Multiple sequence alignment - TraesCS7D01G105100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G105100 chr7D 100.000 6757 0 0 1 6757 63730053 63736809 0.000000e+00 12478
1 TraesCS7D01G105100 chr7A 93.373 6489 220 56 438 6757 66711076 66717523 0.000000e+00 9407
2 TraesCS7D01G105100 chr7B 91.930 6555 254 99 422 6757 4311864 4318362 0.000000e+00 8920
3 TraesCS7D01G105100 chr7B 82.560 625 69 26 5438 6055 4323207 4323798 1.300000e-141 514
4 TraesCS7D01G105100 chr7B 88.542 96 11 0 6132 6227 329852306 329852211 4.280000e-22 117
5 TraesCS7D01G105100 chr1A 87.745 204 23 2 3678 3880 557972508 557972306 3.150000e-58 237
6 TraesCS7D01G105100 chr3B 91.925 161 12 1 6068 6227 749864703 749864863 2.450000e-54 224
7 TraesCS7D01G105100 chr1B 91.176 102 8 1 6076 6177 670294501 670294601 3.290000e-28 137
8 TraesCS7D01G105100 chr6B 88.235 102 10 1 6132 6231 684417781 684417882 3.310000e-23 121
9 TraesCS7D01G105100 chr2A 91.667 72 4 2 6102 6173 38508519 38508450 1.550000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G105100 chr7D 63730053 63736809 6756 False 12478 12478 100.000 1 6757 1 chr7D.!!$F1 6756
1 TraesCS7D01G105100 chr7A 66711076 66717523 6447 False 9407 9407 93.373 438 6757 1 chr7A.!!$F1 6319
2 TraesCS7D01G105100 chr7B 4311864 4318362 6498 False 8920 8920 91.930 422 6757 1 chr7B.!!$F1 6335
3 TraesCS7D01G105100 chr7B 4323207 4323798 591 False 514 514 82.560 5438 6055 1 chr7B.!!$F2 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.027586 CGAAATCGGGCGGAAATGTC 59.972 55.000 0.00 0.00 35.37 3.06 F
204 205 0.030638 CTATTCGGGCCGGCAAATTG 59.969 55.000 30.85 19.64 0.00 2.32 F
364 365 0.033366 TGTATGGATCGGATGCGTGG 59.967 55.000 13.71 0.00 0.00 4.94 F
369 370 0.034059 GGATCGGATGCGTGGAGATT 59.966 55.000 6.49 0.00 0.00 2.40 F
420 421 0.036306 GGCCGATCGGGTTGGAATAT 59.964 55.000 33.98 0.00 38.44 1.28 F
1993 2114 0.038021 TGCTGTGCCATGGCTTTCTA 59.962 50.000 35.53 14.23 42.51 2.10 F
2344 2523 0.034574 AATCATGCCCGCACCACTTA 60.035 50.000 0.00 0.00 0.00 2.24 F
3533 3730 2.467826 GCGCACTTCCATGCCTCTC 61.468 63.158 0.30 0.00 42.99 3.20 F
3630 3853 2.750166 GGTTTAGCTCCTTTTCTCCAGC 59.250 50.000 0.00 0.00 0.00 4.85 F
5364 5670 2.093816 TCATCTTCTACAGTGCTGCCTG 60.094 50.000 14.07 14.07 38.45 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1769 0.035630 ACAGAGAGCCATGGAGCAAC 60.036 55.000 18.40 0.00 34.23 4.17 R
1678 1787 0.108945 GGCCAGAAGCATGAGCAAAC 60.109 55.000 0.00 0.00 46.50 2.93 R
2234 2395 0.249405 AACACAGTTTTGGCCATGCG 60.249 50.000 6.09 0.00 0.00 4.73 R
2314 2493 2.160219 CGGGCATGATTATTCACCATCG 59.840 50.000 0.00 0.00 33.85 3.84 R
2332 2511 5.120399 TGTTATAGAATTAAGTGGTGCGGG 58.880 41.667 0.00 0.00 0.00 6.13 R
2967 3151 4.629065 CGAGACAATCAAGTCGCTAAAAC 58.371 43.478 0.00 0.00 43.24 2.43 R
4130 4386 2.619931 TCACTCCAAGGATCCAACAGA 58.380 47.619 15.82 4.09 0.00 3.41 R
5125 5383 1.909141 CTTGCCTCAGCTCAGTTGCG 61.909 60.000 0.00 0.00 40.80 4.85 R
5474 5780 2.228545 TGGCATGGGCTAAACAATGA 57.771 45.000 0.00 0.00 40.87 2.57 R
6508 6828 0.033366 GGGAACGGCACAAAAATGCT 59.967 50.000 0.00 0.00 45.38 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.647615 CGATAGGGAGGTGCGGCG 62.648 72.222 0.51 0.51 0.00 6.46
18 19 4.301027 GATAGGGAGGTGCGGCGG 62.301 72.222 9.78 0.00 0.00 6.13
46 47 4.735358 GGGAAGTGGGGCGGGAAC 62.735 72.222 0.00 0.00 0.00 3.62
58 59 3.199891 GGGAACGAAATCGGGCGG 61.200 66.667 7.81 0.00 44.95 6.13
59 60 2.125431 GGAACGAAATCGGGCGGA 60.125 61.111 7.81 0.00 44.95 5.54
60 61 1.742510 GGAACGAAATCGGGCGGAA 60.743 57.895 7.81 0.00 44.95 4.30
61 62 1.300266 GGAACGAAATCGGGCGGAAA 61.300 55.000 7.81 0.00 44.95 3.13
62 63 0.730840 GAACGAAATCGGGCGGAAAT 59.269 50.000 7.81 0.00 44.95 2.17
63 64 0.450184 AACGAAATCGGGCGGAAATG 59.550 50.000 7.81 0.00 44.95 2.32
64 65 0.675522 ACGAAATCGGGCGGAAATGT 60.676 50.000 7.81 0.00 44.95 2.71
65 66 0.027586 CGAAATCGGGCGGAAATGTC 59.972 55.000 0.00 0.00 35.37 3.06
66 67 0.380733 GAAATCGGGCGGAAATGTCC 59.619 55.000 0.00 0.00 41.01 4.02
67 68 0.034477 AAATCGGGCGGAAATGTCCT 60.034 50.000 0.00 0.00 42.44 3.85
68 69 0.034477 AATCGGGCGGAAATGTCCTT 60.034 50.000 0.00 0.00 42.44 3.36
69 70 0.463833 ATCGGGCGGAAATGTCCTTC 60.464 55.000 0.00 0.00 42.44 3.46
70 71 2.461110 CGGGCGGAAATGTCCTTCG 61.461 63.158 0.00 0.00 42.44 3.79
71 72 1.376812 GGGCGGAAATGTCCTTCGT 60.377 57.895 0.00 0.00 42.44 3.85
72 73 1.644786 GGGCGGAAATGTCCTTCGTG 61.645 60.000 0.00 0.00 42.44 4.35
73 74 1.134694 GCGGAAATGTCCTTCGTGC 59.865 57.895 0.00 0.00 42.44 5.34
74 75 1.794222 CGGAAATGTCCTTCGTGCC 59.206 57.895 0.00 0.00 42.44 5.01
75 76 0.953471 CGGAAATGTCCTTCGTGCCA 60.953 55.000 0.00 0.00 42.44 4.92
76 77 1.243902 GGAAATGTCCTTCGTGCCAA 58.756 50.000 0.00 0.00 41.24 4.52
77 78 1.200020 GGAAATGTCCTTCGTGCCAAG 59.800 52.381 0.00 0.00 41.24 3.61
78 79 1.200020 GAAATGTCCTTCGTGCCAAGG 59.800 52.381 0.61 0.61 44.09 3.61
79 80 0.609131 AATGTCCTTCGTGCCAAGGG 60.609 55.000 6.40 0.00 43.07 3.95
80 81 1.488705 ATGTCCTTCGTGCCAAGGGA 61.489 55.000 6.40 0.00 43.07 4.20
81 82 1.072505 GTCCTTCGTGCCAAGGGAA 59.927 57.895 6.40 0.00 43.07 3.97
82 83 0.536460 GTCCTTCGTGCCAAGGGAAA 60.536 55.000 6.40 0.00 43.07 3.13
83 84 0.250727 TCCTTCGTGCCAAGGGAAAG 60.251 55.000 6.40 0.00 43.07 2.62
84 85 1.244019 CCTTCGTGCCAAGGGAAAGG 61.244 60.000 0.00 0.00 39.60 3.11
85 86 1.228429 TTCGTGCCAAGGGAAAGGG 60.228 57.895 0.00 0.00 0.00 3.95
89 90 2.363018 GCCAAGGGAAAGGGCTCC 60.363 66.667 0.00 0.00 44.32 4.70
90 91 2.044946 CCAAGGGAAAGGGCTCCG 60.045 66.667 0.00 0.00 36.21 4.63
91 92 2.044946 CAAGGGAAAGGGCTCCGG 60.045 66.667 0.00 0.00 36.21 5.14
92 93 4.048470 AAGGGAAAGGGCTCCGGC 62.048 66.667 0.00 0.00 36.21 6.13
94 95 4.360405 GGGAAAGGGCTCCGGCAA 62.360 66.667 0.00 0.00 40.87 4.52
95 96 2.282887 GGAAAGGGCTCCGGCAAA 60.283 61.111 0.00 0.00 40.87 3.68
96 97 1.906333 GGAAAGGGCTCCGGCAAAA 60.906 57.895 0.00 0.00 40.87 2.44
97 98 1.289066 GAAAGGGCTCCGGCAAAAC 59.711 57.895 0.00 0.00 40.87 2.43
98 99 1.456705 AAAGGGCTCCGGCAAAACA 60.457 52.632 0.00 0.00 40.87 2.83
99 100 1.045911 AAAGGGCTCCGGCAAAACAA 61.046 50.000 0.00 0.00 40.87 2.83
100 101 1.463553 AAGGGCTCCGGCAAAACAAG 61.464 55.000 0.00 0.00 40.87 3.16
101 102 2.049156 GGCTCCGGCAAAACAAGC 60.049 61.111 0.00 0.00 40.87 4.01
114 115 5.713025 GCAAAACAAGCCAATTCTCATAGA 58.287 37.500 0.00 0.00 0.00 1.98
115 116 6.335777 GCAAAACAAGCCAATTCTCATAGAT 58.664 36.000 0.00 0.00 0.00 1.98
116 117 7.483307 GCAAAACAAGCCAATTCTCATAGATA 58.517 34.615 0.00 0.00 0.00 1.98
117 118 8.139989 GCAAAACAAGCCAATTCTCATAGATAT 58.860 33.333 0.00 0.00 0.00 1.63
118 119 9.459640 CAAAACAAGCCAATTCTCATAGATATG 57.540 33.333 0.00 0.00 35.04 1.78
119 120 7.756395 AACAAGCCAATTCTCATAGATATGG 57.244 36.000 0.19 0.00 34.97 2.74
120 121 6.845908 ACAAGCCAATTCTCATAGATATGGT 58.154 36.000 0.19 0.00 34.58 3.55
121 122 6.713903 ACAAGCCAATTCTCATAGATATGGTG 59.286 38.462 0.19 4.92 34.58 4.17
122 123 6.692849 AGCCAATTCTCATAGATATGGTGA 57.307 37.500 0.19 0.00 34.58 4.02
123 124 7.083062 AGCCAATTCTCATAGATATGGTGAA 57.917 36.000 0.19 6.02 34.58 3.18
124 125 7.520798 AGCCAATTCTCATAGATATGGTGAAA 58.479 34.615 10.72 0.00 34.58 2.69
125 126 8.000709 AGCCAATTCTCATAGATATGGTGAAAA 58.999 33.333 10.72 0.00 34.58 2.29
126 127 8.800332 GCCAATTCTCATAGATATGGTGAAAAT 58.200 33.333 10.72 4.38 34.58 1.82
130 131 9.872684 ATTCTCATAGATATGGTGAAAATTGGT 57.127 29.630 10.72 0.00 33.76 3.67
131 132 8.908786 TCTCATAGATATGGTGAAAATTGGTC 57.091 34.615 0.19 0.00 34.50 4.02
132 133 7.657354 TCTCATAGATATGGTGAAAATTGGTCG 59.343 37.037 0.19 0.00 34.50 4.79
133 134 7.279615 TCATAGATATGGTGAAAATTGGTCGT 58.720 34.615 0.19 0.00 34.50 4.34
134 135 5.818136 AGATATGGTGAAAATTGGTCGTG 57.182 39.130 0.00 0.00 0.00 4.35
135 136 4.640201 AGATATGGTGAAAATTGGTCGTGG 59.360 41.667 0.00 0.00 0.00 4.94
136 137 2.060050 TGGTGAAAATTGGTCGTGGT 57.940 45.000 0.00 0.00 0.00 4.16
137 138 2.379972 TGGTGAAAATTGGTCGTGGTT 58.620 42.857 0.00 0.00 0.00 3.67
138 139 2.761208 TGGTGAAAATTGGTCGTGGTTT 59.239 40.909 0.00 0.00 0.00 3.27
139 140 3.120041 GGTGAAAATTGGTCGTGGTTTG 58.880 45.455 0.00 0.00 0.00 2.93
