AutoCloner

Multiple sequence alignment - TraesCS7D01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G104800	chr7D	100.000	2204	0	0	1	2204	63612611	63610408	0.000000e+00	4071.0
1	TraesCS7D01G104800	chr7D	92.734	523	33	3	802	1320	63648452	63647931	0.000000e+00	750.0
2	TraesCS7D01G104800	chr7B	92.995	828	42	11	786	1609	4138030	4137215	0.000000e+00	1194.0
3	TraesCS7D01G104800	chr7B	92.650	517	33	2	802	1314	4202520	4202005	0.000000e+00	739.0
4	TraesCS7D01G104800	chr7B	93.208	427	23	5	1610	2035	4136057	4135636	6.680000e-175	623.0
5	TraesCS7D01G104800	chr7B	94.348	230	13	0	744	973	4140612	4140383	9.680000e-94	353.0
6	TraesCS7D01G104800	chr7B	89.071	183	19	1	2023	2204	4099978	4099796	2.200000e-55	226.0
7	TraesCS7D01G104800	chr7B	89.873	158	11	1	1	153	4141296	4141139	4.800000e-47	198.0
8	TraesCS7D01G104800	chr7A	89.337	694	35	10	786	1474	66447096	66446437	0.000000e+00	835.0
9	TraesCS7D01G104800	chr7A	93.217	457	31	0	1506	1962	66446154	66445698	0.000000e+00	673.0
10	TraesCS7D01G104800	chr7A	90.993	433	24	9	817	1247	66615192	66614773	8.830000e-159	569.0
11	TraesCS7D01G104800	chr7A	92.029	276	22	0	708	983	66449286	66449011	2.650000e-104	388.0
12	TraesCS7D01G104800	chr7A	87.097	124	10	2	36	153	66450138	66450015	3.820000e-28	135.0
13	TraesCS7D01G104800	chr6A	91.899	395	29	2	1642	2035	74416349	74415957	1.150000e-152	549.0
14	TraesCS7D01G104800	chr6A	93.791	306	8	3	1908	2204	74414492	74414189	1.200000e-122	449.0
15	TraesCS7D01G104800	chr6A	95.025	201	9	1	1207	1406	74421038	74420838	4.570000e-82	315.0
16	TraesCS7D01G104800	chr6A	96.000	75	3	0	1375	1449	74420838	74420764	2.970000e-24	122.0
17	TraesCS7D01G104800	chr1D	89.163	203	22	0	1009	1211	10390614	10390816	1.010000e-63	254.0
18	TraesCS7D01G104800	chr1D	75.966	233	48	6	1463	1689	221081989	221081759	1.790000e-21	113.0
19	TraesCS7D01G104800	chr1B	89.691	194	20	0	1012	1205	15530913	15530720	4.700000e-62	248.0
20	TraesCS7D01G104800	chr1B	82.383	193	22	10	264	448	91383235	91383047	8.150000e-35	158.0
21	TraesCS7D01G104800	chr1A	89.000	200	21	1	1009	1207	12129624	12129823	1.690000e-61	246.0
22	TraesCS7D01G104800	chr1A	85.000	220	32	1	1009	1227	12109360	12109579	2.850000e-54	222.0
23	TraesCS7D01G104800	chr1A	76.793	237	43	11	1463	1689	285955319	285955085	2.970000e-24	122.0
24	TraesCS7D01G104800	chr3B	80.921	152	21	8	1518	1664	559916093	559916241	1.790000e-21	113.0
25	TraesCS7D01G104800	chr2D	82.727	110	12	6	1556	1659	158253431	158253323	8.380000e-15	91.6
26	TraesCS7D01G104800	chr6B	73.554	242	52	9	1461	1692	200906772	200907011	5.040000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G104800	chr7D	63610408	63612611	2203	True	4071.00	4071	100.000	1	2204	1	chr7D.!!$R1	2203
