Multiple sequence alignment - TraesCS7D01G103500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G103500 chr7D 100.000 2894 0 0 639 3532 63383160 63380267 0.000000e+00 5345.0
1 TraesCS7D01G103500 chr7D 100.000 295 0 0 1 295 63383798 63383504 2.400000e-151 545.0
2 TraesCS7D01G103500 chr7B 88.085 1838 135 39 968 2748 3701859 3700049 0.000000e+00 2104.0
3 TraesCS7D01G103500 chr7B 87.500 496 55 4 3037 3532 3699483 3698995 1.840000e-157 566.0
4 TraesCS7D01G103500 chr7A 88.676 1095 71 24 1054 2120 66171760 66170691 0.000000e+00 1286.0
5 TraesCS7D01G103500 chr7A 91.789 889 53 5 2176 3059 66170547 66169674 0.000000e+00 1219.0
6 TraesCS7D01G103500 chr7A 91.126 462 25 10 3066 3514 66169567 66169109 2.330000e-171 612.0
7 TraesCS7D01G103500 chr7A 94.595 37 2 0 2708 2744 66170110 66170074 1.370000e-04 58.4
8 TraesCS7D01G103500 chr1A 93.182 44 2 1 2784 2827 504961415 504961457 2.940000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G103500 chr7D 63380267 63383798 3531 True 2945.00 5345 100.0000 1 3532 2 chr7D.!!$R1 3531
1 TraesCS7D01G103500 chr7B 3698995 3701859 2864 True 1335.00 2104 87.7925 968 3532 2 chr7B.!!$R1 2564
2 TraesCS7D01G103500 chr7A 66169109 66171760 2651 True 793.85 1286 91.5465 1054 3514 4 chr7A.!!$R1 2460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 941 0.035152 ATGTTCAGCCCATTCAGCGA 60.035 50.0 0.0 0.0 34.64 4.93 F
1647 1689 0.165295 CAGTGCTGATGCTGTTGACG 59.835 55.0 0.0 0.0 40.48 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2469 0.819259 TGACCAAGTGTTGCTCCTGC 60.819 55.0 0.0 0.0 40.2 4.85 R
2825 3154 0.951558 AATTGTGCCAGTGGACGTTC 59.048 50.0 15.2 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 8.362464 AGTATGTATAGAGAAACTGTTGACCA 57.638 34.615 0.00 0.00 0.00 4.02
81 82 8.982723 AGTATGTATAGAGAAACTGTTGACCAT 58.017 33.333 0.00 0.00 0.00 3.55
82 83 9.601217 GTATGTATAGAGAAACTGTTGACCATT 57.399 33.333 0.00 0.00 0.00 3.16
88 89 9.739276 ATAGAGAAACTGTTGACCATTTATGAA 57.261 29.630 0.00 0.00 0.00 2.57
89 90 8.463930 AGAGAAACTGTTGACCATTTATGAAA 57.536 30.769 0.00 0.00 0.00 2.69
90 91 8.912988 AGAGAAACTGTTGACCATTTATGAAAA 58.087 29.630 0.00 0.00 0.00 2.29
91 92 9.528018 GAGAAACTGTTGACCATTTATGAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
119 120 9.471084 AAATGTTAAACTCGTATTGGAAAAAGG 57.529 29.630 0.00 0.00 0.00 3.11
120 121 7.804843 TGTTAAACTCGTATTGGAAAAAGGA 57.195 32.000 0.00 0.00 0.00 3.36
121 122 8.223177 TGTTAAACTCGTATTGGAAAAAGGAA 57.777 30.769 0.00 0.00 0.00 3.36
122 123 8.684520 TGTTAAACTCGTATTGGAAAAAGGAAA 58.315 29.630 0.00 0.00 0.00 3.13
123 124 9.518906 GTTAAACTCGTATTGGAAAAAGGAAAA 57.481 29.630 0.00 0.00 0.00 2.29
125 126 8.642908 AAACTCGTATTGGAAAAAGGAAAAAG 57.357 30.769 0.00 0.00 0.00 2.27
126 127 7.576861 ACTCGTATTGGAAAAAGGAAAAAGA 57.423 32.000 0.00 0.00 0.00 2.52
127 128 8.002984 ACTCGTATTGGAAAAAGGAAAAAGAA 57.997 30.769 0.00 0.00 0.00 2.52
128 129 8.471609 ACTCGTATTGGAAAAAGGAAAAAGAAA 58.528 29.630 0.00 0.00 0.00 2.52
129 130 8.637281 TCGTATTGGAAAAAGGAAAAAGAAAC 57.363 30.769 0.00 0.00 0.00 2.78
130 131 7.707464 TCGTATTGGAAAAAGGAAAAAGAAACC 59.293 33.333 0.00 0.00 0.00 3.27
131 132 7.492994 CGTATTGGAAAAAGGAAAAAGAAACCA 59.507 33.333 0.00 0.00 0.00 3.67
132 133 9.168451 GTATTGGAAAAAGGAAAAAGAAACCAA 57.832 29.630 0.00 0.00 37.91 3.67
133 134 8.642935 ATTGGAAAAAGGAAAAAGAAACCAAA 57.357 26.923 0.00 0.00 37.26 3.28
134 135 7.680442 TGGAAAAAGGAAAAAGAAACCAAAG 57.320 32.000 0.00 0.00 0.00 2.77
135 136 7.454225 TGGAAAAAGGAAAAAGAAACCAAAGA 58.546 30.769 0.00 0.00 0.00 2.52
136 137 7.939588 TGGAAAAAGGAAAAAGAAACCAAAGAA 59.060 29.630 0.00 0.00 0.00 2.52
137 138 8.788806 GGAAAAAGGAAAAAGAAACCAAAGAAA 58.211 29.630 0.00 0.00 0.00 2.52
185 186 9.859152 AAAAATGGATAAAAACCATGAAAGGAA 57.141 25.926 0.00 0.00 45.89 3.36
186 187 8.846943 AAATGGATAAAAACCATGAAAGGAAC 57.153 30.769 0.00 0.00 45.89 3.62
187 188 6.985653 TGGATAAAAACCATGAAAGGAACA 57.014 33.333 0.00 0.00 32.03 3.18
188 189 7.366847 TGGATAAAAACCATGAAAGGAACAA 57.633 32.000 0.00 0.00 32.03 2.83
189 190 7.796054 TGGATAAAAACCATGAAAGGAACAAA 58.204 30.769 0.00 0.00 32.03 2.83
190 191 8.267894 TGGATAAAAACCATGAAAGGAACAAAA 58.732 29.630 0.00 0.00 32.03 2.44
191 192 9.114952 GGATAAAAACCATGAAAGGAACAAAAA 57.885 29.630 0.00 0.00 0.00 1.94
193 194 9.898152 ATAAAAACCATGAAAGGAACAAAAAGA 57.102 25.926 0.00 0.00 0.00 2.52
194 195 8.628630 AAAAACCATGAAAGGAACAAAAAGAA 57.371 26.923 0.00 0.00 0.00 2.52
195 196 8.628630 AAAACCATGAAAGGAACAAAAAGAAA 57.371 26.923 0.00 0.00 0.00 2.52
196 197 7.609760 AACCATGAAAGGAACAAAAAGAAAC 57.390 32.000 0.00 0.00 0.00 2.78
197 198 6.112734 ACCATGAAAGGAACAAAAAGAAACC 58.887 36.000 0.00 0.00 0.00 3.27
198 199 6.112058 CCATGAAAGGAACAAAAAGAAACCA 58.888 36.000 0.00 0.00 0.00 3.67
199 200 6.597280 CCATGAAAGGAACAAAAAGAAACCAA 59.403 34.615 0.00 0.00 0.00 3.67
200 201 7.120432 CCATGAAAGGAACAAAAAGAAACCAAA 59.880 33.333 0.00 0.00 0.00 3.28
201 202 8.510505 CATGAAAGGAACAAAAAGAAACCAAAA 58.489 29.630 0.00 0.00 0.00 2.44
202 203 8.093659 TGAAAGGAACAAAAAGAAACCAAAAG 57.906 30.769 0.00 0.00 0.00 2.27
203 204 7.174080 TGAAAGGAACAAAAAGAAACCAAAAGG 59.826 33.333 0.00 0.00 0.00 3.11
204 205 6.367374 AGGAACAAAAAGAAACCAAAAGGA 57.633 33.333 0.00 0.00 0.00 3.36
205 206 6.406370 AGGAACAAAAAGAAACCAAAAGGAG 58.594 36.000 0.00 0.00 0.00 3.69
206 207 5.584649 GGAACAAAAAGAAACCAAAAGGAGG 59.415 40.000 0.00 0.00 0.00 4.30
207 208 6.367374 AACAAAAAGAAACCAAAAGGAGGA 57.633 33.333 0.00 0.00 0.00 3.71
208 209 5.730550 ACAAAAAGAAACCAAAAGGAGGAC 58.269 37.500 0.00 0.00 0.00 3.85
209 210 4.649088 AAAAGAAACCAAAAGGAGGACG 57.351 40.909 0.00 0.00 0.00 4.79
210 211 3.570912 AAGAAACCAAAAGGAGGACGA 57.429 42.857 0.00 0.00 0.00 4.20
211 212 3.570912 AGAAACCAAAAGGAGGACGAA 57.429 42.857 0.00 0.00 0.00 3.85
212 213 3.893521 AGAAACCAAAAGGAGGACGAAA 58.106 40.909 0.00 0.00 0.00 3.46
213 214 3.883489 AGAAACCAAAAGGAGGACGAAAG 59.117 43.478 0.00 0.00 0.00 2.62
214 215 3.570912 AACCAAAAGGAGGACGAAAGA 57.429 42.857 0.00 0.00 0.00 2.52
215 216 3.570912 ACCAAAAGGAGGACGAAAGAA 57.429 42.857 0.00 0.00 0.00 2.52
216 217 3.477530 ACCAAAAGGAGGACGAAAGAAG 58.522 45.455 0.00 0.00 0.00 2.85
217 218 3.135895 ACCAAAAGGAGGACGAAAGAAGA 59.864 43.478 0.00 0.00 0.00 2.87
218 219 3.748568 CCAAAAGGAGGACGAAAGAAGAG 59.251 47.826 0.00 0.00 0.00 2.85
219 220 4.503296 CCAAAAGGAGGACGAAAGAAGAGA 60.503 45.833 0.00 0.00 0.00 3.10
220 221 3.945981 AAGGAGGACGAAAGAAGAGAC 57.054 47.619 0.00 0.00 0.00 3.36
