Multiple sequence alignment - TraesCS7D01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G107100 chr7D 100.000 2910 0 0 1 2910 64516697 64513788 0.000000e+00 5374.0
1 TraesCS7D01G107100 chr7D 81.806 1528 176 57 1421 2910 64437449 64435986 0.000000e+00 1188.0
2 TraesCS7D01G107100 chr7D 83.289 1125 102 33 1693 2787 64472348 64471280 0.000000e+00 957.0
3 TraesCS7D01G107100 chr7D 85.463 454 56 6 958 1406 64437942 64437494 5.680000e-127 464.0
4 TraesCS7D01G107100 chr7D 83.750 400 41 13 175 569 64473398 64473018 9.920000e-95 357.0
5 TraesCS7D01G107100 chr7D 94.737 95 5 0 1 95 64473489 64473395 6.500000e-32 148.0
6 TraesCS7D01G107100 chr7D 89.076 119 11 2 1295 1411 64472715 64472597 2.340000e-31 147.0
7 TraesCS7D01G107100 chr7D 94.048 84 5 0 1 84 64438819 64438736 8.460000e-26 128.0
8 TraesCS7D01G107100 chr7A 81.333 1650 166 58 1295 2909 68325689 68324147 0.000000e+00 1210.0
9 TraesCS7D01G107100 chr7A 80.742 1537 183 63 1421 2910 68228187 68226717 0.000000e+00 1094.0
10 TraesCS7D01G107100 chr7A 82.258 1116 115 40 1465 2559 68741330 68740277 0.000000e+00 887.0
11 TraesCS7D01G107100 chr7A 84.086 465 58 6 953 1412 68228679 68228226 4.450000e-118 435.0
12 TraesCS7D01G107100 chr7A 86.095 338 37 3 2545 2872 68740260 68739923 3.570000e-94 355.0
13 TraesCS7D01G107100 chr7A 82.957 399 41 10 175 564 68742228 68741848 4.650000e-88 335.0
14 TraesCS7D01G107100 chr7A 82.100 419 33 25 175 582 68326383 68325996 1.300000e-83 320.0
15 TraesCS7D01G107100 chr7A 79.701 335 46 10 600 923 97911741 97912064 3.770000e-54 222.0
16 TraesCS7D01G107100 chr7A 89.655 174 15 3 1295 1467 68741527 68741356 4.880000e-53 219.0
17 TraesCS7D01G107100 chr7A 77.202 386 52 26 580 937 8589714 8590091 2.960000e-45 193.0
18 TraesCS7D01G107100 chr7A 77.713 341 44 19 602 926 97912075 97911751 2.300000e-41 180.0
19 TraesCS7D01G107100 chr7A 92.632 95 7 0 1 95 68326474 68326380 1.410000e-28 137.0
20 TraesCS7D01G107100 chr7A 95.238 84 4 0 1 84 68229416 68229333 1.820000e-27 134.0
21 TraesCS7D01G107100 chr7A 91.579 95 8 0 1 95 68742319 68742225 6.540000e-27 132.0
22 TraesCS7D01G107100 chr7B 81.184 1419 158 57 1529 2902 6066937 6065583 0.000000e+00 1040.0
23 TraesCS7D01G107100 chr7B 79.712 1528 179 73 1421 2910 5982361 5980927 0.000000e+00 983.0
24 TraesCS7D01G107100 chr7B 85.403 459 57 7 953 1406 5982859 5982406 4.390000e-128 468.0
25 TraesCS7D01G107100 chr7B 83.133 415 30 18 175 582 6068071 6067690 2.780000e-90 342.0
26 TraesCS7D01G107100 chr7B 80.064 311 44 10 614 914 740945767 740945465 6.320000e-52 215.0
27 TraesCS7D01G107100 chr7B 77.231 325 45 18 615 914 741458849 741459169 2.320000e-36 163.0
28 TraesCS7D01G107100 chr7B 83.929 168 21 6 787 951 689699209 689699045 3.880000e-34 156.0
29 TraesCS7D01G107100 chr7B 93.684 95 6 0 1 95 6068162 6068068 3.020000e-30 143.0
30 TraesCS7D01G107100 chr7B 95.238 84 4 0 1 84 5983599 5983516 1.820000e-27 134.0
31 TraesCS7D01G107100 chr7B 95.833 72 2 1 583 654 1300657 1300727 6.590000e-22 115.0
32 TraesCS7D01G107100 chr7B 86.047 86 11 1 92 177 135080629 135080713 1.110000e-14 91.6
33 TraesCS7D01G107100 chr7B 86.047 86 11 1 92 177 423361043 423360959 1.110000e-14 91.6
34 TraesCS7D01G107100 chr6D 80.990 384 44 16 583 951 373393107 373392738 7.940000e-71 278.0
35 TraesCS7D01G107100 chr6A 87.449 247 21 3 2584 2820 260129199 260129445 2.860000e-70 276.0
36 TraesCS7D01G107100 chr6A 77.259 343 53 16 610 935 20298719 20299053 8.290000e-41 178.0
37 TraesCS7D01G107100 chrUn 87.149 249 22 4 2584 2822 93421291 93421539 1.030000e-69 274.0
38 TraesCS7D01G107100 chrUn 87.149 249 22 3 2584 2822 455370683 455370435 1.030000e-69 274.0
39 TraesCS7D01G107100 chrUn 77.860 271 31 18 656 915 30236146 30236398 1.090000e-29 141.0
40 TraesCS7D01G107100 chr5D 87.149 249 22 3 2584 2822 503208965 503208717 1.030000e-69 274.0
41 TraesCS7D01G107100 chr5D 87.149 249 22 4 2584 2822 503209481 503209233 1.030000e-69 274.0
42 TraesCS7D01G107100 chr5D 86.747 249 23 3 2584 2822 6197731 6197979 4.780000e-68 268.0
43 TraesCS7D01G107100 chr5D 90.099 101 8 2 1 100 2300644 2300743 2.350000e-26 130.0
44 TraesCS7D01G107100 chr1D 87.149 249 22 3 2584 2822 206073791 206074039 1.030000e-69 274.0
45 TraesCS7D01G107100 chr1D 86.747 249 23 3 2584 2822 254501571 254501323 4.780000e-68 268.0
46 TraesCS7D01G107100 chr2D 80.000 380 46 16 572 926 536904994 536905368 1.340000e-63 254.0
47 TraesCS7D01G107100 chr2D 80.240 334 46 8 609 926 484911151 484911480 1.740000e-57 233.0
48 TraesCS7D01G107100 chr5A 79.211 380 51 13 176 554 1266658 1267010 3.750000e-59 239.0
49 TraesCS7D01G107100 chr6B 80.488 328 42 12 614 927 561042574 561042893 6.270000e-57 231.0
50 TraesCS7D01G107100 chr6B 86.047 86 11 1 92 177 472357915 472357999 1.110000e-14 91.6
51 TraesCS7D01G107100 chr3A 79.143 350 42 17 600 926 738202787 738203128 2.270000e-51 213.0
52 TraesCS7D01G107100 chr3A 78.167 371 44 11 582 926 738203156 738202797 4.920000e-48 202.0
53 TraesCS7D01G107100 chr5B 79.672 305 47 11 656 951 534588344 534588642 3.800000e-49 206.0
54 TraesCS7D01G107100 chr5B 93.103 87 4 2 1 86 3851867 3851782 3.040000e-25 126.0
55 TraesCS7D01G107100 chr5B 95.714 70 3 0 583 652 711445721 711445652 2.370000e-21 113.0
56 TraesCS7D01G107100 chr3D 76.709 395 53 16 583 951 608202894 608203275 1.780000e-42 183.0
57 TraesCS7D01G107100 chr2A 83.648 159 21 5 772 926 753474962 753474805 8.400000e-31 145.0
58 TraesCS7D01G107100 chr4B 87.209 86 10 1 92 177 207913471 207913387 2.390000e-16 97.1
59 TraesCS7D01G107100 chr4A 86.047 86 11 1 92 177 675683902 675683818 1.110000e-14 91.6
60 TraesCS7D01G107100 chr3B 86.047 86 11 1 92 177 632411278 632411194 1.110000e-14 91.6
61 TraesCS7D01G107100 chr3B 86.047 86 11 1 92 177 766477440 766477356 1.110000e-14 91.6
62 TraesCS7D01G107100 chr2B 86.047 86 11 1 92 177 712627664 712627748 1.110000e-14 91.6
63 TraesCS7D01G107100 chr1B 86.047 86 11 1 92 177 655665369 655665453 1.110000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G107100 chr7D 64513788 64516697 2909 True 5374.000000 5374 100.000000 1 2910 1 chr7D.!!$R1 2909
1 TraesCS7D01G107100 chr7D 64435986 64438819 2833 True 593.333333 1188 87.105667 1 2910 3 chr7D.!!$R2 2909
2 TraesCS7D01G107100 chr7D 64471280 64473489 2209 True 402.250000 957 87.713000 1 2787 4 chr7D.!!$R3 2786
3 TraesCS7D01G107100 chr7A 68324147 68326474 2327 True 555.666667 1210 85.355000 1 2909 3 chr7A.!!$R3 2908
4 TraesCS7D01G107100 chr7A 68226717 68229416 2699 True 554.333333 1094 86.688667 1 2910 3 chr7A.!!$R2 2909
5 TraesCS7D01G107100 chr7A 68739923 68742319 2396 True 385.600000 887 86.508800 1 2872 5 chr7A.!!$R4 2871
6 TraesCS7D01G107100 chr7B 5980927 5983599 2672 True 528.333333 983 86.784333 1 2910 3 chr7B.!!$R4 2909