1	TraesCS7D01G104800	chr7D	63647931	63648452	521	True	750.00	750	92.734	802	1320	1	chr7D.!!$R2	518
2	TraesCS7D01G104800	chr7B	4202005	4202520	515	True	739.00	739	92.650	802	1314	1	chr7B.!!$R2	512
3	TraesCS7D01G104800	chr7B	4135636	4141296	5660	True	592.00	1194	92.606	1	2035	4	chr7B.!!$R3	2034
4	TraesCS7D01G104800	chr7A	66445698	66450138	4440	True	507.75	835	90.420	36	1962	4	chr7A.!!$R2	1926
5	TraesCS7D01G104800	chr6A	74414189	74416349	2160	True	499.00	549	92.845	1642	2204	2	chr6A.!!$R1	562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
171	213	0.334676	CAAAATCCAGGGCCTGGGTA	59.665	55.0	44.07	30.85	45.38	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2119	7922	0.961019	TTGGCCTCATTGTCTTGCAC	59.039	50.0	3.32	0.0	0.0	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	79	4.380655	GGCACACTATTCTTCACTACGAGT	60.381	45.833	0.00	0.00	0.00	4.18
110	111	7.709149	AAACTATTCCTCCTTGGATTTTCAG	57.291	36.000	0.00	0.00	45.68	3.02
163	205	4.039042	CTGGGCCAAAATCCAGGG	57.961	61.111	8.04	0.00	44.99	4.45
171	213	0.334676	CAAAATCCAGGGCCTGGGTA	59.665	55.000	44.07	30.85	45.38	3.69
238	318	3.740397	CATGCCAGCACACACCCG	61.740	66.667	0.00	0.00	0.00	5.28
375	480	9.653287	TGTTCTAGAAATCATAAGATGTTCGTT	57.347	29.630	6.78	0.00	33.90	3.85
496	610	7.277539	TCAAAAACTGTTCTGCGATTCAAAAAT	59.722	29.630	0.00	0.00	0.00	1.82
578	717	9.965748	AGAAACACGTTTTTCATTTTATGTTTG	57.034	25.926	24.64	0.00	38.70	2.93
579	718	9.748100	GAAACACGTTTTTCATTTTATGTTTGT	57.252	25.926	19.58	0.00	38.70	2.83
610	749	4.654091	TTTTGGAGAAAACAAGCCAGAG	57.346	40.909	0.00	0.00	0.00	3.35
611	750	3.576078	TTGGAGAAAACAAGCCAGAGA	57.424	42.857	0.00	0.00	0.00	3.10
612	751	3.576078	TGGAGAAAACAAGCCAGAGAA	57.424	42.857	0.00	0.00	0.00	2.87
613	752	4.104383	TGGAGAAAACAAGCCAGAGAAT	57.896	40.909	0.00	0.00	0.00	2.40
616	755	2.485814	AGAAAACAAGCCAGAGAATCGC	59.514	45.455	0.00	0.00	42.67	4.58
618	757	3.334583	AAACAAGCCAGAGAATCGCTA	57.665	42.857	0.00	0.00	42.67	4.26
621	760	2.028112	ACAAGCCAGAGAATCGCTACAA	60.028	45.455	0.00	0.00	42.67	2.41
623	762	1.550524	AGCCAGAGAATCGCTACAACA	59.449	47.619	0.00	0.00	42.67	3.33
629	803	5.580691	CCAGAGAATCGCTACAACACATTTA	59.419	40.000	0.00	0.00	42.67	1.40
633	807	8.730680	AGAGAATCGCTACAACACATTTATTTT	58.269	29.630	0.00	0.00	42.67	1.82
635	809	9.988350	AGAATCGCTACAACACATTTATTTTAG	57.012	29.630	0.00	0.00	0.00	1.85
660	834	7.828508	ATTAAATAAATCTCTGCAGCATGGA	57.171	32.000	9.47	4.96	35.86	3.41
661	835	7.643569	TTAAATAAATCTCTGCAGCATGGAA	57.356	32.000	9.47	0.00	34.45	3.53
662	836	6.534475	AAATAAATCTCTGCAGCATGGAAA	57.466	33.333	9.47	0.00	34.45	3.13