221 222 2.877866 AGGAGGACGAAAGAAGAGACA 58.122 47.619 0.00 0.00 0.00 3.41
222 223 3.231818 AGGAGGACGAAAGAAGAGACAA 58.768 45.455 0.00 0.00 0.00 3.18
223 224 3.641906 AGGAGGACGAAAGAAGAGACAAA 59.358 43.478 0.00 0.00 0.00 2.83
224 225 4.101119 AGGAGGACGAAAGAAGAGACAAAA 59.899 41.667 0.00 0.00 0.00 2.44
225 226 4.814771 GGAGGACGAAAGAAGAGACAAAAA 59.185 41.667 0.00 0.00 0.00 1.94
226 227 5.050023 GGAGGACGAAAGAAGAGACAAAAAG 60.050 44.000 0.00 0.00 0.00 2.27
227 228 5.671493 AGGACGAAAGAAGAGACAAAAAGA 58.329 37.500 0.00 0.00 0.00 2.52
228 229 6.292150 AGGACGAAAGAAGAGACAAAAAGAT 58.708 36.000 0.00 0.00 0.00 2.40
229 230 6.203723 AGGACGAAAGAAGAGACAAAAAGATG 59.796 38.462 0.00 0.00 0.00 2.90
230 231 6.017852 GGACGAAAGAAGAGACAAAAAGATGT 60.018 38.462 0.00 0.00 35.90 3.06
231 232 7.170998 GGACGAAAGAAGAGACAAAAAGATGTA 59.829 37.037 0.00 0.00 32.57 2.29
232 233 8.608844 ACGAAAGAAGAGACAAAAAGATGTAT 57.391 30.769 0.00 0.00 32.57 2.29
233 234 9.706691 ACGAAAGAAGAGACAAAAAGATGTATA 57.293 29.630 0.00 0.00 32.57 1.47
264 265 7.873719 AAAATAAAACCAAAGAAAACCAGGG 57.126 32.000 0.00 0.00 0.00 4.45
265 266 3.924114 AAAACCAAAGAAAACCAGGGG 57.076 42.857 0.00 0.00 0.00 4.79
266 267 2.858787 AACCAAAGAAAACCAGGGGA 57.141 45.000 0.00 0.00 0.00 4.81
267 268 2.858787 ACCAAAGAAAACCAGGGGAA 57.141 45.000 0.00 0.00 0.00 3.97
268 269 3.123392 ACCAAAGAAAACCAGGGGAAA 57.877 42.857 0.00 0.00 0.00 3.13
269 270 3.455849 ACCAAAGAAAACCAGGGGAAAA 58.544 40.909 0.00 0.00 0.00 2.29
270 271 3.847184 ACCAAAGAAAACCAGGGGAAAAA 59.153 39.130 0.00 0.00 0.00 1.94
271 272 4.476846 ACCAAAGAAAACCAGGGGAAAAAT 59.523 37.500 0.00 0.00 0.00 1.82
272 273 5.063204 CCAAAGAAAACCAGGGGAAAAATC 58.937 41.667 0.00 0.00 0.00 2.17
273 274 4.974645 AAGAAAACCAGGGGAAAAATCC 57.025 40.909 0.00 0.00 0.00 3.01
285 286 3.883489 GGGAAAAATCCCTGAGATAACCG 59.117 47.826 6.65 0.00 46.39 4.44
286 287 4.384868 GGGAAAAATCCCTGAGATAACCGA 60.385 45.833 6.65 0.00 46.39 4.69
287 288 5.190677 GGAAAAATCCCTGAGATAACCGAA 58.809 41.667 0.00 0.00 33.66 4.30
288 289 5.828328 GGAAAAATCCCTGAGATAACCGAAT 59.172 40.000 0.00 0.00 33.66 3.34
289 290 6.996282 GGAAAAATCCCTGAGATAACCGAATA 59.004 38.462 0.00 0.00 33.66 1.75
290 291 7.173390 GGAAAAATCCCTGAGATAACCGAATAG 59.827 40.741 0.00 0.00 33.66 1.73
291 292 6.996180 AAATCCCTGAGATAACCGAATAGA 57.004 37.500 0.00 0.00 33.66 1.98
292 293 6.996180 AATCCCTGAGATAACCGAATAGAA 57.004 37.500 0.00 0.00 33.66 2.10
293 294 5.786264 TCCCTGAGATAACCGAATAGAAC 57.214 43.478 0.00 0.00 0.00 3.01
294 295 5.205821 TCCCTGAGATAACCGAATAGAACA 58.794 41.667 0.00 0.00 0.00 3.18
658 659 3.751479 AGAAAATGCCCAGTGAAAACC 57.249 42.857 0.00 0.00 0.00 3.27
659 660 2.035832 AGAAAATGCCCAGTGAAAACCG 59.964 45.455 0.00 0.00 0.00 4.44
660 661 1.698506 AAATGCCCAGTGAAAACCGA 58.301 45.000 0.00 0.00 0.00 4.69
661 662 1.247567 AATGCCCAGTGAAAACCGAG 58.752 50.000 0.00 0.00 0.00 4.63
662 663 0.400213 ATGCCCAGTGAAAACCGAGA 59.600 50.000 0.00 0.00 0.00 4.04
663 664 0.181587 TGCCCAGTGAAAACCGAGAA 59.818 50.000 0.00 0.00 0.00 2.87
664 665 1.314730 GCCCAGTGAAAACCGAGAAA 58.685 50.000 0.00 0.00 0.00 2.52
665 666 1.266989 GCCCAGTGAAAACCGAGAAAG 59.733 52.381 0.00 0.00 0.00 2.62
666 667 2.846193 CCCAGTGAAAACCGAGAAAGA 58.154 47.619 0.00 0.00 0.00 2.52
667 668 3.211045 CCCAGTGAAAACCGAGAAAGAA 58.789 45.455 0.00 0.00 0.00 2.52
668 669 3.630312 CCCAGTGAAAACCGAGAAAGAAA 59.370 43.478 0.00 0.00 0.00 2.52
669 670 4.097286 CCCAGTGAAAACCGAGAAAGAAAA 59.903 41.667 0.00 0.00 0.00 2.29
670 671 5.393678 CCCAGTGAAAACCGAGAAAGAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
722 723 8.996651 AAGGAAAAGAATCTAAGAAACCAAGA 57.003 30.769 0.00 0.00 0.00 3.02
723 724 8.996651 AGGAAAAGAATCTAAGAAACCAAGAA 57.003 30.769 0.00 0.00 0.00 2.52
724 725 9.421399 AGGAAAAGAATCTAAGAAACCAAGAAA 57.579 29.630 0.00 0.00 0.00 2.52
727 728 9.817809 AAAAGAATCTAAGAAACCAAGAAAACC 57.182 29.630 0.00 0.00 0.00 3.27
728 729 8.533569 AAGAATCTAAGAAACCAAGAAAACCA 57.466 30.769 0.00 0.00 0.00 3.67
729 730 8.171164 AGAATCTAAGAAACCAAGAAAACCAG 57.829 34.615 0.00 0.00 0.00 4.00
730 731 6.901081 ATCTAAGAAACCAAGAAAACCAGG 57.099 37.500 0.00 0.00 0.00 4.45
731 732 5.762279 TCTAAGAAACCAAGAAAACCAGGT 58.238 37.500 0.00 0.00 35.47 4.00
732 733 6.902408 TCTAAGAAACCAAGAAAACCAGGTA 58.098 36.000 0.00 0.00 33.15 3.08
733 734 6.996282 TCTAAGAAACCAAGAAAACCAGGTAG 59.004 38.462 0.00 0.00 33.15 3.18
734 735 5.382664 AGAAACCAAGAAAACCAGGTAGA 57.617 39.130 0.00 0.00 33.15 2.59
735 736 5.762279 AGAAACCAAGAAAACCAGGTAGAA 58.238 37.500 0.00 0.00 33.15 2.10
736 737 6.192044 AGAAACCAAGAAAACCAGGTAGAAA 58.808 36.000 0.00 0.00 33.15 2.52
737 738 5.847111 AACCAAGAAAACCAGGTAGAAAC 57.153 39.130 0.00 0.00 33.15 2.78
762 763 9.476202 ACCATAGAAACAAAAGTTTATGAAAGC 57.524 29.630 0.00 0.00 0.00 3.51
763 764 8.925700 CCATAGAAACAAAAGTTTATGAAAGCC 58.074 33.333 0.00 0.00 0.00 4.35
764 765 8.638565 CATAGAAACAAAAGTTTATGAAAGCCG 58.361 33.333 0.00 0.00 0.00 5.52
765 766 6.801575 AGAAACAAAAGTTTATGAAAGCCGA 58.198 32.000 0.00 0.00 0.00 5.54
766 767 6.918022 AGAAACAAAAGTTTATGAAAGCCGAG 59.082 34.615 0.00 0.00 0.00 4.63
767 768 6.385649 AACAAAAGTTTATGAAAGCCGAGA 57.614 33.333 0.00 0.00 0.00 4.04
768 769 6.002062 ACAAAAGTTTATGAAAGCCGAGAG 57.998 37.500 0.00 0.00 0.00 3.20
769 770 5.763204 ACAAAAGTTTATGAAAGCCGAGAGA 59.237 36.000 0.00 0.00 0.00 3.10
770 771 6.073003 ACAAAAGTTTATGAAAGCCGAGAGAG 60.073 38.462 0.00 0.00 0.00 3.20
771 772 5.407407 AAGTTTATGAAAGCCGAGAGAGA 57.593 39.130 0.00 0.00 0.00 3.10
772 773 5.407407 AGTTTATGAAAGCCGAGAGAGAA 57.593 39.130 0.00 0.00 0.00 2.87
773 774 5.794894 AGTTTATGAAAGCCGAGAGAGAAA 58.205 37.500 0.00 0.00 0.00 2.52
774 775 5.639931 AGTTTATGAAAGCCGAGAGAGAAAC 59.360 40.000 0.00 0.00 0.00 2.78
775 776 3.971245 ATGAAAGCCGAGAGAGAAACT 57.029 42.857 0.00 0.00 0.00 2.66
776 777 6.525578 TTATGAAAGCCGAGAGAGAAACTA 57.474 37.500 0.00 0.00 0.00 2.24
777 778 4.866508 TGAAAGCCGAGAGAGAAACTAA 57.133 40.909 0.00 0.00 0.00 2.24
778 779 4.810790 TGAAAGCCGAGAGAGAAACTAAG 58.189 43.478 0.00 0.00 0.00 2.18
779 780 4.523173 TGAAAGCCGAGAGAGAAACTAAGA 59.477 41.667 0.00 0.00 0.00 2.10
780 781 5.010719 TGAAAGCCGAGAGAGAAACTAAGAA 59.989 40.000 0.00 0.00 0.00 2.52
781 782 5.470047 AAGCCGAGAGAGAAACTAAGAAA 57.530 39.130 0.00 0.00 0.00 2.52
782 783 5.470047 AGCCGAGAGAGAAACTAAGAAAA 57.530 39.130 0.00 0.00 0.00 2.29
783 784 5.231702 AGCCGAGAGAGAAACTAAGAAAAC 58.768 41.667 0.00 0.00 0.00 2.43
784 785 4.389382 GCCGAGAGAGAAACTAAGAAAACC 59.611 45.833 0.00 0.00 0.00 3.27