7 TraesCS7D01G107100 chr7B 6065583 6068162 2579 True 508.333333 1040 86.000333 1 2902 3 chr7B.!!$R5 2901
8 TraesCS7D01G107100 chr5D 503208717 503209481 764 True 274.000000 274 87.149000 2584 2822 2 chr5D.!!$R1 238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 967 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.0 0.0 0.0 43.62 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2785 0.108377 TCGTCCACGCATGCACTAAT 60.108 50.0 19.57 0.0 39.6 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 7.450124 TGTTCTTGAGTTAGTACTACCTCTG 57.550 40.000 23.25 17.02 33.84 3.35
105 106 7.504911 TGTTCTTGAGTTAGTACTACCTCTGTT 59.495 37.037 23.25 0.00 33.84 3.16
106 107 8.358895 GTTCTTGAGTTAGTACTACCTCTGTTT 58.641 37.037 23.25 0.00 33.84 2.83
107 108 8.474710 TCTTGAGTTAGTACTACCTCTGTTTT 57.525 34.615 23.25 0.00 33.84 2.43
108 109 8.921205 TCTTGAGTTAGTACTACCTCTGTTTTT 58.079 33.333 23.25 0.00 33.84 1.94
135 341 8.816640 AATGTAAGACATTTTGGCAGTTTAAG 57.183 30.769 0.00 0.00 45.80 1.85
140 346 6.507023 AGACATTTTGGCAGTTTAAGTTGAG 58.493 36.000 0.00 0.00 0.00 3.02
141 347 5.049828 ACATTTTGGCAGTTTAAGTTGAGC 58.950 37.500 0.00 0.00 0.00 4.26
144 350 4.568152 TTGGCAGTTTAAGTTGAGCTTC 57.432 40.909 0.00 0.00 38.57 3.86
145 351 2.884639 TGGCAGTTTAAGTTGAGCTTCC 59.115 45.455 0.00 0.00 38.57 3.46
146 352 2.884639 GGCAGTTTAAGTTGAGCTTCCA 59.115 45.455 0.00 0.00 38.57 3.53
147 353 3.317993 GGCAGTTTAAGTTGAGCTTCCAA 59.682 43.478 0.00 0.00 38.57 3.53
148 354 4.202111 GGCAGTTTAAGTTGAGCTTCCAAA 60.202 41.667 0.00 0.00 38.57 3.28
150 356 5.810074 GCAGTTTAAGTTGAGCTTCCAAAAA 59.190 36.000 0.00 0.00 38.57 1.94
151 357 6.019559 GCAGTTTAAGTTGAGCTTCCAAAAAG 60.020 38.462 0.00 0.00 38.57 2.27
155 361 5.859205 AAGTTGAGCTTCCAAAAAGTCAT 57.141 34.783 0.00 0.00 30.06 3.06
156 362 6.959639 AAGTTGAGCTTCCAAAAAGTCATA 57.040 33.333 0.00 0.00 30.06 2.15
165 371 9.920946 AGCTTCCAAAAAGTCATATATTTAGGA 57.079 29.630 0.00 0.00 0.00 2.94
176 382 9.393786 AGTCATATATTTAGGAACATAGGGTGT 57.606 33.333 0.00 0.00 44.84 4.16
306 516 1.263484 GCCATGCATGTCAAGATCTCG 59.737 52.381 24.58 6.89 0.00 4.04
311 521 1.592081 GCATGTCAAGATCTCGCACTC 59.408 52.381 0.00 0.00 0.00 3.51
321 531 0.727970 TCTCGCACTCGAAGACTAGC 59.272 55.000 0.00 0.00 44.98 3.42
322 532 0.730265 CTCGCACTCGAAGACTAGCT 59.270 55.000 0.00 0.00 44.98 3.32
323 533 0.448197 TCGCACTCGAAGACTAGCTG 59.552 55.000 0.00 0.00 42.44 4.24
377 588 4.336889 TTGTTGTAGTGACTGGAGAAGG 57.663 45.455 0.00 0.00 0.00 3.46
378 589 2.037251 TGTTGTAGTGACTGGAGAAGGC 59.963 50.000 0.00 0.00 0.00 4.35
461 793 0.470833 TGGGAGAGGAGCTATCTGGC 60.471 60.000 5.68 0.00 0.00 4.85
469 801 0.813210 GAGCTATCTGGCACCACTGC 60.813 60.000 0.00 0.00 43.41 4.40
481 813 0.969917 ACCACTGCTCGAGATCTGCT 60.970 55.000 18.75 0.00 0.00 4.24
486 818 2.289320 ACTGCTCGAGATCTGCTGTTTT 60.289 45.455 18.75 0.00 35.85 2.43
545 877 4.043059 AGAAAGAGGAAGGTACCCTTTTCC 59.957 45.833 19.27 19.27 44.82 3.13
559 895 1.895798 CTTTTCCTTGCCCTTCCCTTC 59.104 52.381 0.00 0.00 0.00 3.46
564 900 0.999712 CTTGCCCTTCCCTTCCCTTA 59.000 55.000 0.00 0.00 0.00 2.69
570 906 3.565670 GCCCTTCCCTTCCCTTATTTTCA 60.566 47.826 0.00 0.00 0.00 2.69
573 909 5.363868 CCCTTCCCTTCCCTTATTTTCATTC 59.636 44.000 0.00 0.00 0.00 2.67
598 934 3.586470 TTTTGGGAAAGTAGTGGCTGA 57.414 42.857 0.00 0.00 0.00 4.26
599 935 3.586470 TTTGGGAAAGTAGTGGCTGAA 57.414 42.857 0.00 0.00 0.00 3.02
600 936 2.561478 TGGGAAAGTAGTGGCTGAAC 57.439 50.000 0.00 0.00 0.00 3.18
601 937 1.073284 TGGGAAAGTAGTGGCTGAACC 59.927 52.381 0.00 0.00 39.84 3.62
602 938 1.613520 GGGAAAGTAGTGGCTGAACCC 60.614 57.143 0.00 0.00 37.83 4.11
603 939 1.613520 GGAAAGTAGTGGCTGAACCCC 60.614 57.143 0.00 0.00 37.83 4.95
604 940 1.073284 GAAAGTAGTGGCTGAACCCCA 59.927 52.381 0.00 0.00 37.83 4.96
605 941 0.693049 AAGTAGTGGCTGAACCCCAG 59.307 55.000 0.00 0.00 45.67 4.45
612 948 2.046892 CTGAACCCCAGCTCGGTG 60.047 66.667 2.70 0.00 35.89 4.94
613 949 4.329545 TGAACCCCAGCTCGGTGC 62.330 66.667 2.70 1.76 43.29 5.01
614 950 4.329545 GAACCCCAGCTCGGTGCA 62.330 66.667 2.70 0.00 45.94 4.57
615 951 4.643387 AACCCCAGCTCGGTGCAC 62.643 66.667 8.80 8.80 45.94 4.57
626 962 2.904866 GGTGCACCCACGCAAGAA 60.905 61.111 26.31 0.00 45.14 2.52
627 963 2.485795 GGTGCACCCACGCAAGAAA 61.486 57.895 26.31 0.00 45.14 2.52
628 964 1.435515 GTGCACCCACGCAAGAAAA 59.564 52.632 5.22 0.00 45.14 2.29
629 965 0.869880 GTGCACCCACGCAAGAAAAC 60.870 55.000 5.22 0.00 45.14 2.43
630 966 1.315981 TGCACCCACGCAAGAAAACA 61.316 50.000 0.00 0.00 39.45 2.83
631 967 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.000 0.00 0.00 43.62 2.71
632 968 1.268352 GCACCCACGCAAGAAAACATA 59.732 47.619 0.00 0.00 43.62 2.29
633 969 2.668279 GCACCCACGCAAGAAAACATAG 60.668 50.000 0.00 0.00 43.62 2.23
634 970 1.539827 ACCCACGCAAGAAAACATAGC 59.460 47.619 0.00 0.00 43.62 2.97
635 971 1.539388 CCCACGCAAGAAAACATAGCA 59.461 47.619 0.00 0.00 43.62 3.49
636 972 2.030363 CCCACGCAAGAAAACATAGCAA 60.030 45.455 0.00 0.00 43.62 3.91
637 973 3.551863 CCCACGCAAGAAAACATAGCAAA 60.552 43.478 0.00 0.00 43.62 3.68
638 974 4.047822 CCACGCAAGAAAACATAGCAAAA 58.952 39.130 0.00 0.00 43.62 2.44
639 975 4.085107 CCACGCAAGAAAACATAGCAAAAC 60.085 41.667 0.00 0.00 43.62 2.43
640 976 4.502282 CACGCAAGAAAACATAGCAAAACA 59.498 37.500 0.00 0.00 43.62 2.83
641 977 5.175491 CACGCAAGAAAACATAGCAAAACAT 59.825 36.000 0.00 0.00 43.62 2.71
642 978 5.752955 ACGCAAGAAAACATAGCAAAACATT 59.247 32.000 0.00 0.00 43.62 2.71
643 979 6.257630 ACGCAAGAAAACATAGCAAAACATTT 59.742 30.769 0.00 0.00 43.62 2.32
644 980 6.787043 CGCAAGAAAACATAGCAAAACATTTC 59.213 34.615 0.00 0.00 43.02 2.17
645 981 7.516470 CGCAAGAAAACATAGCAAAACATTTCA 60.516 33.333 0.00 0.00 43.02 2.69
646 982 8.121708 GCAAGAAAACATAGCAAAACATTTCAA 58.878 29.630 0.00 0.00 0.00 2.69
647 983 9.985318 CAAGAAAACATAGCAAAACATTTCAAA 57.015 25.926 0.00 0.00 0.00 2.69
682 1018 9.918630 GGGAATAATTATGAACAAATCTCATGG 57.081 33.333 0.00 0.00 35.21 3.66
687 1023 7.834881 ATTATGAACAAATCTCATGGATGCT 57.165 32.000 0.00 0.00 35.21 3.79
688 1024 7.649533 TTATGAACAAATCTCATGGATGCTT 57.350 32.000 0.00 0.00 35.21 3.91
689 1025 5.319140 TGAACAAATCTCATGGATGCTTG 57.681 39.130 0.00 0.77 34.45 4.01
690 1026 3.795623 ACAAATCTCATGGATGCTTGC 57.204 42.857 0.00 0.00 34.45 4.01
691 1027 3.093814 ACAAATCTCATGGATGCTTGCA 58.906 40.909 0.00 0.00 34.45 4.08
692 1028 3.512329 ACAAATCTCATGGATGCTTGCAA 59.488 39.130 0.00 0.00 34.45 4.08
693 1029 4.020928 ACAAATCTCATGGATGCTTGCAAA 60.021 37.500 0.00 0.00 34.45 3.68
694 1030 4.386867 AATCTCATGGATGCTTGCAAAG 57.613 40.909 0.00 0.00 39.49 2.77
695 1031 3.767673 AATCTCATGGATGCTTGCAAAGT 59.232 39.130 0.00 0.00 38.99 2.66
696 1032 4.222145 AATCTCATGGATGCTTGCAAAGTT 59.778 37.500 0.00 0.00 38.99 2.66
