Multiple sequence alignment - TraesCS7D01G104900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G104900 chr7D 100.000 7103 0 0 1 7103 63638888 63645990 0.000000e+00 13117.0
1 TraesCS7D01G104900 chr7D 81.864 2167 301 45 4075 6214 63608116 63610217 0.000000e+00 1740.0
2 TraesCS7D01G104900 chr7D 84.501 471 43 15 3358 3799 124164342 124164811 8.460000e-119 438.0
3 TraesCS7D01G104900 chr7D 82.007 289 45 6 420 703 169990687 169990973 9.210000e-59 239.0
4 TraesCS7D01G104900 chr7D 87.047 193 20 3 3330 3519 156225063 156224873 5.580000e-51 213.0
5 TraesCS7D01G104900 chr7D 86.550 171 22 1 4192 4362 63601471 63601640 3.380000e-43 187.0
6 TraesCS7D01G104900 chr7D 85.795 176 22 3 974 1148 63564844 63564671 4.380000e-42 183.0
7 TraesCS7D01G104900 chr7D 100.000 80 0 0 2536 2615 63606372 63606451 1.600000e-31 148.0
8 TraesCS7D01G104900 chr7D 94.318 88 2 2 2522 2608 63562108 63562023 1.610000e-26 132.0
9 TraesCS7D01G104900 chr7D 87.143 70 3 5 3849 3918 63606770 63606833 2.750000e-09 75.0
10 TraesCS7D01G104900 chr7B 92.520 2754 169 24 4075 6816 4147712 4150440 0.000000e+00 3910.0
11 TraesCS7D01G104900 chr7B 90.614 1385 85 21 1588 2949 4146086 4147448 0.000000e+00 1796.0
12 TraesCS7D01G104900 chr7B 92.411 1186 76 10 222 1400 4144909 4146087 0.000000e+00 1679.0
13 TraesCS7D01G104900 chr7B 80.700 1342 206 34 4821 6133 4098208 4099525 0.000000e+00 994.0
14 TraesCS7D01G104900 chr7B 85.070 710 75 17 4090 4793 4097530 4098214 0.000000e+00 695.0
15 TraesCS7D01G104900 chr7B 82.658 444 53 13 946 1381 4093761 4094188 8.700000e-99 372.0
16 TraesCS7D01G104900 chr7B 92.827 237 14 2 3847 4081 4147446 4147681 2.450000e-89 340.0
17 TraesCS7D01G104900 chr7B 88.832 197 22 0 5391 5587 4011953 4012149 7.120000e-60 243.0
18 TraesCS7D01G104900 chr7B 87.442 215 21 3 938 1149 4087396 4087607 7.120000e-60 243.0
19 TraesCS7D01G104900 chr7B 88.950 181 20 0 6809 6989 4151790 4151970 2.580000e-54 224.0
20 TraesCS7D01G104900 chr7B 93.197 147 10 0 1 147 4144384 4144530 4.310000e-52 217.0
21 TraesCS7D01G104900 chr7B 86.528 193 21 3 3330 3519 118652530 118652340 2.600000e-49 207.0
22 TraesCS7D01G104900 chr7B 86.667 135 15 3 2816 2947 4096092 4096226 5.740000e-31 147.0
23 TraesCS7D01G104900 chr7B 96.250 80 3 0 2536 2615 4095826 4095905 1.610000e-26 132.0
24 TraesCS7D01G104900 chr7B 93.827 81 5 0 2530 2610 4087713 4087793 9.680000e-24 122.0
25 TraesCS7D01G104900 chr7B 85.841 113 15 1 1 113 535673217 535673106 1.250000e-22 119.0
26 TraesCS7D01G104900 chr7B 88.571 70 2 3 3849 3918 4096228 4096291 5.910000e-11 80.5
27 TraesCS7D01G104900 chr7A 93.479 2147 111 15 4075 6209 66608819 66610948 0.000000e+00 3162.0
28 TraesCS7D01G104900 chr7A 88.554 1922 165 31 35 1917 66605329 66607234 0.000000e+00 2279.0
29 TraesCS7D01G104900 chr7A 82.576 1079 170 15 5139 6207 66427921 66428991 0.000000e+00 935.0
30 TraesCS7D01G104900 chr7A 89.686 669 64 4 2029 2695 66607505 66608170 0.000000e+00 848.0
31 TraesCS7D01G104900 chr7A 85.211 710 72 16 4090 4793 66426896 66427578 0.000000e+00 699.0
32 TraesCS7D01G104900 chr7A 92.289 415 28 4 6220 6631 66611294 66611707 2.850000e-163 586.0
33 TraesCS7D01G104900 chr7A 83.019 477 59 15 6630 7098 66611863 66612325 5.130000e-111 412.0
34 TraesCS7D01G104900 chr7A 82.227 467 56 17 946 1402 66423295 66423744 1.870000e-100 377.0
35 TraesCS7D01G104900 chr7A 82.864 391 59 7 4415 4804 66420314 66420697 1.900000e-90 344.0
36 TraesCS7D01G104900 chr7A 92.118 203 16 0 3847 4049 66608564 66608766 3.240000e-73 287.0
37 TraesCS7D01G104900 chr7A 91.787 207 12 5 2691 2893 66608205 66608410 4.190000e-72 283.0
38 TraesCS7D01G104900 chr7A 87.565 193 19 3 3330 3519 210861300 210861110 1.200000e-52 219.0
39 TraesCS7D01G104900 chr7A 87.407 135 14 3 2816 2947 66425417 66425551 1.230000e-32 152.0
40 TraesCS7D01G104900 chr7A 96.296 81 3 0 2535 2615 66425143 66425223 4.470000e-27 134.0
41 TraesCS7D01G104900 chr7A 94.286 70 4 0 2530 2599 66412925 66412994 2.710000e-19 108.0
