38658478 957 True 556.000 556 78.00400 1545 2484 1 chr3A.!!$R1 939
9 TraesCS7D01G107300 chr4D 81393570 81394297 727 False 521.000 521 80.16100 1785 2509 1 chr4D.!!$F1 724
10 TraesCS7D01G107300 chr4A 490920052 490920779 727 False 505.000 505 79.78600 1785 2509 1 chr4A.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.321564 TGACCAAACCATCCAGAGCG 60.322 55.0 0.0 0.0 0.0 5.03 F
1300 4790 0.819666 GCTCAATCCCGTTCCCATCC 60.820 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 4927 2.032681 GGACTGGTCACTGCCACC 59.967 66.667 3.1 0.0 34.36 4.61 R
2732 7678 0.523072 CAAGTGCCAAATCCACTCCG 59.477 55.000 0.0 0.0 42.37 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 9.136323 AGAAAAATAGATTTGTGAAGTTGGACT 57.864 29.630 0.00 0.00 0.00 3.85
159 160 3.123621 GTGGTGAAACTGTGATCGATGAC 59.876 47.826 8.17 8.17 36.74 3.06
160 161 2.673368 GGTGAAACTGTGATCGATGACC 59.327 50.000 12.62 0.00 36.74 4.02
161 162 3.325870 GTGAAACTGTGATCGATGACCA 58.674 45.455 12.62 0.00 0.00 4.02
171 172 2.401583 TCGATGACCAAACCATCCAG 57.598 50.000 0.00 0.00 37.67 3.86
175 176 0.321564 TGACCAAACCATCCAGAGCG 60.322 55.000 0.00 0.00 0.00 5.03
198 199 4.776435 TCAATGAGCAGATCCAATGGTA 57.224 40.909 0.00 0.00 0.00 3.25
216 217 5.163302 TGGTACAAAGTGTCAAATCGTTG 57.837 39.130 0.00 0.00 31.92 4.10
219 220 4.955925 ACAAAGTGTCAAATCGTTGTGA 57.044 36.364 0.00 0.00 35.66 3.58
240 241 5.014202 TGAGATGTTGTAGGTAGCTGTGTA 58.986 41.667 4.27 0.00 0.00 2.90
241 242 5.125578 TGAGATGTTGTAGGTAGCTGTGTAG 59.874 44.000 4.27 0.00 0.00 2.74
244 245 6.834451 AGATGTTGTAGGTAGCTGTGTAGTAT 59.166 38.462 4.27 0.00 0.00 2.12
245 246 6.845758 TGTTGTAGGTAGCTGTGTAGTATT 57.154 37.500 4.27 0.00 0.00 1.89
246 247 6.627243 TGTTGTAGGTAGCTGTGTAGTATTG 58.373 40.000 4.27 0.00 0.00 1.90
249 250 7.235935 TGTAGGTAGCTGTGTAGTATTGTTT 57.764 36.000 4.27 0.00 0.00 2.83
325 326 2.163818 TTGGAAAATCTGACTCGCGT 57.836 45.000 5.77 0.00 0.00 6.01
345 346 7.304735 TCGCGTTGTATACTAGTCAAGTAAAA 58.695 34.615 5.77 0.00 43.87 1.52
451 466 5.393896 CCTCTTTGGCTTTCCTCATTTCATC 60.394 44.000 0.00 0.00 0.00 2.92
452 467 5.078949 TCTTTGGCTTTCCTCATTTCATCA 58.921 37.500 0.00 0.00 0.00 3.07
463 478 8.578448 TTCCTCATTTCATCAACACATGAATA 57.422 30.769 0.00 0.00 41.42 1.75
467 482 8.564509 TCATTTCATCAACACATGAATACAGA 57.435 30.769 0.00 0.00 41.42 3.41
469 484 7.984422 TTTCATCAACACATGAATACAGAGT 57.016 32.000 0.00 0.00 41.42 3.24
472 526 9.500785 TTCATCAACACATGAATACAGAGTTAA 57.499 29.630 0.00 0.00 42.54 2.01
519 574 3.025978 TCCATGGCCTTGCTAAATTCAG 58.974 45.455 13.15 0.00 0.00 3.02
521 576 3.181483 CCATGGCCTTGCTAAATTCAGTC 60.181 47.826 13.15 0.00 0.00 3.51
545 600 6.036470 CGAAACTGAAGATAGAGTATGTGCA 58.964 40.000 0.00 0.00 0.00 4.57
546 601 6.699204 CGAAACTGAAGATAGAGTATGTGCAT 59.301 38.462 0.00 0.00 0.00 3.96
547 602 7.223582 CGAAACTGAAGATAGAGTATGTGCATT 59.776 37.037 0.00 0.00 0.00 3.56
630 685 8.608844 AAACTTGTGAATTAGACTCAGTAAGG 57.391 34.615 0.00 0.00 0.00 2.69
632 687 7.379750 ACTTGTGAATTAGACTCAGTAAGGTC 58.620 38.462 0.00 0.00 0.00 3.85
634 689 6.925211 TGTGAATTAGACTCAGTAAGGTCAG 58.075 40.000 0.00 0.00 35.18 3.51
640 697 8.834749 ATTAGACTCAGTAAGGTCAGTTTTTC 57.165 34.615 0.00 0.00 35.18 2.29