697 1033 5.279809 AATCTCATGGATGCTTGCAAAGTTT 60.280 36.000 0.00 0.00 38.99 2.66
698 1034 6.743208 AATCTCATGGATGCTTGCAAAGTTTT 60.743 34.615 0.00 0.00 38.99 2.43
699 1035 8.693400 AATCTCATGGATGCTTGCAAAGTTTTG 61.693 37.037 0.00 0.28 38.99 2.44
708 1044 5.799681 CTTGCAAAGTTTTGTGGTCAAAT 57.200 34.783 0.00 0.00 39.70 2.32
709 1045 6.900568 CTTGCAAAGTTTTGTGGTCAAATA 57.099 33.333 0.00 0.00 39.70 1.40
710 1046 7.301068 CTTGCAAAGTTTTGTGGTCAAATAA 57.699 32.000 0.00 0.00 39.70 1.40
711 1047 7.856145 TTGCAAAGTTTTGTGGTCAAATAAT 57.144 28.000 0.00 0.00 42.14 1.28
712 1048 8.948631 TTGCAAAGTTTTGTGGTCAAATAATA 57.051 26.923 0.00 0.00 42.14 0.98
713 1049 9.553064 TTGCAAAGTTTTGTGGTCAAATAATAT 57.447 25.926 0.00 0.00 42.14 1.28
714 1050 9.202273 TGCAAAGTTTTGTGGTCAAATAATATC 57.798 29.630 6.48 0.00 42.14 1.63
715 1051 9.423061 GCAAAGTTTTGTGGTCAAATAATATCT 57.577 29.630 6.48 0.00 42.14 1.98
719 1055 8.960591 AGTTTTGTGGTCAAATAATATCTGAGG 58.039 33.333 0.00 0.00 42.14 3.86
720 1056 8.956426 GTTTTGTGGTCAAATAATATCTGAGGA 58.044 33.333 0.00 0.00 42.14 3.71
721 1057 8.737168 TTTGTGGTCAAATAATATCTGAGGAG 57.263 34.615 0.00 0.00 38.44 3.69
722 1058 7.437713 TGTGGTCAAATAATATCTGAGGAGT 57.562 36.000 0.00 0.00 0.00 3.85
723 1059 7.861629 TGTGGTCAAATAATATCTGAGGAGTT 58.138 34.615 0.00 0.00 0.00 3.01
724 1060 7.987458 TGTGGTCAAATAATATCTGAGGAGTTC 59.013 37.037 0.00 0.00 0.00 3.01
725 1061 8.207545 GTGGTCAAATAATATCTGAGGAGTTCT 58.792 37.037 0.00 0.00 0.00 3.01
726 1062 8.206867 TGGTCAAATAATATCTGAGGAGTTCTG 58.793 37.037 0.00 0.00 0.00 3.02
727 1063 8.207545 GGTCAAATAATATCTGAGGAGTTCTGT 58.792 37.037 0.00 0.00 0.00 3.41
760 1096 8.729805 AAAACCAAAATTACAAATTCTGCTCA 57.270 26.923 0.00 0.00 0.00 4.26
761 1097 8.729805 AAACCAAAATTACAAATTCTGCTCAA 57.270 26.923 0.00 0.00 0.00 3.02
762 1098 8.729805 AACCAAAATTACAAATTCTGCTCAAA 57.270 26.923 0.00 0.00 0.00 2.69
763 1099 8.141835 ACCAAAATTACAAATTCTGCTCAAAC 57.858 30.769 0.00 0.00 0.00 2.93
764 1100 7.768120 ACCAAAATTACAAATTCTGCTCAAACA 59.232 29.630 0.00 0.00 0.00 2.83
765 1101 8.277713 CCAAAATTACAAATTCTGCTCAAACAG 58.722 33.333 0.00 0.00 39.12 3.16
766 1102 8.819974 CAAAATTACAAATTCTGCTCAAACAGT 58.180 29.630 0.00 0.00 38.84 3.55
767 1103 7.935338 AATTACAAATTCTGCTCAAACAGTG 57.065 32.000 0.00 0.00 38.84 3.66
768 1104 3.709987 ACAAATTCTGCTCAAACAGTGC 58.290 40.909 0.00 0.00 38.84 4.40
769 1105 3.130869 ACAAATTCTGCTCAAACAGTGCA 59.869 39.130 0.00 0.00 43.83 4.57
770 1106 3.360249 AATTCTGCTCAAACAGTGCAC 57.640 42.857 9.40 9.40 41.43 4.57
771 1107 1.748950 TTCTGCTCAAACAGTGCACA 58.251 45.000 21.04 0.00 41.43 4.57
772 1108 1.971481 TCTGCTCAAACAGTGCACAT 58.029 45.000 21.04 3.29 41.43 3.21
773 1109 3.124578 TCTGCTCAAACAGTGCACATA 57.875 42.857 21.04 0.00 41.43 2.29
774 1110 3.475575 TCTGCTCAAACAGTGCACATAA 58.524 40.909 21.04 0.00 41.43 1.90
775 1111 3.882288 TCTGCTCAAACAGTGCACATAAA 59.118 39.130 21.04 0.00 41.43 1.40
776 1112 4.520111 TCTGCTCAAACAGTGCACATAAAT 59.480 37.500 21.04 0.00 41.43 1.40
777 1113 5.009911 TCTGCTCAAACAGTGCACATAAATT 59.990 36.000 21.04 3.62 41.43 1.82
778 1114 5.599732 TGCTCAAACAGTGCACATAAATTT 58.400 33.333 21.04 8.61 41.43 1.82
779 1115 6.047870 TGCTCAAACAGTGCACATAAATTTT 58.952 32.000 21.04 5.66 41.43 1.82
780 1116 6.018913 TGCTCAAACAGTGCACATAAATTTTG 60.019 34.615 21.04 16.45 41.43 2.44
781 1117 6.200665 GCTCAAACAGTGCACATAAATTTTGA 59.799 34.615 21.04 19.19 36.75 2.69
782 1118 7.568134 GCTCAAACAGTGCACATAAATTTTGAG 60.568 37.037 28.19 28.19 45.93 3.02
783 1119 7.264221 TCAAACAGTGCACATAAATTTTGAGT 58.736 30.769 21.04 0.00 30.37 3.41
784 1120 8.409371 TCAAACAGTGCACATAAATTTTGAGTA 58.591 29.630 21.04 1.22 30.37 2.59
785 1121 9.029243 CAAACAGTGCACATAAATTTTGAGTAA 57.971 29.630 21.04 0.00 0.00 2.24
786 1122 9.593134 AAACAGTGCACATAAATTTTGAGTAAA 57.407 25.926 21.04 0.00 0.00 2.01
787 1123 9.762933 AACAGTGCACATAAATTTTGAGTAAAT 57.237 25.926 21.04 0.00 38.08 1.40
788 1124 9.762933 ACAGTGCACATAAATTTTGAGTAAATT 57.237 25.926 21.04 0.00 45.97 1.82
813 1149 5.682943 TTTTGTACAAAACTCCTCGGATG 57.317 39.130 26.05 0.00 35.57 3.51
814 1150 4.345859 TTGTACAAAACTCCTCGGATGT 57.654 40.909 5.64 0.00 0.00 3.06
815 1151 4.345859 TGTACAAAACTCCTCGGATGTT 57.654 40.909 0.00 0.00 0.00 2.71
816 1152 5.471556 TGTACAAAACTCCTCGGATGTTA 57.528 39.130 0.00 0.00 0.00 2.41
817 1153 6.045072 TGTACAAAACTCCTCGGATGTTAT 57.955 37.500 0.00 0.00 0.00 1.89
818 1154 6.469410 TGTACAAAACTCCTCGGATGTTATT 58.531 36.000 0.00 0.00 0.00 1.40
819 1155 5.880054 ACAAAACTCCTCGGATGTTATTG 57.120 39.130 0.00 4.72 0.00 1.90
820 1156 5.556915 ACAAAACTCCTCGGATGTTATTGA 58.443 37.500 17.13 0.00 0.00 2.57
821 1157 5.411669 ACAAAACTCCTCGGATGTTATTGAC 59.588 40.000 17.13 0.00 0.00 3.18
822 1158 3.821421 ACTCCTCGGATGTTATTGACC 57.179 47.619 0.00 0.00 0.00 4.02
823 1159 3.104512 ACTCCTCGGATGTTATTGACCA 58.895 45.455 0.00 0.00 0.00 4.02
824 1160 3.118738 ACTCCTCGGATGTTATTGACCAC 60.119 47.826 0.00 0.00 0.00 4.16
825 1161 2.169769 TCCTCGGATGTTATTGACCACC 59.830 50.000 0.00 0.00 0.00 4.61
826 1162 2.093181 CCTCGGATGTTATTGACCACCA 60.093 50.000 0.00 0.00 0.00 4.17
827 1163 3.605634 CTCGGATGTTATTGACCACCAA 58.394 45.455 0.00 0.00 39.41 3.67
828 1164 4.006989 CTCGGATGTTATTGACCACCAAA 58.993 43.478 0.00 0.00 38.43 3.28
829 1165 4.399219 TCGGATGTTATTGACCACCAAAA 58.601 39.130 0.00 0.00 38.43 2.44
830 1166 5.013547 TCGGATGTTATTGACCACCAAAAT 58.986 37.500 0.00 0.00 38.43 1.82
831 1167 5.478679 TCGGATGTTATTGACCACCAAAATT 59.521 36.000 0.00 0.00 38.43 1.82
832 1168 6.015010 TCGGATGTTATTGACCACCAAAATTT 60.015 34.615 0.00 0.00 38.43 1.82
833 1169 6.090628 CGGATGTTATTGACCACCAAAATTTG 59.909 38.462 0.00 0.00 38.43 2.32
834 1170 6.128309 GGATGTTATTGACCACCAAAATTTGC 60.128 38.462 0.00 0.00 38.43 3.68
835 1171 5.674525 TGTTATTGACCACCAAAATTTGCA 58.325 33.333 0.00 0.00 38.43 4.08
836 1172 6.115446 TGTTATTGACCACCAAAATTTGCAA 58.885 32.000 0.00 0.00 38.43 4.08
837 1173 6.259608 TGTTATTGACCACCAAAATTTGCAAG 59.740 34.615 0.00 0.00 38.43 4.01
838 1174 2.559440 TGACCACCAAAATTTGCAAGC 58.441 42.857 0.00 0.00 0.00 4.01
839 1175 2.093288 TGACCACCAAAATTTGCAAGCA 60.093 40.909 0.00 0.00 0.00 3.91
840 1176 3.140623 GACCACCAAAATTTGCAAGCAT 58.859 40.909 0.00 0.00 0.00 3.79
841 1177 3.140623 ACCACCAAAATTTGCAAGCATC 58.859 40.909 0.00 0.00 0.00 3.91
842 1178 2.485038 CCACCAAAATTTGCAAGCATCC 59.515 45.455 0.00 0.00 0.00 3.51
843 1179 3.139850 CACCAAAATTTGCAAGCATCCA 58.860 40.909 0.00 0.00 0.00 3.41
844 1180 3.754323 CACCAAAATTTGCAAGCATCCAT 59.246 39.130 0.00 0.00 0.00 3.41
845 1181 4.936411 CACCAAAATTTGCAAGCATCCATA 59.064 37.500 0.00 0.00 0.00 2.74
846 1182 5.411977 CACCAAAATTTGCAAGCATCCATAA 59.588 36.000 0.00 0.00 0.00 1.90
847 1183 5.412286 ACCAAAATTTGCAAGCATCCATAAC 59.588 36.000 0.00 0.00 0.00 1.89