140 141 2.538037 GTGAAAATTGGTCGTGGTTTGC 59.462 45.455 0.00 0.00 0.00 3.68
141 142 2.166459 TGAAAATTGGTCGTGGTTTGCA 59.834 40.909 0.00 0.00 0.00 4.08
142 143 2.969628 AAATTGGTCGTGGTTTGCAA 57.030 40.000 0.00 0.00 0.00 4.08
143 144 2.507339 AATTGGTCGTGGTTTGCAAG 57.493 45.000 0.00 0.00 0.00 4.01
144 145 1.686355 ATTGGTCGTGGTTTGCAAGA 58.314 45.000 0.00 0.00 0.00 3.02
145 146 1.686355 TTGGTCGTGGTTTGCAAGAT 58.314 45.000 0.00 0.00 0.00 2.40
146 147 1.234821 TGGTCGTGGTTTGCAAGATC 58.765 50.000 0.00 0.00 0.00 2.75
147 148 0.521735 GGTCGTGGTTTGCAAGATCC 59.478 55.000 0.00 4.90 0.00 3.36
148 149 0.521735 GTCGTGGTTTGCAAGATCCC 59.478 55.000 0.00 0.00 0.00 3.85
149 150 0.953471 TCGTGGTTTGCAAGATCCCG 60.953 55.000 0.00 9.71 0.00 5.14
150 151 1.234615 CGTGGTTTGCAAGATCCCGT 61.235 55.000 0.00 0.00 0.00 5.28
151 152 1.816074 GTGGTTTGCAAGATCCCGTA 58.184 50.000 0.00 0.00 0.00 4.02
152 153 2.156098 GTGGTTTGCAAGATCCCGTAA 58.844 47.619 0.00 0.00 0.00 3.18
153 154 2.554893 GTGGTTTGCAAGATCCCGTAAA 59.445 45.455 0.00 0.00 0.00 2.01
154 155 3.004944 GTGGTTTGCAAGATCCCGTAAAA 59.995 43.478 0.00 0.00 0.00 1.52
155 156 3.004944 TGGTTTGCAAGATCCCGTAAAAC 59.995 43.478 0.00 4.30 0.00 2.43
156 157 3.004944 GGTTTGCAAGATCCCGTAAAACA 59.995 43.478 0.00 0.00 0.00 2.83
157 158 4.500035 GGTTTGCAAGATCCCGTAAAACAA 60.500 41.667 0.00 0.00 0.00 2.83
158 159 4.920640 TTGCAAGATCCCGTAAAACAAA 57.079 36.364 0.00 0.00 0.00 2.83
159 160 4.920640 TGCAAGATCCCGTAAAACAAAA 57.079 36.364 0.00 0.00 0.00 2.44
160 161 5.461032 TGCAAGATCCCGTAAAACAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
161 162 5.465935 TGCAAGATCCCGTAAAACAAAATC 58.534 37.500 0.00 0.00 0.00 2.17
162 163 5.242838 TGCAAGATCCCGTAAAACAAAATCT 59.757 36.000 0.00 0.00 0.00 2.40
163 164 5.572896 GCAAGATCCCGTAAAACAAAATCTG 59.427 40.000 0.00 0.00 0.00 2.90
164 165 6.569610 GCAAGATCCCGTAAAACAAAATCTGA 60.570 38.462 0.00 0.00 0.00 3.27
165 166 6.743575 AGATCCCGTAAAACAAAATCTGAG 57.256 37.500 0.00 0.00 0.00 3.35
166 167 6.472887 AGATCCCGTAAAACAAAATCTGAGA 58.527 36.000 0.00 0.00 0.00 3.27
167 168 5.934935 TCCCGTAAAACAAAATCTGAGAC 57.065 39.130 0.00 0.00 0.00 3.36
168 169 4.449743 TCCCGTAAAACAAAATCTGAGACG 59.550 41.667 0.00 0.00 0.00 4.18
169 170 4.449743 CCCGTAAAACAAAATCTGAGACGA 59.550 41.667 0.00 0.00 0.00 4.20
170 171 5.121768 CCCGTAAAACAAAATCTGAGACGAT 59.878 40.000 0.00 0.00 0.00 3.73
171 172 6.241385 CCGTAAAACAAAATCTGAGACGATC 58.759 40.000 0.00 0.00 0.00 3.69
172 173 5.946389 CGTAAAACAAAATCTGAGACGATCG 59.054 40.000 14.88 14.88 0.00 3.69
173 174 6.183359 CGTAAAACAAAATCTGAGACGATCGA 60.183 38.462 24.34 0.00 0.00 3.59
174 175 6.539649 AAAACAAAATCTGAGACGATCGAA 57.460 33.333 24.34 3.25 0.00 3.71
175 176 6.727824 AAACAAAATCTGAGACGATCGAAT 57.272 33.333 24.34 9.51 0.00 3.34
176 177 7.827819 AAACAAAATCTGAGACGATCGAATA 57.172 32.000 24.34 4.08 0.00 1.75
177 178 8.425577 AAACAAAATCTGAGACGATCGAATAT 57.574 30.769 24.34 0.00 0.00 1.28
178 179 9.529325 AAACAAAATCTGAGACGATCGAATATA 57.471 29.630 24.34 2.64 0.00 0.86
179 180 8.735303 ACAAAATCTGAGACGATCGAATATAG 57.265 34.615 24.34 12.64 0.00 1.31
180 181 7.810282 ACAAAATCTGAGACGATCGAATATAGG 59.190 37.037 24.34 5.61 0.00 2.57
181 182 6.443934 AATCTGAGACGATCGAATATAGGG 57.556 41.667 24.34 4.15 0.00 3.53
182 183 4.262617 TCTGAGACGATCGAATATAGGGG 58.737 47.826 24.34 2.83 0.00 4.79
183 184 4.019591 TCTGAGACGATCGAATATAGGGGA 60.020 45.833 24.34 5.11 0.00 4.81
184 185 4.856509 TGAGACGATCGAATATAGGGGAT 58.143 43.478 24.34 0.00 0.00 3.85
185 186 4.882427 TGAGACGATCGAATATAGGGGATC 59.118 45.833 24.34 3.86 33.61 3.36
186 187 5.118729 AGACGATCGAATATAGGGGATCT 57.881 43.478 24.34 6.37 34.54 2.75
187 188 6.126854 TGAGACGATCGAATATAGGGGATCTA 60.127 42.308 24.34 0.00 34.54 1.98
188 189 6.843752 AGACGATCGAATATAGGGGATCTAT 58.156 40.000 24.34 0.00 41.31 1.98
189 190 7.291566 AGACGATCGAATATAGGGGATCTATT 58.708 38.462 24.34 0.00 39.30 1.73
190 191 7.446013 AGACGATCGAATATAGGGGATCTATTC 59.554 40.741 24.34 1.68 39.30 1.75
193 194 5.455056 CGAATATAGGGGATCTATTCGGG 57.545 47.826 18.98 1.50 45.09 5.14
194 195 4.262079 CGAATATAGGGGATCTATTCGGGC 60.262 50.000 18.98 0.00 45.09 6.13
195 196 1.880941 ATAGGGGATCTATTCGGGCC 58.119 55.000 0.00 0.00 35.22 5.80
196 197 0.613853 TAGGGGATCTATTCGGGCCG 60.614 60.000 22.51 22.51 0.00 6.13
197 198 2.663196 GGGATCTATTCGGGCCGG 59.337 66.667 27.98 10.15 0.00 6.13
198 199 2.047179 GGATCTATTCGGGCCGGC 60.047 66.667 27.98 21.18 0.00 6.13
199 200 2.741092 GATCTATTCGGGCCGGCA 59.259 61.111 30.85 14.06 0.00 5.69
200 201 1.070786 GATCTATTCGGGCCGGCAA 59.929 57.895 30.85 15.20 0.00 4.52
201 202 0.534203 GATCTATTCGGGCCGGCAAA 60.534 55.000 30.85 19.32 0.00 3.68
202 203 0.110486 ATCTATTCGGGCCGGCAAAT 59.890 50.000 30.85 24.44 0.00 2.32
203 204 0.106918 TCTATTCGGGCCGGCAAATT 60.107 50.000 30.85 11.09 0.00 1.82
204 205 0.030638 CTATTCGGGCCGGCAAATTG 59.969 55.000 30.85 19.64 0.00 2.32
205 206 1.388065 TATTCGGGCCGGCAAATTGG 61.388 55.000 30.85 9.99 0.00 3.16
206 207 4.669809 TCGGGCCGGCAAATTGGT 62.670 61.111 30.85 0.00 0.00 3.67
207 208 4.433877 CGGGCCGGCAAATTGGTG 62.434 66.667 30.85 3.84 0.00 4.17
208 209 2.994417 GGGCCGGCAAATTGGTGA 60.994 61.111 30.85 0.00 0.00 4.02
209 210 2.573340 GGCCGGCAAATTGGTGAG 59.427 61.111 30.85 0.00 0.00 3.51
210 211 2.275380 GGCCGGCAAATTGGTGAGT 61.275 57.895 30.85 0.00 0.00 3.41
211 212 1.212751 GCCGGCAAATTGGTGAGTC 59.787 57.895 24.80 0.00 0.00 3.36
212 213 1.883021 CCGGCAAATTGGTGAGTCC 59.117 57.895 0.00 0.00 0.00 3.85
213 214 0.893270 CCGGCAAATTGGTGAGTCCA 60.893 55.000 0.00 0.00 45.60 4.02
222 223 1.127343 TGGTGAGTCCACACATGACA 58.873 50.000 0.00 0.00 44.93 3.58
223 224 1.488393 TGGTGAGTCCACACATGACAA 59.512 47.619 0.00 0.00 44.93 3.18
224 225 2.092699 TGGTGAGTCCACACATGACAAA 60.093 45.455 0.00 0.00 44.93 2.83
225 226 2.948979 GGTGAGTCCACACATGACAAAA 59.051 45.455 0.00 0.00 44.93 2.44
226 227 3.569701 GGTGAGTCCACACATGACAAAAT 59.430 43.478 0.00 0.00 44.93 1.82
227 228 4.037923 GGTGAGTCCACACATGACAAAATT 59.962 41.667 0.00 0.00 44.93 1.82
228 229 4.977963 GTGAGTCCACACATGACAAAATTG 59.022 41.667 0.00 0.00 42.72 2.32
229 230 4.644234 TGAGTCCACACATGACAAAATTGT 59.356 37.500 0.00 0.00 45.65 2.71
230 231 5.126869 TGAGTCCACACATGACAAAATTGTT 59.873 36.000 0.00 0.00 42.43 2.83
231 232 5.350633 AGTCCACACATGACAAAATTGTTG 58.649 37.500 0.00 0.00 42.43 3.33
232 233 4.025813 GTCCACACATGACAAAATTGTTGC 60.026 41.667 0.00 0.00 42.43 4.17
233 234 3.060406 CCACACATGACAAAATTGTTGCG 60.060 43.478 0.00 0.00 42.43 4.85
234 235 2.539274 ACACATGACAAAATTGTTGCGC 59.461 40.909 0.00 0.00 42.43 6.09
235 236 1.786004 ACATGACAAAATTGTTGCGCG 59.214 42.857 0.00 0.00 42.43 6.86
236 237 1.786004 CATGACAAAATTGTTGCGCGT 59.214 42.857 8.43 0.00 42.43 6.01
237 238 2.757686 TGACAAAATTGTTGCGCGTA 57.242 40.000 8.43 0.00 42.43 4.42
238 239 2.376956 TGACAAAATTGTTGCGCGTAC 58.623 42.857 8.43 7.30 42.43 3.67
239 240 1.377505 GACAAAATTGTTGCGCGTACG 59.622 47.619 11.84 11.84 42.43 3.67
240 241 0.700226 CAAAATTGTTGCGCGTACGG 59.300 50.000 18.39 8.37 40.57 4.02
241 242 0.386226 AAAATTGTTGCGCGTACGGG 60.386 50.000 26.20 26.20 40.57 5.28
242 243 2.190101 AAATTGTTGCGCGTACGGGG 62.190 55.000 30.12 14.43 40.57 5.73
243 244 3.887335 ATTGTTGCGCGTACGGGGT 62.887 57.895 30.12 0.00 40.57 4.95
244 245 4.605634 TGTTGCGCGTACGGGGTT 62.606 61.111 30.12 0.00 40.57 4.11
245 246 3.348205 GTTGCGCGTACGGGGTTT 61.348 61.111 30.12 0.00 40.57 3.27
246 247 3.347405 TTGCGCGTACGGGGTTTG 61.347 61.111 30.12 0.00 40.57 2.93
247 248 4.605634 TGCGCGTACGGGGTTTGT 62.606 61.111 30.12 0.00 40.57 2.83
248 249 3.781162 GCGCGTACGGGGTTTGTC 61.781 66.667 30.12 11.42 40.57 3.18
249 250 3.472298 CGCGTACGGGGTTTGTCG 61.472 66.667 23.33 8.72 34.97 4.35
250 251 2.049248 GCGTACGGGGTTTGTCGA 60.049 61.111 18.39 0.00 0.00 4.20
251 252 2.090524 GCGTACGGGGTTTGTCGAG 61.091 63.158 18.39 0.00 0.00 4.04
252 253 2.090524 CGTACGGGGTTTGTCGAGC 61.091 63.158 7.57 0.00 0.00 5.03
253 254 1.739196 GTACGGGGTTTGTCGAGCC 60.739 63.158 0.00 0.00 36.46 4.70
260 261 2.064573 GGTTTGTCGAGCCCAAATTG 57.935 50.000 3.37 0.00 34.59 2.32
261 262 1.336795 GGTTTGTCGAGCCCAAATTGG 60.337 52.381 4.74 4.74 34.59 3.16