785 786 4.621886 CCGAGAGAGAAACTAAGAAAACCG 59.378 45.833 0.00 0.00 0.00 4.44
786 787 4.621886 CGAGAGAGAAACTAAGAAAACCGG 59.378 45.833 0.00 0.00 0.00 5.28
787 788 5.539979 GAGAGAGAAACTAAGAAAACCGGT 58.460 41.667 0.00 0.00 0.00 5.28
788 789 5.298347 AGAGAGAAACTAAGAAAACCGGTG 58.702 41.667 8.52 0.00 0.00 4.94
789 790 5.070047 AGAGAGAAACTAAGAAAACCGGTGA 59.930 40.000 8.52 0.00 0.00 4.02
790 791 5.677567 AGAGAAACTAAGAAAACCGGTGAA 58.322 37.500 8.52 0.00 0.00 3.18
791 792 6.117488 AGAGAAACTAAGAAAACCGGTGAAA 58.883 36.000 8.52 0.00 0.00 2.69
792 793 6.600427 AGAGAAACTAAGAAAACCGGTGAAAA 59.400 34.615 8.52 0.00 0.00 2.29
793 794 7.121611 AGAGAAACTAAGAAAACCGGTGAAAAA 59.878 33.333 8.52 0.00 0.00 1.94
794 795 7.031372 AGAAACTAAGAAAACCGGTGAAAAAC 58.969 34.615 8.52 0.00 0.00 2.43
795 796 6.519679 AACTAAGAAAACCGGTGAAAAACT 57.480 33.333 8.52 0.00 0.00 2.66
796 797 5.886992 ACTAAGAAAACCGGTGAAAAACTG 58.113 37.500 8.52 0.00 34.63 3.16
797 798 5.648960 ACTAAGAAAACCGGTGAAAAACTGA 59.351 36.000 8.52 0.00 37.33 3.41
798 799 5.394224 AAGAAAACCGGTGAAAAACTGAA 57.606 34.783 8.52 0.00 37.33 3.02
799 800 4.993905 AGAAAACCGGTGAAAAACTGAAG 58.006 39.130 8.52 0.00 37.33 3.02
800 801 4.461431 AGAAAACCGGTGAAAAACTGAAGT 59.539 37.500 8.52 0.00 37.33 3.01
801 802 4.794278 AAACCGGTGAAAAACTGAAGTT 57.206 36.364 8.52 0.00 37.33 2.66
802 803 5.900865 AAACCGGTGAAAAACTGAAGTTA 57.099 34.783 8.52 0.00 37.33 2.24
803 804 6.459670 AAACCGGTGAAAAACTGAAGTTAT 57.540 33.333 8.52 0.00 37.33 1.89
804 805 7.571080 AAACCGGTGAAAAACTGAAGTTATA 57.429 32.000 8.52 0.00 37.33 0.98
805 806 7.754851 AACCGGTGAAAAACTGAAGTTATAT 57.245 32.000 8.52 0.00 37.33 0.86
806 807 7.373778 ACCGGTGAAAAACTGAAGTTATATC 57.626 36.000 6.12 0.00 37.33 1.63
807 808 6.938030 ACCGGTGAAAAACTGAAGTTATATCA 59.062 34.615 6.12 0.00 37.33 2.15
808 809 7.446013 ACCGGTGAAAAACTGAAGTTATATCAA 59.554 33.333 6.12 0.00 37.33 2.57
809 810 8.293867 CCGGTGAAAAACTGAAGTTATATCAAA 58.706 33.333 0.00 0.00 37.33 2.69
810 811 9.329913 CGGTGAAAAACTGAAGTTATATCAAAG 57.670 33.333 0.00 0.00 37.33 2.77
834 835 2.442212 AAACCCAAATAAAACCGGCG 57.558 45.000 0.00 0.00 0.00 6.46
835 836 1.618487 AACCCAAATAAAACCGGCGA 58.382 45.000 9.30 0.00 0.00 5.54
836 837 1.618487 ACCCAAATAAAACCGGCGAA 58.382 45.000 9.30 0.00 0.00 4.70
837 838 1.270274 ACCCAAATAAAACCGGCGAAC 59.730 47.619 9.30 0.00 0.00 3.95
838 839 1.269998 CCCAAATAAAACCGGCGAACA 59.730 47.619 9.30 0.00 0.00 3.18
839 840 2.288273 CCCAAATAAAACCGGCGAACAA 60.288 45.455 9.30 0.00 0.00 2.83
840 841 3.580731 CCAAATAAAACCGGCGAACAAT 58.419 40.909 9.30 0.00 0.00 2.71
841 842 4.380655 CCCAAATAAAACCGGCGAACAATA 60.381 41.667 9.30 0.00 0.00 1.90
842 843 5.162075 CCAAATAAAACCGGCGAACAATAA 58.838 37.500 9.30 0.00 0.00 1.40
843 844 5.808030 CCAAATAAAACCGGCGAACAATAAT 59.192 36.000 9.30 0.00 0.00 1.28
844 845 6.973474 CCAAATAAAACCGGCGAACAATAATA 59.027 34.615 9.30 0.00 0.00 0.98
845 846 7.488471 CCAAATAAAACCGGCGAACAATAATAA 59.512 33.333 9.30 0.00 0.00 1.40
846 847 8.528295 CAAATAAAACCGGCGAACAATAATAAG 58.472 33.333 9.30 0.00 0.00 1.73
847 848 5.883503 AAAACCGGCGAACAATAATAAGA 57.116 34.783 9.30 0.00 0.00 2.10
848 849 5.883503 AAACCGGCGAACAATAATAAGAA 57.116 34.783 9.30 0.00 0.00 2.52
849 850 4.870221 ACCGGCGAACAATAATAAGAAC 57.130 40.909 9.30 0.00 0.00 3.01
850 851 3.624410 ACCGGCGAACAATAATAAGAACC 59.376 43.478 9.30 0.00 0.00 3.62
851 852 3.302870 CCGGCGAACAATAATAAGAACCG 60.303 47.826 9.30 0.00 36.74 4.44
852 853 3.552699 CGGCGAACAATAATAAGAACCGA 59.447 43.478 0.00 0.00 39.22 4.69
853 854 4.033129 CGGCGAACAATAATAAGAACCGAA 59.967 41.667 0.00 0.00 39.22 4.30
854 855 5.499047 GGCGAACAATAATAAGAACCGAAG 58.501 41.667 0.00 0.00 0.00 3.79
855 856 5.292589 GGCGAACAATAATAAGAACCGAAGA 59.707 40.000 0.00 0.00 0.00 2.87
856 857 6.183360 GGCGAACAATAATAAGAACCGAAGAA 60.183 38.462 0.00 0.00 0.00 2.52
857 858 7.238571 GCGAACAATAATAAGAACCGAAGAAA 58.761 34.615 0.00 0.00 0.00 2.52
858 859 7.747357 GCGAACAATAATAAGAACCGAAGAAAA 59.253 33.333 0.00 0.00 0.00 2.29
859 860 9.601971 CGAACAATAATAAGAACCGAAGAAAAA 57.398 29.630 0.00 0.00 0.00 1.94
885 886 9.849166 AACAAAAGAAAACGTGAAATAGAAAGA 57.151 25.926 0.00 0.00 0.00 2.52
886 887 9.849166 ACAAAAGAAAACGTGAAATAGAAAGAA 57.151 25.926 0.00 0.00 0.00 2.52
890 891 9.849166 AAGAAAACGTGAAATAGAAAGAAAACA 57.151 25.926 0.00 0.00 0.00 2.83
891 892 9.849166 AGAAAACGTGAAATAGAAAGAAAACAA 57.151 25.926 0.00 0.00 0.00 2.83
894 895 9.849166 AAACGTGAAATAGAAAGAAAACAAAGA 57.151 25.926 0.00 0.00 0.00 2.52
895 896 9.849166 AACGTGAAATAGAAAGAAAACAAAGAA 57.151 25.926 0.00 0.00 0.00 2.52
896 897 9.849166 ACGTGAAATAGAAAGAAAACAAAGAAA 57.151 25.926 0.00 0.00 0.00 2.52
904 905 8.683550 AGAAAGAAAACAAAGAAAAACTACCG 57.316 30.769 0.00 0.00 0.00 4.02
905 906 8.301720 AGAAAGAAAACAAAGAAAAACTACCGT 58.698 29.630 0.00 0.00 0.00 4.83
906 907 9.558648 GAAAGAAAACAAAGAAAAACTACCGTA 57.441 29.630 0.00 0.00 0.00 4.02
907 908 9.911138 AAAGAAAACAAAGAAAAACTACCGTAA 57.089 25.926 0.00 0.00 0.00 3.18
911 912 9.955208 AAAACAAAGAAAAACTACCGTAATAGG 57.045 29.630 0.00 0.00 37.30 2.57
912 913 7.137490 ACAAAGAAAAACTACCGTAATAGGC 57.863 36.000 0.00 0.00 33.69 3.93
913 914 6.149973 ACAAAGAAAAACTACCGTAATAGGCC 59.850 38.462 0.00 0.00 33.69 5.19
914 915 4.436332 AGAAAAACTACCGTAATAGGCCG 58.564 43.478 0.00 0.00 33.69 6.13
919 920 3.552384 CCGTAATAGGCCGGCCCA 61.552 66.667 41.72 31.32 37.43 5.36
920 921 2.747686 CGTAATAGGCCGGCCCAT 59.252 61.111 41.72 32.20 36.58 4.00
921 922 1.546589 CCGTAATAGGCCGGCCCATA 61.547 60.000 41.72 28.52 37.43 2.74
922 923 0.539986 CGTAATAGGCCGGCCCATAT 59.460 55.000 41.72 29.44 36.58 1.78
923 924 1.742411 CGTAATAGGCCGGCCCATATG 60.742 57.143 41.72 29.46 36.58 1.78
924 925 1.280998 GTAATAGGCCGGCCCATATGT 59.719 52.381 41.72 24.75 36.58 2.29
925 926 0.777446 AATAGGCCGGCCCATATGTT 59.223 50.000 41.72 24.18 36.58 2.71
926 927 0.328258 ATAGGCCGGCCCATATGTTC 59.672 55.000 41.72 14.06 36.58 3.18
927 928 1.057275 TAGGCCGGCCCATATGTTCA 61.057 55.000 41.72 12.72 36.58 3.18
928 929 1.898574 GGCCGGCCCATATGTTCAG 60.899 63.158 36.64 0.00 0.00 3.02
929 930 2.555547 GCCGGCCCATATGTTCAGC 61.556 63.158 18.11 0.00 0.00 4.26
930 931 1.898574 CCGGCCCATATGTTCAGCC 60.899 63.158 0.00 11.37 40.33 4.85
931 932 1.898574 CGGCCCATATGTTCAGCCC 60.899 63.158 14.26 1.05 40.65 5.19
932 933 1.229927 GGCCCATATGTTCAGCCCA 59.770 57.895 10.62 0.00 37.66 5.36
933 934 0.178953 GGCCCATATGTTCAGCCCAT 60.179 55.000 10.62 0.00 37.66 4.00
934 935 1.708341 GCCCATATGTTCAGCCCATT 58.292 50.000 1.24 0.00 0.00 3.16