848 1184 5.411977 CCAAAATTTGCAAGCATCCATAACA 59.588 36.000 0.00 0.00 0.00 2.41
849 1185 6.094325 CCAAAATTTGCAAGCATCCATAACAT 59.906 34.615 0.00 0.00 0.00 2.71
850 1186 7.362229 CCAAAATTTGCAAGCATCCATAACATT 60.362 33.333 0.00 0.00 0.00 2.71
851 1187 7.690952 AAATTTGCAAGCATCCATAACATTT 57.309 28.000 0.00 0.00 0.00 2.32
852 1188 6.671614 ATTTGCAAGCATCCATAACATTTG 57.328 33.333 0.00 0.00 0.00 2.32
853 1189 4.804868 TGCAAGCATCCATAACATTTGT 57.195 36.364 0.00 0.00 0.00 2.83
854 1190 5.149973 TGCAAGCATCCATAACATTTGTT 57.850 34.783 1.08 1.08 41.73 2.83
855 1191 5.170021 TGCAAGCATCCATAACATTTGTTC 58.830 37.500 0.00 0.00 39.31 3.18
856 1192 5.170021 GCAAGCATCCATAACATTTGTTCA 58.830 37.500 0.00 0.00 39.31 3.18
857 1193 5.813672 GCAAGCATCCATAACATTTGTTCAT 59.186 36.000 0.00 0.00 39.31 2.57
858 1194 6.979817 GCAAGCATCCATAACATTTGTTCATA 59.020 34.615 0.00 0.00 39.31 2.15
859 1195 7.168637 GCAAGCATCCATAACATTTGTTCATAG 59.831 37.037 0.00 0.00 39.31 2.23
860 1196 7.886629 AGCATCCATAACATTTGTTCATAGT 57.113 32.000 0.00 0.00 39.31 2.12
861 1197 7.934457 AGCATCCATAACATTTGTTCATAGTC 58.066 34.615 0.00 0.00 39.31 2.59
862 1198 7.557358 AGCATCCATAACATTTGTTCATAGTCA 59.443 33.333 0.00 0.00 39.31 3.41
863 1199 8.355169 GCATCCATAACATTTGTTCATAGTCAT 58.645 33.333 0.00 0.00 39.31 3.06
866 1202 8.902806 TCCATAACATTTGTTCATAGTCATTCC 58.097 33.333 0.00 0.00 39.31 3.01
867 1203 8.137437 CCATAACATTTGTTCATAGTCATTCCC 58.863 37.037 0.00 0.00 39.31 3.97
868 1204 8.685427 CATAACATTTGTTCATAGTCATTCCCA 58.315 33.333 0.00 0.00 39.31 4.37
869 1205 6.515272 ACATTTGTTCATAGTCATTCCCAC 57.485 37.500 0.00 0.00 0.00 4.61
870 1206 6.009589 ACATTTGTTCATAGTCATTCCCACA 58.990 36.000 0.00 0.00 0.00 4.17
871 1207 6.493115 ACATTTGTTCATAGTCATTCCCACAA 59.507 34.615 0.00 0.00 0.00 3.33
872 1208 6.968263 TTTGTTCATAGTCATTCCCACAAA 57.032 33.333 0.00 0.00 32.02 2.83
873 1209 6.573664 TTGTTCATAGTCATTCCCACAAAG 57.426 37.500 0.00 0.00 0.00 2.77
874 1210 5.630121 TGTTCATAGTCATTCCCACAAAGT 58.370 37.500 0.00 0.00 0.00 2.66
875 1211 6.068010 TGTTCATAGTCATTCCCACAAAGTT 58.932 36.000 0.00 0.00 0.00 2.66
876 1212 6.549364 TGTTCATAGTCATTCCCACAAAGTTT 59.451 34.615 0.00 0.00 0.00 2.66
877 1213 6.817765 TCATAGTCATTCCCACAAAGTTTC 57.182 37.500 0.00 0.00 0.00 2.78
878 1214 6.303054 TCATAGTCATTCCCACAAAGTTTCA 58.697 36.000 0.00 0.00 0.00 2.69
879 1215 6.430925 TCATAGTCATTCCCACAAAGTTTCAG 59.569 38.462 0.00 0.00 0.00 3.02
880 1216 4.792068 AGTCATTCCCACAAAGTTTCAGA 58.208 39.130 0.00 0.00 0.00 3.27
881 1217 5.388654 AGTCATTCCCACAAAGTTTCAGAT 58.611 37.500 0.00 0.00 0.00 2.90
882 1218 5.835280 AGTCATTCCCACAAAGTTTCAGATT 59.165 36.000 0.00 0.00 0.00 2.40
883 1219 6.324770 AGTCATTCCCACAAAGTTTCAGATTT 59.675 34.615 0.00 0.00 0.00 2.17
884 1220 6.986231 GTCATTCCCACAAAGTTTCAGATTTT 59.014 34.615 0.00 0.00 0.00 1.82
885 1221 7.495606 GTCATTCCCACAAAGTTTCAGATTTTT 59.504 33.333 0.00 0.00 0.00 1.94
921 1257 8.692110 TTTTGCTATATTTTCTTGCATGAGTG 57.308 30.769 0.00 0.00 33.50 3.51
931 1267 4.749323 CATGAGTGCACCATGGGT 57.251 55.556 27.35 7.01 38.12 4.51
997 1336 4.457257 ACAGCTGATTTCTTTAGGAGCAAC 59.543 41.667 23.35 0.00 0.00 4.17
1008 1347 2.872408 GGAGCAACTTATGGCTGCA 58.128 52.632 0.50 0.00 46.27 4.41
1014 1353 2.686915 GCAACTTATGGCTGCAGAGATT 59.313 45.455 20.43 0.66 36.09 2.40
1051 1390 6.347725 CCAAAAGGTTCACTACATCTTCTTCG 60.348 42.308 0.00 0.00 0.00 3.79
1052 1391 3.851098 AGGTTCACTACATCTTCTTCGC 58.149 45.455 0.00 0.00 0.00 4.70
1068 1407 1.882912 TCGCATGTTCTTGCTTCTGT 58.117 45.000 8.57 0.00 40.54 3.41
1109 1448 3.513119 AGCTCAGTTAGTGCTGATTCTCA 59.487 43.478 0.00 0.00 44.80 3.27
1139 1478 6.704493 TGTGTCTGTTATTAACAAGTGAGGTC 59.296 38.462 10.32 0.00 41.61 3.85
1154 1493 5.462240 AGTGAGGTCTGATGAGATGGAATA 58.538 41.667 0.00 0.00 0.00 1.75
1180 1519 4.952071 TTTGCAGGGATTTCACATTCAA 57.048 36.364 0.00 0.00 0.00 2.69
1204 1543 6.478512 AAGGAAAATGTAGAACTTGGCAAA 57.521 33.333 0.00 0.00 0.00 3.68
1252 1591 3.540314 ATAGAGCTGCAGAAGAAGGTG 57.460 47.619 20.43 0.00 29.02 4.00
1283 1622 7.661437 GTGCCATGGATTCTCATGTACTAAATA 59.339 37.037 18.40 0.00 42.02 1.40
1285 1624 9.066892 GCCATGGATTCTCATGTACTAAATAAA 57.933 33.333 18.40 0.00 42.02 1.40
1289 1628 9.851686 TGGATTCTCATGTACTAAATAAATGCT 57.148 29.630 0.00 0.00 29.40 3.79
1337 1711 4.298103 AGCTTGTCATCTGAAAGTCCAT 57.702 40.909 0.00 0.00 33.76 3.41
1343 1717 9.494271 GCTTGTCATCTGAAAGTCCATATATAA 57.506 33.333 0.00 0.00 33.76 0.98
1376 1762 5.762825 ATCATTGATGAACCACATGCTAC 57.237 39.130 0.00 0.00 40.69 3.58
1381 1767 3.501828 TGATGAACCACATGCTACAACAC 59.498 43.478 0.00 0.00 39.56 3.32
1384 1770 3.501828 TGAACCACATGCTACAACACATC 59.498 43.478 0.00 0.00 0.00 3.06
1413 1799 4.083855 GCAAGTCATCGAAAGACATGAACA 60.084 41.667 22.59 0.00 46.97 3.18
1414 1800 5.377358 CAAGTCATCGAAAGACATGAACAC 58.623 41.667 19.50 0.00 46.97 3.32
1415 1801 4.631131 AGTCATCGAAAGACATGAACACA 58.369 39.130 19.50 0.00 46.97 3.72
1469 1913 9.401058 CAAATTTGAAGGATCAGTATAGAACCT 57.599 33.333 13.08 0.00 41.97 3.50
1507 1951 6.371548 TCTGGTGGATTTTATTCAAGACTTCG 59.628 38.462 0.00 0.00 0.00 3.79
1522 1966 5.317733 AGACTTCGCATCCTATATAGTGC 57.682 43.478 13.00 13.00 0.00 4.40
1550 2188 4.142816 GCATGTCTAACGCAGATTCAAGTT 60.143 41.667 0.00 0.00 35.17 2.66
1553 2191 7.677276 GCATGTCTAACGCAGATTCAAGTTAAT 60.677 37.037 0.00 0.00 35.17 1.40
1605 2247 4.621034 GTGTTGGACAAAATAGAAATGCGG 59.379 41.667 0.00 0.00 0.00 5.69
1691 2384 8.624776 TCTAGCTGATATAACATCCATCATACG 58.375 37.037 0.00 0.00 0.00 3.06
1736 2438 4.917906 AATATGGAAGGGAGCTGATACC 57.082 45.455 0.00 0.00 0.00 2.73
1746 2448 3.307762 GGGAGCTGATACCTGACAAACTT 60.308 47.826 0.00 0.00 0.00 2.66
1753 2455 7.665559 AGCTGATACCTGACAAACTTTTAATGA 59.334 33.333 0.00 0.00 0.00 2.57
1780 2482 1.670791 TTAATTAGCTTTCCGGGGCG 58.329 50.000 0.00 0.00 0.00 6.13
1999 2707 1.033202 TGTGCTCAATCGCATGCCAT 61.033 50.000 13.15 0.78 42.62 4.40
2001 2709 1.033202 TGCTCAATCGCATGCCATGT 61.033 50.000 13.15 0.00 34.44 3.21
2003 2711 1.334419 GCTCAATCGCATGCCATGTAC 60.334 52.381 13.15 2.32 0.00 2.90
2004 2712 2.216046 CTCAATCGCATGCCATGTACT 58.784 47.619 13.15 0.00 0.00 2.73
2005 2713 1.941975 TCAATCGCATGCCATGTACTG 59.058 47.619 13.15 0.00 0.00 2.74
2028 2742 9.090692 ACTGCAATTACATTTCTAAATTCATGC 57.909 29.630 0.00 0.00 0.00 4.06
2062 2784 2.823747 ACCAGACAGCGTCAACAGTATA 59.176 45.455 10.52 0.00 34.60 1.47
2063 2785 3.257375 ACCAGACAGCGTCAACAGTATAA 59.743 43.478 10.52 0.00 34.60 0.98
2065 2787 4.870426 CCAGACAGCGTCAACAGTATAATT 59.130 41.667 10.52 0.00 34.60 1.40
2108 2830 2.358898 AGCTCTTTCGTGTGCAATTTGT 59.641 40.909 0.00 0.00 0.00 2.83
2162 2885 8.367911 CAGACACCTGCTTAGAACCATATATAA 58.632 37.037 0.00 0.00 33.07 0.98