42 TraesCS7D01G104900 chr7A 96.610 59 2 0 2891 2949 66608508 66608566 1.630000e-16 99.0
43 TraesCS7D01G104900 chr7A 88.571 70 2 4 3849 3918 66425553 66425616 5.910000e-11 80.5
44 TraesCS7D01G104900 chr7A 85.714 63 3 2 3856 3918 66409596 66409652 2.140000e-05 62.1
45 TraesCS7D01G104900 chr6A 81.267 2162 302 56 4090 6214 74411903 74413998 0.000000e+00 1653.0
46 TraesCS7D01G104900 chr6A 97.531 81 2 0 2535 2615 74409467 74409547 9.610000e-29 139.0
47 TraesCS7D01G104900 chr1D 91.290 930 52 14 2946 3849 285559900 285558974 0.000000e+00 1242.0
48 TraesCS7D01G104900 chr1D 83.557 967 67 33 2947 3849 282963696 282964634 0.000000e+00 821.0
49 TraesCS7D01G104900 chr1D 78.300 659 76 24 19 668 339383046 339383646 5.240000e-96 363.0
50 TraesCS7D01G104900 chr3B 89.313 917 82 8 2949 3851 157759341 157760255 0.000000e+00 1136.0
51 TraesCS7D01G104900 chr2A 89.111 900 77 15 2968 3848 103129624 103128727 0.000000e+00 1099.0
52 TraesCS7D01G104900 chr2A 84.978 912 65 17 2951 3847 89493262 89494116 0.000000e+00 859.0
53 TraesCS7D01G104900 chr2A 91.329 519 41 4 3330 3847 709175771 709176286 0.000000e+00 706.0
54 TraesCS7D01G104900 chr2A 89.922 387 38 1 2959 3345 709175365 709175750 1.380000e-136 497.0
55 TraesCS7D01G104900 chr2A 80.734 218 20 5 98 315 141511850 141511655 4.440000e-32 150.0
56 TraesCS7D01G104900 chr4D 86.588 932 62 13 2949 3844 95772903 95773807 0.000000e+00 970.0
57 TraesCS7D01G104900 chr5B 89.113 496 42 3 3355 3847 606907273 606906787 2.190000e-169 606.0
58 TraesCS7D01G104900 chr5B 86.683 413 37 1 2949 3343 606916560 606916148 6.540000e-120 442.0
59 TraesCS7D01G104900 chr5B 79.614 466 61 22 201 656 700337689 700337248 3.220000e-78 303.0
60 TraesCS7D01G104900 chr5B 91.837 49 4 0 2350 2398 331892794 331892746 1.280000e-07 69.4
61 TraesCS7D01G104900 chr6B 82.748 655 94 16 19 663 205359218 205359863 3.720000e-157 566.0
62 TraesCS7D01G104900 chr6B 85.841 113 15 1 1 113 56328981 56328870 1.250000e-22 119.0
63 TraesCS7D01G104900 chr4A 85.084 476 41 9 2946 3391 713469816 713469341 6.490000e-125 459.0
64 TraesCS7D01G104900 chr4A 85.448 268 28 9 162 426 620195880 620195621 1.170000e-67 268.0
65 TraesCS7D01G104900 chr4A 79.114 158 29 3 1 156 369953248 369953403 9.740000e-19 106.0
66 TraesCS7D01G104900 chr1B 79.321 619 95 23 1 608 542956849 542957445 3.090000e-108 403.0
67 TraesCS7D01G104900 chr1B 84.672 137 19 2 21 156 676217433 676217568 1.240000e-27 135.0
68 TraesCS7D01G104900 chr1B 83.221 149 21 4 347 492 454440037 454440184 4.470000e-27 134.0
69 TraesCS7D01G104900 chr2D 76.900 671 94 30 19 670 90311529 90310901 2.470000e-84 324.0
70 TraesCS7D01G104900 chr5D 87.008 254 30 3 2943 3195 431136825 431137076 4.190000e-72 283.0
71 TraesCS7D01G104900 chr5D 87.554 233 27 2 2968 3198 527893053 527892821 1.170000e-67 268.0
72 TraesCS7D01G104900 chr5D 80.719 306 52 6 4416 4719 519701635 519701335 1.540000e-56 231.0
73 TraesCS7D01G104900 chr5D 80.000 155 28 2 1 155 564217089 564216938 2.090000e-20 111.0
74 TraesCS7D01G104900 chr2B 80.095 211 32 8 446 650 791123822 791123616 1.600000e-31 148.0
75 TraesCS7D01G104900 chr1A 84.277 159 18 7 263 415 565016335 565016178 1.600000e-31 148.0
76 TraesCS7D01G104900 chr1A 91.753 97 8 0 3753 3849 535756706 535756802 1.240000e-27 135.0
77 TraesCS7D01G104900 chr1A 86.207 87 11 1 457 542 117242237 117242323 7.590000e-15 93.5
78 TraesCS7D01G104900 chr5A 80.272 147 29 0 10 156 511965829 511965683 2.090000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G104900 chr7D 63638888 63645990 7102 False 13117.000000 13117 100.000000 1 7103 1 chr7D.!!$F2 7102
1 TraesCS7D01G104900 chr7D 63606372 63610217 3845 False 654.333333 1740 89.669000 2536 6214 3 chr7D.!!$F5 3678
2 TraesCS7D01G104900 chr7B 4144384 4151970 7586 False 1361.000000 3910 91.753167 1 6989 6 chr7B.!!$F4 6988
3 TraesCS7D01G104900 chr7B 4093761 4099525 5764 False 403.416667 994 86.652667 946 6133 6 chr7B.!!$F3 5187