663	837	6.726490	AATAAATCTCTGCAGCATGGAAAT	57.274	33.333	9.47	0.00	34.45	2.17
665	839	5.769484	AAATCTCTGCAGCATGGAAATAG	57.231	39.130	9.47	0.00	34.45	1.73
666	840	3.204306	TCTCTGCAGCATGGAAATAGG	57.796	47.619	9.47	0.00	34.45	2.57
667	841	2.158711	TCTCTGCAGCATGGAAATAGGG	60.159	50.000	9.47	0.00	34.45	3.53
669	843	1.102809	TGCAGCATGGAAATAGGGCG	61.103	55.000	0.00	0.00	35.86	6.13
670	844	1.799258	GCAGCATGGAAATAGGGCGG	61.799	60.000	0.00	0.00	35.86	6.13
671	845	1.529244	AGCATGGAAATAGGGCGGC	60.529	57.895	0.00	0.00	0.00	6.53
673	847	2.113139	ATGGAAATAGGGCGGCCG	59.887	61.111	24.05	24.05	0.00	6.13
674	848	3.491598	ATGGAAATAGGGCGGCCGG	62.492	63.158	29.38	8.95	0.00	6.13
676	850	4.564110	GAAATAGGGCGGCCGGCT	62.564	66.667	44.57	32.93	42.94	5.52
689	863	1.807886	CCGGCTCGCTACAGTTACT	59.192	57.895	0.00	0.00	0.00	2.24
690	864	1.019673	CCGGCTCGCTACAGTTACTA	58.980	55.000	0.00	0.00	0.00	1.82
691	865	1.402968	CCGGCTCGCTACAGTTACTAA	59.597	52.381	0.00	0.00	0.00	2.24
692	866	2.159338	CCGGCTCGCTACAGTTACTAAA	60.159	50.000	0.00	0.00	0.00	1.85
694	868	4.110482	CGGCTCGCTACAGTTACTAAAAT	58.890	43.478	0.00	0.00	0.00	1.82
695	869	4.026804	CGGCTCGCTACAGTTACTAAAATG	60.027	45.833	0.00	0.00	36.75	2.32
696	870	4.868734	GGCTCGCTACAGTTACTAAAATGT	59.131	41.667	0.00	0.00	45.28	2.71
697	871	5.220416	GGCTCGCTACAGTTACTAAAATGTG	60.220	44.000	1.82	0.00	43.32	3.21
698	872	5.724223	GCTCGCTACAGTTACTAAAATGTGC	60.724	44.000	1.82	3.30	43.32	4.57
699	873	4.565229	CGCTACAGTTACTAAAATGTGCG	58.435	43.478	15.22	15.22	43.32	5.34
700	874	4.491924	CGCTACAGTTACTAAAATGTGCGG	60.492	45.833	18.41	6.05	45.76	5.69
701	875	4.201783	GCTACAGTTACTAAAATGTGCGGG	60.202	45.833	1.82	0.00	43.32	6.13
702	876	3.746940	ACAGTTACTAAAATGTGCGGGT	58.253	40.909	0.00	0.00	42.01	5.28
703	877	3.749609	ACAGTTACTAAAATGTGCGGGTC	59.250	43.478	0.00	0.00	42.01	4.46
704	878	3.126343	CAGTTACTAAAATGTGCGGGTCC	59.874	47.826	0.00	0.00	0.00	4.46
705	879	3.075884	GTTACTAAAATGTGCGGGTCCA	58.924	45.455	0.00	0.00	0.00	4.02
716	921	2.021722	CGGGTCCAAATATGCACGG	58.978	57.895	0.00	0.00	0.00	4.94
747	952	8.210946	TCTTATGATCGATTGGTTTTGTCCTAT	58.789	33.333	0.00	0.00	0.00	2.57
810	1015	4.236527	AGGTAGCCCTCGAAAAATCAAT	57.763	40.909	0.00	0.00	35.62	2.57
858	1063	1.242665	TGCGCAGACAATTCATGGCA	61.243	50.000	5.66	0.00	40.75	4.92
860	1065	1.470285	GCGCAGACAATTCATGGCAAT	60.470	47.619	0.30	0.00	40.75	3.56
941	1146	0.999406	CTCAAATACGCACCCACTCG	59.001	55.000	0.00	0.00	0.00	4.18
988	3774	2.456119	GCCGGTGATCACGAGCTTG	61.456	63.158	24.02	0.00	0.00	4.01
1236	4030	2.417239	TGAATGGAACGTATGAAACCGC	59.583	45.455	0.00	0.00	0.00	5.68
1330	4124	9.425248	AATGGAATAATGAACACCATGTATCTT	57.575	29.630	0.00	0.00	40.56	2.40