2188 2911 2.942376 TGGTGTTGTCACAGACATTGTC 59.058 45.455 8.82 8.82 42.40 3.18
2190 2913 3.376859 GGTGTTGTCACAGACATTGTCAA 59.623 43.478 18.57 1.25 42.40 3.18
2191 2914 4.496341 GGTGTTGTCACAGACATTGTCAAG 60.496 45.833 18.57 12.55 42.40 3.02
2200 2923 3.499537 CAGACATTGTCAAGTAGCAGCAA 59.500 43.478 18.57 0.00 34.60 3.91
2333 3067 9.712359 CTTGTATATGTTGATCACAATTCACAG 57.288 33.333 0.00 0.00 39.50 3.66
2350 3084 7.651027 ATTCACAGCCTAATTAATGAGCTTT 57.349 32.000 4.78 0.00 0.00 3.51
2354 3088 6.529125 CACAGCCTAATTAATGAGCTTTTGTG 59.471 38.462 4.78 7.38 0.00 3.33
2362 3104 1.919918 TGAGCTTTTGTGTTTTGCGG 58.080 45.000 0.00 0.00 0.00 5.69
2389 3132 9.507329 GGAACCTAATTAATGAGCTGAATATGA 57.493 33.333 0.00 0.00 0.00 2.15
2392 3135 9.851686 ACCTAATTAATGAGCTGAATATGACAA 57.148 29.630 0.00 0.00 0.00 3.18
2402 3146 7.976175 TGAGCTGAATATGACAACTACTAAGTG 59.024 37.037 0.00 0.00 35.62 3.16
2418 3162 8.088981 ACTACTAAGTGTTTATTGTGAGTCAGG 58.911 37.037 0.00 0.00 33.57 3.86
2445 3190 2.407026 GGCCGTTTTACAGAAATTTGCG 59.593 45.455 0.00 0.00 0.00 4.85
2472 3217 6.969043 ACTTTGGAGGTCATGGTGAATTATA 58.031 36.000 0.00 0.00 0.00 0.98
2521 3266 5.299279 CCCACTTCCATACGCTTCAAATTAT 59.701 40.000 0.00 0.00 0.00 1.28
2522 3267 6.183360 CCCACTTCCATACGCTTCAAATTATT 60.183 38.462 0.00 0.00 0.00 1.40
2523 3268 7.257722 CCACTTCCATACGCTTCAAATTATTT 58.742 34.615 0.00 0.00 0.00 1.40
2524 3269 7.220683 CCACTTCCATACGCTTCAAATTATTTG 59.779 37.037 11.12 11.12 41.96 2.32
2525 3270 6.751888 ACTTCCATACGCTTCAAATTATTTGC 59.248 34.615 12.39 1.09 40.43 3.68
2526 3271 5.587289 TCCATACGCTTCAAATTATTTGCC 58.413 37.500 12.39 3.48 40.43 4.52
2527 3272 5.359576 TCCATACGCTTCAAATTATTTGCCT 59.640 36.000 12.39 0.00 40.43 4.75
2528 3273 6.544197 TCCATACGCTTCAAATTATTTGCCTA 59.456 34.615 12.39 0.91 40.43 3.93
2529 3274 6.857964 CCATACGCTTCAAATTATTTGCCTAG 59.142 38.462 12.39 10.21 40.43 3.02
2530 3275 7.255104 CCATACGCTTCAAATTATTTGCCTAGA 60.255 37.037 12.39 0.00 40.43 2.43
2531 3276 6.124088 ACGCTTCAAATTATTTGCCTAGAG 57.876 37.500 12.39 12.36 40.43 2.43
2534 3279 7.029563 CGCTTCAAATTATTTGCCTAGAGTTT 58.970 34.615 12.39 0.00 40.43 2.66
2536 3281 8.028938 GCTTCAAATTATTTGCCTAGAGTTTGA 58.971 33.333 12.39 0.00 40.43 2.69
2539 3284 9.023962 TCAAATTATTTGCCTAGAGTTTGACAT 57.976 29.630 12.39 0.00 40.43 3.06
2547 3292 4.180057 CCTAGAGTTTGACATCAGCAGTC 58.820 47.826 0.00 0.00 36.55 3.51
2566 3353 3.051264 AGTCTAGCCAACCCTACCCTATT 60.051 47.826 0.00 0.00 0.00 1.73
2571 3358 2.484241 GCCAACCCTACCCTATTACGTG 60.484 54.545 0.00 0.00 0.00 4.49
2599 3386 2.084546 CAAGCCCTTCTTTTACTCCGG 58.915 52.381 0.00 0.00 31.27 5.14
2606 3393 5.738495 GCCCTTCTTTTACTCCGGTAGTATC 60.738 48.000 12.60 0.00 40.41 2.24
2608 3395 5.067023 CCTTCTTTTACTCCGGTAGTATCGT 59.933 44.000 12.60 0.00 40.41 3.73
2611 3914 2.260844 TACTCCGGTAGTATCGTGGG 57.739 55.000 0.00 0.00 39.80 4.61
2698 4014 6.236409 AGAGATCATGTCACATGACTTGTTT 58.764 36.000 22.97 5.79 45.16 2.83
2703 4019 9.282247 GATCATGTCACATGACTTGTTTAATTC 57.718 33.333 22.97 8.60 45.16 2.17
2848 4191 0.178909 AAATGCCCACCCCAACATGA 60.179 50.000 0.00 0.00 0.00 3.07
2849 4192 0.178909 AATGCCCACCCCAACATGAA 60.179 50.000 0.00 0.00 0.00 2.57
2855 4198 1.269012 CACCCCAACATGAAGCCATT 58.731 50.000 0.00 0.00 0.00 3.16
2883 4226 6.093495 TGGAAAACGACTCATACATTTCCATC 59.907 38.462 12.38 0.00 46.42 3.51
2884 4227 6.436843 AAAACGACTCATACATTTCCATCC 57.563 37.500 0.00 0.00 0.00 3.51
2887 4230 5.844004 ACGACTCATACATTTCCATCCTAC 58.156 41.667 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 7.951591 ACTTAAACTGCCAAAATGTCTTACAT 58.048 30.769 0.00 0.00 41.31 2.29
113 114 7.918562 TCAACTTAAACTGCCAAAATGTCTTAC 59.081 33.333 0.00 0.00 0.00 2.34
114 115 8.001881 TCAACTTAAACTGCCAAAATGTCTTA 57.998 30.769 0.00 0.00 0.00 2.10
115 116 6.872920 TCAACTTAAACTGCCAAAATGTCTT 58.127 32.000 0.00 0.00 0.00 3.01
116 117 6.463995 TCAACTTAAACTGCCAAAATGTCT 57.536 33.333 0.00 0.00 0.00 3.41
118 119 5.049828 GCTCAACTTAAACTGCCAAAATGT 58.950 37.500 0.00 0.00 0.00 2.71
119 120 5.291971 AGCTCAACTTAAACTGCCAAAATG 58.708 37.500 0.00 0.00 0.00 2.32
121 122 5.337578 AAGCTCAACTTAAACTGCCAAAA 57.662 34.783 0.00 0.00 36.62 2.44
122 123 4.202111 GGAAGCTCAACTTAAACTGCCAAA 60.202 41.667 0.00 0.00 39.29 3.28
123 124 3.317993 GGAAGCTCAACTTAAACTGCCAA 59.682 43.478 0.00 0.00 39.29 4.52
125 126 2.884639 TGGAAGCTCAACTTAAACTGCC 59.115 45.455 0.00 0.00 39.29 4.85
126 127 4.568152 TTGGAAGCTCAACTTAAACTGC 57.432 40.909 0.00 0.00 39.29 4.40
129 130 7.033185 TGACTTTTTGGAAGCTCAACTTAAAC 58.967 34.615 0.00 0.00 39.29 2.01
130 131 7.164230 TGACTTTTTGGAAGCTCAACTTAAA 57.836 32.000 0.00 0.00 39.29 1.52
131 132 6.767524 TGACTTTTTGGAAGCTCAACTTAA 57.232 33.333 0.00 0.00 39.29 1.85
133 134 5.859205 ATGACTTTTTGGAAGCTCAACTT 57.141 34.783 0.00 0.00 42.98 2.66
135 341 9.860898 AAATATATGACTTTTTGGAAGCTCAAC 57.139 29.630 0.00 0.00 0.00 3.18
150 356 9.393786 ACACCCTATGTTCCTAAATATATGACT 57.606 33.333 0.00 0.00 38.98 3.41
220 426 9.841295 AAACCACTCAAATAACAACTACTTCTA 57.159 29.630 0.00 0.00 0.00 2.10
224 430 8.691661 ATGAAACCACTCAAATAACAACTACT 57.308 30.769 0.00 0.00 0.00 2.57
234 440 9.941325 TTAATTTGCATATGAAACCACTCAAAT 57.059 25.926 6.97 7.28 35.28 2.32
306 516 0.804156 GCCAGCTAGTCTTCGAGTGC 60.804 60.000 0.00 0.00 0.00 4.40
311 521 0.459237 CACTGGCCAGCTAGTCTTCG 60.459 60.000 33.06 6.18 35.55 3.79
321 531 1.843368 ACATGGATTTCACTGGCCAG 58.157 50.000 31.60 31.60 33.26 4.85
322 532 3.668141 ATACATGGATTTCACTGGCCA 57.332 42.857 4.71 4.71 34.45 5.36
323 533 5.594317 ACTAAATACATGGATTTCACTGGCC 59.406 40.000 19.32 0.00 31.51 5.36
353 564 5.765182 CCTTCTCCAGTCACTACAACAAAAT 59.235 40.000 0.00 0.00 0.00 1.82
364 575 0.898320 TAGCTGCCTTCTCCAGTCAC 59.102 55.000 0.00 0.00 32.93 3.67
368 579 1.686052 CTACCTAGCTGCCTTCTCCAG 59.314 57.143 0.00 0.00 0.00 3.86
461 793 0.805322 GCAGATCTCGAGCAGTGGTG 60.805 60.000 7.81 0.34 0.00 4.17
469 801 3.070018 ACCAAAAACAGCAGATCTCGAG 58.930 45.455 5.93 5.93 0.00 4.04
505 837 1.640428 TCTTACGGAATGCAAGCTCG 58.360 50.000 0.00 0.00 0.00 5.03
545 877 0.999712 TAAGGGAAGGGAAGGGCAAG 59.000 55.000 0.00 0.00 0.00 4.01
581 917 1.073284 GGTTCAGCCACTACTTTCCCA 59.927 52.381 0.00 0.00 37.17 4.37
582 918 1.613520 GGGTTCAGCCACTACTTTCCC 60.614 57.143 0.00 0.00 39.65 3.97
583 919 1.613520 GGGGTTCAGCCACTACTTTCC 60.614 57.143 0.00 0.00 37.78 3.13
584 920 1.073284 TGGGGTTCAGCCACTACTTTC 59.927 52.381 0.00 0.00 42.62 2.62
585 921 1.073923 CTGGGGTTCAGCCACTACTTT 59.926 52.381 0.00 0.00 42.62 2.66
586 922 0.693049 CTGGGGTTCAGCCACTACTT 59.307 55.000 0.00 0.00 42.62 2.24
587 923 2.377136 CTGGGGTTCAGCCACTACT 58.623 57.895 0.00 0.00 42.62 2.57
595 931 2.046892 CACCGAGCTGGGGTTCAG 60.047 66.667 19.90 0.00 44.64 3.02
596 932 4.329545 GCACCGAGCTGGGGTTCA 62.330 66.667 19.90 0.00 46.09 3.18