4 TraesCS7D01G104900 chr7A 66605329 66612325 6996 False 994.500000 3162 90.942750 35 7098 8 chr7A.!!$F3 7063
5 TraesCS7D01G104900 chr7A 66420314 66428991 8677 False 388.785714 935 86.450286 946 6207 7 chr7A.!!$F2 5261
6 TraesCS7D01G104900 chr6A 74409467 74413998 4531 False 896.000000 1653 89.399000 2535 6214 2 chr6A.!!$F1 3679
7 TraesCS7D01G104900 chr1D 285558974 285559900 926 True 1242.000000 1242 91.290000 2946 3849 1 chr1D.!!$R1 903
8 TraesCS7D01G104900 chr1D 282963696 282964634 938 False 821.000000 821 83.557000 2947 3849 1 chr1D.!!$F1 902
9 TraesCS7D01G104900 chr1D 339383046 339383646 600 False 363.000000 363 78.300000 19 668 1 chr1D.!!$F2 649
10 TraesCS7D01G104900 chr3B 157759341 157760255 914 False 1136.000000 1136 89.313000 2949 3851 1 chr3B.!!$F1 902
11 TraesCS7D01G104900 chr2A 103128727 103129624 897 True 1099.000000 1099 89.111000 2968 3848 1 chr2A.!!$R1 880
12 TraesCS7D01G104900 chr2A 89493262 89494116 854 False 859.000000 859 84.978000 2951 3847 1 chr2A.!!$F1 896
13 TraesCS7D01G104900 chr2A 709175365 709176286 921 False 601.500000 706 90.625500 2959 3847 2 chr2A.!!$F2 888
14 TraesCS7D01G104900 chr4D 95772903 95773807 904 False 970.000000 970 86.588000 2949 3844 1 chr4D.!!$F1 895
15 TraesCS7D01G104900 chr6B 205359218 205359863 645 False 566.000000 566 82.748000 19 663 1 chr6B.!!$F1 644
16 TraesCS7D01G104900 chr1B 542956849 542957445 596 False 403.000000 403 79.321000 1 608 1 chr1B.!!$F2 607
17 TraesCS7D01G104900 chr2D 90310901 90311529 628 True 324.000000 324 76.900000 19 670 1 chr2D.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 1157 0.660488 AGTAGAGATCTGCGTGCTCG 59.340 55.000 0.00 3.31 40.37 5.03 F
1358 3406 0.324460 TCCCTTCTCTCTCCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62 F
1843 4872 0.907704 TCAGCGGGGGTGTACAATCT 60.908 55.000 0.00 0.00 32.43 2.40 F
2232 5424 1.718280 GGTAGGACGGGAGGATCATT 58.282 55.000 0.00 0.00 36.25 2.57 F
3067 6566 1.882352 GCTGTCCGTTTGTCATCCCTT 60.882 52.381 0.00 0.00 0.00 3.95 F
3832 7481 0.818040 GTGTCTGTTTGGGTCGCCTT 60.818 55.000 0.00 0.00 0.00 4.35 F
4621 10005 0.544697 ACCACGAGGGACAACAAACT 59.455 50.000 3.29 0.00 41.15 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 4738 1.065854 CGCCCCAGAAACAAGATCTCT 60.066 52.381 0.00 0.00 0.00 3.10 R
3186 6709 0.241213 TTTCTCGCTCGGTCACTGAG 59.759 55.000 9.55 9.55 36.53 3.35 R
3367 6959 0.179070 GGAGGAAGGCGATGAGGAAC 60.179 60.000 0.00 0.00 0.00 3.62 R
3526 7173 0.392863 TCGTCGAACTGGATCCGGTA 60.393 55.000 26.70 8.70 34.70 4.02 R
4060 9401 0.953727 CTTTGCAGCCAAGCACTGTA 59.046 50.000 0.00 0.00 45.61 2.74 R
5085 10479 1.026584 GTTGTGCCGGTGGTAACTTT 58.973 50.000 1.90 0.00 37.61 2.66 R
6133 11592 0.035820 AATTTGGCGGCTTCTACGGA 60.036 50.000 11.43 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 66 4.702131 ACACTTGATTTGAGAATGTAGCCC 59.298 41.667 0.00 0.00 0.00 5.19
81 93 1.107114 CGTCTGGCTCTCTGTATGGT 58.893 55.000 0.00 0.00 0.00 3.55
83 95 2.688446 CGTCTGGCTCTCTGTATGGTTA 59.312 50.000 0.00 0.00 0.00 2.85
132 144 2.677003 GCGCATGTACGTGGCAGTT 61.677 57.895 16.68 0.00 34.88 3.16
197 215 3.869493 AAAAACAGCATGGAGGGGT 57.131 47.368 0.00 0.00 43.62 4.95
565 916 7.769272 TGAATTGAATCAACACTTTCCAAAC 57.231 32.000 0.00 0.00 0.00 2.93
608 959 6.529220 TCAACCTTTAATGGGATTTGGTTTG 58.471 36.000 11.78 4.98 34.55 2.93
728 1086 2.529389 ACAGGGGTGGTGGGAGTC 60.529 66.667 0.00 0.00 0.00 3.36
734 1092 4.436998 GTGGTGGGAGTCGAGGCG 62.437 72.222 0.00 0.00 0.00 5.52
798 1157 0.660488 AGTAGAGATCTGCGTGCTCG 59.340 55.000 0.00 3.31 40.37 5.03
878 1237 0.885196 CTAGGATAGTGCGCCCTCTC 59.115 60.000 4.18 0.00 32.85 3.20
975 3012 4.699522 ACGAAGAAGGCGGTGGGC 62.700 66.667 0.00 0.00 42.51 5.36
1202 3239 7.659390 AGGCATGCTTATCTAATTACTCTCAAC 59.341 37.037 18.92 0.00 0.00 3.18
1213 3250 9.710818 TCTAATTACTCTCAACTACCATAACCT 57.289 33.333 0.00 0.00 0.00 3.50