935 936 1.615392 GCCCATATGTTCAGCCCATTC 59.385 52.381 1.24 0.00 0.00 2.67
936 937 2.948115 CCCATATGTTCAGCCCATTCA 58.052 47.619 1.24 0.00 0.00 2.57
937 938 2.889045 CCCATATGTTCAGCCCATTCAG 59.111 50.000 1.24 0.00 0.00 3.02
938 939 2.295349 CCATATGTTCAGCCCATTCAGC 59.705 50.000 1.24 0.00 0.00 4.26
939 940 1.667236 TATGTTCAGCCCATTCAGCG 58.333 50.000 0.00 0.00 34.64 5.18
940 941 0.035152 ATGTTCAGCCCATTCAGCGA 60.035 50.000 0.00 0.00 34.64 4.93
941 942 0.674581 TGTTCAGCCCATTCAGCGAG 60.675 55.000 0.00 0.00 34.64 5.03
942 943 0.391661 GTTCAGCCCATTCAGCGAGA 60.392 55.000 0.00 0.00 34.64 4.04
943 944 0.543277 TTCAGCCCATTCAGCGAGAT 59.457 50.000 0.00 0.00 34.64 2.75
944 945 1.413118 TCAGCCCATTCAGCGAGATA 58.587 50.000 0.00 0.00 34.64 1.98
945 946 1.973515 TCAGCCCATTCAGCGAGATAT 59.026 47.619 0.00 0.00 34.64 1.63
946 947 2.028658 TCAGCCCATTCAGCGAGATATC 60.029 50.000 0.00 0.00 34.64 1.63
947 948 1.067283 AGCCCATTCAGCGAGATATCG 60.067 52.381 5.13 5.13 34.64 2.92
974 975 3.810896 GTTCCCATGCCGCCGAAC 61.811 66.667 0.00 0.00 0.00 3.95
1031 1032 7.130917 CAGCAGATAAGATTTTGATAGCACAC 58.869 38.462 0.00 0.00 0.00 3.82
1032 1033 6.018425 AGCAGATAAGATTTTGATAGCACACG 60.018 38.462 0.00 0.00 0.00 4.49
1049 1050 3.785859 GGCCGAGTGCTGATCCCA 61.786 66.667 0.00 0.00 40.92 4.37
1064 1065 4.641645 CCACAGCGGCCACAGGAA 62.642 66.667 2.24 0.00 0.00 3.36
1111 1112 4.343239 GCAGCCCAGGATAAGATTCAAAAT 59.657 41.667 0.00 0.00 0.00 1.82
1112 1113 5.536161 GCAGCCCAGGATAAGATTCAAAATA 59.464 40.000 0.00 0.00 0.00 1.40
1113 1114 6.210185 GCAGCCCAGGATAAGATTCAAAATAT 59.790 38.462 0.00 0.00 0.00 1.28
1388 1422 1.135517 GTCAGCGTGAGTCCTTCTCTC 60.136 57.143 0.00 0.00 43.13 3.20
1395 1433 0.823460 GAGTCCTTCTCTCCTGCCTG 59.177 60.000 0.00 0.00 39.86 4.85
1421 1459 3.465871 GGCCATTTGTTCTGCTTTTTGA 58.534 40.909 0.00 0.00 0.00 2.69
1427 1466 5.964887 TTTGTTCTGCTTTTTGATTTCCG 57.035 34.783 0.00 0.00 0.00 4.30
1434 1473 2.977829 GCTTTTTGATTTCCGTTCGTCC 59.022 45.455 0.00 0.00 0.00 4.79
1437 1476 0.320073 TTGATTTCCGTTCGTCCGCT 60.320 50.000 0.00 0.00 0.00 5.52
1640 1682 2.360852 GTGCCCAGTGCTGATGCT 60.361 61.111 0.02 0.00 42.00 3.79
1646 1688 0.520404 CCAGTGCTGATGCTGTTGAC 59.480 55.000 0.02 0.00 40.48 3.18
1647 1689 0.165295 CAGTGCTGATGCTGTTGACG 59.835 55.000 0.00 0.00 40.48 4.35
1648 1690 1.154338 GTGCTGATGCTGTTGACGC 60.154 57.895 0.00 0.00 40.48 5.19
1692 1734 2.659016 CTGCTCAACTGCTCGGGA 59.341 61.111 0.00 0.00 0.00 5.14
1727 1769 2.614481 GGACTTGCATCGTGGAGGTAAA 60.614 50.000 0.00 0.00 26.20 2.01
1729 1771 1.737793 CTTGCATCGTGGAGGTAAACC 59.262 52.381 0.00 0.00 0.00 3.27
1732 1774 1.467342 GCATCGTGGAGGTAAACCAAC 59.533 52.381 1.26 0.00 39.22 3.77
1744 1786 6.769341 GGAGGTAAACCAACTTTCAGAGTTAA 59.231 38.462 1.26 0.00 46.75 2.01
1748 1790 8.410912 GGTAAACCAACTTTCAGAGTTAATGTT 58.589 33.333 0.00 0.00 46.75 2.71
1753 1795 7.973944 ACCAACTTTCAGAGTTAATGTTGAAAC 59.026 33.333 13.15 0.00 46.75 2.78
1817 1861 5.824904 ACAATCCTTGCTATTAACTGCAG 57.175 39.130 13.48 13.48 40.46 4.41
1951 1999 1.371183 GTGTGTGCACAGCTCCCTA 59.629 57.895 22.40 0.00 44.64 3.53
1952 2000 0.671781 GTGTGTGCACAGCTCCCTAG 60.672 60.000 22.40 0.00 44.64 3.02
1997 2050 9.635404 TCCACTAAATACCCAATTATGGTAAAG 57.365 33.333 9.43 9.59 46.01 1.85
2008 2061 8.748412 CCCAATTATGGTAAAGAGAAACAATGA 58.252 33.333 0.00 0.00 46.01 2.57
2042 2096 7.639945 GTGTAACTTTGTGCTAAACTCTGAAT 58.360 34.615 0.00 0.00 0.00 2.57
2121 2179 3.200825 CCCAGATTCAACAGGACAGGTAT 59.799 47.826 0.00 0.00 0.00 2.73
2122 2180 4.446371 CCAGATTCAACAGGACAGGTATC 58.554 47.826 0.00 0.00 0.00 2.24
2123 2181 4.115516 CAGATTCAACAGGACAGGTATCG 58.884 47.826 0.00 0.00 0.00 2.92
2125 2183 1.262417 TCAACAGGACAGGTATCGCA 58.738 50.000 0.00 0.00 0.00 5.10
2126 2184 1.621317 TCAACAGGACAGGTATCGCAA 59.379 47.619 0.00 0.00 0.00 4.85
2129 2187 4.081365 TCAACAGGACAGGTATCGCAAATA 60.081 41.667 0.00 0.00 0.00 1.40
2131 2189 3.181465 ACAGGACAGGTATCGCAAATAGG 60.181 47.826 0.00 0.00 0.00 2.57
2132 2190 2.143925 GGACAGGTATCGCAAATAGGC 58.856 52.381 0.00 0.00 0.00 3.93
2133 2191 2.143925 GACAGGTATCGCAAATAGGCC 58.856 52.381 0.00 0.00 0.00 5.19
2147 2219 5.337169 GCAAATAGGCCCACATTCTGTTTTA 60.337 40.000 0.00 0.00 0.00 1.52
2150 2222 4.046286 AGGCCCACATTCTGTTTTATGA 57.954 40.909 0.00 0.00 0.00 2.15
2160 2232 8.918658 CACATTCTGTTTTATGAACATTCCAAG 58.081 33.333 0.00 0.00 0.00 3.61
2161 2233 8.641541 ACATTCTGTTTTATGAACATTCCAAGT 58.358 29.630 0.00 0.00 0.00 3.16
2172 2244 6.923012 TGAACATTCCAAGTAAACATCATGG 58.077 36.000 0.00 0.00 0.00 3.66
2173 2245 6.718912 TGAACATTCCAAGTAAACATCATGGA 59.281 34.615 0.00 0.00 38.36 3.41
2179 2325 6.303054 TCCAAGTAAACATCATGGACTTGAA 58.697 36.000 21.95 7.31 46.39 2.69
2189 2335 8.812513 ACATCATGGACTTGAATGATTCTTTA 57.187 30.769 6.73 0.00 40.68 1.85
2190 2336 8.680903 ACATCATGGACTTGAATGATTCTTTAC 58.319 33.333 6.73 0.00 40.68 2.01
2195 2341 7.453393 TGGACTTGAATGATTCTTTACTCTGT 58.547 34.615 6.73 0.00 0.00 3.41
2197 2343 7.389053 GGACTTGAATGATTCTTTACTCTGTGT 59.611 37.037 6.73 0.00 0.00 3.72
2211 2357 7.712204 TTACTCTGTGTAGATGGTCATACAA 57.288 36.000 0.00 0.00 33.89 2.41
2244 2390 1.418637 TGGAAGGTACACAAGTGGGAC 59.581 52.381 5.08 2.46 34.19 4.46
2255 2401 0.179018 AAGTGGGACAAGTGACTGGC 60.179 55.000 0.00 0.00 44.16 4.85
2292 2445 6.268387 TGATGATTATGCAGTAGACCTCATGA 59.732 38.462 0.00 0.00 0.00 3.07
2293 2446 6.094193 TGATTATGCAGTAGACCTCATGAG 57.906 41.667 16.24 16.24 0.00 2.90
2294 2447 5.600069 TGATTATGCAGTAGACCTCATGAGT 59.400 40.000 21.11 9.51 0.00 3.41
2295 2448 5.521906 TTATGCAGTAGACCTCATGAGTC 57.478 43.478 21.11 17.05 0.00 3.36
2296 2449 2.807676 TGCAGTAGACCTCATGAGTCA 58.192 47.619 21.11 0.00 0.00 3.41
2297 2450 3.369175 TGCAGTAGACCTCATGAGTCAT 58.631 45.455 21.11 0.00 0.00 3.06
2298 2451 3.131755 TGCAGTAGACCTCATGAGTCATG 59.868 47.826 24.60 24.60 42.60 3.07
2309 2462 2.030027 TGAGTCATGACCCTGGAAGT 57.970 50.000 22.21 0.54 0.00 3.01
2314 2467 5.724370 TGAGTCATGACCCTGGAAGTATTAA 59.276 40.000 22.21 0.00 0.00 1.40
2315 2468 6.127054 TGAGTCATGACCCTGGAAGTATTAAG 60.127 42.308 22.21 0.00 0.00 1.85
2316 2469 5.131142 AGTCATGACCCTGGAAGTATTAAGG 59.869 44.000 22.21 0.00 33.05 2.69
2374 2527 1.534595 GCTGTCTGCTTGAAACCTCAG 59.465 52.381 0.00 0.00 38.95 3.35
2422 2575 1.003839 GACATGTGAAGGCGTCCCA 60.004 57.895 1.15 0.00 0.00 4.37
2437 2590 3.707793 CGTCCCATAGAACTAGAAGCAC 58.292 50.000 0.00 0.00 0.00 4.40
2459 2612 4.451652 GCACTTCCTTGCGCTCGC 62.452 66.667 9.73 7.38 42.35 5.03
2470 2627 2.256247 GCGCTCGCAAACAAATACG 58.744 52.632 9.59 0.00 41.49 3.06