597 933 4.329545 TGCACCGAGCTGGGGTTC 62.330 66.667 19.90 7.91 46.09 3.62
598 934 4.643387 GTGCACCGAGCTGGGGTT 62.643 66.667 19.90 0.00 46.09 4.11
609 945 2.010582 TTTTCTTGCGTGGGTGCACC 62.011 55.000 28.57 28.57 46.25 5.01
610 946 0.869880 GTTTTCTTGCGTGGGTGCAC 60.870 55.000 8.80 8.80 46.25 4.57
611 947 1.315981 TGTTTTCTTGCGTGGGTGCA 61.316 50.000 0.00 0.00 44.61 4.57
612 948 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01
613 949 2.668279 GCTATGTTTTCTTGCGTGGGTG 60.668 50.000 0.00 0.00 0.00 4.61
614 950 1.539827 GCTATGTTTTCTTGCGTGGGT 59.460 47.619 0.00 0.00 0.00 4.51
615 951 1.539388 TGCTATGTTTTCTTGCGTGGG 59.461 47.619 0.00 0.00 0.00 4.61
616 952 2.987413 TGCTATGTTTTCTTGCGTGG 57.013 45.000 0.00 0.00 0.00 4.94
617 953 4.502282 TGTTTTGCTATGTTTTCTTGCGTG 59.498 37.500 0.00 0.00 0.00 5.34
618 954 4.677584 TGTTTTGCTATGTTTTCTTGCGT 58.322 34.783 0.00 0.00 0.00 5.24
619 955 5.827568 ATGTTTTGCTATGTTTTCTTGCG 57.172 34.783 0.00 0.00 0.00 4.85
620 956 7.629130 TGAAATGTTTTGCTATGTTTTCTTGC 58.371 30.769 0.00 0.00 0.00 4.01
621 957 9.985318 TTTGAAATGTTTTGCTATGTTTTCTTG 57.015 25.926 0.00 0.00 0.00 3.02
656 992 9.918630 CCATGAGATTTGTTCATAATTATTCCC 57.081 33.333 0.00 0.00 33.67 3.97
661 997 9.358406 AGCATCCATGAGATTTGTTCATAATTA 57.642 29.630 0.00 0.00 33.67 1.40
662 998 8.246430 AGCATCCATGAGATTTGTTCATAATT 57.754 30.769 0.00 0.00 33.67 1.40
663 999 7.834881 AGCATCCATGAGATTTGTTCATAAT 57.165 32.000 0.00 0.00 33.67 1.28
664 1000 7.485810 CAAGCATCCATGAGATTTGTTCATAA 58.514 34.615 0.00 0.00 33.67 1.90
665 1001 6.460537 GCAAGCATCCATGAGATTTGTTCATA 60.461 38.462 0.00 0.00 33.67 2.15
666 1002 5.681437 GCAAGCATCCATGAGATTTGTTCAT 60.681 40.000 0.00 0.00 35.73 2.57
667 1003 4.381185 GCAAGCATCCATGAGATTTGTTCA 60.381 41.667 0.00 0.00 30.59 3.18
668 1004 4.110482 GCAAGCATCCATGAGATTTGTTC 58.890 43.478 0.00 0.00 30.59 3.18
669 1005 3.512329 TGCAAGCATCCATGAGATTTGTT 59.488 39.130 0.00 0.00 30.59 2.83
670 1006 3.093814 TGCAAGCATCCATGAGATTTGT 58.906 40.909 0.00 0.00 30.59 2.83
671 1007 3.793797 TGCAAGCATCCATGAGATTTG 57.206 42.857 0.00 0.00 30.59 2.32
672 1008 4.222145 ACTTTGCAAGCATCCATGAGATTT 59.778 37.500 0.00 0.00 30.59 2.17
673 1009 3.767673 ACTTTGCAAGCATCCATGAGATT 59.232 39.130 0.00 0.00 30.59 2.40
674 1010 3.362706 ACTTTGCAAGCATCCATGAGAT 58.637 40.909 0.00 0.00 34.66 2.75
675 1011 2.799017 ACTTTGCAAGCATCCATGAGA 58.201 42.857 0.00 0.00 0.00 3.27
676 1012 3.587797 AACTTTGCAAGCATCCATGAG 57.412 42.857 0.00 0.00 0.00 2.90
677 1013 4.059511 CAAAACTTTGCAAGCATCCATGA 58.940 39.130 0.00 0.00 0.00 3.07
678 1014 3.810941 ACAAAACTTTGCAAGCATCCATG 59.189 39.130 0.00 0.00 41.79 3.66
679 1015 3.810941 CACAAAACTTTGCAAGCATCCAT 59.189 39.130 0.00 0.00 41.79 3.41
680 1016 3.196463 CACAAAACTTTGCAAGCATCCA 58.804 40.909 0.00 0.00 41.79 3.41
681 1017 2.545106 CCACAAAACTTTGCAAGCATCC 59.455 45.455 0.00 0.00 41.79 3.51
682 1018 3.197265 ACCACAAAACTTTGCAAGCATC 58.803 40.909 0.00 0.00 41.79 3.91
683 1019 3.197265 GACCACAAAACTTTGCAAGCAT 58.803 40.909 0.00 0.00 41.79 3.79
684 1020 2.028658 TGACCACAAAACTTTGCAAGCA 60.029 40.909 0.00 0.00 41.79 3.91
685 1021 2.615869 TGACCACAAAACTTTGCAAGC 58.384 42.857 0.00 0.00 41.79 4.01
686 1022 5.799681 ATTTGACCACAAAACTTTGCAAG 57.200 34.783 0.00 0.00 46.77 4.01
687 1023 7.856145 ATTATTTGACCACAAAACTTTGCAA 57.144 28.000 0.00 0.00 46.77 4.08
688 1024 9.202273 GATATTATTTGACCACAAAACTTTGCA 57.798 29.630 2.07 0.00 46.77 4.08
689 1025 9.423061 AGATATTATTTGACCACAAAACTTTGC 57.577 29.630 2.07 0.00 46.77 3.68
693 1029 8.960591 CCTCAGATATTATTTGACCACAAAACT 58.039 33.333 0.00 0.00 46.77 2.66
694 1030 8.956426 TCCTCAGATATTATTTGACCACAAAAC 58.044 33.333 0.00 0.00 46.77 2.43
695 1031 9.177608 CTCCTCAGATATTATTTGACCACAAAA 57.822 33.333 0.00 0.00 46.77 2.44
697 1033 7.861629 ACTCCTCAGATATTATTTGACCACAA 58.138 34.615 0.00 0.00 0.00 3.33
698 1034 7.437713 ACTCCTCAGATATTATTTGACCACA 57.562 36.000 0.00 0.00 0.00 4.17
699 1035 8.207545 AGAACTCCTCAGATATTATTTGACCAC 58.792 37.037 0.00 0.00 0.00 4.16
700 1036 8.206867 CAGAACTCCTCAGATATTATTTGACCA 58.793 37.037 0.00 0.00 0.00 4.02
701 1037 8.207545 ACAGAACTCCTCAGATATTATTTGACC 58.792 37.037 0.00 0.00 0.00 4.02
734 1070 9.171877 TGAGCAGAATTTGTAATTTTGGTTTTT 57.828 25.926 8.23 0.00 0.00 1.94
735 1071 8.729805 TGAGCAGAATTTGTAATTTTGGTTTT 57.270 26.923 8.23 0.00 0.00 2.43
736 1072 8.729805 TTGAGCAGAATTTGTAATTTTGGTTT 57.270 26.923 8.23 0.00 0.00 3.27
737 1073 8.611757 GTTTGAGCAGAATTTGTAATTTTGGTT 58.388 29.630 8.23 0.00 0.00 3.67
738 1074 7.768120 TGTTTGAGCAGAATTTGTAATTTTGGT 59.232 29.630 6.97 6.97 0.00 3.67
739 1075 8.140677 TGTTTGAGCAGAATTTGTAATTTTGG 57.859 30.769 5.26 0.00 0.00 3.28
740 1076 8.819974 ACTGTTTGAGCAGAATTTGTAATTTTG 58.180 29.630 1.73 0.00 39.62 2.44
741 1077 8.819974 CACTGTTTGAGCAGAATTTGTAATTTT 58.180 29.630 1.73 0.00 39.62 1.82
742 1078 7.042523 GCACTGTTTGAGCAGAATTTGTAATTT 60.043 33.333 1.73 0.00 39.62 1.82
743 1079 6.421801 GCACTGTTTGAGCAGAATTTGTAATT 59.578 34.615 1.73 0.00 39.62 1.40
744 1080 5.922544 GCACTGTTTGAGCAGAATTTGTAAT 59.077 36.000 1.73 0.00 39.62 1.89
745 1081 5.163571 TGCACTGTTTGAGCAGAATTTGTAA 60.164 36.000 1.73 0.00 37.35 2.41
746 1082 4.337836 TGCACTGTTTGAGCAGAATTTGTA 59.662 37.500 1.73 0.00 37.35 2.41
747 1083 3.130869 TGCACTGTTTGAGCAGAATTTGT 59.869 39.130 1.73 0.00 37.35 2.83
748 1084 3.488310 GTGCACTGTTTGAGCAGAATTTG 59.512 43.478 10.32 0.00 42.56 2.32
749 1085 3.130869 TGTGCACTGTTTGAGCAGAATTT 59.869 39.130 19.41 0.00 42.56 1.82
750 1086 2.689471 TGTGCACTGTTTGAGCAGAATT 59.311 40.909 19.41 0.00 42.56 2.17
751 1087 2.300433 TGTGCACTGTTTGAGCAGAAT 58.700 42.857 19.41 0.00 42.56 2.40
752 1088 1.748950 TGTGCACTGTTTGAGCAGAA 58.251 45.000 19.41 0.00 42.56 3.02
753 1089 1.971481 ATGTGCACTGTTTGAGCAGA 58.029 45.000 19.41 0.00 42.56 4.26
754 1090 3.902261 TTATGTGCACTGTTTGAGCAG 57.098 42.857 19.41 0.00 42.56 4.24
755 1091 4.852134 ATTTATGTGCACTGTTTGAGCA 57.148 36.364 19.41 0.00 39.83 4.26
756 1092 6.200665 TCAAAATTTATGTGCACTGTTTGAGC 59.799 34.615 19.41 0.00 31.89 4.26
757 1093 7.697352 TCAAAATTTATGTGCACTGTTTGAG 57.303 32.000 19.41 8.29 31.89 3.02
758 1094 7.264221 ACTCAAAATTTATGTGCACTGTTTGA 58.736 30.769 19.41 19.27 33.86 2.69
759 1095 7.467557 ACTCAAAATTTATGTGCACTGTTTG 57.532 32.000 19.41 16.63 0.00 2.93
760 1096 9.593134 TTTACTCAAAATTTATGTGCACTGTTT 57.407 25.926 19.41 8.71 0.00 2.83
761 1097 9.762933 ATTTACTCAAAATTTATGTGCACTGTT 57.237 25.926 19.41 5.59 33.91 3.16
762 1098 9.762933 AATTTACTCAAAATTTATGTGCACTGT 57.237 25.926 19.41 9.43 43.75 3.55
790 1126 5.591067 ACATCCGAGGAGTTTTGTACAAAAA 59.409 36.000 30.09 15.68 41.37 1.94
791 1127 5.127491 ACATCCGAGGAGTTTTGTACAAAA 58.873 37.500 26.05 26.05 37.90 2.44