643 700 7.110155 AGACTCAGTAAGGTCAGTTTTTCAAA 58.890 34.615 0.00 0.00 35.18 2.69
747 1787 3.040147 TCTTGTACCCGCAGAAAGAAG 57.960 47.619 0.00 0.00 0.00 2.85
779 1820 1.072965 AGACAAGCAGGAAGACCCTTG 59.927 52.381 0.00 0.00 44.85 3.61
781 1822 1.707427 ACAAGCAGGAAGACCCTTGAT 59.293 47.619 6.27 0.00 44.85 2.57
891 1946 1.153469 GCAGTAGCAGCTCACTCCC 60.153 63.158 0.00 0.00 41.58 4.30
904 1959 3.161067 CTCACTCCCACTCTCTCAAAGA 58.839 50.000 0.00 0.00 0.00 2.52
983 4438 0.889186 GCTTCTTCGGCACAGGGAAA 60.889 55.000 0.00 0.00 0.00 3.13
986 4441 2.668212 TTCGGCACAGGGAAAGCG 60.668 61.111 0.00 0.00 0.00 4.68
1044 4499 1.270907 GGGAGCAGGACAAGAAGAGA 58.729 55.000 0.00 0.00 0.00 3.10
1051 4506 1.289380 GACAAGAAGAGACCGCGGT 59.711 57.895 34.89 34.89 0.00 5.68
1219 4709 1.979693 GTCACCAGTCCTCTCGCCT 60.980 63.158 0.00 0.00 0.00 5.52
1223 4713 0.832135 ACCAGTCCTCTCGCCTTCAA 60.832 55.000 0.00 0.00 0.00 2.69
1300 4790 0.819666 GCTCAATCCCGTTCCCATCC 60.820 60.000 0.00 0.00 0.00 3.51
1317 4807 4.680237 CCGAAGTCAGCCGCCACA 62.680 66.667 0.00 0.00 0.00 4.17
1431 4921 4.742201 CCGACGCCCAGTCCAGTG 62.742 72.222 0.00 0.00 46.92 3.66
1432 4922 4.742201 CGACGCCCAGTCCAGTGG 62.742 72.222 1.40 1.40 46.92 4.00
1437 4927 4.742201 CCCAGTCCAGTGGCGACG 62.742 72.222 3.51 0.00 36.11 5.12
1438 4928 4.742201 CCAGTCCAGTGGCGACGG 62.742 72.222 3.51 0.00 35.33 4.79
1439 4929 3.991051 CAGTCCAGTGGCGACGGT 61.991 66.667 3.51 0.00 35.33 4.83
1440 4930 3.991051 AGTCCAGTGGCGACGGTG 61.991 66.667 3.51 0.00 35.33 4.94
1450 4940 4.293648 CGACGGTGGCAGTGACCA 62.294 66.667 0.00 0.00 37.38 4.02
1451 4941 2.357517 GACGGTGGCAGTGACCAG 60.358 66.667 6.54 0.29 41.46 4.00
1452 4942 3.161450 ACGGTGGCAGTGACCAGT 61.161 61.111 6.54 0.83 41.46 4.00
1453 4943 2.357517 CGGTGGCAGTGACCAGTC 60.358 66.667 6.54 0.00 41.46 3.51
1454 4944 2.032681 GGTGGCAGTGACCAGTCC 59.967 66.667 6.54 2.88 41.46 3.85
1455 4945 2.357517 GTGGCAGTGACCAGTCCG 60.358 66.667 6.54 0.00 41.46 4.79
1456 4946 3.625897 TGGCAGTGACCAGTCCGG 61.626 66.667 0.00 0.00 42.50 5.14
1466 4956 4.082523 CAGTCCGGTGACCGCCAT 62.083 66.667 20.39 2.53 46.86 4.40
1467 4957 4.082523 AGTCCGGTGACCGCCATG 62.083 66.667 20.39 4.92 46.86 3.66
1472 4962 3.211963 GGTGACCGCCATGCCATC 61.212 66.667 0.00 0.00 0.00 3.51
1473 4963 3.576356 GTGACCGCCATGCCATCG 61.576 66.667 0.00 0.00 0.00 3.84
1621 5111 2.095847 CACAATGGTGGCGCAATGC 61.096 57.895 10.83 0.00 41.45 3.56
1689 5179 2.036556 AGAAATTGTTTCACTGCGCG 57.963 45.000 0.00 0.00 42.10 6.86
1740 5233 3.166679 GTTCAAGGTACTCACTCCTCCT 58.833 50.000 0.00 0.00 38.49 3.69
1745 5238 5.104444 TCAAGGTACTCACTCCTCCTACTAG 60.104 48.000 0.00 0.00 38.49 2.57
1836 5352 2.557805 CATTTCGTGTGCTGCGCT 59.442 55.556 14.92 0.00 0.00 5.92
2091 5640 4.069232 CCAGCGGAACTCCTGCGA 62.069 66.667 0.00 0.00 42.35 5.10
2151 5700 4.158025 ACGGACAAGATCAAATACGAGTCT 59.842 41.667 0.00 0.00 0.00 3.24
2203 5755 2.825836 ATTACCGCTGCCTGCTGC 60.826 61.111 10.55 10.55 40.11 5.25
2359 5932 4.731853 TGGATGGTCCTCCGGCCA 62.732 66.667 2.24 0.00 38.21 5.36
2522 6102 0.597637 CTGCGCCTCCGTATAACCAG 60.598 60.000 4.18 0.00 36.67 4.00
2543 7473 5.047519 CCAGATTCCCATGAATGAATTAGCC 60.048 44.000 0.00 0.00 41.30 3.93
2544 7474 5.537295 CAGATTCCCATGAATGAATTAGCCA 59.463 40.000 0.00 0.00 41.30 4.75