1253 3300 1.415672 AAACTCACTCGGGCCCTTCA 61.416 55.000 22.43 1.95 0.00 3.02
1333 3381 2.027625 CTTCTCCACGCCGTTGTCC 61.028 63.158 0.00 0.00 0.00 4.02
1358 3406 0.324460 TCCCTTCTCTCTCCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
1364 3412 4.069232 CTCTCCCGTTCCGCAGCA 62.069 66.667 0.00 0.00 0.00 4.41
1410 3481 1.515521 CTGCCCCTTTCGTTTCGCTT 61.516 55.000 0.00 0.00 0.00 4.68
1444 4076 1.250154 TGGTAGCATTGGCAAGGTGC 61.250 55.000 16.10 16.10 44.61 5.01
1543 4525 2.039879 GGACATGTGAGGGTAGGTGTTT 59.960 50.000 1.15 0.00 0.00 2.83
1582 4564 4.905429 TCTTCCGATCTTGACATTTGGAA 58.095 39.130 0.00 0.00 33.34 3.53
1590 4588 6.529125 CGATCTTGACATTTGGAAGAAATTGG 59.471 38.462 0.00 0.00 29.78 3.16
1592 4590 4.270245 TGACATTTGGAAGAAATTGGCC 57.730 40.909 0.00 0.00 0.00 5.36
1697 4695 2.963432 GAAGGATTCGAAACCCGTGTA 58.037 47.619 19.80 0.00 39.75 2.90
1701 4699 1.356527 ATTCGAAACCCGTGTAGCGC 61.357 55.000 0.00 0.00 39.71 5.92
1718 4716 2.819595 CGGAGTGATGCCCCAACG 60.820 66.667 0.00 0.00 0.00 4.10
1740 4738 5.046878 ACGGATGTTACTTCAGTGGTGATTA 60.047 40.000 3.59 0.00 30.85 1.75
1741 4739 5.520288 CGGATGTTACTTCAGTGGTGATTAG 59.480 44.000 0.84 0.00 30.85 1.73
1778 4776 2.094390 GGCGAGTCACTATTGTGGTACA 60.094 50.000 7.45 0.00 43.94 2.90
1795 4822 5.346281 GTGGTACATCGAGTCTTCTTTCTTG 59.654 44.000 0.00 0.00 44.52 3.02
1843 4872 0.907704 TCAGCGGGGGTGTACAATCT 60.908 55.000 0.00 0.00 32.43 2.40
1990 5022 9.463443 AAAGAAATTGCAACTATGTAAGTGAAC 57.537 29.630 0.00 0.00 38.88 3.18
2018 5051 9.821662 AAAAACAGTTCGTCAAGCTTTATATAC 57.178 29.630 0.00 0.00 0.00 1.47
2026 5059 7.406553 TCGTCAAGCTTTATATACATTTGCAC 58.593 34.615 0.00 0.00 0.00 4.57
2049 5240 6.878923 CACTGAGGAAATGGTATTGACAGTTA 59.121 38.462 0.00 0.00 34.57 2.24
2089 5280 4.591072 GTCTCTAATATTGCAGGGGAGTCT 59.409 45.833 0.00 0.00 0.00 3.24
2100 5291 3.307762 GCAGGGGAGTCTGTAGTCATTTT 60.308 47.826 0.00 0.00 37.12 1.82
2113 5304 2.552315 AGTCATTTTGTCCGTTTCGCAT 59.448 40.909 0.00 0.00 0.00 4.73
2115 5306 2.550180 TCATTTTGTCCGTTTCGCATGA 59.450 40.909 0.00 0.00 0.00 3.07
2148 5340 6.338146 CGTTCCAGTTATCTCTTGTCCAATA 58.662 40.000 0.00 0.00 0.00 1.90
2157 5349 9.274206 GTTATCTCTTGTCCAATATTTACCTCC 57.726 37.037 0.00 0.00 0.00 4.30
2166 5358 5.849475 TCCAATATTTACCTCCTCCATAGCA 59.151 40.000 0.00 0.00 0.00 3.49
2232 5424 1.718280 GGTAGGACGGGAGGATCATT 58.282 55.000 0.00 0.00 36.25 2.57
2242 5434 6.715264 GGACGGGAGGATCATTTTAATTATGT 59.285 38.462 0.00 0.00 36.25 2.29
2290 5482 8.658499 AGGATCACGGTAATTATGAAAAGTAC 57.342 34.615 0.00 0.00 0.00 2.73
2316 5508 2.503356 GAGTGTTGGAGTGGAGGATCAT 59.497 50.000 0.00 0.00 36.25 2.45
2327 5519 5.251764 AGTGGAGGATCATGCTAATTATGC 58.748 41.667 0.00 0.00 36.25 3.14
2347 5539 4.939271 TGCAGAATATCGTTATTCGGACA 58.061 39.130 22.53 17.68 45.59 4.02
2436 5628 7.532571 GTTAATTATGAAAAGTAGCAACGGGT 58.467 34.615 0.00 0.00 0.00 5.28
2752 6022 6.816136 TCGTTCTATTCATGCCTTATTCAGA 58.184 36.000 0.00 0.00 0.00 3.27
2838 6119 8.198109 AGTAGGCTAATAGTTTAGTGTGTGATG 58.802 37.037 0.00 0.00 37.68 3.07
3067 6566 1.882352 GCTGTCCGTTTGTCATCCCTT 60.882 52.381 0.00 0.00 0.00 3.95
3139 6650 3.432588 CGGGCACTCTCGTCGTCT 61.433 66.667 0.00 0.00 0.00 4.18
3186 6709 4.489771 CGCCCCTGGACCCATGTC 62.490 72.222 0.00 0.00 40.98 3.06
3345 6880 4.507916 TCCGCCTCCTCCTCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
3415 7035 4.400251 CCCTCCTCCCGGTCCACT 62.400 72.222 0.00 0.00 0.00 4.00
3417 7037 2.283966 CTCCTCCCGGTCCACTGT 60.284 66.667 0.00 0.00 0.00 3.55
3526 7173 2.844839 GCCGCCAGGGACCTCTAT 60.845 66.667 0.00 0.00 38.47 1.98
3700 7348 3.442977 GGAAATCTGCATCTTGCTTGTCT 59.557 43.478 0.75 0.00 45.31 3.41
3831 7480 1.227853 GTGTCTGTTTGGGTCGCCT 60.228 57.895 0.00 0.00 0.00 5.52
3832 7481 0.818040 GTGTCTGTTTGGGTCGCCTT 60.818 55.000 0.00 0.00 0.00 4.35
4033 8365 5.200368 AGTAAAAGGGCACAATTGTTCTG 57.800 39.130 8.77 0.00 0.00 3.02
4144 9524 3.217626 CCTGATTAGAGGGCCAATTGTC 58.782 50.000 6.18 0.00 0.00 3.18