792 1128 4.710324 ACATCCGAGGAGTTTTGTACAAA 58.290 39.130 17.01 17.01 0.00 2.83
793 1129 4.345859 ACATCCGAGGAGTTTTGTACAA 57.654 40.909 3.59 3.59 0.00 2.41
794 1130 4.345859 AACATCCGAGGAGTTTTGTACA 57.654 40.909 0.00 0.00 0.00 2.90
795 1131 6.592607 TCAATAACATCCGAGGAGTTTTGTAC 59.407 38.462 10.57 0.00 0.00 2.90
796 1132 6.592607 GTCAATAACATCCGAGGAGTTTTGTA 59.407 38.462 10.57 0.00 0.00 2.41
797 1133 5.411669 GTCAATAACATCCGAGGAGTTTTGT 59.588 40.000 10.57 2.30 0.00 2.83
798 1134 5.163754 GGTCAATAACATCCGAGGAGTTTTG 60.164 44.000 10.57 12.70 0.00 2.44
799 1135 4.941873 GGTCAATAACATCCGAGGAGTTTT 59.058 41.667 10.57 1.70 0.00 2.43
800 1136 4.019681 TGGTCAATAACATCCGAGGAGTTT 60.020 41.667 10.57 3.69 0.00 2.66
801 1137 3.517901 TGGTCAATAACATCCGAGGAGTT 59.482 43.478 0.00 5.33 0.00 3.01
802 1138 3.104512 TGGTCAATAACATCCGAGGAGT 58.895 45.455 0.00 0.00 0.00 3.85
803 1139 3.458189 GTGGTCAATAACATCCGAGGAG 58.542 50.000 0.00 0.00 0.00 3.69
804 1140 2.169769 GGTGGTCAATAACATCCGAGGA 59.830 50.000 0.00 0.00 0.00 3.71
805 1141 2.093181 TGGTGGTCAATAACATCCGAGG 60.093 50.000 0.00 0.00 0.00 4.63
806 1142 3.260475 TGGTGGTCAATAACATCCGAG 57.740 47.619 0.00 0.00 0.00 4.63
807 1143 3.704800 TTGGTGGTCAATAACATCCGA 57.295 42.857 0.00 0.00 0.00 4.55
808 1144 4.775058 TTTTGGTGGTCAATAACATCCG 57.225 40.909 0.00 0.00 34.98 4.18
809 1145 6.128309 GCAAATTTTGGTGGTCAATAACATCC 60.128 38.462 10.96 0.00 34.98 3.51
810 1146 6.426328 TGCAAATTTTGGTGGTCAATAACATC 59.574 34.615 10.96 0.00 34.98 3.06
811 1147 6.294473 TGCAAATTTTGGTGGTCAATAACAT 58.706 32.000 10.96 0.00 34.98 2.71
812 1148 5.674525 TGCAAATTTTGGTGGTCAATAACA 58.325 33.333 10.96 0.00 34.98 2.41
813 1149 6.610741 TTGCAAATTTTGGTGGTCAATAAC 57.389 33.333 10.96 0.00 34.98 1.89
814 1150 5.238214 GCTTGCAAATTTTGGTGGTCAATAA 59.762 36.000 10.96 0.00 34.98 1.40
815 1151 4.754114 GCTTGCAAATTTTGGTGGTCAATA 59.246 37.500 10.96 0.00 34.98 1.90
816 1152 3.565063 GCTTGCAAATTTTGGTGGTCAAT 59.435 39.130 10.96 0.00 34.98 2.57
817 1153 2.941720 GCTTGCAAATTTTGGTGGTCAA 59.058 40.909 10.96 5.39 0.00 3.18
818 1154 2.093288 TGCTTGCAAATTTTGGTGGTCA 60.093 40.909 10.96 0.00 0.00 4.02
819 1155 2.559440 TGCTTGCAAATTTTGGTGGTC 58.441 42.857 10.96 0.00 0.00 4.02
820 1156 2.706339 TGCTTGCAAATTTTGGTGGT 57.294 40.000 10.96 0.00 0.00 4.16
821 1157 2.485038 GGATGCTTGCAAATTTTGGTGG 59.515 45.455 10.96 0.00 0.00 4.61
822 1158 3.139850 TGGATGCTTGCAAATTTTGGTG 58.860 40.909 10.96 0.00 0.00 4.17
823 1159 3.488778 TGGATGCTTGCAAATTTTGGT 57.511 38.095 10.96 0.00 0.00 3.67
824 1160 5.411977 TGTTATGGATGCTTGCAAATTTTGG 59.588 36.000 10.96 0.00 0.00 3.28
825 1161 6.483385 TGTTATGGATGCTTGCAAATTTTG 57.517 33.333 0.00 4.72 0.00 2.44
826 1162 7.690952 AATGTTATGGATGCTTGCAAATTTT 57.309 28.000 0.00 0.00 0.00 1.82
827 1163 7.175293 ACAAATGTTATGGATGCTTGCAAATTT 59.825 29.630 0.00 0.00 0.00 1.82
828 1164 6.655848 ACAAATGTTATGGATGCTTGCAAATT 59.344 30.769 0.00 0.00 0.00 1.82
829 1165 6.174760 ACAAATGTTATGGATGCTTGCAAAT 58.825 32.000 0.00 0.00 0.00 2.32
830 1166 5.549347 ACAAATGTTATGGATGCTTGCAAA 58.451 33.333 0.00 0.00 0.00 3.68
831 1167 5.149973 ACAAATGTTATGGATGCTTGCAA 57.850 34.783 0.00 0.00 0.00 4.08
832 1168 4.804868 ACAAATGTTATGGATGCTTGCA 57.195 36.364 0.00 0.00 0.00 4.08
833 1169 5.170021 TGAACAAATGTTATGGATGCTTGC 58.830 37.500 0.00 0.00 38.56 4.01
834 1170 8.192774 ACTATGAACAAATGTTATGGATGCTTG 58.807 33.333 0.00 0.00 38.56 4.01
835 1171 8.297470 ACTATGAACAAATGTTATGGATGCTT 57.703 30.769 0.00 0.00 38.56 3.91
836 1172 7.557358 TGACTATGAACAAATGTTATGGATGCT 59.443 33.333 0.00 0.00 38.56 3.79
837 1173 7.706159 TGACTATGAACAAATGTTATGGATGC 58.294 34.615 0.00 0.00 38.56 3.91
840 1176 8.902806 GGAATGACTATGAACAAATGTTATGGA 58.097 33.333 0.00 0.00 38.56 3.41
841 1177 8.137437 GGGAATGACTATGAACAAATGTTATGG 58.863 37.037 0.00 0.00 38.56 2.74
842 1178 8.685427 TGGGAATGACTATGAACAAATGTTATG 58.315 33.333 0.00 0.00 38.56 1.90
843 1179 8.686334 GTGGGAATGACTATGAACAAATGTTAT 58.314 33.333 0.00 0.00 38.56 1.89
844 1180 7.667635 TGTGGGAATGACTATGAACAAATGTTA 59.332 33.333 0.00 0.00 38.56 2.41
845 1181 6.493115 TGTGGGAATGACTATGAACAAATGTT 59.507 34.615 0.00 0.00 41.64 2.71
846 1182 6.009589 TGTGGGAATGACTATGAACAAATGT 58.990 36.000 0.00 0.00 0.00 2.71
847 1183 6.513806 TGTGGGAATGACTATGAACAAATG 57.486 37.500 0.00 0.00 0.00 2.32
848 1184 7.233348 ACTTTGTGGGAATGACTATGAACAAAT 59.767 33.333 0.00 0.00 36.16 2.32
849 1185 6.549364 ACTTTGTGGGAATGACTATGAACAAA 59.451 34.615 0.00 0.00 35.60 2.83
850 1186 6.068010 ACTTTGTGGGAATGACTATGAACAA 58.932 36.000 0.00 0.00 0.00 2.83
851 1187 5.630121 ACTTTGTGGGAATGACTATGAACA 58.370 37.500 0.00 0.00 0.00 3.18
852 1188 6.575162 AACTTTGTGGGAATGACTATGAAC 57.425 37.500 0.00 0.00 0.00 3.18
853 1189 6.775142 TGAAACTTTGTGGGAATGACTATGAA 59.225 34.615 0.00 0.00 0.00 2.57
854 1190 6.303054 TGAAACTTTGTGGGAATGACTATGA 58.697 36.000 0.00 0.00 0.00 2.15
855 1191 6.430925 TCTGAAACTTTGTGGGAATGACTATG 59.569 38.462 0.00 0.00 0.00 2.23
856 1192 6.542821 TCTGAAACTTTGTGGGAATGACTAT 58.457 36.000 0.00 0.00 0.00 2.12
857 1193 5.935945 TCTGAAACTTTGTGGGAATGACTA 58.064 37.500 0.00 0.00 0.00 2.59
858 1194 4.792068 TCTGAAACTTTGTGGGAATGACT 58.208 39.130 0.00 0.00 0.00 3.41
859 1195 5.712152 ATCTGAAACTTTGTGGGAATGAC 57.288 39.130 0.00 0.00 0.00 3.06
860 1196 6.729690 AAATCTGAAACTTTGTGGGAATGA 57.270 33.333 0.00 0.00 0.00 2.57
861 1197 7.790823 AAAAATCTGAAACTTTGTGGGAATG 57.209 32.000 0.00 0.00 0.00 2.67
895 1231 9.309516 CACTCATGCAAGAAAATATAGCAAAAT 57.690 29.630 0.00 0.00 38.85 1.82
896 1232 8.692110 CACTCATGCAAGAAAATATAGCAAAA 57.308 30.769 0.00 0.00 38.85 2.44
914 1250 4.749323 ACCCATGGTGCACTCATG 57.251 55.556 27.76 27.76 41.04 3.07
923 1259 3.583380 AGCTGGTGCACCCATGGT 61.583 61.111 32.62 23.33 44.15 3.55
924 1260 3.066190 CAGCTGGTGCACCCATGG 61.066 66.667 32.62 19.75 44.15 3.66
925 1261 3.066190 CCAGCTGGTGCACCCATG 61.066 66.667 32.62 25.27 44.15 3.66
926 1262 4.371417 CCCAGCTGGTGCACCCAT 62.371 66.667 32.62 15.80 44.15 4.00
934 1270 1.372501 AAATCTACACCCCAGCTGGT 58.627 50.000 30.63 15.23 39.96 4.00
935 1271 2.514458 AAAATCTACACCCCAGCTGG 57.486 50.000 26.87 26.87 0.00 4.85
966 1305 8.103305 TCCTAAAGAAATCAGCTGTGAGTAAAT 58.897 33.333 14.67 0.00 35.66 1.40
973 1312 4.005650 TGCTCCTAAAGAAATCAGCTGTG 58.994 43.478 14.67 0.00 0.00 3.66
977 1316 5.635417 AAGTTGCTCCTAAAGAAATCAGC 57.365 39.130 0.00 0.00 0.00 4.26
978 1317 7.680588 GCCATAAGTTGCTCCTAAAGAAATCAG 60.681 40.741 0.00 0.00 0.00 2.90
997 1336 4.386711 TCATGAATCTCTGCAGCCATAAG 58.613 43.478 9.47 0.15 0.00 1.73
1008 1347 6.208204 CCTTTTGGTTGAGTTCATGAATCTCT 59.792 38.462 25.16 14.87 34.07 3.10
1051 1390 2.056577 GCAACAGAAGCAAGAACATGC 58.943 47.619 0.00 0.00 46.78 4.06
1052 1391 3.243301 ACAGCAACAGAAGCAAGAACATG 60.243 43.478 0.00 0.00 0.00 3.21