2545 7475 5.773680 AGATTCCCATGAATGAATTAGCCAG 59.226 40.000 0.00 0.00 41.30 4.85
2546 7476 3.836146 TCCCATGAATGAATTAGCCAGG 58.164 45.455 0.00 0.00 0.00 4.45
2547 7477 2.298163 CCCATGAATGAATTAGCCAGGC 59.702 50.000 1.84 1.84 0.00 4.85
2548 7478 3.228453 CCATGAATGAATTAGCCAGGCT 58.772 45.455 20.63 20.63 43.41 4.58
2549 7479 3.640029 CCATGAATGAATTAGCCAGGCTT 59.360 43.478 22.26 0.00 40.44 4.35
2550 7480 4.261909 CCATGAATGAATTAGCCAGGCTTC 60.262 45.833 22.26 12.32 40.44 3.86
2551 7481 4.240881 TGAATGAATTAGCCAGGCTTCT 57.759 40.909 22.26 4.17 40.44 2.85
2552 7482 4.202441 TGAATGAATTAGCCAGGCTTCTC 58.798 43.478 22.26 14.19 40.44 2.87
2553 7483 4.080129 TGAATGAATTAGCCAGGCTTCTCT 60.080 41.667 22.26 1.48 40.44 3.10
2554 7484 3.272574 TGAATTAGCCAGGCTTCTCTG 57.727 47.619 22.26 0.00 40.44 3.35
2555 7485 2.840038 TGAATTAGCCAGGCTTCTCTGA 59.160 45.455 22.26 0.00 40.44 3.27
2556 7486 3.457380 TGAATTAGCCAGGCTTCTCTGAT 59.543 43.478 22.26 1.89 40.44 2.90
2557 7487 4.080129 TGAATTAGCCAGGCTTCTCTGATT 60.080 41.667 22.26 10.43 40.44 2.57
2558 7488 4.516652 ATTAGCCAGGCTTCTCTGATTT 57.483 40.909 22.26 0.00 40.44 2.17
2559 7489 2.125773 AGCCAGGCTTCTCTGATTTG 57.874 50.000 8.70 0.00 33.89 2.32
2560 7490 1.632409 AGCCAGGCTTCTCTGATTTGA 59.368 47.619 8.70 0.00 33.89 2.69
2561 7491 2.241685 AGCCAGGCTTCTCTGATTTGAT 59.758 45.455 8.70 0.00 33.89 2.57
2562 7492 2.617774 GCCAGGCTTCTCTGATTTGATC 59.382 50.000 3.29 0.00 36.93 2.92
2563 7493 3.882444 CCAGGCTTCTCTGATTTGATCA 58.118 45.455 0.00 0.00 36.93 2.92
2564 7494 3.626670 CCAGGCTTCTCTGATTTGATCAC 59.373 47.826 0.00 0.00 36.93 3.06
2565 7495 4.515361 CAGGCTTCTCTGATTTGATCACT 58.485 43.478 0.00 0.00 36.93 3.41
2566 7496 4.571580 CAGGCTTCTCTGATTTGATCACTC 59.428 45.833 0.00 0.00 36.93 3.51
2567 7497 3.876320 GGCTTCTCTGATTTGATCACTCC 59.124 47.826 0.00 0.00 35.06 3.85
2568 7498 4.383989 GGCTTCTCTGATTTGATCACTCCT 60.384 45.833 0.00 0.00 35.06 3.69
2569 7499 5.184711 GCTTCTCTGATTTGATCACTCCTT 58.815 41.667 0.00 0.00 35.06 3.36
2570 7500 5.064962 GCTTCTCTGATTTGATCACTCCTTG 59.935 44.000 0.00 0.00 35.06 3.61
2571 7501 4.511527 TCTCTGATTTGATCACTCCTTGC 58.488 43.478 0.00 0.00 35.06 4.01
2572 7502 4.224594 TCTCTGATTTGATCACTCCTTGCT 59.775 41.667 0.00 0.00 35.06 3.91
2573 7503 4.511527 TCTGATTTGATCACTCCTTGCTC 58.488 43.478 0.00 0.00 35.06 4.26
2574 7504 4.019950 TCTGATTTGATCACTCCTTGCTCA 60.020 41.667 0.00 0.00 35.06 4.26
2575 7505 4.005650 TGATTTGATCACTCCTTGCTCAC 58.994 43.478 0.00 0.00 29.91 3.51
2576 7506 2.479566 TTGATCACTCCTTGCTCACC 57.520 50.000 0.00 0.00 29.91 4.02
2577 7507 1.351076 TGATCACTCCTTGCTCACCA 58.649 50.000 0.00 0.00 0.00 4.17
2578 7508 1.911357 TGATCACTCCTTGCTCACCAT 59.089 47.619 0.00 0.00 0.00 3.55
2579 7509 3.106827 TGATCACTCCTTGCTCACCATA 58.893 45.455 0.00 0.00 0.00 2.74
2580 7510 3.713248 TGATCACTCCTTGCTCACCATAT 59.287 43.478 0.00 0.00 0.00 1.78
2581 7511 4.901250 TGATCACTCCTTGCTCACCATATA 59.099 41.667 0.00 0.00 0.00 0.86
2582 7512 5.545335 TGATCACTCCTTGCTCACCATATAT 59.455 40.000 0.00 0.00 0.00 0.86
2583 7513 6.725834 TGATCACTCCTTGCTCACCATATATA 59.274 38.462 0.00 0.00 0.00 0.86
2584 7514 7.401204 TGATCACTCCTTGCTCACCATATATAT 59.599 37.037 0.00 0.00 0.00 0.86