262 263 1.339929 GTTTGTCGAGCCCAAATTGGT 59.660 47.619 11.52 0.00 35.17 3.67
263 264 0.958091 TTGTCGAGCCCAAATTGGTG 59.042 50.000 11.52 3.82 35.17 4.17
264 265 0.109532 TGTCGAGCCCAAATTGGTGA 59.890 50.000 11.52 0.63 35.17 4.02
265 266 0.804989 GTCGAGCCCAAATTGGTGAG 59.195 55.000 11.52 0.00 35.17 3.51
266 267 0.400213 TCGAGCCCAAATTGGTGAGT 59.600 50.000 11.52 0.00 35.17 3.41
267 268 0.804989 CGAGCCCAAATTGGTGAGTC 59.195 55.000 11.52 1.22 35.17 3.36
268 269 1.881925 CGAGCCCAAATTGGTGAGTCA 60.882 52.381 11.52 0.00 35.17 3.41
269 270 1.815003 GAGCCCAAATTGGTGAGTCAG 59.185 52.381 11.52 0.00 35.17 3.51
270 271 1.145738 AGCCCAAATTGGTGAGTCAGT 59.854 47.619 11.52 0.00 35.17 3.41
271 272 1.270550 GCCCAAATTGGTGAGTCAGTG 59.729 52.381 11.52 0.00 35.17 3.66
272 273 1.270550 CCCAAATTGGTGAGTCAGTGC 59.729 52.381 11.52 0.00 35.17 4.40
273 274 1.270550 CCAAATTGGTGAGTCAGTGCC 59.729 52.381 3.34 0.00 31.35 5.01
274 275 1.955778 CAAATTGGTGAGTCAGTGCCA 59.044 47.619 0.00 0.00 0.00 4.92
275 276 2.361757 CAAATTGGTGAGTCAGTGCCAA 59.638 45.455 14.21 14.21 43.95 4.52
276 277 1.901591 ATTGGTGAGTCAGTGCCAAG 58.098 50.000 16.29 0.00 43.20 3.61
277 278 0.179020 TTGGTGAGTCAGTGCCAAGG 60.179 55.000 9.12 0.00 36.23 3.61
278 279 1.053835 TGGTGAGTCAGTGCCAAGGA 61.054 55.000 0.00 0.00 0.00 3.36
279 280 0.326264 GGTGAGTCAGTGCCAAGGAT 59.674 55.000 0.00 0.00 0.00 3.24
280 281 1.555075 GGTGAGTCAGTGCCAAGGATA 59.445 52.381 0.00 0.00 0.00 2.59
281 282 2.419297 GGTGAGTCAGTGCCAAGGATAG 60.419 54.545 0.00 0.00 0.00 2.08
282 283 1.208052 TGAGTCAGTGCCAAGGATAGC 59.792 52.381 0.00 0.00 0.00 2.97
283 284 0.176680 AGTCAGTGCCAAGGATAGCG 59.823 55.000 0.00 0.00 0.00 4.26
284 285 1.153369 TCAGTGCCAAGGATAGCGC 60.153 57.895 0.00 0.00 39.80 5.92
285 286 2.202932 AGTGCCAAGGATAGCGCG 60.203 61.111 0.00 0.00 44.16 6.86
286 287 2.511600 GTGCCAAGGATAGCGCGT 60.512 61.111 8.43 0.00 0.00 6.01
287 288 2.202878 TGCCAAGGATAGCGCGTC 60.203 61.111 8.43 4.28 0.00 5.19
288 289 3.330853 GCCAAGGATAGCGCGTCG 61.331 66.667 8.43 0.00 0.00 5.12
289 290 2.658593 CCAAGGATAGCGCGTCGG 60.659 66.667 8.43 0.00 0.00 4.79
290 291 2.411701 CAAGGATAGCGCGTCGGA 59.588 61.111 8.43 0.00 0.00 4.55
291 292 1.007271 CAAGGATAGCGCGTCGGAT 60.007 57.895 8.43 0.00 0.00 4.18
292 293 1.004277 CAAGGATAGCGCGTCGGATC 61.004 60.000 8.43 8.62 0.00 3.36
293 294 1.173444 AAGGATAGCGCGTCGGATCT 61.173 55.000 8.43 0.00 0.00 2.75
294 295 1.442857 GGATAGCGCGTCGGATCTG 60.443 63.158 8.43 0.00 0.00 2.90
295 296 2.049985 ATAGCGCGTCGGATCTGC 60.050 61.111 8.43 0.00 0.00 4.26
296 297 3.559657 ATAGCGCGTCGGATCTGCC 62.560 63.158 8.43 0.00 0.00 4.85
299 300 4.193334 CGCGTCGGATCTGCCAGA 62.193 66.667 0.00 0.00 35.94 3.86
300 301 2.419198 GCGTCGGATCTGCCAGAT 59.581 61.111 6.98 6.98 37.73 2.90
301 302 1.953138 GCGTCGGATCTGCCAGATG 60.953 63.158 12.92 0.00 34.53 2.90
302 303 1.439228 CGTCGGATCTGCCAGATGT 59.561 57.895 12.92 0.00 34.53 3.06
303 304 0.596083 CGTCGGATCTGCCAGATGTC 60.596 60.000 12.92 0.00 34.53 3.06
304 305 0.596083 GTCGGATCTGCCAGATGTCG 60.596 60.000 12.92 15.09 34.53 4.35
305 306 1.953138 CGGATCTGCCAGATGTCGC 60.953 63.158 12.92 0.00 34.53 5.19
306 307 1.144716 GGATCTGCCAGATGTCGCA 59.855 57.895 12.92 0.00 34.53 5.10
307 308 1.156645 GGATCTGCCAGATGTCGCAC 61.157 60.000 12.92 0.00 34.53 5.34
308 309 0.460811 GATCTGCCAGATGTCGCACA 60.461 55.000 12.92 0.00 34.53 4.57
309 310 0.742281 ATCTGCCAGATGTCGCACAC 60.742 55.000 6.37 0.00 32.80 3.82
310 311 1.668793 CTGCCAGATGTCGCACACA 60.669 57.895 0.00 0.00 40.18 3.72
311 312 1.904852 CTGCCAGATGTCGCACACAC 61.905 60.000 0.00 0.00 38.04 3.82
312 313 1.960763 GCCAGATGTCGCACACACA 60.961 57.895 0.00 0.00 38.04 3.72
313 314 1.300971 GCCAGATGTCGCACACACAT 61.301 55.000 0.00 0.00 38.04 3.21
314 315 0.445043 CCAGATGTCGCACACACATG 59.555 55.000 0.00 0.00 38.04 3.21
315 316 1.431496 CAGATGTCGCACACACATGA 58.569 50.000 0.00 0.00 38.04 3.07
316 317 1.127397 CAGATGTCGCACACACATGAC 59.873 52.381 0.00 0.00 38.04 3.06
317 318 1.147473 GATGTCGCACACACATGACA 58.853 50.000 0.00 0.00 44.58 3.58
318 319 1.530720 GATGTCGCACACACATGACAA 59.469 47.619 0.00 0.00 43.78 3.18
319 320 1.373570 TGTCGCACACACATGACAAA 58.626 45.000 0.00 0.00 38.32 2.83
320 321 1.740025 TGTCGCACACACATGACAAAA 59.260 42.857 0.00 0.00 38.32 2.44
321 322 2.108700 GTCGCACACACATGACAAAAC 58.891 47.619 0.00 0.00 0.00 2.43
322 323 2.013400 TCGCACACACATGACAAAACT 58.987 42.857 0.00 0.00 0.00 2.66
323 324 2.110990 CGCACACACATGACAAAACTG 58.889 47.619 0.00 0.00 0.00 3.16
324 325 2.477694 CGCACACACATGACAAAACTGT 60.478 45.455 0.00 0.00 0.00 3.55
325 326 3.510719 GCACACACATGACAAAACTGTT 58.489 40.909 0.00 0.00 0.00 3.16
326 327 3.304026 GCACACACATGACAAAACTGTTG 59.696 43.478 0.00 0.00 0.00 3.33
327 328 3.304026 CACACACATGACAAAACTGTTGC 59.696 43.478 0.00 0.00 0.00 4.17
328 329 2.531103 CACACATGACAAAACTGTTGCG 59.469 45.455 0.00 0.00 0.00 4.85
329 330 1.518102 CACATGACAAAACTGTTGCGC 59.482 47.619 0.00 0.00 0.00 6.09
330 331 0.771756 CATGACAAAACTGTTGCGCG 59.228 50.000 0.00 0.00 0.00 6.86
331 332 0.380378 ATGACAAAACTGTTGCGCGT 59.620 45.000 8.43 0.00 0.00 6.01
332 333 0.247894 TGACAAAACTGTTGCGCGTC 60.248 50.000 8.43 0.66 0.00 5.19
333 334 0.928451 GACAAAACTGTTGCGCGTCC 60.928 55.000 8.43 0.00 0.00 4.79
334 335 2.003443 CAAAACTGTTGCGCGTCCG 61.003 57.895 8.43 0.00 37.57 4.79
335 336 3.175976 AAAACTGTTGCGCGTCCGG 62.176 57.895 8.43 0.00 34.32 5.14
345 346 3.703127 GCGTCCGGGGTTCCTCTT 61.703 66.667 0.00 0.00 0.00 2.85
346 347 2.264794 CGTCCGGGGTTCCTCTTG 59.735 66.667 0.00 0.00 0.00 3.02
347 348 2.580601 CGTCCGGGGTTCCTCTTGT 61.581 63.158 0.00 0.00 0.00 3.16
348 349 1.252904 CGTCCGGGGTTCCTCTTGTA 61.253 60.000 0.00 0.00 0.00 2.41
349 350 1.201424 GTCCGGGGTTCCTCTTGTAT 58.799 55.000 0.00 0.00 0.00 2.29
350 351 1.134491 GTCCGGGGTTCCTCTTGTATG 60.134 57.143 0.00 0.00 0.00 2.39
351 352 0.180406 CCGGGGTTCCTCTTGTATGG 59.820 60.000 0.00 0.00 0.00 2.74
352 353 1.200519 CGGGGTTCCTCTTGTATGGA 58.799 55.000 0.00 0.00 0.00 3.41
353 354 1.768870 CGGGGTTCCTCTTGTATGGAT 59.231 52.381 0.00 0.00 31.76 3.41
354 355 2.224305 CGGGGTTCCTCTTGTATGGATC 60.224 54.545 0.00 0.00 31.76 3.36
355 356 2.224305 GGGGTTCCTCTTGTATGGATCG 60.224 54.545 0.00 0.00 31.76 3.69
356 357 2.224305 GGGTTCCTCTTGTATGGATCGG 60.224 54.545 0.00 0.00 31.76 4.18
357 358 2.698797 GGTTCCTCTTGTATGGATCGGA 59.301 50.000 0.00 0.00 31.76 4.55
358 359 3.325135 GGTTCCTCTTGTATGGATCGGAT 59.675 47.826 0.00 0.00 31.76 4.18
359 360 4.310769 GTTCCTCTTGTATGGATCGGATG 58.689 47.826 0.00 0.00 31.76 3.51
360 361 2.300152 TCCTCTTGTATGGATCGGATGC 59.700 50.000 2.14 2.14 0.00 3.91
361 362 2.332104 CTCTTGTATGGATCGGATGCG 58.668 52.381 0.00 0.00 0.00 4.73
362 363 1.686587 TCTTGTATGGATCGGATGCGT 59.313 47.619 6.49 9.25 0.00 5.24
363 364 1.794701 CTTGTATGGATCGGATGCGTG 59.205 52.381 13.71 0.00 0.00 5.34
364 365 0.033366 TGTATGGATCGGATGCGTGG 59.967 55.000 13.71 0.00 0.00 4.94
365 366 0.317160 GTATGGATCGGATGCGTGGA 59.683 55.000 13.71 0.00 0.00 4.02
366 367 0.603065 TATGGATCGGATGCGTGGAG 59.397 55.000 13.71 0.00 0.00 3.86
367 368 1.115326 ATGGATCGGATGCGTGGAGA 61.115 55.000 6.49 0.00 0.00 3.71
368 369 1.115326 TGGATCGGATGCGTGGAGAT 61.115 55.000 6.49 0.00 0.00 2.75
369 370 0.034059 GGATCGGATGCGTGGAGATT 59.966 55.000 6.49 0.00 0.00 2.40
370 371 1.541233 GGATCGGATGCGTGGAGATTT 60.541 52.381 6.49 0.00 0.00 2.17
371 372 1.528586 GATCGGATGCGTGGAGATTTG 59.471 52.381 6.49 0.00 0.00 2.32
372 373 0.249120 TCGGATGCGTGGAGATTTGT 59.751 50.000 6.49 0.00 0.00 2.83
373 374 0.374758 CGGATGCGTGGAGATTTGTG 59.625 55.000 0.00 0.00 0.00 3.33
374 375 1.737838 GGATGCGTGGAGATTTGTGA 58.262 50.000 0.00 0.00 0.00 3.58
375 376 1.398390 GGATGCGTGGAGATTTGTGAC 59.602 52.381 0.00 0.00 0.00 3.67
376 377 2.350522 GATGCGTGGAGATTTGTGACT 58.649 47.619 0.00 0.00 0.00 3.41
377 378 2.254546 TGCGTGGAGATTTGTGACTT 57.745 45.000 0.00 0.00 0.00 3.01
378 379 2.571212 TGCGTGGAGATTTGTGACTTT 58.429 42.857 0.00 0.00 0.00 2.66
379 380 2.548057 TGCGTGGAGATTTGTGACTTTC 59.452 45.455 0.00 0.00 0.00 2.62
380 381 2.548057 GCGTGGAGATTTGTGACTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