2471 2628 0.452122 GCGCTCGCAAACAAATACGT 60.452 50.000 9.59 0.00 41.49 3.57
2472 2629 1.201834 GCGCTCGCAAACAAATACGTA 60.202 47.619 9.59 0.00 41.49 3.57
2475 2632 3.404564 GCTCGCAAACAAATACGTAGTG 58.595 45.455 0.08 4.46 45.73 2.74
2512 2671 7.408756 AAGTGCTCCAATGCTCAAATATAAA 57.591 32.000 0.00 0.00 0.00 1.40
2513 2672 7.408756 AGTGCTCCAATGCTCAAATATAAAA 57.591 32.000 0.00 0.00 0.00 1.52
2584 2743 3.461773 ATCACCTCGGCACCCTCG 61.462 66.667 0.00 0.00 0.00 4.63
2644 2803 4.914504 CACTACACACATATCTCATCGAGC 59.085 45.833 0.00 0.00 0.00 5.03
2681 2840 5.863935 GCACAATTTTCACAACTATTCCCTC 59.136 40.000 0.00 0.00 0.00 4.30
2705 2864 3.570926 TTCACAACTATCTCGCGACTT 57.429 42.857 3.71 0.00 0.00 3.01
2765 3092 1.202604 TGGAGGTTGTTCTGGACGTTC 60.203 52.381 0.00 0.00 0.00 3.95
2779 3106 3.058293 TGGACGTTCTCAAACATGATTGC 60.058 43.478 10.65 0.00 34.93 3.56
2814 3141 9.864034 ATTGAGTAATACAAGAATTATTTCGCG 57.136 29.630 0.00 0.00 36.93 5.87
2910 3239 2.755103 GGGTAGCCCAATCTTCACAAAG 59.245 50.000 0.00 0.00 44.65 2.77
2924 3253 2.290367 TCACAAAGTGAAGGTGCATTCG 59.710 45.455 0.00 0.00 39.78 3.34
2934 3263 0.652592 GGTGCATTCGAGGATGAACG 59.347 55.000 1.20 0.00 36.58 3.95
2935 3264 0.026803 GTGCATTCGAGGATGAACGC 59.973 55.000 1.20 0.00 37.55 4.84
2963 3292 1.202557 TCGTAAGGGAAACACAAGCGT 60.203 47.619 0.00 0.00 38.47 5.07
3004 3333 5.824904 ATGCACAACCAAATCTCTCATAC 57.175 39.130 0.00 0.00 0.00 2.39
3036 3365 7.492994 GTCAATACAAGAGGAACAGTTAGATCC 59.507 40.741 0.00 0.00 39.38 3.36
3059 3388 7.488322 TCCAACAACAAACAAGAGAAATAAGG 58.512 34.615 0.00 0.00 0.00 2.69
3060 3389 7.340743 TCCAACAACAAACAAGAGAAATAAGGA 59.659 33.333 0.00 0.00 0.00 3.36
3061 3390 7.649306 CCAACAACAAACAAGAGAAATAAGGAG 59.351 37.037 0.00 0.00 0.00 3.69
3062 3391 6.739112 ACAACAAACAAGAGAAATAAGGAGC 58.261 36.000 0.00 0.00 0.00 4.70
3063 3392 6.547510 ACAACAAACAAGAGAAATAAGGAGCT 59.452 34.615 0.00 0.00 0.00 4.09
3064 3393 6.566197 ACAAACAAGAGAAATAAGGAGCTG 57.434 37.500 0.00 0.00 0.00 4.24
3142 3582 4.376146 AGAGGAGATAAATCGAGCAAAGC 58.624 43.478 0.00 0.00 0.00 3.51
3165 3605 7.680730 AGCTCTCTCAGGATTTAGTTTAAACA 58.319 34.615 20.06 3.98 0.00 2.83
3245 3685 3.035055 TGTACATGGGGAACGATAGGA 57.965 47.619 0.00 0.00 43.77 2.94
3318 3765 1.546589 TAGACATGGGGCCGAACGTT 61.547 55.000 0.00 0.00 0.00 3.99
3324 3771 1.078988 GGGGCCGAACGTTATGTCA 60.079 57.895 0.00 0.00 0.00 3.58
3340 3787 1.269723 TGTCAGACTGTCCGATGTGTC 59.730 52.381 3.76 0.00 0.00 3.67
3357 3804 2.096417 GTGTCGAACTGCACATTGGTAC 60.096 50.000 0.00 0.00 35.81 3.34
3364 3816 3.754965 ACTGCACATTGGTACTGATGTT 58.245 40.909 10.58 0.00 34.63 2.71
3499 3952 4.955925 TGTTCGTTGCTTCTTCTTTGAA 57.044 36.364 0.00 0.00 0.00 2.69
3522 3975 2.930682 CCCTTCTTCTACTTGCTTACGC 59.069 50.000 0.00 0.00 0.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.812972 TGGTCAACAGTTTCTCTATACATACTT 58.187 33.333 0.00 0.00 0.00 2.24
55 56 8.362464 TGGTCAACAGTTTCTCTATACATACT 57.638 34.615 0.00 0.00 0.00 2.12
56 57 9.601217 AATGGTCAACAGTTTCTCTATACATAC 57.399 33.333 0.00 0.00 0.00 2.39
62 63 9.739276 TTCATAAATGGTCAACAGTTTCTCTAT 57.261 29.630 0.00 0.00 38.50 1.98
63 64 9.567776 TTTCATAAATGGTCAACAGTTTCTCTA 57.432 29.630 0.00 0.00 38.50 2.43
64 65 8.463930 TTTCATAAATGGTCAACAGTTTCTCT 57.536 30.769 0.00 0.00 38.50 3.10
65 66 9.528018 TTTTTCATAAATGGTCAACAGTTTCTC 57.472 29.630 0.00 0.00 38.50 2.87
93 94 9.471084 CCTTTTTCCAATACGAGTTTAACATTT 57.529 29.630 0.00 0.00 0.00 2.32
94 95 8.852135 TCCTTTTTCCAATACGAGTTTAACATT 58.148 29.630 0.00 0.00 0.00 2.71
95 96 8.398878 TCCTTTTTCCAATACGAGTTTAACAT 57.601 30.769 0.00 0.00 0.00 2.71
96 97 7.804843 TCCTTTTTCCAATACGAGTTTAACA 57.195 32.000 0.00 0.00 0.00 2.41
97 98 9.518906 TTTTCCTTTTTCCAATACGAGTTTAAC 57.481 29.630 0.00 0.00 0.00 2.01
99 100 9.738832 CTTTTTCCTTTTTCCAATACGAGTTTA 57.261 29.630 0.00 0.00 0.00 2.01
100 101 8.471609 TCTTTTTCCTTTTTCCAATACGAGTTT 58.528 29.630 0.00 0.00 0.00 2.66
101 102 8.002984 TCTTTTTCCTTTTTCCAATACGAGTT 57.997 30.769 0.00 0.00 0.00 3.01
102 103 7.576861 TCTTTTTCCTTTTTCCAATACGAGT 57.423 32.000 0.00 0.00 0.00 4.18
103 104 8.752254 GTTTCTTTTTCCTTTTTCCAATACGAG 58.248 33.333 0.00 0.00 0.00 4.18
104 105 7.707464 GGTTTCTTTTTCCTTTTTCCAATACGA 59.293 33.333 0.00 0.00 0.00 3.43
105 106 7.492994 TGGTTTCTTTTTCCTTTTTCCAATACG 59.507 33.333 0.00 0.00 0.00 3.06
106 107 8.725405 TGGTTTCTTTTTCCTTTTTCCAATAC 57.275 30.769 0.00 0.00 0.00 1.89
107 108 9.740710 TTTGGTTTCTTTTTCCTTTTTCCAATA 57.259 25.926 0.00 0.00 32.55 1.90
108 109 8.642935 TTTGGTTTCTTTTTCCTTTTTCCAAT 57.357 26.923 0.00 0.00 32.55 3.16
109 110 7.939588 TCTTTGGTTTCTTTTTCCTTTTTCCAA 59.060 29.630 0.00 0.00 0.00 3.53
110 111 7.454225 TCTTTGGTTTCTTTTTCCTTTTTCCA 58.546 30.769 0.00 0.00 0.00 3.53
111 112 7.915293 TCTTTGGTTTCTTTTTCCTTTTTCC 57.085 32.000 0.00 0.00 0.00 3.13
159 160 9.859152 TTCCTTTCATGGTTTTTATCCATTTTT 57.141 25.926 0.00 0.00 42.92 1.94
160 161 9.283768 GTTCCTTTCATGGTTTTTATCCATTTT 57.716 29.630 0.00 0.00 42.92 1.82
161 162 8.435982 TGTTCCTTTCATGGTTTTTATCCATTT 58.564 29.630 0.00 0.00 42.92 2.32
162 163 7.972301 TGTTCCTTTCATGGTTTTTATCCATT 58.028 30.769 0.00 0.00 42.92 3.16
163 164 7.552050 TGTTCCTTTCATGGTTTTTATCCAT 57.448 32.000 0.00 0.00 45.29 3.41
164 165 6.985653 TGTTCCTTTCATGGTTTTTATCCA 57.014 33.333 0.00 0.00 39.41 3.41
165 166 8.669946 TTTTGTTCCTTTCATGGTTTTTATCC 57.330 30.769 0.00 0.00 0.00 2.59
167 168 9.898152 TCTTTTTGTTCCTTTCATGGTTTTTAT 57.102 25.926 0.00 0.00 0.00 1.40
168 169 9.726438 TTCTTTTTGTTCCTTTCATGGTTTTTA 57.274 25.926 0.00 0.00 0.00 1.52
169 170 8.628630 TTCTTTTTGTTCCTTTCATGGTTTTT 57.371 26.923 0.00 0.00 0.00 1.94
170 171 8.511321 GTTTCTTTTTGTTCCTTTCATGGTTTT 58.489 29.630 0.00 0.00 0.00 2.43
171 172 7.120579 GGTTTCTTTTTGTTCCTTTCATGGTTT 59.879 33.333 0.00 0.00 0.00 3.27
172 173 6.597672 GGTTTCTTTTTGTTCCTTTCATGGTT 59.402 34.615 0.00 0.00 0.00 3.67
173 174 6.112734 GGTTTCTTTTTGTTCCTTTCATGGT 58.887 36.000 0.00 0.00 0.00 3.55
174 175 6.112058 TGGTTTCTTTTTGTTCCTTTCATGG 58.888 36.000 0.00 0.00 0.00 3.66
175 176 7.608308 TTGGTTTCTTTTTGTTCCTTTCATG 57.392 32.000 0.00 0.00 0.00 3.07
176 177 8.628630 TTTTGGTTTCTTTTTGTTCCTTTCAT 57.371 26.923 0.00 0.00 0.00 2.57
177 178 7.174080 CCTTTTGGTTTCTTTTTGTTCCTTTCA 59.826 33.333 0.00 0.00 34.07 2.69
178 179 7.389330 TCCTTTTGGTTTCTTTTTGTTCCTTTC 59.611 33.333 0.00 0.00 41.38 2.62
179 180 7.227873 TCCTTTTGGTTTCTTTTTGTTCCTTT 58.772 30.769 0.00 0.00 41.38 3.11