2585 7515 6.939622 TCACTCCTTGCTCACCATATATATG 58.060 40.000 14.78 14.78 0.00 1.78
2586 7516 5.583854 CACTCCTTGCTCACCATATATATGC 59.416 44.000 16.08 6.19 32.40 3.14
2608 7538 2.496070 TGGGAGTTTGATCTCACCGTAG 59.504 50.000 0.00 0.00 37.08 3.51
2662 7596 2.112815 GCTGTACATGAACCCCGGC 61.113 63.158 0.00 0.00 0.00 6.13
2665 7599 0.393673 TGTACATGAACCCCGGCATG 60.394 55.000 15.68 15.68 45.56 4.06
2668 7602 2.124151 ATGAACCCCGGCATGAGC 60.124 61.111 0.00 0.00 41.10 4.26
2670 7604 1.344953 ATGAACCCCGGCATGAGCTA 61.345 55.000 0.00 0.00 41.70 3.32
2671 7605 1.223487 GAACCCCGGCATGAGCTAA 59.777 57.895 0.00 0.00 41.70 3.09
2675 7609 0.396435 CCCCGGCATGAGCTAATGTA 59.604 55.000 12.86 0.00 41.70 2.29
2676 7610 1.003580 CCCCGGCATGAGCTAATGTAT 59.996 52.381 12.86 0.00 41.70 2.29
2677 7611 2.079158 CCCGGCATGAGCTAATGTATG 58.921 52.381 12.86 3.05 41.70 2.39
2703 7639 7.892609 GGAAAAACCCAGTATGAACTTGTTAT 58.107 34.615 0.00 0.00 39.69 1.89
2709 7645 7.686434 ACCCAGTATGAACTTGTTATTAGTGT 58.314 34.615 0.00 0.00 39.69 3.55
2710 7646 8.161425 ACCCAGTATGAACTTGTTATTAGTGTT 58.839 33.333 0.00 0.00 39.69 3.32
2711 7647 8.450964 CCCAGTATGAACTTGTTATTAGTGTTG 58.549 37.037 0.00 0.00 39.69 3.33
2712 7648 8.450964 CCAGTATGAACTTGTTATTAGTGTTGG 58.549 37.037 0.00 0.00 39.69 3.77
2713 7649 9.214957 CAGTATGAACTTGTTATTAGTGTTGGA 57.785 33.333 0.00 0.00 39.69 3.53
2714 7650 9.436957 AGTATGAACTTGTTATTAGTGTTGGAG 57.563 33.333 0.00 0.00 29.00 3.86
2718 7664 4.451096 ACTTGTTATTAGTGTTGGAGTGCG 59.549 41.667 0.00 0.00 0.00 5.34
2734 7680 4.688419 CGCAGCAGTGTTTGGCGG 62.688 66.667 4.12 0.00 43.63 6.13
2740 7686 1.227823 CAGTGTTTGGCGGAGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
2755 7701 1.039856 GTGGATTTGGCACTTGTGGT 58.960 50.000 2.81 0.00 0.00 4.16
2883 9719 8.627208 ATGTGACAAGAATCATGTAAAGAGTT 57.373 30.769 0.00 0.00 0.00 3.01
2894 9730 1.664151 GTAAAGAGTTTGATCCCCGCG 59.336 52.381 0.00 0.00 0.00 6.46
2977 9814 6.423604 CACAAACACCCAAAATGGAAATACTC 59.576 38.462 0.00 0.00 40.96 2.59
2988 9825 4.222124 TGGAAATACTCCCTCAAGAAGC 57.778 45.455 0.00 0.00 44.69 3.86
2997 9834 2.239654 TCCCTCAAGAAGCCCTGTAATG 59.760 50.000 0.00 0.00 0.00 1.90
3155 11036 5.769484 TTTATACCGTTTGACTTTGGCAA 57.231 34.783 0.00 0.00 0.00 4.52
3201 11082 2.449345 AGAGAGGAAGGGGGTAGAGATC 59.551 54.545 0.00 0.00 0.00 2.75
3205 11086 2.045885 AGGAAGGGGGTAGAGATCAACA 59.954 50.000 0.00 0.00 0.00 3.33
3208 11089 4.040584 GGAAGGGGGTAGAGATCAACATAC 59.959 50.000 0.00 0.00 0.00 2.39
3209 11090 4.561254 AGGGGGTAGAGATCAACATACT 57.439 45.455 0.00 0.00 0.00 2.12
3210 11091 5.681494 AGGGGGTAGAGATCAACATACTA 57.319 43.478 0.00 0.00 0.00 1.82
3211 11092 5.395611 AGGGGGTAGAGATCAACATACTAC 58.604 45.833 0.00 0.00 34.55 2.73
3212 11093 4.527427 GGGGGTAGAGATCAACATACTACC 59.473 50.000 0.00 0.00 46.91 3.18
3255 11136 3.576648 GTCGGGCATGCTAATAGTACTC 58.423 50.000 18.92 0.00 0.00 2.59
3300 11181 3.181487 ACCCGTGAATGCAAATCATTAGC 60.181 43.478 8.58 0.00 44.95 3.09
3301 11182 3.181488 CCCGTGAATGCAAATCATTAGCA 60.181 43.478 8.58 0.00 44.95 3.49
3303 11184 4.039703 CGTGAATGCAAATCATTAGCAGG 58.960 43.478 8.58 0.00 44.95 4.85
3304 11185 3.800506 GTGAATGCAAATCATTAGCAGGC 59.199 43.478 8.58 0.00 44.95 4.85