381 382 3.364366 GCGTGGAGATTTGTGACTTTCAG 60.364 47.826 0.00 0.00 0.00 3.02
382 383 4.058124 CGTGGAGATTTGTGACTTTCAGA 58.942 43.478 0.00 0.00 0.00 3.27
383 384 4.692625 CGTGGAGATTTGTGACTTTCAGAT 59.307 41.667 0.00 0.00 0.00 2.90
384 385 5.163913 CGTGGAGATTTGTGACTTTCAGATC 60.164 44.000 0.00 0.00 0.00 2.75
385 386 4.931601 TGGAGATTTGTGACTTTCAGATCG 59.068 41.667 0.00 0.00 33.53 3.69
386 387 4.331168 GGAGATTTGTGACTTTCAGATCGG 59.669 45.833 0.00 0.00 33.53 4.18
387 388 5.152623 AGATTTGTGACTTTCAGATCGGA 57.847 39.130 0.00 0.00 33.53 4.55
388 389 4.932200 AGATTTGTGACTTTCAGATCGGAC 59.068 41.667 0.00 0.00 33.53 4.79
389 390 2.347697 TGTGACTTTCAGATCGGACG 57.652 50.000 0.00 0.00 0.00 4.79
390 391 1.067846 TGTGACTTTCAGATCGGACGG 60.068 52.381 0.00 0.00 0.00 4.79
391 392 0.108804 TGACTTTCAGATCGGACGGC 60.109 55.000 0.00 0.00 0.00 5.68
392 393 0.173708 GACTTTCAGATCGGACGGCT 59.826 55.000 0.00 0.00 0.00 5.52
393 394 0.108615 ACTTTCAGATCGGACGGCTG 60.109 55.000 0.00 0.00 0.00 4.85
394 395 1.424493 CTTTCAGATCGGACGGCTGC 61.424 60.000 0.00 0.00 0.00 5.25
395 396 3.699955 TTCAGATCGGACGGCTGCG 62.700 63.158 0.00 0.00 0.00 5.18
398 399 4.933064 GATCGGACGGCTGCGGAG 62.933 72.222 14.45 0.00 0.00 4.63
417 418 4.460683 CGGCCGATCGGGTTGGAA 62.461 66.667 33.98 0.00 38.44 3.53
418 419 2.192175 GGCCGATCGGGTTGGAAT 59.808 61.111 33.98 0.00 38.44 3.01
419 420 1.448497 GGCCGATCGGGTTGGAATA 59.552 57.895 33.98 0.00 38.44 1.75
420 421 0.036306 GGCCGATCGGGTTGGAATAT 59.964 55.000 33.98 0.00 38.44 1.28
428 429 5.278808 CGATCGGGTTGGAATATCAGTAAGA 60.279 44.000 7.38 0.00 0.00 2.10
429 430 5.272283 TCGGGTTGGAATATCAGTAAGAC 57.728 43.478 0.00 0.00 0.00 3.01
432 433 5.123936 GGGTTGGAATATCAGTAAGACCAC 58.876 45.833 0.00 0.00 0.00 4.16
451 452 0.110238 CATTGTTTGACGCCGACAGG 60.110 55.000 0.00 0.00 41.62 4.00
455 456 1.009389 GTTTGACGCCGACAGGAGAG 61.009 60.000 0.00 0.00 39.96 3.20
511 512 1.065358 CGGTGTACGCCTTGTTGTAG 58.935 55.000 22.65 1.21 34.82 2.74
557 564 2.032377 TGAAAAACGATGTCGGAGCAAC 60.032 45.455 7.38 0.00 44.95 4.17
845 907 3.537874 GTCCCGTCCAGATCCCCG 61.538 72.222 0.00 0.00 0.00 5.73
977 1050 1.203050 GGAGGAGGGGATCTCTCTCTG 60.203 61.905 9.95 0.00 42.10 3.35
978 1051 0.188342 AGGAGGGGATCTCTCTCTGC 59.812 60.000 9.95 0.00 42.10 4.26
1334 1436 2.591072 CCCTGTGAGTGCTCTGCCT 61.591 63.158 0.00 0.00 0.00 4.75
1336 1438 1.670015 CTGTGAGTGCTCTGCCTCA 59.330 57.895 0.00 6.63 35.00 3.86
1338 1440 0.248565 TGTGAGTGCTCTGCCTCATC 59.751 55.000 11.63 7.94 37.84 2.92
1368 1470 2.200092 GCCTCCGGATCTCCCTCT 59.800 66.667 3.57 0.00 0.00 3.69
1369 1471 1.906333 GCCTCCGGATCTCCCTCTC 60.906 68.421 3.57 0.00 0.00 3.20
1370 1472 1.602323 CCTCCGGATCTCCCTCTCG 60.602 68.421 3.57 0.00 0.00 4.04
1371 1473 2.203365 TCCGGATCTCCCTCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
1372 1474 3.299190 CCGGATCTCCCTCTCGCC 61.299 72.222 0.00 0.00 0.00 5.54
1373 1475 2.519541 CGGATCTCCCTCTCGCCA 60.520 66.667 0.00 0.00 0.00 5.69
1374 1476 2.560119 CGGATCTCCCTCTCGCCAG 61.560 68.421 0.00 0.00 0.00 4.85
1375 1477 2.733945 GATCTCCCTCTCGCCAGC 59.266 66.667 0.00 0.00 0.00 4.85
1376 1478 1.832167 GATCTCCCTCTCGCCAGCT 60.832 63.158 0.00 0.00 0.00 4.24
1377 1479 1.805428 GATCTCCCTCTCGCCAGCTC 61.805 65.000 0.00 0.00 0.00 4.09
1434 1540 0.110486 TCTGGTTGCCTCCTTGTTCC 59.890 55.000 0.00 0.00 0.00 3.62
1660 1769 4.720649 TCATCTCTCGGTTTACTTCCAG 57.279 45.455 0.00 0.00 0.00 3.86
1667 1776 1.804748 CGGTTTACTTCCAGTTGCTCC 59.195 52.381 0.00 0.00 0.00 4.70
1676 1785 0.747283 CCAGTTGCTCCATGGCTCTC 60.747 60.000 6.96 0.00 0.00 3.20
1678 1787 0.252479 AGTTGCTCCATGGCTCTCTG 59.748 55.000 6.96 0.00 0.00 3.35
1722 1835 0.827925 TCTCTGCAGTCGTCCCAACT 60.828 55.000 14.67 0.00 0.00 3.16
1746 1859 2.267961 GGAACCGCCCTCGACATT 59.732 61.111 0.00 0.00 38.10 2.71
1806 1919 0.817654 TCGCCACTATGGTCTGTCAG 59.182 55.000 0.00 0.00 40.46 3.51
1823 1936 3.058293 TGTCAGCCGCAAAAGTGATTTAG 60.058 43.478 0.00 0.00 0.00 1.85
1843 1956 8.617290 ATTTAGTCCACTTACAGTTTCGATTT 57.383 30.769 0.00 0.00 0.00 2.17
1846 1959 5.465724 AGTCCACTTACAGTTTCGATTTCAC 59.534 40.000 0.00 0.00 0.00 3.18
1852 1965 4.410492 ACAGTTTCGATTTCACTGCATC 57.590 40.909 12.16 0.00 41.49 3.91
1893 2006 8.084684 GCTAACTTGATTTCTGAATTTTGACCT 58.915 33.333 0.00 0.00 0.00 3.85
1913 2026 3.551863 CCTTTTTGCAGTGTAAATCGGCA 60.552 43.478 7.24 0.00 34.64 5.69
1937 2050 6.463995 TCGCCAATATTCCTTTTGCTATTT 57.536 33.333 0.00 0.00 0.00 1.40
1943 2056 8.606602 CCAATATTCCTTTTGCTATTTGCTTTC 58.393 33.333 0.00 0.00 43.37 2.62
1980 2101 6.372659 AGTCTTGTAATTGGATAACTGCTGTG 59.627 38.462 0.00 0.00 0.00 3.66
1993 2114 0.038021 TGCTGTGCCATGGCTTTCTA 59.962 50.000 35.53 14.23 42.51 2.10
2025 2146 3.482156 TTAGCTGGGATGCTCATTCTC 57.518 47.619 0.00 0.00 42.97 2.87
2098 2259 6.576185 CAGGGCATGCATTTTTACTAATTCT 58.424 36.000 21.36 0.00 0.00 2.40
2191 2352 6.103997 CCAATGCTGCAACTGATCTATTTTT 58.896 36.000 6.36 0.00 0.00 1.94
2213 2374 1.283905 GGGTGGGTTAAGCCAGTACAT 59.716 52.381 26.32 0.00 39.65 2.29
2234 2395 6.040878 ACATAGGTATTGCTAGTTCGTTCAC 58.959 40.000 0.00 0.00 0.00 3.18
2267 2444 9.044150 CCAAAACTGTGTTGATCAAATGTAAAT 57.956 29.630 10.35 0.00 0.00 1.40
2332 2511 8.292448 ACTAATTTCGATGGTGAATAATCATGC 58.708 33.333 0.00 0.00 38.01 4.06
2344 2523 0.034574 AATCATGCCCGCACCACTTA 60.035 50.000 0.00 0.00 0.00 2.24
2417 2596 5.368989 AGAGGGCTAACATATACAAACTGC 58.631 41.667 0.00 0.00 0.00 4.40
2421 2600 5.499047 GGCTAACATATACAAACTGCGTTC 58.501 41.667 0.00 0.00 0.00 3.95
2422 2601 5.064198 GGCTAACATATACAAACTGCGTTCA 59.936 40.000 0.00 0.00 0.00 3.18
2447 2626 9.807649 CAATTTTATATGGCTCTAAAAGTTGCT 57.192 29.630 0.00 0.00 32.17 3.91
2459 2638 6.362248 TCTAAAAGTTGCTTCCTGGTTTACT 58.638 36.000 0.00 0.00 0.00 2.24
2463 2642 2.747989 GTTGCTTCCTGGTTTACTAGGC 59.252 50.000 7.37 0.00 43.51 3.93
2585 2764 5.366768 AGGTTTATTATGGTAGCTGCTGAGA 59.633 40.000 13.43 0.00 0.00 3.27
2671 2850 7.012421 GGTTGTCCATCTCTGTAATTATTCCAC 59.988 40.741 0.00 0.00 0.00 4.02
2784 2963 8.966868 CCTAACTGTGTAATATCCCAACAAATT 58.033 33.333 0.00 0.00 0.00 1.82
2893 3072 3.307762 GGAAATTAGTCTCACCACTGGCT 60.308 47.826 0.00 0.00 0.00 4.75
2904 3083 7.071196 AGTCTCACCACTGGCTATCATTTTATA 59.929 37.037 0.00 0.00 0.00 0.98
3030 3215 7.175104 TGTTCTTCTAGGCAGTTTTAATCCAT 58.825 34.615 0.00 0.00 0.00 3.41
3134 3322 8.141268 TCCAGTTTTGTAGTTGAATGATTTTCC 58.859 33.333 0.00 0.00 0.00 3.13
3144 3332 8.697507 AGTTGAATGATTTTCCTGTCTAAGTT 57.302 30.769 0.00 0.00 0.00 2.66
3165 3353 3.593442 ACCTCAATTGTTGTCCTCCAA 57.407 42.857 5.13 0.00 0.00 3.53
3347 3537 7.660617 CCATGACTCAGATTCTATTGCAAGTAT 59.339 37.037 4.94 0.00 0.00 2.12
3415 3612 3.245407 CCTCCCATCTTTCCTGTTTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
3533 3730 2.467826 GCGCACTTCCATGCCTCTC 61.468 63.158 0.30 0.00 42.99 3.20
3630 3853 2.750166 GGTTTAGCTCCTTTTCTCCAGC 59.250 50.000 0.00 0.00 0.00 4.85
3631 3854 3.560239 GGTTTAGCTCCTTTTCTCCAGCT 60.560 47.826 0.00 0.00 44.50 4.24
3632 3855 4.323562 GGTTTAGCTCCTTTTCTCCAGCTA 60.324 45.833 0.00 0.00 42.34 3.32
4130 4386 3.658725 AGCCACCATGGTACTATCTCTT 58.341 45.455 19.28 0.00 40.46 2.85
4223 4479 6.971726 TTCTTACTTATGCTAATCGGAGGA 57.028 37.500 0.00 0.00 0.00 3.71
4782 5038 5.746284 AGGCGAGCTATCAGTAGTCATATA 58.254 41.667 0.00 0.00 0.00 0.86
4796 5052 9.214957 CAGTAGTCATATACAAAAGTCCAACAA 57.785 33.333 0.00 0.00 0.00 2.83
4848 5104 4.937620 GTGTTGGTTCTAGCATGAAGATGA 59.062 41.667 0.00 0.00 0.00 2.92
4864 5120 9.000486 CATGAAGATGAATACTGCACTTGATAT 58.000 33.333 0.00 0.00 0.00 1.63
4865 5121 8.599055 TGAAGATGAATACTGCACTTGATATC 57.401 34.615 0.00 0.00 0.00 1.63
4866 5122 8.206189 TGAAGATGAATACTGCACTTGATATCA 58.794 33.333 0.00 0.00 0.00 2.15
4867 5123 9.217278 GAAGATGAATACTGCACTTGATATCAT 57.783 33.333 6.17 0.00 0.00 2.45
4882 5138 8.000709 ACTTGATATCATTCATAGCCCAAAAGA 58.999 33.333 6.17 0.00 0.00 2.52
5125 5383 6.599638 ACAGCTTACATATTCTTCTTGGGAAC 59.400 38.462 0.00 0.00 0.00 3.62
5267 5569 4.047822 GCTCGGAGACATGAATACTGAAG 58.952 47.826 9.69 0.00 0.00 3.02
5364 5670 2.093816 TCATCTTCTACAGTGCTGCCTG 60.094 50.000 14.07 14.07 38.45 4.85