4185 9565 4.589908 ACATGAACTAATTCCAGTGACCC 58.410 43.478 0.00 0.00 33.49 4.46
4371 9755 8.268738 GCATTCACAATAAACTTCAGTTTTGAC 58.731 33.333 10.15 0.00 45.07 3.18
4372 9756 7.962934 TTCACAATAAACTTCAGTTTTGACG 57.037 32.000 10.15 2.43 45.07 4.35
4380 9764 2.031258 TCAGTTTTGACGTGCTGGAA 57.969 45.000 0.00 0.00 0.00 3.53
4411 9795 7.214467 TCAACTTCTTGATAATCAACAACCC 57.786 36.000 0.00 0.00 32.21 4.11
4414 9798 4.946160 TCTTGATAATCAACAACCCCCT 57.054 40.909 0.00 0.00 32.21 4.79
4419 9803 7.898636 TCTTGATAATCAACAACCCCCTTTATT 59.101 33.333 0.00 0.00 32.21 1.40
4621 10005 0.544697 ACCACGAGGGACAACAAACT 59.455 50.000 3.29 0.00 41.15 2.66
4648 10032 3.698040 AGGTTGCAAGCAATCATCTAAGG 59.302 43.478 28.75 0.00 39.36 2.69
4735 10119 4.557605 GCAATGGCATGTCGCGGG 62.558 66.667 6.13 0.00 43.84 6.13
4810 10197 4.740695 GGAGACGTGTGCTCATTAGTATTC 59.259 45.833 0.00 0.00 34.07 1.75
4818 10205 2.224305 GCTCATTAGTATTCCAGCGGGT 60.224 50.000 1.81 0.00 34.93 5.28
4858 10245 1.153147 GGGAAAGAGGGCATCGGAC 60.153 63.158 0.00 0.00 0.00 4.79
5007 10401 7.701924 TGTCAGCTTTGTTTTGATAAGAACTTG 59.298 33.333 0.00 0.00 0.00 3.16
5098 10492 7.225341 GTCCATTACTTATAAAGTTACCACCGG 59.775 40.741 0.00 0.00 42.81 5.28
5115 10527 2.691011 ACCGGCACAACATTTTAAGTGT 59.309 40.909 0.00 0.00 34.59 3.55
5116 10528 3.884091 ACCGGCACAACATTTTAAGTGTA 59.116 39.130 0.00 0.00 34.59 2.90
5117 10529 4.338682 ACCGGCACAACATTTTAAGTGTAA 59.661 37.500 0.00 0.00 34.59 2.41
5118 10530 5.010213 ACCGGCACAACATTTTAAGTGTAAT 59.990 36.000 0.00 0.00 34.59 1.89
5173 10611 7.795431 TTCAACATTGATCGTGCTTTTAATC 57.205 32.000 0.00 0.00 37.00 1.75
5281 10724 5.374071 AGCTGATGATGATCTTGTTGCATA 58.626 37.500 0.00 0.00 0.00 3.14
5315 10758 3.065786 CCAACACGAGATTGGGATGATTG 59.934 47.826 8.60 0.00 42.57 2.67
5562 11014 3.634448 CCATCTTCTACTCGGTGAGTCAT 59.366 47.826 2.17 0.00 42.40 3.06
5580 11032 7.173218 GTGAGTCATTAGATCTGAAAAACACCA 59.827 37.037 5.18 0.00 0.00 4.17
5653 11107 7.059488 CGTAATTTCTTTGAAACTGGTTCATCG 59.941 37.037 9.24 3.75 45.71 3.84
5781 11236 1.951209 TAGCCTGAACTCATGGGTCA 58.049 50.000 0.00 0.00 39.67 4.02
5956 11414 9.996554 CTTTCTGGTTCCAATAAAAGGTTTAAT 57.003 29.630 10.53 0.00 0.00 1.40
6090 11549 8.862325 TCCTATCAGCAAAATCAAAAGAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
6111 11570 1.268794 CGGGACAAGTAGAGCTCATCG 60.269 57.143 17.77 1.76 0.00 3.84
6147 11606 0.103572 TTGTATCCGTAGAAGCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
6231 12025 8.425577 ACATGTTTCTACAATTTCCTATCGAG 57.574 34.615 0.00 0.00 37.91 4.04
6269 12063 3.678806 GCCGGACAAGTAGACATCATCAA 60.679 47.826 5.05 0.00 0.00 2.57
6270 12064 4.697514 CCGGACAAGTAGACATCATCAAT 58.302 43.478 0.00 0.00 0.00 2.57
6292 12087 3.217626 AGCAAGCAAAGTTCTTGTAGCT 58.782 40.909 6.27 0.00 42.06 3.32
6295 12090 1.532868 AGCAAAGTTCTTGTAGCTGCG 59.467 47.619 0.00 0.00 33.61 5.18
6418 12217 0.178909 TTCCCCGTACAACCCCTACA 60.179 55.000 0.00 0.00 0.00 2.74
6446 12245 3.181329 TCCACTGTCACCAGGAACATAT 58.819 45.455 0.00 0.00 43.36 1.78
6488 12288 7.192913 TGAAAACAACACTTACTAGCAATGTG 58.807 34.615 9.08 9.08 35.09 3.21
6506 12306 6.317140 GCAATGTGTTCTTAATCCATCTCTCA 59.683 38.462 0.00 0.00 0.00 3.27
6639 12596 4.846779 TTCTGGATCCCGTTTTTCTTTG 57.153 40.909 9.90 0.00 0.00 2.77
6657 12617 2.144738 GGTAGGGGCCGGAATAGCA 61.145 63.158 5.05 0.00 0.00 3.49
6791 12752 2.358267 ACAAACACGTCTCTTCTCGAGT 59.642 45.455 13.13 0.00 40.75 4.18
6796 12757 1.157585 CGTCTCTTCTCGAGTGGTCA 58.842 55.000 13.13 0.00 40.75 4.02
6821 14139 1.005867 GTTAGTCGTCCGCCCACAA 60.006 57.895 0.00 0.00 0.00 3.33
6822 14140 1.012486 GTTAGTCGTCCGCCCACAAG 61.012 60.000 0.00 0.00 0.00 3.16
6837 14155 1.521681 CAAGGCGAGTTCGATCCCC 60.522 63.158 5.60 0.00 43.02 4.81
6840 14158 2.423898 GGCGAGTTCGATCCCCTCA 61.424 63.158 5.60 0.00 43.02 3.86
6888 14206 1.207089 TGTTCAGGATGCCTTAGTCGG 59.793 52.381 0.00 0.00 34.76 4.79