3389 11274 3.131577 ACCCTTACATGCATGCATCAAAG 59.868 43.478 30.07 29.30 33.90 2.77
3452 11337 3.003478 GCATGTAGCGTGCGTACC 58.997 61.111 0.00 0.00 36.64 3.34
3455 11340 1.518572 ATGTAGCGTGCGTACCAGC 60.519 57.895 0.00 0.00 37.71 4.85
3456 11341 1.945354 ATGTAGCGTGCGTACCAGCT 61.945 55.000 10.47 10.47 43.07 4.24
3484 11369 5.010617 GGTTAGCTCCATTTTCTTCAACCAA 59.989 40.000 0.00 0.00 34.42 3.67
3486 11371 5.205759 AGCTCCATTTTCTTCAACCAAAG 57.794 39.130 0.00 0.00 0.00 2.77
3507 11392 0.388294 CCGGCTAGCCCTTGTACTAC 59.612 60.000 28.09 0.00 0.00 2.73
3510 11395 1.138464 GGCTAGCCCTTGTACTACACC 59.862 57.143 24.19 0.00 0.00 4.16
3518 11403 3.378427 CCCTTGTACTACACCGTACTACC 59.622 52.174 0.00 0.00 40.25 3.18
3519 11404 4.009675 CCTTGTACTACACCGTACTACCA 58.990 47.826 0.00 0.00 40.25 3.25
3520 11405 4.641989 CCTTGTACTACACCGTACTACCAT 59.358 45.833 0.00 0.00 40.25 3.55
3521 11406 5.822519 CCTTGTACTACACCGTACTACCATA 59.177 44.000 0.00 0.00 40.25 2.74
3522 11407 6.488006 CCTTGTACTACACCGTACTACCATAT 59.512 42.308 0.00 0.00 40.25 1.78
3523 11408 7.661437 CCTTGTACTACACCGTACTACCATATA 59.339 40.741 0.00 0.00 40.25 0.86
3524 11409 8.972458 TTGTACTACACCGTACTACCATATAA 57.028 34.615 0.00 0.00 40.25 0.98
3525 11410 8.607441 TGTACTACACCGTACTACCATATAAG 57.393 38.462 0.00 0.00 40.25 1.73
3526 11411 8.428852 TGTACTACACCGTACTACCATATAAGA 58.571 37.037 0.00 0.00 40.25 2.10
3527 11412 9.273016 GTACTACACCGTACTACCATATAAGAA 57.727 37.037 0.00 0.00 37.39 2.52
3528 11413 8.752005 ACTACACCGTACTACCATATAAGAAA 57.248 34.615 0.00 0.00 0.00 2.52
3529 11414 8.844244 ACTACACCGTACTACCATATAAGAAAG 58.156 37.037 0.00 0.00 0.00 2.62
3530 11415 7.651027 ACACCGTACTACCATATAAGAAAGT 57.349 36.000 0.00 0.00 0.00 2.66
3531 11416 8.752005 ACACCGTACTACCATATAAGAAAGTA 57.248 34.615 0.00 0.00 0.00 2.24
3532 11417 8.844244 ACACCGTACTACCATATAAGAAAGTAG 58.156 37.037 0.00 0.00 37.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.528018 AAATCTATTTTTCTTTTGCGAGAACAA 57.472 25.926 0.00 0.00 35.50 2.83
62 63 8.463930 TCAGTCCAACTTCACAAATCTATTTT 57.536 30.769 0.00 0.00 0.00 1.82
100 101 7.582667 ACTTTGAACCAGTGTAAGCTATTTT 57.417 32.000 0.00 0.00 0.00 1.82
159 160 0.804989 GAACGCTCTGGATGGTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
160 161 1.522668 TGAACGCTCTGGATGGTTTG 58.477 50.000 0.00 0.00 0.00 2.93
161 162 2.270352 TTGAACGCTCTGGATGGTTT 57.730 45.000 0.00 0.00 0.00 3.27
171 172 1.596727 GGATCTGCTCATTGAACGCTC 59.403 52.381 0.00 0.00 0.00 5.03
175 176 3.698040 ACCATTGGATCTGCTCATTGAAC 59.302 43.478 10.37 0.00 0.00 3.18
198 199 4.634004 TCTCACAACGATTTGACACTTTGT 59.366 37.500 0.00 0.00 36.48 2.83
215 216 3.832490 ACAGCTACCTACAACATCTCACA 59.168 43.478 0.00 0.00 0.00 3.58
216 217 4.177026 CACAGCTACCTACAACATCTCAC 58.823 47.826 0.00 0.00 0.00 3.51
219 220 5.017490 ACTACACAGCTACCTACAACATCT 58.983 41.667 0.00 0.00 0.00 2.90
292 293 9.695526 TCAGATTTTCCAAAGTTTGATTACATG 57.304 29.630 17.33 7.50 0.00 3.21
293 294 9.696917 GTCAGATTTTCCAAAGTTTGATTACAT 57.303 29.630 17.33 2.56 0.00 2.29
409 422 7.256154 CCAAAGAGGCCCTAAGAAAATTTGTTA 60.256 37.037 0.00 0.00 0.00 2.41
411 424 5.012046 CCAAAGAGGCCCTAAGAAAATTTGT 59.988 40.000 0.00 0.00 0.00 2.83
439 454 7.611079 TGTATTCATGTGTTGATGAAATGAGGA 59.389 33.333 0.00 0.00 43.77 3.71