180 181 6.774673 TCCTTTTGGTTTCTTTTTGTTCCTT 58.225 32.000 0.00 0.00 41.38 3.36
181 182 6.367374 TCCTTTTGGTTTCTTTTTGTTCCT 57.633 33.333 0.00 0.00 41.38 3.36
182 183 5.584649 CCTCCTTTTGGTTTCTTTTTGTTCC 59.415 40.000 0.00 0.00 41.38 3.62
183 184 6.312918 GTCCTCCTTTTGGTTTCTTTTTGTTC 59.687 38.462 0.00 0.00 41.38 3.18
184 185 6.170506 GTCCTCCTTTTGGTTTCTTTTTGTT 58.829 36.000 0.00 0.00 41.38 2.83
185 186 5.623596 CGTCCTCCTTTTGGTTTCTTTTTGT 60.624 40.000 0.00 0.00 41.38 2.83
186 187 4.803613 CGTCCTCCTTTTGGTTTCTTTTTG 59.196 41.667 0.00 0.00 41.38 2.44
187 188 4.707934 TCGTCCTCCTTTTGGTTTCTTTTT 59.292 37.500 0.00 0.00 41.38 1.94
188 189 4.274978 TCGTCCTCCTTTTGGTTTCTTTT 58.725 39.130 0.00 0.00 41.38 2.27
189 190 3.893521 TCGTCCTCCTTTTGGTTTCTTT 58.106 40.909 0.00 0.00 41.38 2.52
190 191 3.570912 TCGTCCTCCTTTTGGTTTCTT 57.429 42.857 0.00 0.00 41.38 2.52
191 192 3.570912 TTCGTCCTCCTTTTGGTTTCT 57.429 42.857 0.00 0.00 41.38 2.52
192 193 3.881089 TCTTTCGTCCTCCTTTTGGTTTC 59.119 43.478 0.00 0.00 41.38 2.78
193 194 3.893521 TCTTTCGTCCTCCTTTTGGTTT 58.106 40.909 0.00 0.00 41.38 3.27
194 195 3.570912 TCTTTCGTCCTCCTTTTGGTT 57.429 42.857 0.00 0.00 41.38 3.67
195 196 3.135895 TCTTCTTTCGTCCTCCTTTTGGT 59.864 43.478 0.00 0.00 41.38 3.67
196 197 3.740115 TCTTCTTTCGTCCTCCTTTTGG 58.260 45.455 0.00 0.00 42.21 3.28
197 198 4.449405 GTCTCTTCTTTCGTCCTCCTTTTG 59.551 45.833 0.00 0.00 0.00 2.44
198 199 4.101119 TGTCTCTTCTTTCGTCCTCCTTTT 59.899 41.667 0.00 0.00 0.00 2.27
199 200 3.641906 TGTCTCTTCTTTCGTCCTCCTTT 59.358 43.478 0.00 0.00 0.00 3.11
200 201 3.231818 TGTCTCTTCTTTCGTCCTCCTT 58.768 45.455 0.00 0.00 0.00 3.36
201 202 2.877866 TGTCTCTTCTTTCGTCCTCCT 58.122 47.619 0.00 0.00 0.00 3.69
202 203 3.662247 TTGTCTCTTCTTTCGTCCTCC 57.338 47.619 0.00 0.00 0.00 4.30
203 204 5.753921 TCTTTTTGTCTCTTCTTTCGTCCTC 59.246 40.000 0.00 0.00 0.00 3.71
204 205 5.671493 TCTTTTTGTCTCTTCTTTCGTCCT 58.329 37.500 0.00 0.00 0.00 3.85
205 206 5.986004 TCTTTTTGTCTCTTCTTTCGTCC 57.014 39.130 0.00 0.00 0.00 4.79
206 207 6.949449 ACATCTTTTTGTCTCTTCTTTCGTC 58.051 36.000 0.00 0.00 0.00 4.20
207 208 6.927294 ACATCTTTTTGTCTCTTCTTTCGT 57.073 33.333 0.00 0.00 0.00 3.85
239 240 7.340743 CCCCTGGTTTTCTTTGGTTTTATTTTT 59.659 33.333 0.00 0.00 0.00 1.94
240 241 6.831353 CCCCTGGTTTTCTTTGGTTTTATTTT 59.169 34.615 0.00 0.00 0.00 1.82
241 242 6.158871 TCCCCTGGTTTTCTTTGGTTTTATTT 59.841 34.615 0.00 0.00 0.00 1.40
242 243 5.668080 TCCCCTGGTTTTCTTTGGTTTTATT 59.332 36.000 0.00 0.00 0.00 1.40
243 244 5.220521 TCCCCTGGTTTTCTTTGGTTTTAT 58.779 37.500 0.00 0.00 0.00 1.40
244 245 4.621769 TCCCCTGGTTTTCTTTGGTTTTA 58.378 39.130 0.00 0.00 0.00 1.52
245 246 3.455849 TCCCCTGGTTTTCTTTGGTTTT 58.544 40.909 0.00 0.00 0.00 2.43
246 247 3.123392 TCCCCTGGTTTTCTTTGGTTT 57.877 42.857 0.00 0.00 0.00 3.27
247 248 2.858787 TCCCCTGGTTTTCTTTGGTT 57.141 45.000 0.00 0.00 0.00 3.67
248 249 2.858787 TTCCCCTGGTTTTCTTTGGT 57.141 45.000 0.00 0.00 0.00 3.67
249 250 4.495690 TTTTTCCCCTGGTTTTCTTTGG 57.504 40.909 0.00 0.00 0.00 3.28
250 251 5.063204 GGATTTTTCCCCTGGTTTTCTTTG 58.937 41.667 0.00 0.00 0.00 2.77
251 252 4.104102 GGGATTTTTCCCCTGGTTTTCTTT 59.896 41.667 0.00 0.00 44.18 2.52
252 253 3.650942 GGGATTTTTCCCCTGGTTTTCTT 59.349 43.478 0.00 0.00 44.18 2.52
253 254 3.248024 GGGATTTTTCCCCTGGTTTTCT 58.752 45.455 0.00 0.00 44.18 2.52
254 255 3.695830 GGGATTTTTCCCCTGGTTTTC 57.304 47.619 0.00 0.00 44.18 2.29
264 265 4.777463 TCGGTTATCTCAGGGATTTTTCC 58.223 43.478 0.00 0.00 35.98 3.13
265 266 6.944234 ATTCGGTTATCTCAGGGATTTTTC 57.056 37.500 0.00 0.00 35.98 2.29
266 267 7.802117 TCTATTCGGTTATCTCAGGGATTTTT 58.198 34.615 0.00 0.00 35.98 1.94
267 268 7.374975 TCTATTCGGTTATCTCAGGGATTTT 57.625 36.000 0.00 0.00 35.98 1.82
268 269 6.996180 TCTATTCGGTTATCTCAGGGATTT 57.004 37.500 0.00 0.00 35.98 2.17
269 270 6.326583 TGTTCTATTCGGTTATCTCAGGGATT 59.673 38.462 0.00 0.00 35.98 3.01
270 271 5.839063 TGTTCTATTCGGTTATCTCAGGGAT 59.161 40.000 0.00 0.00 38.38 3.85
271 272 5.205821 TGTTCTATTCGGTTATCTCAGGGA 58.794 41.667 0.00 0.00 0.00 4.20
272 273 5.531122 TGTTCTATTCGGTTATCTCAGGG 57.469 43.478 0.00 0.00 0.00 4.45
638 639 2.035832 CGGTTTTCACTGGGCATTTTCT 59.964 45.455 0.00 0.00 0.00 2.52
639 640 2.035321 TCGGTTTTCACTGGGCATTTTC 59.965 45.455 0.00 0.00 0.00 2.29
640 641 2.035632 TCGGTTTTCACTGGGCATTTT 58.964 42.857 0.00 0.00 0.00 1.82
641 642 1.613437 CTCGGTTTTCACTGGGCATTT 59.387 47.619 0.00 0.00 0.00 2.32
642 643 1.202879 TCTCGGTTTTCACTGGGCATT 60.203 47.619 0.00 0.00 28.28 3.56
643 644 0.400213 TCTCGGTTTTCACTGGGCAT 59.600 50.000 0.00 0.00 28.28 4.40
644 645 0.181587 TTCTCGGTTTTCACTGGGCA 59.818 50.000 0.00 0.00 28.28 5.36
645 646 1.266989 CTTTCTCGGTTTTCACTGGGC 59.733 52.381 0.00 0.00 28.28 5.36
646 647 2.846193 TCTTTCTCGGTTTTCACTGGG 58.154 47.619 0.00 0.00 0.00 4.45
647 648 4.893424 TTTCTTTCTCGGTTTTCACTGG 57.107 40.909 0.00 0.00 0.00 4.00
696 697 9.421399 TCTTGGTTTCTTAGATTCTTTTCCTTT 57.579 29.630 0.00 0.00 0.00 3.11
697 698 8.996651 TCTTGGTTTCTTAGATTCTTTTCCTT 57.003 30.769 0.00 0.00 0.00 3.36
698 699 8.996651 TTCTTGGTTTCTTAGATTCTTTTCCT 57.003 30.769 0.00 0.00 0.00 3.36
701 702 9.817809 GGTTTTCTTGGTTTCTTAGATTCTTTT 57.182 29.630 0.00 0.00 0.00 2.27
702 703 8.977412 TGGTTTTCTTGGTTTCTTAGATTCTTT 58.023 29.630 0.00 0.00 0.00 2.52
703 704 8.533569 TGGTTTTCTTGGTTTCTTAGATTCTT 57.466 30.769 0.00 0.00 0.00 2.52
704 705 7.231519 CCTGGTTTTCTTGGTTTCTTAGATTCT 59.768 37.037 0.00 0.00 0.00 2.40
705 706 7.014326 ACCTGGTTTTCTTGGTTTCTTAGATTC 59.986 37.037 0.00 0.00 0.00 2.52
706 707 6.839134 ACCTGGTTTTCTTGGTTTCTTAGATT 59.161 34.615 0.00 0.00 0.00 2.40
707 708 6.373759 ACCTGGTTTTCTTGGTTTCTTAGAT 58.626 36.000 0.00 0.00 0.00 1.98
708 709 5.762279 ACCTGGTTTTCTTGGTTTCTTAGA 58.238 37.500 0.00 0.00 0.00 2.10
709 710 6.996282 TCTACCTGGTTTTCTTGGTTTCTTAG 59.004 38.462 3.84 0.00 34.33 2.18
710 711 6.902408 TCTACCTGGTTTTCTTGGTTTCTTA 58.098 36.000 3.84 0.00 34.33 2.10
711 712 5.762279 TCTACCTGGTTTTCTTGGTTTCTT 58.238 37.500 3.84 0.00 34.33 2.52
712 713 5.382664 TCTACCTGGTTTTCTTGGTTTCT 57.617 39.130 3.84 0.00 34.33 2.52
713 714 6.270815 GTTTCTACCTGGTTTTCTTGGTTTC 58.729 40.000 3.84 0.00 34.33 2.78
714 715 5.128171 GGTTTCTACCTGGTTTTCTTGGTTT 59.872 40.000 3.84 0.00 41.53 3.27
715 716 4.647853 GGTTTCTACCTGGTTTTCTTGGTT 59.352 41.667 3.84 0.00 41.53 3.67
716 717 4.212716 GGTTTCTACCTGGTTTTCTTGGT 58.787 43.478 3.84 0.00 41.53 3.67
717 718 4.211920 TGGTTTCTACCTGGTTTTCTTGG 58.788 43.478 3.84 0.00 45.27 3.61
718 719 6.940298 TCTATGGTTTCTACCTGGTTTTCTTG 59.060 38.462 3.84 0.00 45.27 3.02