1351	4145	3.889196	TTCAGTGTATTGTTCAACCGC	57.111	42.857	0.00	0.00	0.00	5.68
1479	4273	6.599244	TGACATTGGTGCTCCTATTTTTCTAG	59.401	38.462	6.34	0.00	34.23	2.43
1481	4275	7.349598	ACATTGGTGCTCCTATTTTTCTAGAT	58.650	34.615	6.34	0.00	34.23	1.98
1623	5826	3.069586	TGCTCATAGGGATAGGTTGTTCG	59.930	47.826	0.00	0.00	0.00	3.95
1732	5936	9.496873	TCAAAAGATAGAAAACAATAACCGAGA	57.503	29.630	0.00	0.00	0.00	4.04
1762	5966	3.129988	CGAGAATACCACTAACCCGAAGT	59.870	47.826	0.00	0.00	0.00	3.01
1807	6011	2.093128	ACCAAACATAAGGCGACCTAGG	60.093	50.000	7.41	7.41	31.13	3.02
1933	6137	0.982852	TGGGTCATGGAGCTCGGATT	60.983	55.000	7.83	0.00	0.00	3.01
2023	7826	0.548031	TCCATTCCACATCAGAGCCC	59.452	55.000	0.00	0.00	0.00	5.19
2024	7827	0.466922	CCATTCCACATCAGAGCCCC	60.467	60.000	0.00	0.00	0.00	5.80
2041	7844	3.330998	AGCCCCTAAGAAGCTTTTGTACT	59.669	43.478	0.00	0.00	31.27	2.73
2142	7945	2.352127	GCAAGACAATGAGGCCAAACTC	60.352	50.000	5.01	0.00	37.99	3.01
2146	7949	2.415512	GACAATGAGGCCAAACTCGTAC	59.584	50.000	5.01	0.00	40.39	3.67
2160	7963	6.073222	CCAAACTCGTACTTTTCTGTGCTAAT	60.073	38.462	0.00	0.00	0.00	1.73
2170	7973	8.511604	ACTTTTCTGTGCTAATAATGCATACT	57.488	30.769	0.00	0.00	42.69	2.12
2176	7979	9.045223	TCTGTGCTAATAATGCATACTACAAAG	57.955	33.333	0.00	0.00	42.69	2.77

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	4.081406	TCACCTATTTGCATGTTTCTGCT	58.919	39.130	0.00	0.00	42.75	4.24
23	24	5.581126	TGGATCACCTATTTGCATGTTTC	57.419	39.130	0.00	0.00	37.04	2.78
29	30	4.787135	TGGTATGGATCACCTATTTGCA	57.213	40.909	0.00	0.00	36.96	4.08
30	31	6.375455	CCTAATGGTATGGATCACCTATTTGC	59.625	42.308	0.00	0.00	36.96	3.68
126	133	5.336055	CCCAGGATCTAGTTCTGTATTAGCG	60.336	48.000	0.97	0.00	0.00	4.26
232	312	0.629596	TACTGGAGGAGATCGGGTGT	59.370	55.000	0.00	0.00	0.00	4.16
477	591	6.515043	AACAATTTTTGAATCGCAGAACAG	57.485	33.333	0.00	0.00	43.58	3.16
535	674	9.843334	ACGTGTTTCTTAAAAATACTTTTGTGA	57.157	25.926	0.00	0.00	35.50	3.58
552	691	9.965748	CAAACATAAAATGAAAAACGTGTTTCT	57.034	25.926	27.06	12.90	36.68	2.52
553	692	9.748100	ACAAACATAAAATGAAAAACGTGTTTC	57.252	25.926	21.94	21.94	36.68	2.78
589	728	4.277476	TCTCTGGCTTGTTTTCTCCAAAA	58.723	39.130	0.00	0.00	0.00	2.44
590	729	3.897239	TCTCTGGCTTGTTTTCTCCAAA	58.103	40.909	0.00	0.00	0.00	3.28
591	730	3.576078	TCTCTGGCTTGTTTTCTCCAA	57.424	42.857	0.00	0.00	0.00	3.53
592	731	3.576078	TTCTCTGGCTTGTTTTCTCCA	57.424	42.857	0.00	0.00	0.00	3.86
593	732	3.126000	CGATTCTCTGGCTTGTTTTCTCC	59.874	47.826	0.00	0.00	0.00	3.71
595	734	2.485814	GCGATTCTCTGGCTTGTTTTCT	59.514	45.455	0.00	0.00	0.00	2.52
597	736	2.508526	AGCGATTCTCTGGCTTGTTTT	58.491	42.857	0.00	0.00	35.00	2.43