480 534 2.087646 GGAACTCAACTCCTGCATTCC 58.912 52.381 0.00 0.00 33.90 3.01
486 540 1.457346 GCCATGGAACTCAACTCCTG 58.543 55.000 18.40 0.00 33.77 3.86
519 574 6.197468 GCACATACTCTATCTTCAGTTTCGAC 59.803 42.308 0.00 0.00 0.00 4.20
521 576 6.036470 TGCACATACTCTATCTTCAGTTTCG 58.964 40.000 0.00 0.00 0.00 3.46
608 663 7.378966 TGACCTTACTGAGTCTAATTCACAAG 58.621 38.462 0.00 0.00 34.02 3.16
618 673 6.235231 TGAAAAACTGACCTTACTGAGTCT 57.765 37.500 0.00 0.00 34.02 3.24
630 685 7.294676 ACAATCAAGCTTTTGAAAAACTGAC 57.705 32.000 16.01 0.00 34.24 3.51
632 687 8.183830 TGTACAATCAAGCTTTTGAAAAACTG 57.816 30.769 16.01 0.00 34.24 3.16
634 689 9.986833 ATTTGTACAATCAAGCTTTTGAAAAAC 57.013 25.926 16.01 9.40 34.24 2.43
640 697 8.602328 TGTTTGATTTGTACAATCAAGCTTTTG 58.398 29.630 27.10 8.95 44.49 2.44
643 700 8.603181 GTTTGTTTGATTTGTACAATCAAGCTT 58.397 29.630 27.10 0.00 44.49 3.74
747 1787 1.956477 TGCTTGTCTGAAAAAGAGGGC 59.044 47.619 5.74 0.00 34.84 5.19
779 1820 6.256757 GGTCTTGTCTTATCAACTGCTACATC 59.743 42.308 0.00 0.00 0.00 3.06
781 1822 5.246203 AGGTCTTGTCTTATCAACTGCTACA 59.754 40.000 0.00 0.00 0.00 2.74
891 1946 2.096019 GCGCCTTTTCTTTGAGAGAGTG 60.096 50.000 0.00 0.00 35.37 3.51
904 1959 0.324645 AGATGGGGATTGCGCCTTTT 60.325 50.000 4.18 0.00 46.68 2.27
948 2003 4.133526 AGAAGCTACCTATGGCTATGGA 57.866 45.455 0.00 0.00 42.84 3.41
1051 4506 2.052690 CCTCGGCCTTCTCGGAGAA 61.053 63.158 18.74 18.74 36.03 2.87
1195 4665 3.302347 GAGGACTGGTGACCGGCTG 62.302 68.421 11.09 0.00 32.02 4.85
1300 4790 4.680237 TGTGGCGGCTGACTTCGG 62.680 66.667 11.43 0.00 0.00 4.30
1317 4807 3.626924 GGACTGGTCACCGCCACT 61.627 66.667 3.10 0.00 34.36 4.00
1414 4904 4.742201 CACTGGACTGGGCGTCGG 62.742 72.222 0.00 0.00 43.79 4.79
1415 4905 4.742201 CCACTGGACTGGGCGTCG 62.742 72.222 0.00 0.00 43.79 5.12
1420 4910 4.742201 CGTCGCCACTGGACTGGG 62.742 72.222 0.00 0.00 32.24 4.45
1421 4911 4.742201 CCGTCGCCACTGGACTGG 62.742 72.222 0.00 0.00 32.24 4.00
1422 4912 3.991051 ACCGTCGCCACTGGACTG 61.991 66.667 0.00 0.00 32.24 3.51
1423 4913 3.991051 CACCGTCGCCACTGGACT 61.991 66.667 0.00 0.00 32.24 3.85
1433 4923 4.293648 TGGTCACTGCCACCGTCG 62.294 66.667 0.00 0.00 36.61 5.12
1434 4924 2.357517 CTGGTCACTGCCACCGTC 60.358 66.667 0.00 0.00 36.61 4.79
1435 4925 3.161450 ACTGGTCACTGCCACCGT 61.161 61.111 0.00 0.00 36.61 4.83
1436 4926 2.357517 GACTGGTCACTGCCACCG 60.358 66.667 0.00 0.00 36.61 4.94
1437 4927 2.032681 GGACTGGTCACTGCCACC 59.967 66.667 3.10 0.00 34.36 4.61
1438 4928 2.357517 CGGACTGGTCACTGCCAC 60.358 66.667 3.10 0.00 34.36 5.01
1439 4929 3.625897 CCGGACTGGTCACTGCCA 61.626 66.667 0.00 0.00 36.97 4.92
1455 4945 3.211963 GATGGCATGGCGGTCACC 61.212 66.667 15.27 0.00 0.00 4.02
1456 4946 3.576356 CGATGGCATGGCGGTCAC 61.576 66.667 15.27 3.19 0.00 3.67
1457 4947 4.854924 CCGATGGCATGGCGGTCA 62.855 66.667 16.98 0.00 40.17 4.02
1478 4968 4.680237 TCGTTGCCGCTGGACTGG 62.680 66.667 0.00 0.00 0.00 4.00
1479 4969 3.114616 CTCGTTGCCGCTGGACTG 61.115 66.667 0.00 0.00 0.00 3.51
1480 4970 4.379243 CCTCGTTGCCGCTGGACT 62.379 66.667 0.00 0.00 31.89 3.85
1500 4990 2.183046 GGACTCTGTGCCTCGAGC 59.817 66.667 6.99 3.23 44.14 5.03
1501 4991 2.487428 CGGACTCTGTGCCTCGAG 59.513 66.667 5.13 5.13 0.00 4.04