719 720 7.086685 TCTATGGTTTCTACCTGGTTTTCTT 57.913 36.000 3.84 0.00 45.27 2.52
720 721 6.697641 TCTATGGTTTCTACCTGGTTTTCT 57.302 37.500 3.84 0.00 45.27 2.52
721 722 7.229907 TGTTTCTATGGTTTCTACCTGGTTTTC 59.770 37.037 3.84 0.00 45.27 2.29
722 723 7.064229 TGTTTCTATGGTTTCTACCTGGTTTT 58.936 34.615 3.84 0.00 45.27 2.43
723 724 6.607019 TGTTTCTATGGTTTCTACCTGGTTT 58.393 36.000 3.84 0.00 45.27 3.27
724 725 6.195600 TGTTTCTATGGTTTCTACCTGGTT 57.804 37.500 3.84 0.00 45.27 3.67
725 726 5.836024 TGTTTCTATGGTTTCTACCTGGT 57.164 39.130 4.05 4.05 45.27 4.00
726 727 7.230712 ACTTTTGTTTCTATGGTTTCTACCTGG 59.769 37.037 0.00 0.00 45.27 4.45
727 728 8.166422 ACTTTTGTTTCTATGGTTTCTACCTG 57.834 34.615 0.00 0.00 45.27 4.00
728 729 8.762481 AACTTTTGTTTCTATGGTTTCTACCT 57.238 30.769 0.00 0.00 41.64 3.08
744 745 6.262273 TCTCTCGGCTTTCATAAACTTTTGTT 59.738 34.615 0.00 0.00 45.94 2.83
745 746 5.763204 TCTCTCGGCTTTCATAAACTTTTGT 59.237 36.000 0.00 0.00 0.00 2.83
746 747 6.147821 TCTCTCTCGGCTTTCATAAACTTTTG 59.852 38.462 0.00 0.00 0.00 2.44
747 748 6.231211 TCTCTCTCGGCTTTCATAAACTTTT 58.769 36.000 0.00 0.00 0.00 2.27
748 749 5.794894 TCTCTCTCGGCTTTCATAAACTTT 58.205 37.500 0.00 0.00 0.00 2.66
749 750 5.407407 TCTCTCTCGGCTTTCATAAACTT 57.593 39.130 0.00 0.00 0.00 2.66
750 751 5.407407 TTCTCTCTCGGCTTTCATAAACT 57.593 39.130 0.00 0.00 0.00 2.66
751 752 5.639931 AGTTTCTCTCTCGGCTTTCATAAAC 59.360 40.000 0.00 0.00 0.00 2.01
752 753 5.794894 AGTTTCTCTCTCGGCTTTCATAAA 58.205 37.500 0.00 0.00 0.00 1.40
753 754 5.407407 AGTTTCTCTCTCGGCTTTCATAA 57.593 39.130 0.00 0.00 0.00 1.90
754 755 6.377429 TCTTAGTTTCTCTCTCGGCTTTCATA 59.623 38.462 0.00 0.00 0.00 2.15
755 756 3.971245 AGTTTCTCTCTCGGCTTTCAT 57.029 42.857 0.00 0.00 0.00 2.57
756 757 4.523173 TCTTAGTTTCTCTCTCGGCTTTCA 59.477 41.667 0.00 0.00 0.00 2.69
757 758 5.061920 TCTTAGTTTCTCTCTCGGCTTTC 57.938 43.478 0.00 0.00 0.00 2.62
758 759 5.470047 TTCTTAGTTTCTCTCTCGGCTTT 57.530 39.130 0.00 0.00 0.00 3.51
759 760 5.470047 TTTCTTAGTTTCTCTCTCGGCTT 57.530 39.130 0.00 0.00 0.00 4.35
760 761 5.231702 GTTTTCTTAGTTTCTCTCTCGGCT 58.768 41.667 0.00 0.00 0.00 5.52
761 762 4.389382 GGTTTTCTTAGTTTCTCTCTCGGC 59.611 45.833 0.00 0.00 0.00 5.54
762 763 4.621886 CGGTTTTCTTAGTTTCTCTCTCGG 59.378 45.833 0.00 0.00 0.00 4.63
763 764 4.621886 CCGGTTTTCTTAGTTTCTCTCTCG 59.378 45.833 0.00 0.00 0.00 4.04
764 765 5.405873 CACCGGTTTTCTTAGTTTCTCTCTC 59.594 44.000 2.97 0.00 0.00 3.20
765 766 5.070047 TCACCGGTTTTCTTAGTTTCTCTCT 59.930 40.000 2.97 0.00 0.00 3.10
766 767 5.295152 TCACCGGTTTTCTTAGTTTCTCTC 58.705 41.667 2.97 0.00 0.00 3.20
767 768 5.286267 TCACCGGTTTTCTTAGTTTCTCT 57.714 39.130 2.97 0.00 0.00 3.10
768 769 5.996669 TTCACCGGTTTTCTTAGTTTCTC 57.003 39.130 2.97 0.00 0.00 2.87
769 770 6.762702 TTTTCACCGGTTTTCTTAGTTTCT 57.237 33.333 2.97 0.00 0.00 2.52
770 771 7.008901 CAGTTTTTCACCGGTTTTCTTAGTTTC 59.991 37.037 2.97 0.00 0.00 2.78
771 772 6.809689 CAGTTTTTCACCGGTTTTCTTAGTTT 59.190 34.615 2.97 0.00 0.00 2.66
772 773 6.151480 TCAGTTTTTCACCGGTTTTCTTAGTT 59.849 34.615 2.97 0.00 0.00 2.24
773 774 5.648960 TCAGTTTTTCACCGGTTTTCTTAGT 59.351 36.000 2.97 0.00 0.00 2.24
774 775 6.126568 TCAGTTTTTCACCGGTTTTCTTAG 57.873 37.500 2.97 0.00 0.00 2.18
775 776 6.151480 ACTTCAGTTTTTCACCGGTTTTCTTA 59.849 34.615 2.97 0.00 0.00 2.10
776 777 5.047590 ACTTCAGTTTTTCACCGGTTTTCTT 60.048 36.000 2.97 0.00 0.00 2.52
777 778 4.461431 ACTTCAGTTTTTCACCGGTTTTCT 59.539 37.500 2.97 0.00 0.00 2.52
778 779 4.740268 ACTTCAGTTTTTCACCGGTTTTC 58.260 39.130 2.97 0.00 0.00 2.29
779 780 4.794278 ACTTCAGTTTTTCACCGGTTTT 57.206 36.364 2.97 0.00 0.00 2.43
780 781 4.794278 AACTTCAGTTTTTCACCGGTTT 57.206 36.364 2.97 0.00 33.93 3.27
781 782 7.446013 TGATATAACTTCAGTTTTTCACCGGTT 59.554 33.333 2.97 0.00 39.31 4.44
782 783 6.938030 TGATATAACTTCAGTTTTTCACCGGT 59.062 34.615 0.00 0.00 39.31 5.28
783 784 7.372451 TGATATAACTTCAGTTTTTCACCGG 57.628 36.000 0.00 0.00 39.31 5.28
784 785 9.329913 CTTTGATATAACTTCAGTTTTTCACCG 57.670 33.333 0.00 0.00 39.31 4.94
813 814 3.132160 CGCCGGTTTTATTTGGGTTTTT 58.868 40.909 1.90 0.00 0.00 1.94
814 815 2.364647 TCGCCGGTTTTATTTGGGTTTT 59.635 40.909 1.90 0.00 0.00 2.43
815 816 1.962100 TCGCCGGTTTTATTTGGGTTT 59.038 42.857 1.90 0.00 0.00 3.27
816 817 1.618487 TCGCCGGTTTTATTTGGGTT 58.382 45.000 1.90 0.00 0.00 4.11
817 818 1.270274 GTTCGCCGGTTTTATTTGGGT 59.730 47.619 1.90 0.00 0.00 4.51
818 819 1.269998 TGTTCGCCGGTTTTATTTGGG 59.730 47.619 1.90 0.00 0.00 4.12
819 820 2.708386 TGTTCGCCGGTTTTATTTGG 57.292 45.000 1.90 0.00 0.00 3.28
820 821 6.879188 ATTATTGTTCGCCGGTTTTATTTG 57.121 33.333 1.90 0.00 0.00 2.32
821 822 8.460428 TCTTATTATTGTTCGCCGGTTTTATTT 58.540 29.630 1.90 0.00 0.00 1.40
822 823 7.987649 TCTTATTATTGTTCGCCGGTTTTATT 58.012 30.769 1.90 0.00 0.00 1.40
823 824 7.556733 TCTTATTATTGTTCGCCGGTTTTAT 57.443 32.000 1.90 0.00 0.00 1.40
824 825 6.981762 TCTTATTATTGTTCGCCGGTTTTA 57.018 33.333 1.90 0.00 0.00 1.52
825 826 5.883503 TCTTATTATTGTTCGCCGGTTTT 57.116 34.783 1.90 0.00 0.00 2.43
826 827 5.392272 GGTTCTTATTATTGTTCGCCGGTTT 60.392 40.000 1.90 0.00 0.00 3.27
827 828 4.095334 GGTTCTTATTATTGTTCGCCGGTT 59.905 41.667 1.90 0.00 0.00 4.44
828 829 3.624410 GGTTCTTATTATTGTTCGCCGGT 59.376 43.478 1.90 0.00 0.00 5.28
829 830 3.302870 CGGTTCTTATTATTGTTCGCCGG 60.303 47.826 0.00 0.00 32.85 6.13
830 831 3.552699 TCGGTTCTTATTATTGTTCGCCG 59.447 43.478 0.00 0.00 37.15 6.46
831 832 5.292589 TCTTCGGTTCTTATTATTGTTCGCC 59.707 40.000 0.00 0.00 0.00 5.54
832 833 6.340537 TCTTCGGTTCTTATTATTGTTCGC 57.659 37.500 0.00 0.00 0.00 4.70
833 834 9.601971 TTTTTCTTCGGTTCTTATTATTGTTCG 57.398 29.630 0.00 0.00 0.00 3.95
859 860 9.849166 TCTTTCTATTTCACGTTTTCTTTTGTT 57.151 25.926 0.00 0.00 0.00 2.83
860 861 9.849166 TTCTTTCTATTTCACGTTTTCTTTTGT 57.151 25.926 0.00 0.00 0.00 2.83
864 865 9.849166 TGTTTTCTTTCTATTTCACGTTTTCTT 57.151 25.926 0.00 0.00 0.00 2.52
865 866 9.849166 TTGTTTTCTTTCTATTTCACGTTTTCT 57.151 25.926 0.00 0.00 0.00 2.52
868 869 9.849166 TCTTTGTTTTCTTTCTATTTCACGTTT 57.151 25.926 0.00 0.00 0.00 3.60
869 870 9.849166 TTCTTTGTTTTCTTTCTATTTCACGTT 57.151 25.926 0.00 0.00 0.00 3.99
870 871 9.849166 TTTCTTTGTTTTCTTTCTATTTCACGT 57.151 25.926 0.00 0.00 0.00 4.49
878 879 9.777575 CGGTAGTTTTTCTTTGTTTTCTTTCTA 57.222 29.630 0.00 0.00 0.00 2.10
879 880 8.301720 ACGGTAGTTTTTCTTTGTTTTCTTTCT 58.698 29.630 0.00 0.00 0.00 2.52
880 881 8.456904 ACGGTAGTTTTTCTTTGTTTTCTTTC 57.543 30.769 0.00 0.00 0.00 2.62