6889 14207 1.207329 GTTCAGGATGCCTTAGTCGGT 59.793 52.381 0.00 0.00 34.76 4.69
6893 14211 0.392461 GGATGCCTTAGTCGGTTGCA 60.392 55.000 0.00 0.00 36.23 4.08
6955 14273 1.216941 GCGAAAGTCGAACCCGTGAA 61.217 55.000 1.05 0.00 43.74 3.18
6956 14274 1.425412 CGAAAGTCGAACCCGTGAAT 58.575 50.000 0.00 0.00 43.74 2.57
7001 14321 6.553100 GCATCTACAATAGGCTCCCTATATCT 59.447 42.308 4.32 0.00 45.14 1.98
7017 14337 4.740822 CTGCCCCAAACTCCCGGG 62.741 72.222 16.85 16.85 42.67 5.73
7031 14351 3.508840 CGGGCGGGCTGTTCAATC 61.509 66.667 1.55 0.00 0.00 2.67
7038 14358 1.197721 CGGGCTGTTCAATCAGTGTTC 59.802 52.381 0.00 0.00 37.70 3.18
7043 14363 2.131972 TGTTCAATCAGTGTTCGGACG 58.868 47.619 0.00 0.00 0.00 4.79
7053 14373 2.546789 AGTGTTCGGACGGAAAAATGTC 59.453 45.455 0.00 0.00 36.14 3.06
7085 14405 0.856982 TCCCCATATTCGGCCCAAAT 59.143 50.000 0.00 0.00 0.00 2.32
7088 14408 0.039256 CCATATTCGGCCCAAATGCG 60.039 55.000 0.00 0.00 0.00 4.73
7090 14410 1.106351 ATATTCGGCCCAAATGCGCA 61.106 50.000 14.96 14.96 0.00 6.09
7091 14411 1.723608 TATTCGGCCCAAATGCGCAG 61.724 55.000 18.32 2.01 0.00 5.18
7098 14418 1.503542 CCAAATGCGCAGACTGACC 59.496 57.895 18.32 0.00 0.00 4.02
7099 14419 1.133253 CAAATGCGCAGACTGACCG 59.867 57.895 18.32 2.11 0.00 4.79
7100 14420 2.034879 AAATGCGCAGACTGACCGG 61.035 57.895 18.32 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.694231 TTCTCAAATCAAGTGTGTCCATG 57.306 39.130 0.00 0.00 0.00 3.66
62 66 1.107114 ACCATACAGAGAGCCAGACG 58.893 55.000 0.00 0.00 0.00 4.18
160 172 2.727123 TTTCTTCCTTGCACACTCCA 57.273 45.000 0.00 0.00 0.00 3.86
194 212 3.966543 CTCCCACCACCACCACCC 61.967 72.222 0.00 0.00 0.00 4.61
196 214 3.175710 ACCTCCCACCACCACCAC 61.176 66.667 0.00 0.00 0.00 4.16
197 215 3.174987 CACCTCCCACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
462 812 7.741785 TCACCTTCCTAAAAGACAGAAATACA 58.258 34.615 0.00 0.00 0.00 2.29
463 813 8.794335 ATCACCTTCCTAAAAGACAGAAATAC 57.206 34.615 0.00 0.00 0.00 1.89
565 916 6.712547 AGGTTGAGATCTTGTTTAGTTCTTGG 59.287 38.462 0.00 0.00 33.92 3.61
608 959 4.398044 TGGATTTTTCTCGCTCCCATTAAC 59.602 41.667 0.00 0.00 0.00 2.01
728 1086 4.267928 CCTCACTAGTTTATTTTCGCCTCG 59.732 45.833 0.00 0.00 0.00 4.63
734 1092 5.818336 GGGCTCTCCTCACTAGTTTATTTTC 59.182 44.000 0.00 0.00 0.00 2.29
850 1209 2.352225 CGCACTATCCTAGCTTGCTAGG 60.352 54.545 32.05 32.05 45.93 3.02
878 1237 1.644372 CCGTCTCGATCTCCGACTG 59.356 63.158 0.00 0.00 43.23 3.51
975 3012 2.993853 GGAGCCTTCCACTCCCAG 59.006 66.667 0.00 0.00 46.81 4.45
993 3030 4.002506 ACCAGCACCATCGACGCA 62.003 61.111 0.00 0.00 0.00 5.24
1176 3213 7.308450 TGAGAGTAATTAGATAAGCATGCCT 57.692 36.000 15.66 3.39 0.00 4.75
1191 3228 8.822805 TGAAAGGTTATGGTAGTTGAGAGTAAT 58.177 33.333 0.00 0.00 0.00 1.89
1202 3239 7.938140 TGGAAGAATTGAAAGGTTATGGTAG 57.062 36.000 0.00 0.00 0.00 3.18
1253 3300 2.427506 GGTGTGCGAGAGGAGAATTTT 58.572 47.619 0.00 0.00 0.00 1.82
1333 3381 1.036707 GGAGAGAGAAGGGATGTCGG 58.963 60.000 0.00 0.00 0.00 4.79
1358 3406 2.023741 GCCATCAACGATGCTGCG 59.976 61.111 0.00 0.00 38.59 5.18
1364 3412 2.783135 ACTTGTCTTGCCATCAACGAT 58.217 42.857 0.00 0.00 0.00 3.73
1401 3449 3.124128 GGAACCTAAACCTAAGCGAAACG 59.876 47.826 0.00 0.00 0.00 3.60
1444 4076 1.269726 ACAACTTTTCATTGCCAGCGG 60.270 47.619 0.00 0.00 0.00 5.52
1445 4077 2.138596 ACAACTTTTCATTGCCAGCG 57.861 45.000 0.00 0.00 0.00 5.18
1543 4525 4.142447 CGGAAGAGAACGAATAGAACTGGA 60.142 45.833 0.00 0.00 0.00 3.86
1582 4564 0.890683 CAAAGAGCCGGCCAATTTCT 59.109 50.000 26.15 16.74 0.00 2.52
1590 4588 4.410743 GCTGCACAAAGAGCCGGC 62.411 66.667 21.89 21.89 0.00 6.13
1592 4590 3.043713 TCGCTGCACAAAGAGCCG 61.044 61.111 0.00 0.00 30.98 5.52
1701 4699 2.819595 CGTTGGGGCATCACTCCG 60.820 66.667 0.00 0.00 0.00 4.63
1718 4716 6.640518 TCTAATCACCACTGAAGTAACATCC 58.359 40.000 0.00 0.00 0.00 3.51
1740 4738 1.065854 CGCCCCAGAAACAAGATCTCT 60.066 52.381 0.00 0.00 0.00 3.10
1741 4739 1.066143 TCGCCCCAGAAACAAGATCTC 60.066 52.381 0.00 0.00 0.00 2.75