1502 4992 3.062466 CCGGACTCTGTGCCTCGA 61.062 66.667 0.00 0.00 0.00 4.04
1503 4993 3.374402 ACCGGACTCTGTGCCTCG 61.374 66.667 9.46 0.00 0.00 4.63
1504 4994 2.262915 CACCGGACTCTGTGCCTC 59.737 66.667 9.46 0.00 0.00 4.70
1505 4995 3.314331 CCACCGGACTCTGTGCCT 61.314 66.667 9.46 0.00 0.00 4.75
1740 5233 7.718314 TCAGGAGCTAATTCGAATGTACTAGTA 59.282 37.037 12.25 0.00 0.00 1.82
1745 5238 6.903883 TTTCAGGAGCTAATTCGAATGTAC 57.096 37.500 12.25 3.97 0.00 2.90
1858 5398 2.358003 GCAGTGCCTGTTCGCTCT 60.358 61.111 2.85 0.00 33.43 4.09
2076 5625 3.303135 TGTCGCAGGAGTTCCGCT 61.303 61.111 11.29 0.00 42.08 5.52
2082 5631 2.920645 CGTGAGGTGTCGCAGGAGT 61.921 63.158 0.00 0.00 32.19 3.85
2359 5932 3.861797 CCTAAGATGGCCCGCGGT 61.862 66.667 26.12 4.65 0.00 5.68
2522 6102 5.047519 CCTGGCTAATTCATTCATGGGAATC 60.048 44.000 8.09 0.00 41.78 2.52
2543 7473 4.515361 AGTGATCAAATCAGAGAAGCCTG 58.485 43.478 0.00 0.00 40.53 4.85
2544 7474 4.383989 GGAGTGATCAAATCAGAGAAGCCT 60.384 45.833 0.00 0.00 40.53 4.58
2545 7475 3.876320 GGAGTGATCAAATCAGAGAAGCC 59.124 47.826 0.00 0.00 40.53 4.35
2546 7476 4.768583 AGGAGTGATCAAATCAGAGAAGC 58.231 43.478 0.00 0.00 40.53 3.86
2547 7477 5.064962 GCAAGGAGTGATCAAATCAGAGAAG 59.935 44.000 0.00 0.00 40.53 2.85
2548 7478 4.940046 GCAAGGAGTGATCAAATCAGAGAA 59.060 41.667 0.00 0.00 40.53 2.87
2549 7479 4.224594 AGCAAGGAGTGATCAAATCAGAGA 59.775 41.667 0.00 0.00 40.53 3.10
2550 7480 4.515361 AGCAAGGAGTGATCAAATCAGAG 58.485 43.478 0.00 0.00 40.53 3.35
2551 7481 4.511527 GAGCAAGGAGTGATCAAATCAGA 58.488 43.478 0.00 0.00 42.50 3.27
2552 7482 4.879104 GAGCAAGGAGTGATCAAATCAG 57.121 45.455 0.00 0.00 42.50 2.90
2559 7489 2.706339 ATGGTGAGCAAGGAGTGATC 57.294 50.000 0.00 0.00 43.29 2.92
2560 7490 7.563020 CATATATATGGTGAGCAAGGAGTGAT 58.437 38.462 14.04 0.00 0.00 3.06
2561 7491 6.575056 GCATATATATGGTGAGCAAGGAGTGA 60.575 42.308 21.50 0.00 34.32 3.41
2562 7492 5.583854 GCATATATATGGTGAGCAAGGAGTG 59.416 44.000 21.50 0.00 34.32 3.51
2563 7493 5.486775 AGCATATATATGGTGAGCAAGGAGT 59.513 40.000 23.24 0.00 42.26 3.85
2564 7494 5.987098 AGCATATATATGGTGAGCAAGGAG 58.013 41.667 23.24 0.00 42.26 3.69
2574 7504 6.702449 TCAAACTCCCAGCATATATATGGT 57.298 37.500 19.39 19.39 44.45 3.55
2575 7505 7.571919 AGATCAAACTCCCAGCATATATATGG 58.428 38.462 21.50 9.00 34.32 2.74
2576 7506 8.262933 TGAGATCAAACTCCCAGCATATATATG 58.737 37.037 17.01 17.01 36.22 1.78
2577 7507 8.263640 GTGAGATCAAACTCCCAGCATATATAT 58.736 37.037 0.00 0.00 36.22 0.86
2578 7508 7.310671 GGTGAGATCAAACTCCCAGCATATATA 60.311 40.741 0.00 0.00 36.22 0.86
2579 7509 6.471146 GTGAGATCAAACTCCCAGCATATAT 58.529 40.000 0.00 0.00 36.22 0.86
2580 7510 5.221722 GGTGAGATCAAACTCCCAGCATATA 60.222 44.000 0.00 0.00 36.22 0.86
2581 7511 4.445448 GGTGAGATCAAACTCCCAGCATAT 60.445 45.833 0.00 0.00 36.22 1.78
2582 7512 3.118261 GGTGAGATCAAACTCCCAGCATA 60.118 47.826 0.00 0.00 36.22 3.14
2583 7513 2.356535 GGTGAGATCAAACTCCCAGCAT 60.357 50.000 0.00 0.00 36.22 3.79
2584 7514 1.003580 GGTGAGATCAAACTCCCAGCA 59.996 52.381 0.00 0.00 36.22 4.41
2585 7515 1.743996 GGTGAGATCAAACTCCCAGC 58.256 55.000 0.00 0.00 36.22 4.85
2586 7516 1.276421 ACGGTGAGATCAAACTCCCAG 59.724 52.381 0.00 0.00 36.22 4.45