5392 5698 9.702726 CAGTTTATTTAACGAATCATACTGTGG 57.297 33.333 0.00 0.00 41.78 4.17
5431 5737 9.599322 CAGTCTTTGACACAACATAAATACTTC 57.401 33.333 0.46 0.00 34.60 3.01
5702 6010 5.714863 TCATTTAGTGGGGATGCCAAATAT 58.285 37.500 5.30 0.00 0.00 1.28
5862 6173 2.613977 GCAGACTTAGGCACACAGATGT 60.614 50.000 0.00 0.00 40.80 3.06
6180 6496 2.550830 ATTGTGCTGTCGTTCCTTCT 57.449 45.000 0.00 0.00 0.00 2.85
6186 6502 0.318441 CTGTCGTTCCTTCTGCTCCA 59.682 55.000 0.00 0.00 0.00 3.86
6282 6598 8.812329 GCTAGTAACTAAATGATGAGTGTCAAG 58.188 37.037 0.00 0.00 0.00 3.02
6295 6611 3.737850 AGTGTCAAGAGCAAGAAGAAGG 58.262 45.455 0.00 0.00 0.00 3.46
6497 6817 9.066892 TGTTTGTTAAGATTATTCAGCTCTTGT 57.933 29.630 0.00 0.00 31.89 3.16
6508 6828 4.071961 TCAGCTCTTGTTCTTGCACTTA 57.928 40.909 0.00 0.00 0.00 2.24
6606 6926 2.812499 CCATTGATGGCTGCCTGC 59.188 61.111 21.03 12.04 41.75 4.85
6744 7070 8.699130 CCTGGATTGCAGTATATCATACTATGA 58.301 37.037 4.39 1.10 44.55 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.647615 CGCCGCACCTCCCTATCG 62.648 72.222 0.00 0.00 0.00 2.92
1 2 4.301027 CCGCCGCACCTCCCTATC 62.301 72.222 0.00 0.00 0.00 2.08
29 30 4.735358 GTTCCCGCCCCACTTCCC 62.735 72.222 0.00 0.00 0.00 3.97
31 32 3.540367 TTCGTTCCCGCCCCACTTC 62.540 63.158 0.00 0.00 0.00 3.01
32 33 2.420466 ATTTCGTTCCCGCCCCACTT 62.420 55.000 0.00 0.00 0.00 3.16
33 34 2.814913 GATTTCGTTCCCGCCCCACT 62.815 60.000 0.00 0.00 0.00 4.00
34 35 2.360726 ATTTCGTTCCCGCCCCAC 60.361 61.111 0.00 0.00 0.00 4.61
35 36 2.045731 GATTTCGTTCCCGCCCCA 60.046 61.111 0.00 0.00 0.00 4.96
36 37 3.199891 CGATTTCGTTCCCGCCCC 61.200 66.667 0.00 0.00 34.11 5.80
37 38 3.199891 CCGATTTCGTTCCCGCCC 61.200 66.667 0.00 0.00 37.74 6.13
38 39 3.199891 CCCGATTTCGTTCCCGCC 61.200 66.667 0.00 0.00 37.74 6.13
39 40 3.872728 GCCCGATTTCGTTCCCGC 61.873 66.667 0.00 0.00 37.74 6.13
40 41 3.560278 CGCCCGATTTCGTTCCCG 61.560 66.667 0.00 0.00 37.74 5.14
41 42 3.199891 CCGCCCGATTTCGTTCCC 61.200 66.667 0.00 0.00 37.74 3.97
42 43 1.300266 TTTCCGCCCGATTTCGTTCC 61.300 55.000 0.00 0.00 37.74 3.62
43 44 0.730840 ATTTCCGCCCGATTTCGTTC 59.269 50.000 0.00 0.00 37.74 3.95
44 45 0.450184 CATTTCCGCCCGATTTCGTT 59.550 50.000 0.00 0.00 37.74 3.85
45 46 0.675522 ACATTTCCGCCCGATTTCGT 60.676 50.000 0.00 0.00 37.74 3.85
46 47 0.027586 GACATTTCCGCCCGATTTCG 59.972 55.000 0.00 0.00 39.44 3.46
47 48 0.380733 GGACATTTCCGCCCGATTTC 59.619 55.000 0.00 0.00 29.98 2.17
48 49 2.489040 GGACATTTCCGCCCGATTT 58.511 52.632 0.00 0.00 29.98 2.17
49 50 4.235731 GGACATTTCCGCCCGATT 57.764 55.556 0.00 0.00 29.98 3.34
57 58 1.200020 CTTGGCACGAAGGACATTTCC 59.800 52.381 0.00 0.00 43.22 3.13
58 59 1.200020 CCTTGGCACGAAGGACATTTC 59.800 52.381 5.57 0.00 44.87 2.17
59 60 1.247567 CCTTGGCACGAAGGACATTT 58.752 50.000 5.57 0.00 44.87 2.32
60 61 0.609131 CCCTTGGCACGAAGGACATT 60.609 55.000 12.51 0.00 44.87 2.71
61 62 1.002134 CCCTTGGCACGAAGGACAT 60.002 57.895 12.51 0.00 44.87 3.06
62 63 1.701031 TTCCCTTGGCACGAAGGACA 61.701 55.000 12.51 0.00 44.87 4.02
63 64 0.536460 TTTCCCTTGGCACGAAGGAC 60.536 55.000 12.51 0.00 44.87 3.85
64 65 0.250727 CTTTCCCTTGGCACGAAGGA 60.251 55.000 12.51 0.00 44.87 3.36
65 66 1.244019 CCTTTCCCTTGGCACGAAGG 61.244 60.000 4.57 4.57 42.11 3.46
66 67 1.244019 CCCTTTCCCTTGGCACGAAG 61.244 60.000 0.00 0.00 0.00 3.79
67 68 1.228429 CCCTTTCCCTTGGCACGAA 60.228 57.895 0.00 0.00 0.00 3.85
68 69 2.434331 CCCTTTCCCTTGGCACGA 59.566 61.111 0.00 0.00 0.00 4.35
69 70 3.373565 GCCCTTTCCCTTGGCACG 61.374 66.667 0.00 0.00 44.70 5.34
72 73 2.363018 GGAGCCCTTTCCCTTGGC 60.363 66.667 0.00 0.00 45.70 4.52
73 74 2.044946 CGGAGCCCTTTCCCTTGG 60.045 66.667 0.00 0.00 33.46 3.61
74 75 2.044946 CCGGAGCCCTTTCCCTTG 60.045 66.667 0.00 0.00 33.46 3.61
75 76 4.048470 GCCGGAGCCCTTTCCCTT 62.048 66.667 5.05 0.00 33.46 3.95
77 78 3.879180 TTTGCCGGAGCCCTTTCCC 62.879 63.158 5.05 0.00 38.69 3.97
78 79 1.906333 TTTTGCCGGAGCCCTTTCC 60.906 57.895 5.05 0.00 38.69 3.13
79 80 1.289066 GTTTTGCCGGAGCCCTTTC 59.711 57.895 5.05 0.00 38.69 2.62
80 81 1.045911 TTGTTTTGCCGGAGCCCTTT 61.046 50.000 5.05 0.00 38.69 3.11
81 82 1.456705 TTGTTTTGCCGGAGCCCTT 60.457 52.632 5.05 0.00 38.69 3.95
82 83 1.903404 CTTGTTTTGCCGGAGCCCT 60.903 57.895 5.05 0.00 38.69 5.19
83 84 2.650778 CTTGTTTTGCCGGAGCCC 59.349 61.111 5.05 0.00 38.69 5.19
84 85 2.049156 GCTTGTTTTGCCGGAGCC 60.049 61.111 5.05 0.00 38.69 4.70
85 86 2.049156 GGCTTGTTTTGCCGGAGC 60.049 61.111 5.05 2.26 41.03 4.70
91 92 5.713025 TCTATGAGAATTGGCTTGTTTTGC 58.287 37.500 0.00 0.00 0.00 3.68
92 93 9.459640 CATATCTATGAGAATTGGCTTGTTTTG 57.540 33.333 0.00 0.00 35.75 2.44
93 94 8.636213 CCATATCTATGAGAATTGGCTTGTTTT 58.364 33.333 0.00 0.00 35.75 2.43
94 95 7.781693 ACCATATCTATGAGAATTGGCTTGTTT 59.218 33.333 7.58 0.00 35.13 2.83
95 96 7.230108 CACCATATCTATGAGAATTGGCTTGTT 59.770 37.037 7.58 0.00 35.13 2.83
96 97 6.713903 CACCATATCTATGAGAATTGGCTTGT 59.286 38.462 7.58 0.00 35.13 3.16
97 98 6.938596 TCACCATATCTATGAGAATTGGCTTG 59.061 38.462 7.58 2.26 35.13 4.01
98 99 7.083062 TCACCATATCTATGAGAATTGGCTT 57.917 36.000 7.58 0.00 35.13 4.35
99 100 6.692849 TCACCATATCTATGAGAATTGGCT 57.307 37.500 7.58 0.00 35.13 4.75
100 101 7.750229 TTTCACCATATCTATGAGAATTGGC 57.250 36.000 7.58 0.00 35.13 4.52
104 105 9.872684 ACCAATTTTCACCATATCTATGAGAAT 57.127 29.630 0.00 0.00 35.75 2.40
105 106 9.342308 GACCAATTTTCACCATATCTATGAGAA 57.658 33.333 0.00 1.14 35.75 2.87
106 107 7.657354 CGACCAATTTTCACCATATCTATGAGA 59.343 37.037 0.00 0.00 35.75 3.27
107 108 7.442364 ACGACCAATTTTCACCATATCTATGAG 59.558 37.037 0.00 0.00 35.75 2.90
108 109 7.226523 CACGACCAATTTTCACCATATCTATGA 59.773 37.037 0.00 0.00 35.75 2.15
109 110 7.355017 CACGACCAATTTTCACCATATCTATG 58.645 38.462 0.00 0.00 0.00 2.23
110 111 6.486657 CCACGACCAATTTTCACCATATCTAT 59.513 38.462 0.00 0.00 0.00 1.98
111 112 5.820423 CCACGACCAATTTTCACCATATCTA 59.180 40.000 0.00 0.00 0.00 1.98
112 113 4.640201 CCACGACCAATTTTCACCATATCT 59.360 41.667 0.00 0.00 0.00 1.98
113 114 4.398044 ACCACGACCAATTTTCACCATATC 59.602 41.667 0.00 0.00 0.00 1.63
114 115 4.340617 ACCACGACCAATTTTCACCATAT 58.659 39.130 0.00 0.00 0.00 1.78
115 116 3.757270 ACCACGACCAATTTTCACCATA 58.243 40.909 0.00 0.00 0.00 2.74
116 117 2.593026 ACCACGACCAATTTTCACCAT 58.407 42.857 0.00 0.00 0.00 3.55
117 118 2.060050 ACCACGACCAATTTTCACCA 57.940 45.000 0.00 0.00 0.00 4.17
118 119 3.120041 CAAACCACGACCAATTTTCACC 58.880 45.455 0.00 0.00 0.00 4.02
119 120 2.538037 GCAAACCACGACCAATTTTCAC 59.462 45.455 0.00 0.00 0.00 3.18
120 121 2.166459 TGCAAACCACGACCAATTTTCA 59.834 40.909 0.00 0.00 0.00 2.69
121 122 2.815478 TGCAAACCACGACCAATTTTC 58.185 42.857 0.00 0.00 0.00 2.29
122 123 2.969628 TGCAAACCACGACCAATTTT 57.030 40.000 0.00 0.00 0.00 1.82
123 124 2.428890 TCTTGCAAACCACGACCAATTT 59.571 40.909 0.00 0.00 0.00 1.82
124 125 2.028130 TCTTGCAAACCACGACCAATT 58.972 42.857 0.00 0.00 0.00 2.32
125 126 1.686355 TCTTGCAAACCACGACCAAT 58.314 45.000 0.00 0.00 0.00 3.16
126 127 1.606668 GATCTTGCAAACCACGACCAA 59.393 47.619 0.00 0.00 0.00 3.67
127 128 1.234821 GATCTTGCAAACCACGACCA 58.765 50.000 0.00 0.00 0.00 4.02
128 129 0.521735 GGATCTTGCAAACCACGACC 59.478 55.000 0.00 0.00 0.00 4.79
129 130 0.521735 GGGATCTTGCAAACCACGAC 59.478 55.000 15.52 0.00 0.00 4.34
130 131 0.953471 CGGGATCTTGCAAACCACGA 60.953 55.000 10.38 0.00 0.00 4.35
131 132 1.234615 ACGGGATCTTGCAAACCACG 61.235 55.000 13.29 13.29 0.00 4.94
132 133 1.816074 TACGGGATCTTGCAAACCAC 58.184 50.000 15.52 2.83 0.00 4.16
133 134 2.570415 TTACGGGATCTTGCAAACCA 57.430 45.000 15.52 0.00 0.00 3.67
134 135 3.004944 TGTTTTACGGGATCTTGCAAACC 59.995 43.478 0.00 4.54 0.00 3.27
135 136 4.231718 TGTTTTACGGGATCTTGCAAAC 57.768 40.909 0.00 0.00 0.00 2.93
136 137 4.920640 TTGTTTTACGGGATCTTGCAAA 57.079 36.364 0.00 0.00 0.00 3.68
137 138 4.920640 TTTGTTTTACGGGATCTTGCAA 57.079 36.364 0.00 0.00 0.00 4.08
138 139 4.920640 TTTTGTTTTACGGGATCTTGCA 57.079 36.364 0.00 0.00 0.00 4.08
139 140 5.572896 CAGATTTTGTTTTACGGGATCTTGC 59.427 40.000 0.00 0.00 0.00 4.01
140 141 6.908825 TCAGATTTTGTTTTACGGGATCTTG 58.091 36.000 0.00 0.00 0.00 3.02