1778 4776 4.962155 ACAACCAAGAAAGAAGACTCGAT 58.038 39.130 0.00 0.00 0.00 3.59
1795 4822 1.165270 ATTGCACTAAGCCGACAACC 58.835 50.000 0.00 0.00 44.83 3.77
1834 4863 8.840200 ACCTATCTTCTTCCTTAGATTGTACA 57.160 34.615 0.00 0.00 33.38 2.90
1843 4872 9.725206 AAACCATACTACCTATCTTCTTCCTTA 57.275 33.333 0.00 0.00 0.00 2.69
1889 4921 9.706691 AGAAAGATAACAAGAAACAAGACGATA 57.293 29.630 0.00 0.00 0.00 2.92
2002 5035 7.374228 CAGTGCAAATGTATATAAAGCTTGACG 59.626 37.037 0.00 0.00 0.00 4.35
2018 5051 3.947910 ACCATTTCCTCAGTGCAAATG 57.052 42.857 11.96 11.96 37.29 2.32
2026 5059 7.331026 TCTAACTGTCAATACCATTTCCTCAG 58.669 38.462 0.00 0.00 0.00 3.35
2073 5264 3.643792 GACTACAGACTCCCCTGCAATAT 59.356 47.826 0.00 0.00 37.68 1.28
2078 5269 1.490574 ATGACTACAGACTCCCCTGC 58.509 55.000 0.00 0.00 37.68 4.85
2089 5280 3.059461 GCGAAACGGACAAAATGACTACA 60.059 43.478 0.00 0.00 0.00 2.74
2100 5291 2.442212 TTAGTCATGCGAAACGGACA 57.558 45.000 0.00 0.00 32.79 4.02
2148 5340 3.048600 TGCTGCTATGGAGGAGGTAAAT 58.951 45.455 0.00 0.00 41.32 1.40
2152 5344 1.974236 GTATGCTGCTATGGAGGAGGT 59.026 52.381 0.00 0.00 41.32 3.85
2157 5349 7.201679 GGCTAATTATTGTATGCTGCTATGGAG 60.202 40.741 0.00 0.00 0.00 3.86
2199 5391 5.456186 CCCGTCCTACCCTCATGATTATTTT 60.456 44.000 0.00 0.00 0.00 1.82
2216 5408 5.388599 AATTAAAATGATCCTCCCGTCCT 57.611 39.130 0.00 0.00 0.00 3.85
2262 5454 8.047310 ACTTTTCATAATTACCGTGATCCTCTT 58.953 33.333 0.00 0.00 0.00 2.85
2290 5482 2.099921 CCTCCACTCCAACACTCGATAG 59.900 54.545 0.00 0.00 0.00 2.08
2327 5519 7.798516 CCAAATTGTCCGAATAACGATATTCTG 59.201 37.037 19.39 14.57 43.46 3.02
2342 5534 3.889196 TTCTTTCGTCCAAATTGTCCG 57.111 42.857 0.00 0.00 0.00 4.79
2347 5539 9.927668 AATTAACATGATTCTTTCGTCCAAATT 57.072 25.926 0.00 0.00 0.00 1.82
2436 5628 2.637872 AGGGAAAATCTTCTGACGGACA 59.362 45.455 0.00 0.00 0.00 4.02
2838 6119 1.609555 CTAGACCAGGACATAGGCGAC 59.390 57.143 0.00 0.00 0.00 5.19
2999 6497 2.734893 CCCGTTGGGCCAACTTTTA 58.265 52.632 38.24 8.62 41.62 1.52
3067 6566 1.595929 GCGTTCAGTTTGGGTCGGA 60.596 57.895 0.00 0.00 0.00 4.55
3139 6650 2.993840 AGGCAGCAGACGAGAGCA 60.994 61.111 0.00 0.00 0.00 4.26
3186 6709 0.241213 TTTCTCGCTCGGTCACTGAG 59.759 55.000 9.55 9.55 36.53 3.35
3325 6860 4.467107 GGAGGAGGAGGCGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
3367 6959 0.179070 GGAGGAAGGCGATGAGGAAC 60.179 60.000 0.00 0.00 0.00 3.62
3526 7173 0.392863 TCGTCGAACTGGATCCGGTA 60.393 55.000 26.70 8.70 34.70 4.02
3559 7207 2.765969 CCACCCCTGCTTCCATGT 59.234 61.111 0.00 0.00 0.00 3.21
3818 7467 1.388065 CCAACAAGGCGACCCAAACA 61.388 55.000 0.00 0.00 0.00 2.83
3831 7480 4.274147 TGGTTTAAGAGCAACTCCAACAA 58.726 39.130 0.00 0.00 31.67 2.83
3832 7481 3.882888 CTGGTTTAAGAGCAACTCCAACA 59.117 43.478 0.00 0.00 34.90 3.33
3961 8002 6.751514 ACTCATGTGCGGAATTTAATTACA 57.248 33.333 0.54 0.00 0.00 2.41
4060 9401 0.953727 CTTTGCAGCCAAGCACTGTA 59.046 50.000 0.00 0.00 45.61 2.74
4144 9524 9.559958 GTTCATGTTATCCAGTATTTTGTTCAG 57.440 33.333 0.00 0.00 0.00 3.02
4185 9565 4.864806 GCATACCTACATATCATGACGTGG 59.135 45.833 0.00 0.00 0.00 4.94
4371 9755 1.197721 GTTGATCTTGGTTCCAGCACG 59.802 52.381 0.00 0.00 0.00 5.34
4372 9756 2.508526 AGTTGATCTTGGTTCCAGCAC 58.491 47.619 0.00 0.00 0.00 4.40
4411 9795 7.544217 CCGTGTTGGAAAATAAGAAATAAAGGG 59.456 37.037 0.00 0.00 42.00 3.95
4471 9855 4.441079 GCTATGCTCCAGATTTGCAATGTT 60.441 41.667 0.00 0.00 40.24 2.71
4621 10005 3.138884 TGATTGCTTGCAACCTCTGTA 57.861 42.857 10.37 0.00 0.00 2.74
4634 10018 2.492025 TGTCCCCCTTAGATGATTGCT 58.508 47.619 0.00 0.00 0.00 3.91
4648 10032 3.117663 TGCCTACCAAGAATATTGTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
4810 10197 2.423898 ATGTCTACCGACCCGCTGG 61.424 63.158 0.00 0.00 39.47 4.85
4818 10205 3.481453 CTCCTCTCATCATGTCTACCGA 58.519 50.000 0.00 0.00 0.00 4.69
4950 10337 5.048782 GCAGGTCTCAAATGTTTGTCACATA 60.049 40.000 5.48 0.00 46.23 2.29