2608 7538 7.556433 CAAAATGATGTAGTAGCTAGCGTAAC 58.444 38.462 9.55 9.31 0.00 2.50
2623 7557 4.060205 GCCAAAACAGAGCAAAATGATGT 58.940 39.130 0.00 0.00 0.00 3.06
2662 7596 6.507023 GGTTTTTCCCATACATTAGCTCATG 58.493 40.000 6.34 6.34 0.00 3.07
2703 7639 1.227999 GCTGCGCACTCCAACACTAA 61.228 55.000 5.66 0.00 0.00 2.24
2705 7641 2.974698 GCTGCGCACTCCAACACT 60.975 61.111 5.66 0.00 0.00 3.55
2706 7642 3.245948 CTGCTGCGCACTCCAACAC 62.246 63.158 5.66 0.00 33.79 3.32
2709 7645 2.974148 CACTGCTGCGCACTCCAA 60.974 61.111 5.66 0.00 33.79 3.53
2710 7646 3.755526 AACACTGCTGCGCACTCCA 62.756 57.895 5.66 2.90 33.79 3.86
2711 7647 2.546494 AAACACTGCTGCGCACTCC 61.546 57.895 5.66 0.00 33.79 3.85
2712 7648 1.369689 CAAACACTGCTGCGCACTC 60.370 57.895 5.66 1.13 33.79 3.51
2713 7649 2.717485 CAAACACTGCTGCGCACT 59.283 55.556 5.66 0.00 33.79 4.40
2714 7650 2.353839 CCAAACACTGCTGCGCAC 60.354 61.111 5.66 4.25 33.79 5.34
2718 7664 3.259425 CTCCGCCAAACACTGCTGC 62.259 63.158 0.00 0.00 0.00 5.25
2732 7678 0.523072 CAAGTGCCAAATCCACTCCG 59.477 55.000 0.00 0.00 42.37 4.63
2734 7680 1.270550 CCACAAGTGCCAAATCCACTC 59.729 52.381 0.00 0.00 42.37 3.51
2740 7686 1.122227 AGCAACCACAAGTGCCAAAT 58.878 45.000 0.00 0.00 0.00 2.32
2755 7701 1.761449 TCAGAAGCCAACACAAGCAA 58.239 45.000 0.00 0.00 0.00 3.91
2914 9750 6.793492 TCACGTTCATACAAACATGATCAA 57.207 33.333 0.00 0.00 34.95 2.57
2977 9814 2.648059 CATTACAGGGCTTCTTGAGGG 58.352 52.381 0.00 0.00 0.00 4.30
2988 9825 3.084039 ACTTCACACATGCATTACAGGG 58.916 45.455 0.00 0.00 33.23 4.45
2997 9834 3.611113 GCATCATTTGACTTCACACATGC 59.389 43.478 0.00 0.00 30.84 4.06
3060 9913 6.768861 TCAACATCATCAGATACATGCATGAA 59.231 34.615 32.75 10.74 31.88 2.57
3061 9914 6.292923 TCAACATCATCAGATACATGCATGA 58.707 36.000 32.75 16.49 31.88 3.07
3062 9915 6.554334 TCAACATCATCAGATACATGCATG 57.446 37.500 25.09 25.09 31.88 4.06
3063 9916 7.761038 AATCAACATCATCAGATACATGCAT 57.239 32.000 0.00 0.00 31.88 3.96
3064 9917 7.422399 CAAATCAACATCATCAGATACATGCA 58.578 34.615 0.00 0.00 31.88 3.96
3171 11052 3.560239 CCCCCTTCCTCTCTGAAAAGAAC 60.560 52.174 0.00 0.00 0.00 3.01
3205 11086 8.966868 CCCAAACAAATTGATAGTTGGTAGTAT 58.033 33.333 0.00 0.00 41.85 2.12
3208 11089 7.362920 CCTCCCAAACAAATTGATAGTTGGTAG 60.363 40.741 0.00 4.47 41.85 3.18
3209 11090 6.435904 CCTCCCAAACAAATTGATAGTTGGTA 59.564 38.462 0.00 0.00 41.85 3.25
3210 11091 5.245977 CCTCCCAAACAAATTGATAGTTGGT 59.754 40.000 0.00 0.00 41.85 3.67
3211 11092 5.245977 ACCTCCCAAACAAATTGATAGTTGG 59.754 40.000 0.00 7.59 41.85 3.77
3212 11093 6.345096 ACCTCCCAAACAAATTGATAGTTG 57.655 37.500 0.00 0.00 41.85 3.16
3213 11094 5.183140 CGACCTCCCAAACAAATTGATAGTT 59.817 40.000 0.00 0.00 41.85 2.24
3214 11095 4.700213 CGACCTCCCAAACAAATTGATAGT 59.300 41.667 0.00 0.00 41.85 2.12
3215 11096 4.096382 CCGACCTCCCAAACAAATTGATAG 59.904 45.833 0.00 0.00 41.85 2.08
3284 11165 4.317671 AGCCTGCTAATGATTTGCATTC 57.682 40.909 14.15 9.25 43.64 2.67
3444 11329 3.799753 CCATGAGCTGGTACGCAC 58.200 61.111 0.00 0.00 40.49 5.34
3468 11353 3.402110 GGCCTTTGGTTGAAGAAAATGG 58.598 45.455 0.00 0.00 0.00 3.16
3501 11386 8.833231 TCTTATATGGTAGTACGGTGTAGTAC 57.167 38.462 11.69 11.69 45.31 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.