141 142 6.940298 TCTCAGATTTTGTTTTACGGGATCTT 59.060 34.615 0.00 0.00 0.00 2.40
142 143 6.371825 GTCTCAGATTTTGTTTTACGGGATCT 59.628 38.462 0.00 0.00 0.00 2.75
143 144 6.543736 GTCTCAGATTTTGTTTTACGGGATC 58.456 40.000 0.00 0.00 0.00 3.36
144 145 5.121768 CGTCTCAGATTTTGTTTTACGGGAT 59.878 40.000 0.00 0.00 0.00 3.85
145 146 4.449743 CGTCTCAGATTTTGTTTTACGGGA 59.550 41.667 0.00 0.00 0.00 5.14
146 147 4.449743 TCGTCTCAGATTTTGTTTTACGGG 59.550 41.667 0.00 0.00 0.00 5.28
147 148 5.585500 TCGTCTCAGATTTTGTTTTACGG 57.415 39.130 0.00 0.00 0.00 4.02
148 149 5.946389 CGATCGTCTCAGATTTTGTTTTACG 59.054 40.000 7.03 0.00 0.00 3.18
149 150 7.045725 TCGATCGTCTCAGATTTTGTTTTAC 57.954 36.000 15.94 0.00 0.00 2.01
150 151 7.646446 TTCGATCGTCTCAGATTTTGTTTTA 57.354 32.000 15.94 0.00 0.00 1.52
151 152 6.539649 TTCGATCGTCTCAGATTTTGTTTT 57.460 33.333 15.94 0.00 0.00 2.43
152 153 6.727824 ATTCGATCGTCTCAGATTTTGTTT 57.272 33.333 15.94 0.00 0.00 2.83
153 154 9.186323 CTATATTCGATCGTCTCAGATTTTGTT 57.814 33.333 15.94 0.00 0.00 2.83
154 155 7.810282 CCTATATTCGATCGTCTCAGATTTTGT 59.190 37.037 15.94 0.00 0.00 2.83
155 156 7.274468 CCCTATATTCGATCGTCTCAGATTTTG 59.726 40.741 15.94 0.00 0.00 2.44
156 157 7.316640 CCCTATATTCGATCGTCTCAGATTTT 58.683 38.462 15.94 0.00 0.00 1.82
157 158 6.127591 CCCCTATATTCGATCGTCTCAGATTT 60.128 42.308 15.94 0.16 0.00 2.17
158 159 5.358442 CCCCTATATTCGATCGTCTCAGATT 59.642 44.000 15.94 0.00 0.00 2.40
159 160 4.884744 CCCCTATATTCGATCGTCTCAGAT 59.115 45.833 15.94 3.70 0.00 2.90
160 161 4.019591 TCCCCTATATTCGATCGTCTCAGA 60.020 45.833 15.94 0.00 0.00 3.27
161 162 4.262617 TCCCCTATATTCGATCGTCTCAG 58.737 47.826 15.94 7.19 0.00 3.35
162 163 4.296621 TCCCCTATATTCGATCGTCTCA 57.703 45.455 15.94 0.00 0.00 3.27
163 164 5.127491 AGATCCCCTATATTCGATCGTCTC 58.873 45.833 15.94 0.00 36.94 3.36
164 165 5.118729 AGATCCCCTATATTCGATCGTCT 57.881 43.478 15.94 6.22 36.94 4.18
165 166 7.513371 AATAGATCCCCTATATTCGATCGTC 57.487 40.000 15.94 0.24 37.09 4.20
166 167 7.513371 GAATAGATCCCCTATATTCGATCGT 57.487 40.000 15.94 0.00 37.09 3.73
172 173 4.040584 GGCCCGAATAGATCCCCTATATTC 59.959 50.000 0.00 0.00 37.09 1.75
173 174 3.974642 GGCCCGAATAGATCCCCTATATT 59.025 47.826 0.00 0.00 37.09 1.28
174 175 3.588569 GGCCCGAATAGATCCCCTATAT 58.411 50.000 0.00 0.00 37.09 0.86
175 176 2.688817 CGGCCCGAATAGATCCCCTATA 60.689 54.545 0.00 0.00 37.09 1.31
176 177 1.880941 GGCCCGAATAGATCCCCTAT 58.119 55.000 0.00 0.00 39.70 2.57
177 178 0.613853 CGGCCCGAATAGATCCCCTA 60.614 60.000 0.00 0.00 0.00 3.53
178 179 1.913762 CGGCCCGAATAGATCCCCT 60.914 63.158 0.00 0.00 0.00 4.79
179 180 2.663196 CGGCCCGAATAGATCCCC 59.337 66.667 0.00 0.00 0.00 4.81
180 181 2.663196 CCGGCCCGAATAGATCCC 59.337 66.667 3.71 0.00 0.00 3.85
181 182 2.047179 GCCGGCCCGAATAGATCC 60.047 66.667 18.11 0.00 0.00 3.36
182 183 0.534203 TTTGCCGGCCCGAATAGATC 60.534 55.000 26.77 0.00 0.00 2.75
183 184 0.110486 ATTTGCCGGCCCGAATAGAT 59.890 50.000 26.77 0.99 0.00 1.98
184 185 0.106918 AATTTGCCGGCCCGAATAGA 60.107 50.000 26.77 0.00 0.00 1.98
185 186 0.030638 CAATTTGCCGGCCCGAATAG 59.969 55.000 26.77 3.81 0.00 1.73
186 187 1.388065 CCAATTTGCCGGCCCGAATA 61.388 55.000 26.77 0.00 0.00 1.75
187 188 2.720134 CCAATTTGCCGGCCCGAAT 61.720 57.895 26.77 18.23 0.00 3.34
188 189 3.377759 CCAATTTGCCGGCCCGAA 61.378 61.111 26.77 16.64 0.00 4.30
189 190 4.669809 ACCAATTTGCCGGCCCGA 62.670 61.111 26.77 10.29 0.00 5.14
190 191 4.433877 CACCAATTTGCCGGCCCG 62.434 66.667 26.77 7.36 0.00 6.13
191 192 2.994417 TCACCAATTTGCCGGCCC 60.994 61.111 26.77 0.00 0.00 5.80
192 193 2.212900 GACTCACCAATTTGCCGGCC 62.213 60.000 26.77 6.44 0.00 6.13
193 194 1.212751 GACTCACCAATTTGCCGGC 59.787 57.895 22.73 22.73 0.00 6.13
194 195 0.893270 TGGACTCACCAATTTGCCGG 60.893 55.000 0.00 0.00 46.75 6.13
195 196 2.639970 TGGACTCACCAATTTGCCG 58.360 52.632 0.00 0.00 46.75 5.69
204 205 2.254546 TTGTCATGTGTGGACTCACC 57.745 50.000 0.00 0.00 42.98 4.02
205 206 4.836125 ATTTTGTCATGTGTGGACTCAC 57.164 40.909 0.00 0.00 43.87 3.51
206 207 4.644234 ACAATTTTGTCATGTGTGGACTCA 59.356 37.500 0.00 0.00 36.50 3.41
207 208 5.186996 ACAATTTTGTCATGTGTGGACTC 57.813 39.130 0.00 0.00 36.50 3.36
208 209 5.350633 CAACAATTTTGTCATGTGTGGACT 58.649 37.500 0.00 0.00 41.31 3.85
209 210 4.025813 GCAACAATTTTGTCATGTGTGGAC 60.026 41.667 0.00 0.00 41.31 4.02
210 211 4.118410 GCAACAATTTTGTCATGTGTGGA 58.882 39.130 0.00 0.00 41.31 4.02
211 212 3.060406 CGCAACAATTTTGTCATGTGTGG 60.060 43.478 0.00 0.00 41.31 4.17
212 213 3.602038 GCGCAACAATTTTGTCATGTGTG 60.602 43.478 0.30 6.38 41.31 3.82
213 214 2.539274 GCGCAACAATTTTGTCATGTGT 59.461 40.909 0.30 0.00 41.31 3.72
214 215 2.408738 CGCGCAACAATTTTGTCATGTG 60.409 45.455 8.75 1.02 41.31 3.21
215 216 1.786004 CGCGCAACAATTTTGTCATGT 59.214 42.857 8.75 0.00 41.31 3.21
216 217 1.786004 ACGCGCAACAATTTTGTCATG 59.214 42.857 5.73 0.00 41.31 3.07
217 218 2.132740 ACGCGCAACAATTTTGTCAT 57.867 40.000 5.73 0.00 41.31 3.06
218 219 2.376956 GTACGCGCAACAATTTTGTCA 58.623 42.857 5.73 0.00 41.31 3.58
219 220 1.377505 CGTACGCGCAACAATTTTGTC 59.622 47.619 5.73 0.00 41.31 3.18
220 221 1.390820 CGTACGCGCAACAATTTTGT 58.609 45.000 5.73 0.00 44.72 2.83
221 222 0.700226 CCGTACGCGCAACAATTTTG 59.300 50.000 10.49 0.00 36.67 2.44
222 223 0.386226 CCCGTACGCGCAACAATTTT 60.386 50.000 10.49 0.00 36.67 1.82
223 224 1.208103 CCCGTACGCGCAACAATTT 59.792 52.632 10.49 0.00 36.67 1.82
224 225 2.682876 CCCCGTACGCGCAACAATT 61.683 57.895 10.49 0.00 36.67 2.32
225 226 3.122323 CCCCGTACGCGCAACAAT 61.122 61.111 10.49 0.00 36.67 2.71
226 227 4.605634 ACCCCGTACGCGCAACAA 62.606 61.111 10.49 0.00 36.67 2.83
227 228 4.605634 AACCCCGTACGCGCAACA 62.606 61.111 10.49 0.00 36.67 3.33
228 229 3.348205 AAACCCCGTACGCGCAAC 61.348 61.111 10.49 3.62 36.67 4.17
229 230 3.347405 CAAACCCCGTACGCGCAA 61.347 61.111 10.49 0.00 36.67 4.85
230 231 4.605634 ACAAACCCCGTACGCGCA 62.606 61.111 10.49 0.00 36.67 6.09
231 232 3.781162 GACAAACCCCGTACGCGC 61.781 66.667 10.49 0.00 36.67 6.86
232 233 3.472298 CGACAAACCCCGTACGCG 61.472 66.667 10.49 3.53 37.95 6.01
233 234 2.049248 TCGACAAACCCCGTACGC 60.049 61.111 10.49 0.00 0.00 4.42
234 235 2.090524 GCTCGACAAACCCCGTACG 61.091 63.158 8.69 8.69 0.00 3.67
235 236 1.739196 GGCTCGACAAACCCCGTAC 60.739 63.158 0.00 0.00 0.00 3.67
236 237 2.658422 GGCTCGACAAACCCCGTA 59.342 61.111 0.00 0.00 0.00 4.02
237 238 4.324991 GGGCTCGACAAACCCCGT 62.325 66.667 0.00 0.00 37.70 5.28
238 239 3.835790 TTGGGCTCGACAAACCCCG 62.836 63.158 5.79 0.00 43.54 5.73
239 240 0.898326 ATTTGGGCTCGACAAACCCC 60.898 55.000 2.18 0.00 43.54 4.95
240 241 0.966179 AATTTGGGCTCGACAAACCC 59.034 50.000 2.18 2.02 44.52 4.11
241 242 1.336795 CCAATTTGGGCTCGACAAACC 60.337 52.381 7.60 0.00 40.25 3.27
242 243 1.339929 ACCAATTTGGGCTCGACAAAC 59.660 47.619 19.39 0.00 43.37 2.93
243 244 1.339610 CACCAATTTGGGCTCGACAAA 59.660 47.619 19.39 2.59 43.37 2.83
244 245 0.958091 CACCAATTTGGGCTCGACAA 59.042 50.000 19.39 0.00 43.37 3.18
245 246 0.109532 TCACCAATTTGGGCTCGACA 59.890 50.000 19.39 0.00 43.37 4.35
246 247 0.804989 CTCACCAATTTGGGCTCGAC 59.195 55.000 19.39 0.00 43.37 4.20
247 248 0.400213 ACTCACCAATTTGGGCTCGA 59.600 50.000 19.39 9.11 43.37 4.04
248 249 0.804989 GACTCACCAATTTGGGCTCG 59.195 55.000 19.39 7.41 43.37 5.03
249 250 1.815003 CTGACTCACCAATTTGGGCTC 59.185 52.381 19.39 8.28 43.37 4.70
250 251 1.145738 ACTGACTCACCAATTTGGGCT 59.854 47.619 19.39 0.00 43.37 5.19
251 252 1.270550 CACTGACTCACCAATTTGGGC 59.729 52.381 19.39 4.39 43.37 5.36
252 253 1.270550 GCACTGACTCACCAATTTGGG 59.729 52.381 19.39 8.68 43.37 4.12
253 254 1.270550 GGCACTGACTCACCAATTTGG 59.729 52.381 14.02 14.02 45.02 3.28
254 255 1.955778 TGGCACTGACTCACCAATTTG 59.044 47.619 0.00 0.00 0.00 2.32
255 256 2.363306 TGGCACTGACTCACCAATTT 57.637 45.000 0.00 0.00 0.00 1.82
256 257 2.233271 CTTGGCACTGACTCACCAATT 58.767 47.619 0.00 0.00 41.17 2.32
257 258 1.546323 CCTTGGCACTGACTCACCAAT 60.546 52.381 0.00 0.00 41.17 3.16
258 259 0.179020 CCTTGGCACTGACTCACCAA 60.179 55.000 0.00 0.00 39.81 3.67
259 260 1.053835 TCCTTGGCACTGACTCACCA 61.054 55.000 0.00 0.00 0.00 4.17