4952 10340 3.066621 GCAGGTCTCAAATGTTTGTCACA 59.933 43.478 5.48 0.00 40.71 3.58
4972 10361 1.311859 CAAAGCTGACAGTGAAGGCA 58.688 50.000 3.99 0.00 0.00 4.75
5022 10416 4.944619 TCAGAACATAGCCATACAGGAG 57.055 45.455 0.00 0.00 41.22 3.69
5023 10417 5.692115 TTTCAGAACATAGCCATACAGGA 57.308 39.130 0.00 0.00 41.22 3.86
5024 10418 6.949352 ATTTTCAGAACATAGCCATACAGG 57.051 37.500 0.00 0.00 41.84 4.00
5085 10479 1.026584 GTTGTGCCGGTGGTAACTTT 58.973 50.000 1.90 0.00 37.61 2.66
5173 10611 2.095853 GGTGCACTGATTACATCAACCG 59.904 50.000 17.98 0.00 39.11 4.44
5198 10638 5.213891 ACCCACATGAAAAACTGGATTTC 57.786 39.130 0.00 0.00 37.31 2.17
5366 10815 9.769093 GCACGAATATAGTACAAACAAAATTCT 57.231 29.630 0.00 0.00 0.00 2.40
5367 10816 9.549509 TGCACGAATATAGTACAAACAAAATTC 57.450 29.630 0.00 0.00 0.00 2.17
5368 10817 9.554724 CTGCACGAATATAGTACAAACAAAATT 57.445 29.630 0.00 0.00 0.00 1.82
5374 10826 6.880822 TGACTGCACGAATATAGTACAAAC 57.119 37.500 0.00 0.00 0.00 2.93
5385 10837 4.323417 TCATAACCTTTGACTGCACGAAT 58.677 39.130 0.00 0.00 0.00 3.34
5389 10841 3.821033 ACCTTCATAACCTTTGACTGCAC 59.179 43.478 0.00 0.00 0.00 4.57
5507 10959 2.090267 AGATCCCATCCTAGCTTCCACT 60.090 50.000 0.00 0.00 0.00 4.00
5622 11076 6.039382 ACCAGTTTCAAAGAAATTACGAGCTT 59.961 34.615 0.00 0.00 0.00 3.74
5653 11107 6.599356 ATTACCAGTGATTTTGTTAACCCC 57.401 37.500 2.48 0.00 0.00 4.95
5798 11253 2.555757 GCTGAACATTGGAGGATATGCC 59.444 50.000 0.00 0.00 0.00 4.40
5975 11433 9.844257 AACAATTCTATTCATTTTTGTCCCAAA 57.156 25.926 0.00 0.00 0.00 3.28
5987 11445 9.972106 AGAAGAAAGAGGAACAATTCTATTCAT 57.028 29.630 0.00 0.00 32.13 2.57
6090 11549 1.751924 GATGAGCTCTACTTGTCCCGT 59.248 52.381 16.19 0.00 0.00 5.28
6111 11570 0.457337 CAAGATCTTTGCTTGCCGCC 60.457 55.000 4.86 0.00 36.66 6.13
6133 11592 0.035820 AATTTGGCGGCTTCTACGGA 60.036 50.000 11.43 0.00 0.00 4.69
6192 11651 6.463995 AGAAACATGTCATCCTCTCTCTAC 57.536 41.667 0.00 0.00 0.00 2.59
6193 11652 7.119387 TGTAGAAACATGTCATCCTCTCTCTA 58.881 38.462 0.00 0.00 0.00 2.43
6231 12025 3.981416 GTCCGGCACTTCTTTTGATTTTC 59.019 43.478 0.00 0.00 0.00 2.29
6269 12063 5.006386 AGCTACAAGAACTTTGCTTGCTAT 58.994 37.500 0.00 0.00 45.00 2.97
6270 12064 4.214119 CAGCTACAAGAACTTTGCTTGCTA 59.786 41.667 0.00 0.00 45.00 3.49
6418 12217 2.426023 GTGACAGTGGAACCGGCT 59.574 61.111 0.00 0.00 37.80 5.52
6446 12245 5.530543 TGTTTTCAGCTCATTGTGATACACA 59.469 36.000 0.25 0.25 43.02 3.72
6554 12354 5.414454 CAGAAATCGACTAACCCAAATTCCA 59.586 40.000 0.00 0.00 0.00 3.53
6566 12366 2.099263 CCTTCTCGCCAGAAATCGACTA 59.901 50.000 0.00 0.00 38.23 2.59
6639 12596 2.113243 CTGCTATTCCGGCCCCTACC 62.113 65.000 0.00 0.00 0.00 3.18
6791 12752 0.172578 CGACTAACGCATCCTGACCA 59.827 55.000 0.00 0.00 34.51 4.02
6796 12757 1.432251 CGGACGACTAACGCATCCT 59.568 57.895 0.00 0.00 46.94 3.24
6822 14140 1.956629 TTGAGGGGATCGAACTCGCC 61.957 60.000 12.89 12.89 45.97 5.54
6888 14206 1.052768 GAATTCGCGTCGTGTGCAAC 61.053 55.000 5.77 0.00 37.35 4.17
6889 14207 1.203065 GAATTCGCGTCGTGTGCAA 59.797 52.632 5.77 0.00 0.00 4.08
6893 14211 1.138047 GGATCGAATTCGCGTCGTGT 61.138 55.000 22.90 7.51 39.52 4.49
6955 14273 8.763601 AGATGCTCTTACTTACCTTCTTTGTAT 58.236 33.333 0.00 0.00 0.00 2.29
6956 14274 8.135382 AGATGCTCTTACTTACCTTCTTTGTA 57.865 34.615 0.00 0.00 0.00 2.41
7017 14337 1.237285 ACACTGATTGAACAGCCCGC 61.237 55.000 0.00 0.00 41.06 6.13
7021 14341 2.096218 GTCCGAACACTGATTGAACAGC 60.096 50.000 0.00 0.00 41.06 4.40
7025 14345 1.341852 TCCGTCCGAACACTGATTGAA 59.658 47.619 0.00 0.00 0.00 2.69
7026 14346 0.963225 TCCGTCCGAACACTGATTGA 59.037 50.000 0.00 0.00 0.00 2.57
7029 14349 2.536761 TTTTCCGTCCGAACACTGAT 57.463 45.000 0.00 0.00 0.00 2.90
7031 14351 2.289547 ACATTTTTCCGTCCGAACACTG 59.710 45.455 0.00 0.00 0.00 3.66
7038 14358 0.519961 GGGTGACATTTTTCCGTCCG 59.480 55.000 0.00 0.00 0.00 4.79
7043 14363 1.000394 CCGGTTGGGTGACATTTTTCC 60.000 52.381 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.