598	737	2.191128	AGCGATTCTCTGGCTTGTTT	57.809	45.000	0.00	0.00	35.00	2.83
599	738	2.028112	TGTAGCGATTCTCTGGCTTGTT	60.028	45.455	0.00	0.00	39.85	2.83
600	739	1.550524	TGTAGCGATTCTCTGGCTTGT	59.449	47.619	0.00	0.00	39.85	3.16
602	741	2.028112	TGTTGTAGCGATTCTCTGGCTT	60.028	45.455	0.00	0.00	39.85	4.35
603	742	1.550524	TGTTGTAGCGATTCTCTGGCT	59.449	47.619	0.00	0.00	42.21	4.75
604	743	1.661112	GTGTTGTAGCGATTCTCTGGC	59.339	52.381	0.00	0.00	0.00	4.85
607	746	7.849804	AATAAATGTGTTGTAGCGATTCTCT	57.150	32.000	0.00	0.00	0.00	3.10
608	747	8.895932	AAAATAAATGTGTTGTAGCGATTCTC	57.104	30.769	0.00	0.00	0.00	2.87
609	748	9.988350	CTAAAATAAATGTGTTGTAGCGATTCT	57.012	29.630	0.00	0.00	0.00	2.40
610	749	9.982291	TCTAAAATAAATGTGTTGTAGCGATTC	57.018	29.630	0.00	0.00	0.00	2.52
635	809	7.879070	TCCATGCTGCAGAGATTTATTTAATC	58.121	34.615	20.43	0.00	42.51	1.75
639	813	6.534475	TTTCCATGCTGCAGAGATTTATTT	57.466	33.333	20.43	0.00	0.00	1.40
642	816	5.766670	CCTATTTCCATGCTGCAGAGATTTA	59.233	40.000	20.43	0.00	0.00	1.40
647	821	2.228059	CCCTATTTCCATGCTGCAGAG	58.772	52.381	20.43	6.06	0.00	3.35
649	823	0.672342	GCCCTATTTCCATGCTGCAG	59.328	55.000	10.11	10.11	0.00	4.41
651	825	1.656441	CGCCCTATTTCCATGCTGC	59.344	57.895	0.00	0.00	0.00	5.25
652	826	1.799258	GCCGCCCTATTTCCATGCTG	61.799	60.000	0.00	0.00	0.00	4.41
654	828	2.564721	GGCCGCCCTATTTCCATGC	61.565	63.158	0.00	0.00	0.00	4.06
655	829	2.260869	CGGCCGCCCTATTTCCATG	61.261	63.158	14.67	0.00	0.00	3.66
656	830	2.113139	CGGCCGCCCTATTTCCAT	59.887	61.111	14.67	0.00	0.00	3.41
657	831	4.183858	CCGGCCGCCCTATTTCCA	62.184	66.667	22.85	0.00	0.00	3.53
659	833	4.564110	AGCCGGCCGCCCTATTTC	62.564	66.667	26.15	0.14	38.78	2.17
660	834	4.564110	GAGCCGGCCGCCCTATTT	62.564	66.667	26.15	0.00	38.78	1.40
669	843	3.072486	TAACTGTAGCGAGCCGGCC	62.072	63.158	26.15	14.23	0.00	6.13
670	844	1.877165	GTAACTGTAGCGAGCCGGC	60.877	63.158	21.89	21.89	0.00	6.13
671	845	1.019673	TAGTAACTGTAGCGAGCCGG	58.980	55.000	0.00	0.00	0.00	6.13
673	847	4.868734	ACATTTTAGTAACTGTAGCGAGCC	59.131	41.667	0.00	0.00	0.00	4.70
674	848	5.724223	GCACATTTTAGTAACTGTAGCGAGC	60.724	44.000	0.00	0.00	0.00	5.03
676	850	4.325204	CGCACATTTTAGTAACTGTAGCGA	59.675	41.667	21.25	0.00	41.28	4.93
678	852	4.201783	CCCGCACATTTTAGTAACTGTAGC	60.202	45.833	0.00	4.25	0.00	3.58
679	853	4.933400	ACCCGCACATTTTAGTAACTGTAG	59.067	41.667	0.00	0.00	0.00	2.74
680	854	4.897140	ACCCGCACATTTTAGTAACTGTA	58.103	39.130	0.00	0.00	0.00	2.74
684	858	3.075884	TGGACCCGCACATTTTAGTAAC	58.924	45.455	0.00	0.00	0.00	2.50
685	859	3.420300	TGGACCCGCACATTTTAGTAA	57.580	42.857	0.00	0.00	0.00	2.24
689	863	4.440802	GCATATTTGGACCCGCACATTTTA	60.441	41.667	0.00	0.00	0.00	1.52