260 261 0.326264 ATCCTTGGCACTGACTCACC 59.674 55.000 0.00 0.00 0.00 4.02
261 262 2.898705 CTATCCTTGGCACTGACTCAC 58.101 52.381 0.00 0.00 0.00 3.51
262 263 1.208052 GCTATCCTTGGCACTGACTCA 59.792 52.381 0.00 0.00 0.00 3.41
263 264 1.804372 CGCTATCCTTGGCACTGACTC 60.804 57.143 0.00 0.00 0.00 3.36
264 265 0.176680 CGCTATCCTTGGCACTGACT 59.823 55.000 0.00 0.00 0.00 3.41
265 266 1.432270 GCGCTATCCTTGGCACTGAC 61.432 60.000 0.00 0.00 0.00 3.51
266 267 1.153369 GCGCTATCCTTGGCACTGA 60.153 57.895 0.00 0.00 0.00 3.41
267 268 2.528743 CGCGCTATCCTTGGCACTG 61.529 63.158 5.56 0.00 0.00 3.66
268 269 2.202932 CGCGCTATCCTTGGCACT 60.203 61.111 5.56 0.00 0.00 4.40
269 270 2.511600 ACGCGCTATCCTTGGCAC 60.512 61.111 5.73 0.00 0.00 5.01
270 271 2.202878 GACGCGCTATCCTTGGCA 60.203 61.111 5.73 0.00 0.00 4.92
271 272 3.330853 CGACGCGCTATCCTTGGC 61.331 66.667 5.73 0.00 0.00 4.52
272 273 2.421877 ATCCGACGCGCTATCCTTGG 62.422 60.000 5.73 0.00 0.00 3.61
273 274 1.004277 GATCCGACGCGCTATCCTTG 61.004 60.000 5.73 0.00 0.00 3.61
274 275 1.173444 AGATCCGACGCGCTATCCTT 61.173 55.000 5.73 0.00 0.00 3.36
275 276 1.601197 AGATCCGACGCGCTATCCT 60.601 57.895 5.73 0.00 0.00 3.24
276 277 1.442857 CAGATCCGACGCGCTATCC 60.443 63.158 5.73 0.00 0.00 2.59
277 278 2.083522 GCAGATCCGACGCGCTATC 61.084 63.158 5.73 4.12 0.00 2.08
278 279 2.049985 GCAGATCCGACGCGCTAT 60.050 61.111 5.73 0.00 0.00 2.97
279 280 4.266070 GGCAGATCCGACGCGCTA 62.266 66.667 5.73 0.00 0.00 4.26
282 283 3.490793 ATCTGGCAGATCCGACGCG 62.491 63.158 24.01 3.53 37.80 6.01
283 284 1.953138 CATCTGGCAGATCCGACGC 60.953 63.158 26.62 0.00 31.32 5.19
284 285 0.596083 GACATCTGGCAGATCCGACG 60.596 60.000 26.62 17.19 31.32 5.12
285 286 0.596083 CGACATCTGGCAGATCCGAC 60.596 60.000 29.82 19.21 31.32 4.79
286 287 1.735973 CGACATCTGGCAGATCCGA 59.264 57.895 29.82 9.02 31.32 4.55
287 288 1.953138 GCGACATCTGGCAGATCCG 60.953 63.158 29.51 29.51 31.32 4.18
288 289 1.144716 TGCGACATCTGGCAGATCC 59.855 57.895 26.62 19.08 31.32 3.36
289 290 0.460811 TGTGCGACATCTGGCAGATC 60.461 55.000 26.62 16.67 40.32 2.75
290 291 0.742281 GTGTGCGACATCTGGCAGAT 60.742 55.000 24.01 24.01 40.32 2.90
291 292 1.374631 GTGTGCGACATCTGGCAGA 60.375 57.895 21.19 21.19 40.32 4.26
292 293 1.668793 TGTGTGCGACATCTGGCAG 60.669 57.895 8.58 8.58 40.32 4.85
293 294 1.960763 GTGTGTGCGACATCTGGCA 60.961 57.895 0.00 0.00 36.78 4.92
294 295 1.300971 ATGTGTGTGCGACATCTGGC 61.301 55.000 0.00 0.00 36.78 4.85
295 296 0.445043 CATGTGTGTGCGACATCTGG 59.555 55.000 0.00 0.00 36.78 3.86
296 297 1.127397 GTCATGTGTGTGCGACATCTG 59.873 52.381 0.00 0.00 36.78 2.90
297 298 1.270252 TGTCATGTGTGTGCGACATCT 60.270 47.619 0.00 0.00 36.78 2.90
298 299 1.147473 TGTCATGTGTGTGCGACATC 58.853 50.000 0.00 0.00 36.78 3.06
299 300 1.592064 TTGTCATGTGTGTGCGACAT 58.408 45.000 0.00 0.00 38.14 3.06
300 301 1.373570 TTTGTCATGTGTGTGCGACA 58.626 45.000 0.00 0.00 36.63 4.35
301 302 2.108700 GTTTTGTCATGTGTGTGCGAC 58.891 47.619 0.00 0.00 0.00 5.19
302 303 2.013400 AGTTTTGTCATGTGTGTGCGA 58.987 42.857 0.00 0.00 0.00 5.10
303 304 2.110990 CAGTTTTGTCATGTGTGTGCG 58.889 47.619 0.00 0.00 0.00 5.34
304 305 3.149436 ACAGTTTTGTCATGTGTGTGC 57.851 42.857 0.00 0.00 29.46 4.57
305 306 3.304026 GCAACAGTTTTGTCATGTGTGTG 59.696 43.478 0.00 0.00 36.23 3.82
306 307 3.510719 GCAACAGTTTTGTCATGTGTGT 58.489 40.909 0.00 0.00 36.23 3.72
307 308 2.531103 CGCAACAGTTTTGTCATGTGTG 59.469 45.455 0.00 0.00 36.23 3.82
308 309 2.796304 CGCAACAGTTTTGTCATGTGT 58.204 42.857 0.00 0.00 36.23 3.72
309 310 1.518102 GCGCAACAGTTTTGTCATGTG 59.482 47.619 0.30 0.00 36.23 3.21
310 311 1.838913 GCGCAACAGTTTTGTCATGT 58.161 45.000 0.30 0.00 36.23 3.21
311 312 0.771756 CGCGCAACAGTTTTGTCATG 59.228 50.000 8.75 0.00 36.23 3.07
312 313 0.380378 ACGCGCAACAGTTTTGTCAT 59.620 45.000 5.73 0.00 36.23 3.06
313 314 0.247894 GACGCGCAACAGTTTTGTCA 60.248 50.000 5.73 0.00 36.23 3.58
314 315 0.928451 GGACGCGCAACAGTTTTGTC 60.928 55.000 5.73 2.69 36.23 3.18
315 316 1.063488 GGACGCGCAACAGTTTTGT 59.937 52.632 5.73 0.00 39.87 2.83
316 317 2.003443 CGGACGCGCAACAGTTTTG 61.003 57.895 5.73 0.00 0.00 2.44
317 318 2.326550 CGGACGCGCAACAGTTTT 59.673 55.556 5.73 0.00 0.00 2.43
318 319 3.645975 CCGGACGCGCAACAGTTT 61.646 61.111 5.73 0.00 0.00 2.66
328 329 3.703127 AAGAGGAACCCCGGACGC 61.703 66.667 0.73 0.00 37.58 5.19
329 330 1.252904 TACAAGAGGAACCCCGGACG 61.253 60.000 0.73 0.00 37.58 4.79
330 331 1.134491 CATACAAGAGGAACCCCGGAC 60.134 57.143 0.73 0.00 37.58 4.79
331 332 1.200519 CATACAAGAGGAACCCCGGA 58.799 55.000 0.73 0.00 37.58 5.14
332 333 0.180406 CCATACAAGAGGAACCCCGG 59.820 60.000 0.00 0.00 37.58 5.73
333 334 1.200519 TCCATACAAGAGGAACCCCG 58.799 55.000 0.00 0.00 37.58 5.73
334 335 2.224305 CGATCCATACAAGAGGAACCCC 60.224 54.545 0.00 0.00 37.48 4.95
335 336 2.224305 CCGATCCATACAAGAGGAACCC 60.224 54.545 0.00 0.00 37.48 4.11
336 337 2.698797 TCCGATCCATACAAGAGGAACC 59.301 50.000 0.00 0.00 37.48 3.62
337 338 4.310769 CATCCGATCCATACAAGAGGAAC 58.689 47.826 0.00 0.00 37.48 3.62
338 339 3.244215 GCATCCGATCCATACAAGAGGAA 60.244 47.826 0.00 0.00 37.48 3.36
339 340 2.300152 GCATCCGATCCATACAAGAGGA 59.700 50.000 0.00 0.00 38.50 3.71
340 341 2.693069 GCATCCGATCCATACAAGAGG 58.307 52.381 0.00 0.00 0.00 3.69
341 342 2.288457 ACGCATCCGATCCATACAAGAG 60.288 50.000 0.00 0.00 38.29 2.85
342 343 1.686587 ACGCATCCGATCCATACAAGA 59.313 47.619 0.00 0.00 38.29 3.02
343 344 1.794701 CACGCATCCGATCCATACAAG 59.205 52.381 0.00 0.00 38.29 3.16
344 345 1.540146 CCACGCATCCGATCCATACAA 60.540 52.381 0.00 0.00 38.29 2.41
345 346 0.033366 CCACGCATCCGATCCATACA 59.967 55.000 0.00 0.00 38.29 2.29
346 347 0.317160 TCCACGCATCCGATCCATAC 59.683 55.000 0.00 0.00 38.29 2.39
347 348 0.603065 CTCCACGCATCCGATCCATA 59.397 55.000 0.00 0.00 38.29 2.74
348 349 1.115326 TCTCCACGCATCCGATCCAT 61.115 55.000 0.00 0.00 38.29 3.41
349 350 1.115326 ATCTCCACGCATCCGATCCA 61.115 55.000 0.00 0.00 38.29 3.41
350 351 0.034059 AATCTCCACGCATCCGATCC 59.966 55.000 0.00 0.00 38.29 3.36
351 352 1.528586 CAAATCTCCACGCATCCGATC 59.471 52.381 0.00 0.00 38.29 3.69
352 353 1.134401 ACAAATCTCCACGCATCCGAT 60.134 47.619 0.00 0.00 38.29 4.18
353 354 0.249120 ACAAATCTCCACGCATCCGA 59.751 50.000 0.00 0.00 38.29 4.55
354 355 0.374758 CACAAATCTCCACGCATCCG 59.625 55.000 0.00 0.00 41.14 4.18
355 356 1.398390 GTCACAAATCTCCACGCATCC 59.602 52.381 0.00 0.00 0.00 3.51
356 357 2.350522 AGTCACAAATCTCCACGCATC 58.649 47.619 0.00 0.00 0.00 3.91
357 358 2.479566 AGTCACAAATCTCCACGCAT 57.520 45.000 0.00 0.00 0.00 4.73
358 359 2.254546 AAGTCACAAATCTCCACGCA 57.745 45.000 0.00 0.00 0.00 5.24
359 360 2.548057 TGAAAGTCACAAATCTCCACGC 59.452 45.455 0.00 0.00 0.00 5.34
360 361 4.058124 TCTGAAAGTCACAAATCTCCACG 58.942 43.478 0.00 0.00 33.76 4.94
361 362 5.163913 CGATCTGAAAGTCACAAATCTCCAC 60.164 44.000 0.00 0.00 33.76 4.02
362 363 4.931601 CGATCTGAAAGTCACAAATCTCCA 59.068 41.667 0.00 0.00 33.76 3.86
363 364 4.331168 CCGATCTGAAAGTCACAAATCTCC 59.669 45.833 0.00 0.00 33.76 3.71
364 365 5.062809 GTCCGATCTGAAAGTCACAAATCTC 59.937 44.000 0.00 0.00 33.76 2.75
365 366 4.932200 GTCCGATCTGAAAGTCACAAATCT 59.068 41.667 0.00 0.00 33.76 2.40
366 367 4.201628 CGTCCGATCTGAAAGTCACAAATC 60.202 45.833 0.00 0.00 33.76 2.17
367 368 3.679980 CGTCCGATCTGAAAGTCACAAAT 59.320 43.478 0.00 0.00 33.76 2.32
368 369 3.057019 CGTCCGATCTGAAAGTCACAAA 58.943 45.455 0.00 0.00 33.76 2.83
369 370 2.609491 CCGTCCGATCTGAAAGTCACAA 60.609 50.000 0.00 0.00 33.76 3.33
370 371 1.067846 CCGTCCGATCTGAAAGTCACA 60.068 52.381 0.00 0.00 33.76 3.58
371 372 1.630148 CCGTCCGATCTGAAAGTCAC 58.370 55.000 0.00 0.00 33.76 3.67
372 373 0.108804 GCCGTCCGATCTGAAAGTCA 60.109 55.000 0.00 0.00 33.76 3.41
373 374 0.173708 AGCCGTCCGATCTGAAAGTC 59.826 55.000 0.00 0.00 33.76 3.01
374 375 0.108615 CAGCCGTCCGATCTGAAAGT 60.109 55.000 0.00 0.00 33.76 2.66
375 376 1.424493 GCAGCCGTCCGATCTGAAAG 61.424 60.000 11.26 0.00 0.00 2.62
376 377 1.447838 GCAGCCGTCCGATCTGAAA 60.448 57.895 11.26 0.00 0.00 2.69
377 378 2.184322 GCAGCCGTCCGATCTGAA 59.816 61.111 11.26 0.00 0.00 3.02
378 379 4.193334 CGCAGCCGTCCGATCTGA 62.193 66.667 11.26 0.00 0.00 3.27