1068 1407 3.636300 AGCTATTTCAACACCAACAGCAA 59.364 39.130 0.00 0.00 0.00 3.91
1131 1470 3.395054 TCCATCTCATCAGACCTCACT 57.605 47.619 0.00 0.00 0.00 3.41
1132 1471 4.686191 ATTCCATCTCATCAGACCTCAC 57.314 45.455 0.00 0.00 0.00 3.51
1139 1478 6.150318 GCAAAAGCATATTCCATCTCATCAG 58.850 40.000 0.00 0.00 0.00 2.90
1154 1493 2.633967 TGTGAAATCCCTGCAAAAGCAT 59.366 40.909 0.00 0.00 0.00 3.79
1173 1512 9.533253 CAAGTTCTACATTTTCCTTTTGAATGT 57.467 29.630 6.26 6.26 43.93 2.71
1174 1513 8.981647 CCAAGTTCTACATTTTCCTTTTGAATG 58.018 33.333 0.00 0.00 36.95 2.67
1180 1519 6.478512 TTGCCAAGTTCTACATTTTCCTTT 57.521 33.333 0.00 0.00 0.00 3.11
1231 1570 3.517100 TCACCTTCTTCTGCAGCTCTATT 59.483 43.478 9.47 0.00 0.00 1.73
1252 1591 3.272574 TGAGAATCCATGGCACTTCTC 57.727 47.619 27.61 27.61 42.44 2.87
1283 1622 7.540474 TTAGCTACTAGCATACCTAGCATTT 57.460 36.000 10.73 0.00 46.17 2.32
1352 1733 5.670792 AGCATGTGGTTCATCAATGATTT 57.329 34.783 0.00 0.00 36.56 2.17
1376 1762 5.571784 ATGACTTGCTAATGGATGTGTTG 57.428 39.130 0.00 0.00 0.00 3.33
1381 1767 5.525012 TCTTTCGATGACTTGCTAATGGATG 59.475 40.000 0.00 0.00 0.00 3.51
1384 1770 4.631377 TGTCTTTCGATGACTTGCTAATGG 59.369 41.667 16.47 0.00 35.63 3.16
1425 1841 9.573166 TCAAATTTGTCTCTCCTTTTTCAGATA 57.427 29.630 17.47 0.00 0.00 1.98
1437 1853 8.729805 ATACTGATCCTTCAAATTTGTCTCTC 57.270 34.615 17.47 9.85 0.00 3.20
1484 1928 5.106317 GCGAAGTCTTGAATAAAATCCACCA 60.106 40.000 0.00 0.00 0.00 4.17
1522 1966 5.234972 TGAATCTGCGTTAGACATGCTAATG 59.765 40.000 17.65 17.65 45.08 1.90
1579 2218 6.033831 CGCATTTCTATTTTGTCCAACACATC 59.966 38.462 0.00 0.00 33.90 3.06
1594 2236 1.832883 TGGTTGCACCGCATTTCTAT 58.167 45.000 0.00 0.00 42.58 1.98
1605 2247 9.255304 TCTTTTTCTAAAATTATGTGGTTGCAC 57.745 29.630 0.00 0.00 0.00 4.57
1624 2270 6.366061 GCAACCAGTTCCAACATATCTTTTTC 59.634 38.462 0.00 0.00 0.00 2.29
1630 2277 4.782019 TTGCAACCAGTTCCAACATATC 57.218 40.909 0.00 0.00 0.00 1.63
1633 2280 4.420522 AATTTGCAACCAGTTCCAACAT 57.579 36.364 0.00 0.00 0.00 2.71
1661 2308 9.533831 TGATGGATGTTATATCAGCTAGAACTA 57.466 33.333 0.00 0.00 33.57 2.24
1716 2418 3.843027 CAGGTATCAGCTCCCTTCCATAT 59.157 47.826 0.00 0.00 0.00 1.78
1717 2419 3.116746 TCAGGTATCAGCTCCCTTCCATA 60.117 47.826 0.00 0.00 0.00 2.74
1726 2428 5.948992 AAAAGTTTGTCAGGTATCAGCTC 57.051 39.130 0.00 0.00 0.00 4.09
1753 2455 6.320418 CCCCGGAAAGCTAATTAATTAACACT 59.680 38.462 0.73 4.73 0.00 3.55
1764 2466 0.535102 CATCGCCCCGGAAAGCTAAT 60.535 55.000 0.73 0.00 0.00 1.73
1765 2467 1.153249 CATCGCCCCGGAAAGCTAA 60.153 57.895 0.73 0.00 0.00 3.09
1766 2468 2.028125 CTCATCGCCCCGGAAAGCTA 62.028 60.000 0.73 0.00 0.00 3.32
1767 2469 3.391665 CTCATCGCCCCGGAAAGCT 62.392 63.158 0.73 0.00 0.00 3.74
1780 2482 0.599728 GCTGCCCACTCGATCTCATC 60.600 60.000 0.00 0.00 0.00 2.92
1920 2622 3.171987 CTGCATGCAGTGGACGAC 58.828 61.111 34.76 0.00 39.10 4.34
2003 2711 9.309516 AGCATGAATTTAGAAATGTAATTGCAG 57.690 29.630 1.90 0.00 36.10 4.41
2004 2712 9.656040 AAGCATGAATTTAGAAATGTAATTGCA 57.344 25.926 0.00 0.00 36.10 4.08
2028 2742 3.983344 GCTGTCTGGTGCAAAACAATAAG 59.017 43.478 0.00 0.00 0.00 1.73
2062 2784 0.726827 CGTCCACGCATGCACTAATT 59.273 50.000 19.57 0.00 0.00 1.40
2063 2785 0.108377 TCGTCCACGCATGCACTAAT 60.108 50.000 19.57 0.00 39.60 1.73
2065 2787 0.527600 GATCGTCCACGCATGCACTA 60.528 55.000 19.57 0.15 39.60 2.74
2108 2830 6.491745 TCAAAATTGTTTCTACATACCAGGCA 59.508 34.615 0.00 0.00 33.44 4.75
2162 2885 5.596836 ATGTCTGTGACAACACCAAAAAT 57.403 34.783 4.46 0.00 45.96 1.82
2188 2911 4.248859 ACTACATCTGTTGCTGCTACTTG 58.751 43.478 14.81 11.66 0.00 3.16
2190 2913 5.127845 ACATACTACATCTGTTGCTGCTACT 59.872 40.000 14.81 0.00 0.00 2.57
2191 2914 5.352284 ACATACTACATCTGTTGCTGCTAC 58.648 41.667 7.29 7.29 0.00 3.58
2200 2923 9.628500 TTAGACTCACATACATACTACATCTGT 57.372 33.333 0.00 0.00 0.00 3.41
2333 3067 7.889589 AAACACAAAAGCTCATTAATTAGGC 57.110 32.000 0.00 0.00 0.00 3.93
2350 3084 0.684805 AGGTTCCCCGCAAAACACAA 60.685 50.000 0.00 0.00 35.12 3.33
2354 3088 4.787260 TTAATTAGGTTCCCCGCAAAAC 57.213 40.909 0.00 0.00 35.12 2.43
2362 3104 8.734386 CATATTCAGCTCATTAATTAGGTTCCC 58.266 37.037 0.00 0.00 0.00 3.97
2389 3132 9.257651 GACTCACAATAAACACTTAGTAGTTGT 57.742 33.333 2.12 0.00 32.73 3.32
2392 3135 8.088981 CCTGACTCACAATAAACACTTAGTAGT 58.911 37.037 0.00 0.00 34.00 2.73
2402 3146 5.220605 GCCGATAACCTGACTCACAATAAAC 60.221 44.000 0.00 0.00 0.00 2.01
2406 3150 2.420129 GGCCGATAACCTGACTCACAAT 60.420 50.000 0.00 0.00 0.00 2.71
2418 3162 4.666928 TTTCTGTAAAACGGCCGATAAC 57.333 40.909 35.90 21.79 0.00 1.89
2445 3190 1.270550 CACCATGACCTCCAAAGTTGC 59.729 52.381 0.00 0.00 0.00 4.17
2521 3266 3.753272 GCTGATGTCAAACTCTAGGCAAA 59.247 43.478 0.00 0.00 0.00 3.68
2522 3267 3.244526 TGCTGATGTCAAACTCTAGGCAA 60.245 43.478 0.00 0.00 0.00 4.52
2523 3268 2.302733 TGCTGATGTCAAACTCTAGGCA 59.697 45.455 0.00 0.00 0.00 4.75
2524 3269 2.935201 CTGCTGATGTCAAACTCTAGGC 59.065 50.000 0.00 0.00 0.00 3.93
2525 3270 4.081752 AGACTGCTGATGTCAAACTCTAGG 60.082 45.833 0.00 0.00 36.94 3.02
2526 3271 5.070770 AGACTGCTGATGTCAAACTCTAG 57.929 43.478 0.00 0.00 36.94 2.43
2527 3272 5.393569 GCTAGACTGCTGATGTCAAACTCTA 60.394 44.000 0.00 0.00 36.94 2.43
2528 3273 4.620332 GCTAGACTGCTGATGTCAAACTCT 60.620 45.833 0.00 0.00 36.94 3.24
2529 3274 3.616379 GCTAGACTGCTGATGTCAAACTC 59.384 47.826 0.00 0.00 36.94 3.01
2530 3275 3.594134 GCTAGACTGCTGATGTCAAACT 58.406 45.455 0.00 0.00 36.94 2.66
2531 3276 2.675348 GGCTAGACTGCTGATGTCAAAC 59.325 50.000 0.00 0.00 36.94 2.93
2534 3279 1.560505 TGGCTAGACTGCTGATGTCA 58.439 50.000 0.00 0.00 36.94 3.58
2536 3281 1.065854 GGTTGGCTAGACTGCTGATGT 60.066 52.381 0.00 0.00 0.00 3.06
2539 3284 0.545309 AGGGTTGGCTAGACTGCTGA 60.545 55.000 0.00 0.00 0.00 4.26
2547 3292 3.257624 CGTAATAGGGTAGGGTTGGCTAG 59.742 52.174 0.00 0.00 0.00 3.42
2571 3358 4.607293 AAAAGAAGGGCTTGTGGAATTC 57.393 40.909 0.00 0.00 36.80 2.17
2599 3386 4.751060 TCAATTGTGACCCACGATACTAC 58.249 43.478 5.13 0.00 37.48 2.73
2606 3393 0.880441 TGCATCAATTGTGACCCACG 59.120 50.000 5.13 0.00 36.31 4.94
2608 3395 3.229293 TCTTTGCATCAATTGTGACCCA 58.771 40.909 5.13 0.00 36.31 4.51
2611 3914 7.410800 TCATTTTCTTTGCATCAATTGTGAC 57.589 32.000 5.13 0.00 36.31 3.67
2698 4014 8.148351 CCGTAAGATTTCATAGAGTGGGAATTA 58.852 37.037 0.00 0.00 43.02 1.40
2703 4019 5.531122 TCCGTAAGATTTCATAGAGTGGG 57.469 43.478 0.00 0.00 43.02 4.61
2833 4176 2.649129 GCTTCATGTTGGGGTGGGC 61.649 63.158 0.00 0.00 0.00 5.36
2855 4198 6.093495 GGAAATGTATGAGTCGTTTTCCATGA 59.907 38.462 16.99 0.00 0.00 3.07
2859 4202 5.873179 TGGAAATGTATGAGTCGTTTTCC 57.127 39.130 15.74 15.74 0.00 3.13
2865 4208 6.090483 AGTAGGATGGAAATGTATGAGTCG 57.910 41.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.