690	864	3.678529	GCATATTTGGACCCGCACATTTT	60.679	43.478	0.00	0.00	0.00	1.82
691	865	2.159114	GCATATTTGGACCCGCACATTT	60.159	45.455	0.00	0.00	0.00	2.32
692	866	1.408702	GCATATTTGGACCCGCACATT	59.591	47.619	0.00	0.00	0.00	2.71
694	868	0.322906	TGCATATTTGGACCCGCACA	60.323	50.000	0.00	0.00	0.00	4.57
695	869	0.100503	GTGCATATTTGGACCCGCAC	59.899	55.000	0.00	0.00	42.41	5.34
696	870	1.372838	CGTGCATATTTGGACCCGCA	61.373	55.000	2.40	0.00	40.81	5.69
697	871	1.355210	CGTGCATATTTGGACCCGC	59.645	57.895	2.40	0.00	40.81	6.13
698	872	0.746563	ACCGTGCATATTTGGACCCG	60.747	55.000	2.40	0.00	40.81	5.28
699	873	1.021968	GACCGTGCATATTTGGACCC	58.978	55.000	2.40	0.00	40.81	4.46
700	874	1.400494	GTGACCGTGCATATTTGGACC	59.600	52.381	2.40	0.00	40.81	4.46
701	875	2.351726	GAGTGACCGTGCATATTTGGAC	59.648	50.000	0.00	0.00	40.51	4.02
702	876	2.236146	AGAGTGACCGTGCATATTTGGA	59.764	45.455	0.00	0.00	0.00	3.53
703	877	2.632377	AGAGTGACCGTGCATATTTGG	58.368	47.619	0.00	0.00	0.00	3.28
704	878	5.523552	TCATAAGAGTGACCGTGCATATTTG	59.476	40.000	0.00	0.00	0.00	2.32
705	879	5.670485	TCATAAGAGTGACCGTGCATATTT	58.330	37.500	0.00	0.00	0.00	1.40
716	921	6.910536	AAACCAATCGATCATAAGAGTGAC	57.089	37.500	0.00	0.00	34.79	3.67
734	939	3.181442	TGGACGGAAATAGGACAAAACCA	60.181	43.478	0.00	0.00	0.00	3.67
810	1015	5.373222	ACACCTTGTTTGCTCAGTTATGTA	58.627	37.500	0.00	0.00	0.00	2.29
921	1126	0.727398	GAGTGGGTGCGTATTTGAGC	59.273	55.000	0.00	0.00	0.00	4.26
941	1146	5.010415	ACACGTATGGAGGTAATAGTTAGCC	59.990	44.000	0.00	0.00	34.26	3.93
988	3774	1.364626	CCGCTCATCCTGTTGACTGC	61.365	60.000	0.00	0.00	0.00	4.40
1236	4030	1.439353	GGTGGAGCGTACATGCATGG	61.439	60.000	29.41	13.76	37.31	3.66
1329	4123	4.096532	TGCGGTTGAACAATACACTGAAAA	59.903	37.500	0.00	0.00	0.00	2.29
1330	4124	3.628032	TGCGGTTGAACAATACACTGAAA	59.372	39.130	0.00	0.00	0.00	2.69
1351	4145	4.822685	AAGGAGAGGAGCATAGCATATG	57.177	45.455	0.00	0.00	0.00	1.78
1490	4284	8.230486	GCATTGAATTAATATCGTCGGAAAGAT	58.770	33.333	0.00	3.31	0.00	2.40
1623	5826	4.820894	ACACTCAACCCTATGAACCTAC	57.179	45.455	0.00	0.00	0.00	3.18
1703	5907	9.543018	CGGTTATTGTTTTCTATCTTTTGACTC	57.457	33.333	0.00	0.00	0.00	3.36
1732	5936	5.406477	GGTTAGTGGTATTCTCGTCGTTTTT	59.594	40.000	0.00	0.00	0.00	1.94
1762	5966	9.391006	GGTATAGTGACTTGTTTTCATATTCCA	57.609	33.333	0.00	0.00	0.00	3.53
1933	6137	0.965866	CCTCGTGGTCTACAGGCAGA	60.966	60.000	0.00	0.00	35.01	4.26
2119	7922	0.961019	TTGGCCTCATTGTCTTGCAC	59.039	50.000	3.32	0.00	0.00	4.57
2142	7945	6.771076	TGCATTATTAGCACAGAAAAGTACG	58.229	36.000	0.00	0.00	37.02	3.67
2146	7949	9.869844	GTAGTATGCATTATTAGCACAGAAAAG	57.130	33.333	3.54	0.00	45.95	2.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.