381 382 4.933064 CTCCGCAGCCGTCCGATC 62.933 72.222 0.00 0.00 0.00 3.69
400 401 2.372040 TATTCCAACCCGATCGGCCG 62.372 60.000 29.12 22.12 33.26 6.13
401 402 0.036306 ATATTCCAACCCGATCGGCC 59.964 55.000 29.12 0.00 33.26 6.13
402 403 1.270625 TGATATTCCAACCCGATCGGC 60.271 52.381 29.12 11.18 33.26 5.54
403 404 2.037251 ACTGATATTCCAACCCGATCGG 59.963 50.000 27.65 27.65 37.81 4.18
404 405 3.386768 ACTGATATTCCAACCCGATCG 57.613 47.619 8.51 8.51 0.00 3.69
405 406 5.927115 GTCTTACTGATATTCCAACCCGATC 59.073 44.000 0.00 0.00 0.00 3.69
406 407 5.221661 GGTCTTACTGATATTCCAACCCGAT 60.222 44.000 0.00 0.00 0.00 4.18
407 408 4.100498 GGTCTTACTGATATTCCAACCCGA 59.900 45.833 0.00 0.00 0.00 5.14
408 409 4.141801 TGGTCTTACTGATATTCCAACCCG 60.142 45.833 0.00 0.00 0.00 5.28
409 410 5.123936 GTGGTCTTACTGATATTCCAACCC 58.876 45.833 0.00 0.00 0.00 4.11
410 411 5.741011 TGTGGTCTTACTGATATTCCAACC 58.259 41.667 0.00 0.00 0.00 3.77
411 412 7.336931 ACAATGTGGTCTTACTGATATTCCAAC 59.663 37.037 0.00 0.00 0.00 3.77
412 413 7.402054 ACAATGTGGTCTTACTGATATTCCAA 58.598 34.615 0.00 0.00 0.00 3.53
413 414 6.957631 ACAATGTGGTCTTACTGATATTCCA 58.042 36.000 0.00 0.00 0.00 3.53
414 415 7.865706 AACAATGTGGTCTTACTGATATTCC 57.134 36.000 0.00 0.00 0.00 3.01
415 416 8.946085 TCAAACAATGTGGTCTTACTGATATTC 58.054 33.333 0.00 0.00 0.00 1.75
416 417 8.730680 GTCAAACAATGTGGTCTTACTGATATT 58.269 33.333 0.00 0.00 0.00 1.28
417 418 7.064609 CGTCAAACAATGTGGTCTTACTGATAT 59.935 37.037 0.00 0.00 0.00 1.63
418 419 6.367695 CGTCAAACAATGTGGTCTTACTGATA 59.632 38.462 0.00 0.00 0.00 2.15
419 420 5.179368 CGTCAAACAATGTGGTCTTACTGAT 59.821 40.000 0.00 0.00 0.00 2.90
420 421 4.509970 CGTCAAACAATGTGGTCTTACTGA 59.490 41.667 0.00 0.00 0.00 3.41
428 429 0.816018 TCGGCGTCAAACAATGTGGT 60.816 50.000 6.85 0.00 0.00 4.16
429 430 0.385473 GTCGGCGTCAAACAATGTGG 60.385 55.000 6.85 0.00 0.00 4.17
432 433 0.110238 CCTGTCGGCGTCAAACAATG 60.110 55.000 6.85 0.00 0.00 2.82
511 512 6.656003 ACGGCGTTGCTTTTATTTATCTATC 58.344 36.000 6.77 0.00 0.00 2.08
567 577 3.996150 TTCCCGTTATATCGAGTGGTC 57.004 47.619 4.77 0.00 0.00 4.02
592 602 2.004733 GACGTCGTAAAATGGAAGGGG 58.995 52.381 0.00 0.00 0.00 4.79
828 882 3.537874 CGGGGATCTGGACGGGAC 61.538 72.222 0.00 0.00 0.00 4.46
977 1050 2.027625 CCTCCTCAACCACGAACGC 61.028 63.158 0.00 0.00 0.00 4.84
978 1051 0.388649 CTCCTCCTCAACCACGAACG 60.389 60.000 0.00 0.00 0.00 3.95
1158 1256 4.467107 AGTCCTCCTCCGGCTCCC 62.467 72.222 0.00 0.00 0.00 4.30
1164 1262 4.824515 AGGCCGAGTCCTCCTCCG 62.825 72.222 0.00 0.00 36.82 4.63
1260 1358 1.671379 GAACCCCGTCTTGAGCACC 60.671 63.158 0.00 0.00 0.00 5.01
1334 1436 4.266962 CGGAGCAGAGGAGGATGA 57.733 61.111 0.00 0.00 0.00 2.92
1358 1460 1.805428 GAGCTGGCGAGAGGGAGATC 61.805 65.000 0.00 0.00 0.00 2.75
1359 1461 1.832167 GAGCTGGCGAGAGGGAGAT 60.832 63.158 0.00 0.00 0.00 2.75
1360 1462 2.441164 GAGCTGGCGAGAGGGAGA 60.441 66.667 0.00 0.00 0.00 3.71
1394 1499 7.620888 ACCAGATCAAAACCTCCATTGATTTAT 59.379 33.333 0.00 0.00 44.15 1.40
1395 1500 6.953520 ACCAGATCAAAACCTCCATTGATTTA 59.046 34.615 0.00 0.00 44.15 1.40
1402 1507 2.827921 GCAACCAGATCAAAACCTCCAT 59.172 45.455 0.00 0.00 0.00 3.41
1434 1540 5.462398 GCGTCTTATTGTATCTACCCAACAG 59.538 44.000 0.00 0.00 0.00 3.16
1618 1724 2.362369 CGTGGAGCAGGAGGATGGT 61.362 63.158 0.00 0.00 0.00 3.55
1660 1769 0.035630 ACAGAGAGCCATGGAGCAAC 60.036 55.000 18.40 0.00 34.23 4.17
1667 1776 1.817357 TGAGCAAACAGAGAGCCATG 58.183 50.000 0.00 0.00 0.00 3.66
1676 1785 1.402456 GCCAGAAGCATGAGCAAACAG 60.402 52.381 0.00 0.00 45.49 3.16
1678 1787 0.108945 GGCCAGAAGCATGAGCAAAC 60.109 55.000 0.00 0.00 46.50 2.93
1737 1850 2.672961 TGCTCAGGTTAATGTCGAGG 57.327 50.000 0.00 0.00 0.00 4.63
1746 1859 0.388134 GAGACGCGTTGCTCAGGTTA 60.388 55.000 15.53 0.00 0.00 2.85
1806 1919 2.227865 TGGACTAAATCACTTTTGCGGC 59.772 45.455 0.00 0.00 0.00 6.53
1843 1956 1.827344 ACTCGATTCAGGATGCAGTGA 59.173 47.619 0.00 0.00 34.76 3.41
1846 1959 2.897436 TGAACTCGATTCAGGATGCAG 58.103 47.619 0.00 0.00 42.62 4.41
1893 2006 3.717400 TGCCGATTTACACTGCAAAAA 57.283 38.095 0.00 0.00 0.00 1.94
1913 2026 6.655078 AATAGCAAAAGGAATATTGGCGAT 57.345 33.333 0.00 0.00 0.00 4.58
1943 2056 1.148310 ACAAGACTCACCGAAATGCG 58.852 50.000 0.00 0.00 40.47 4.73
1980 2101 0.737219 CAGCACTAGAAAGCCATGGC 59.263 55.000 30.12 30.12 42.33 4.40
1993 2114 1.237285 CCAGCTAAAACCGCAGCACT 61.237 55.000 0.00 0.00 40.36 4.40
2025 2146 4.319477 CCACAACTAACTGTCAATGGAACG 60.319 45.833 0.00 0.00 30.66 3.95
2098 2259 8.630054 AGTAAAGTTATGTTGCCAGTTAATGA 57.370 30.769 0.00 0.00 0.00 2.57
2191 2352 1.074244 GTACTGGCTTAACCCACCCAA 59.926 52.381 0.00 0.00 37.83 4.12
2213 2374 4.665212 CGTGAACGAACTAGCAATACCTA 58.335 43.478 0.00 0.00 43.02 3.08
2234 2395 0.249405 AACACAGTTTTGGCCATGCG 60.249 50.000 6.09 0.00 0.00 4.73
2314 2493 2.160219 CGGGCATGATTATTCACCATCG 59.840 50.000 0.00 0.00 33.85 3.84
2332 2511 5.120399 TGTTATAGAATTAAGTGGTGCGGG 58.880 41.667 0.00 0.00 0.00 6.13
2421 2600 9.807649 AGCAACTTTTAGAGCCATATAAAATTG 57.192 29.630 0.00 0.00 33.04 2.32
2443 2622 2.642807 AGCCTAGTAAACCAGGAAGCAA 59.357 45.455 0.00 0.00 33.42 3.91
2447 2626 2.838202 CTCCAGCCTAGTAAACCAGGAA 59.162 50.000 0.00 0.00 33.42 3.36
2449 2628 2.432510 CTCTCCAGCCTAGTAAACCAGG 59.567 54.545 0.00 0.00 34.85 4.45
2585 2764 7.148171 GCTGGCTGATACTGAAGAAACTATTTT 60.148 37.037 0.00 0.00 0.00 1.82
2671 2850 6.455360 ACATGATGTGGCTATAAACCAAAG 57.545 37.500 0.00 0.00 39.39 2.77
2717 2896 2.605257 AGTAGTGTACTTGGCCACTGA 58.395 47.619 3.88 0.00 41.77 3.41
2967 3151 4.629065 CGAGACAATCAAGTCGCTAAAAC 58.371 43.478 0.00 0.00 43.24 2.43
3050 3235 5.536497 AATACAACCCCAGATCCTTTCTT 57.464 39.130 0.00 0.00 29.93 2.52
3144 3332 4.715534 TTGGAGGACAACAATTGAGGTA 57.284 40.909 13.59 0.00 33.18 3.08
3630 3853 6.925610 TGCAAGAACCAAGCATATTAGTAG 57.074 37.500 0.00 0.00 32.55 2.57
3631 3854 7.880160 ATTGCAAGAACCAAGCATATTAGTA 57.120 32.000 4.94 0.00 38.19 1.82
3632 3855 6.780457 ATTGCAAGAACCAAGCATATTAGT 57.220 33.333 4.94 0.00 38.19 2.24
3819 4072 9.205513 ACTTAAGATCAAAATCATAAAGCCCAT 57.794 29.630 10.09 0.00 34.07 4.00
3999 4255 5.430089 ACTCCTAGTAGCCAAATCAGGATTT 59.570 40.000 1.50 1.50 41.33 2.17
4130 4386 2.619931 TCACTCCAAGGATCCAACAGA 58.380 47.619 15.82 4.09 0.00 3.41
4608 4864 7.761409 TGTTCATGAGTTATCAATTGCCTAAC 58.239 34.615 16.70 16.70 39.39 2.34
4782 5038 6.368516 CACAAGAAATGTTGTTGGACTTTTGT 59.631 34.615 3.33 0.00 41.46 2.83
4796 5052 5.106396 GCAGAGAAGCATACACAAGAAATGT 60.106 40.000 0.00 0.00 45.34 2.71
4848 5104 8.944029 GCTATGAATGATATCAAGTGCAGTATT 58.056 33.333 9.99 0.00 32.06 1.89
4864 5120 8.853126 CAATATTCTCTTTTGGGCTATGAATGA 58.147 33.333 0.00 0.00 0.00 2.57
4865 5121 8.636213 ACAATATTCTCTTTTGGGCTATGAATG 58.364 33.333 0.00 0.00 0.00 2.67
4866 5122 8.773033 ACAATATTCTCTTTTGGGCTATGAAT 57.227 30.769 0.00 0.00 0.00 2.57
4867 5123 8.593945 AACAATATTCTCTTTTGGGCTATGAA 57.406 30.769 0.00 0.00 0.00 2.57
4991 5247 8.306038 CCTTTCAACCAAGTAAATTCATCATGA 58.694 33.333 0.00 0.00 0.00 3.07
5096 5352 7.254455 CCCAAGAAGAATATGTAAGCTGTAACG 60.254 40.741 0.00 0.00 0.00 3.18
5125 5383 1.909141 CTTGCCTCAGCTCAGTTGCG 61.909 60.000 0.00 0.00 40.80 4.85
5267 5569 5.638596 AATGAACTTTGGGTCCGAATTAC 57.361 39.130 0.00 0.00 0.00 1.89
5392 5698 5.499139 TCAAAGACTGACAATTTGTGGAC 57.501 39.130 6.80 0.82 35.80 4.02
5474 5780 2.228545 TGGCATGGGCTAAACAATGA 57.771 45.000 0.00 0.00 40.87 2.57
5567 5874 5.816449 TGAACAATGTAGTATGCCACATG 57.184 39.130 0.00 0.00 35.59 3.21
5702 6010 9.828691 TCATCTTCCAGGTCATCTAGAATAATA 57.171 33.333 0.00 0.00 0.00 0.98
5862 6173 4.481368 AGTGGCTTATAAACACGGATGA 57.519 40.909 11.95 0.00 39.95 2.92
6186 6502 3.241530 TCCACAACTGCGGCTCCT 61.242 61.111 0.00 0.00 0.00 3.69
6282 6598 4.067896 TGACATTCACCTTCTTCTTGCTC 58.932 43.478 0.00 0.00 0.00 4.26
6295 6611 7.695618 GTCTATTTTTCATGCTCTGACATTCAC 59.304 37.037 0.00 0.00 32.17 3.18
6508 6828 0.033366 GGGAACGGCACAAAAATGCT 59.967 50.000 0.00 0.00 45.38 3.79
6606 6926 9.401058 AGAAAACCTCCATGAGTATTATTTCAG 57.599 33.333 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.