881 882 9.911138 TTACGGTAGTTTTTCTTTGTTTTCTTT 57.089 25.926 0.00 0.00 0.00 2.52
885 886 9.955208 CCTATTACGGTAGTTTTTCTTTGTTTT 57.045 29.630 0.00 0.00 0.00 2.43
886 887 8.077991 GCCTATTACGGTAGTTTTTCTTTGTTT 58.922 33.333 0.00 0.00 0.00 2.83
887 888 7.308770 GGCCTATTACGGTAGTTTTTCTTTGTT 60.309 37.037 0.00 0.00 0.00 2.83
888 889 6.149973 GGCCTATTACGGTAGTTTTTCTTTGT 59.850 38.462 0.00 0.00 0.00 2.83
889 890 6.549061 GGCCTATTACGGTAGTTTTTCTTTG 58.451 40.000 0.00 0.00 0.00 2.77
890 891 5.352293 CGGCCTATTACGGTAGTTTTTCTTT 59.648 40.000 0.00 0.00 0.00 2.52
891 892 4.872124 CGGCCTATTACGGTAGTTTTTCTT 59.128 41.667 0.00 0.00 0.00 2.52
892 893 4.436332 CGGCCTATTACGGTAGTTTTTCT 58.564 43.478 0.00 0.00 0.00 2.52
893 894 3.557185 CCGGCCTATTACGGTAGTTTTTC 59.443 47.826 0.00 0.00 44.85 2.29
894 895 3.534554 CCGGCCTATTACGGTAGTTTTT 58.465 45.455 0.00 0.00 44.85 1.94
895 896 3.183793 CCGGCCTATTACGGTAGTTTT 57.816 47.619 0.00 0.00 44.85 2.43
896 897 2.896745 CCGGCCTATTACGGTAGTTT 57.103 50.000 0.00 0.00 44.85 2.66
903 904 0.539986 ATATGGGCCGGCCTATTACG 59.460 55.000 44.18 0.00 38.31 3.18
904 905 1.280998 ACATATGGGCCGGCCTATTAC 59.719 52.381 44.18 28.35 38.31 1.89
905 906 1.663911 ACATATGGGCCGGCCTATTA 58.336 50.000 44.18 30.89 38.31 0.98
906 907 0.777446 AACATATGGGCCGGCCTATT 59.223 50.000 44.18 29.34 38.31 1.73
907 908 0.328258 GAACATATGGGCCGGCCTAT 59.672 55.000 41.43 41.43 40.50 2.57
908 909 1.057275 TGAACATATGGGCCGGCCTA 61.057 55.000 42.70 39.29 36.10 3.93
909 910 2.343475 CTGAACATATGGGCCGGCCT 62.343 60.000 42.70 28.20 36.10 5.19
910 911 1.898574 CTGAACATATGGGCCGGCC 60.899 63.158 38.57 38.57 0.00 6.13
911 912 2.555547 GCTGAACATATGGGCCGGC 61.556 63.158 21.18 21.18 0.00 6.13
912 913 1.898574 GGCTGAACATATGGGCCGG 60.899 63.158 7.80 0.00 33.30 6.13
913 914 1.898574 GGGCTGAACATATGGGCCG 60.899 63.158 18.16 5.20 43.27 6.13
914 915 0.178953 ATGGGCTGAACATATGGGCC 60.179 55.000 17.21 17.21 43.45 5.80
915 916 1.615392 GAATGGGCTGAACATATGGGC 59.385 52.381 7.80 5.77 0.00 5.36
916 917 2.889045 CTGAATGGGCTGAACATATGGG 59.111 50.000 7.80 0.00 0.00 4.00
917 918 2.295349 GCTGAATGGGCTGAACATATGG 59.705 50.000 7.80 0.00 0.00 2.74
918 919 2.031420 CGCTGAATGGGCTGAACATATG 60.031 50.000 0.00 0.00 0.00 1.78
919 920 2.158769 TCGCTGAATGGGCTGAACATAT 60.159 45.455 0.00 0.00 0.00 1.78
920 921 1.209261 TCGCTGAATGGGCTGAACATA 59.791 47.619 0.00 0.00 0.00 2.29
921 922 0.035152 TCGCTGAATGGGCTGAACAT 60.035 50.000 0.00 0.00 0.00 2.71
922 923 0.674581 CTCGCTGAATGGGCTGAACA 60.675 55.000 0.00 0.00 0.00 3.18
923 924 0.391661 TCTCGCTGAATGGGCTGAAC 60.392 55.000 0.00 0.00 0.00 3.18
924 925 0.543277 ATCTCGCTGAATGGGCTGAA 59.457 50.000 0.00 0.00 0.00 3.02
925 926 1.413118 TATCTCGCTGAATGGGCTGA 58.587 50.000 0.00 0.00 0.00 4.26
926 927 2.344950 GATATCTCGCTGAATGGGCTG 58.655 52.381 0.00 0.00 0.00 4.85
927 928 1.067283 CGATATCTCGCTGAATGGGCT 60.067 52.381 0.34 0.00 38.20 5.19
928 929 1.354040 CGATATCTCGCTGAATGGGC 58.646 55.000 0.34 0.00 38.20 5.36
957 958 3.810896 GTTCGGCGGCATGGGAAC 61.811 66.667 10.53 10.64 32.92 3.62
958 959 4.337177 TGTTCGGCGGCATGGGAA 62.337 61.111 10.53 0.78 0.00 3.97
959 960 4.776322 CTGTTCGGCGGCATGGGA 62.776 66.667 10.53 0.00 0.00 4.37
960 961 4.776322 TCTGTTCGGCGGCATGGG 62.776 66.667 10.53 0.00 0.00 4.00
961 962 2.745884 TTCTGTTCGGCGGCATGG 60.746 61.111 10.53 0.00 0.00 3.66
962 963 2.480555 GTTCTGTTCGGCGGCATG 59.519 61.111 10.53 0.00 0.00 4.06
963 964 2.746277 GGTTCTGTTCGGCGGCAT 60.746 61.111 10.53 0.00 0.00 4.40
1031 1032 4.899239 GGGATCAGCACTCGGCCG 62.899 72.222 22.12 22.12 46.50 6.13
1032 1033 3.785859 TGGGATCAGCACTCGGCC 61.786 66.667 0.00 0.00 46.50 6.13
1049 1050 2.594592 GTTTCCTGTGGCCGCTGT 60.595 61.111 18.96 0.00 0.00 4.40
1064 1065 4.393680 TGCTATATTCGTTTCGGCTTTGTT 59.606 37.500 0.00 0.00 0.00 2.83
1111 1112 1.546029 AGCTGCACAGTCGTCAAGATA 59.454 47.619 1.02 0.00 0.00 1.98
1112 1113 0.319728 AGCTGCACAGTCGTCAAGAT 59.680 50.000 1.02 0.00 0.00 2.40
1113 1114 0.319040 GAGCTGCACAGTCGTCAAGA 60.319 55.000 1.02 0.00 0.00 3.02
1395 1433 0.101219 GCAGAACAAATGGCCGATCC 59.899 55.000 0.00 0.00 0.00 3.36
1402 1440 6.564499 CGGAAATCAAAAAGCAGAACAAATGG 60.564 38.462 0.00 0.00 0.00 3.16
1409 1447 4.201970 ACGAACGGAAATCAAAAAGCAGAA 60.202 37.500 0.00 0.00 0.00 3.02
1421 1459 1.740296 CCAGCGGACGAACGGAAAT 60.740 57.895 0.00 0.00 0.00 2.17
1427 1466 3.554692 CATCGCCAGCGGACGAAC 61.555 66.667 12.71 0.00 42.31 3.95
1434 1473 4.309347 GCAGCATCATCGCCAGCG 62.309 66.667 5.50 5.50 41.35 5.18
1437 1476 2.841160 GCATGCAGCATCATCGCCA 61.841 57.895 14.21 0.00 44.79 5.69
1732 1774 5.625311 GCGGTTTCAACATTAACTCTGAAAG 59.375 40.000 7.55 1.42 38.19 2.62
1744 1786 3.568093 GCACTTGCGGTTTCAACAT 57.432 47.368 0.00 0.00 0.00 2.71
1826 1870 7.196331 GGAATGGATATTTTGAGAGTTTTCCG 58.804 38.462 0.00 0.00 0.00 4.30
1948 1996 6.429385 GGAAATTATGAATGGACTGAGCTAGG 59.571 42.308 0.00 0.00 0.00 3.02
1951 1999 5.591877 GTGGAAATTATGAATGGACTGAGCT 59.408 40.000 0.00 0.00 0.00 4.09
1952 2000 5.591877 AGTGGAAATTATGAATGGACTGAGC 59.408 40.000 0.00 0.00 0.00 4.26
2013 2066 6.598064 AGAGTTTAGCACAAAGTTACACTGTT 59.402 34.615 0.00 0.00 26.10 3.16
2042 2096 4.792068 ACTTGGGTTTCTGAAGATCAACA 58.208 39.130 0.00 0.00 0.00 3.33
2121 2179 1.064758 AGAATGTGGGCCTATTTGCGA 60.065 47.619 4.53 0.00 0.00 5.10
2122 2180 1.066002 CAGAATGTGGGCCTATTTGCG 59.934 52.381 4.53 0.00 0.00 4.85
2123 2181 2.877043 CAGAATGTGGGCCTATTTGC 57.123 50.000 4.53 0.00 0.00 3.68
2147 2219 7.396907 TCCATGATGTTTACTTGGAATGTTCAT 59.603 33.333 0.00 0.00 38.19 2.57
2150 2222 6.721208 AGTCCATGATGTTTACTTGGAATGTT 59.279 34.615 0.00 0.00 41.11 2.71
2160 2232 8.680903 AGAATCATTCAAGTCCATGATGTTTAC 58.319 33.333 0.00 0.00 38.88 2.01
2161 2233 8.812513 AGAATCATTCAAGTCCATGATGTTTA 57.187 30.769 0.00 0.00 38.88 2.01
2163 2235 7.713734 AAGAATCATTCAAGTCCATGATGTT 57.286 32.000 0.00 0.00 38.88 2.71
2164 2236 7.713734 AAAGAATCATTCAAGTCCATGATGT 57.286 32.000 0.00 0.00 38.88 3.06
2168 2240 8.396390 CAGAGTAAAGAATCATTCAAGTCCATG 58.604 37.037 0.00 0.00 0.00 3.66
2172 2244 8.316640 ACACAGAGTAAAGAATCATTCAAGTC 57.683 34.615 0.00 0.00 0.00 3.01
2173 2245 9.429359 CTACACAGAGTAAAGAATCATTCAAGT 57.571 33.333 0.00 0.00 30.92 3.16
2179 2325 8.083828 ACCATCTACACAGAGTAAAGAATCAT 57.916 34.615 0.00 0.00 33.22 2.45
2189 2335 5.480422 TGTTGTATGACCATCTACACAGAGT 59.520 40.000 0.00 0.00 33.22 3.24
2190 2336 5.965922 TGTTGTATGACCATCTACACAGAG 58.034 41.667 0.00 0.00 33.22 3.35
2195 2341 5.163447 GGTAGCTGTTGTATGACCATCTACA 60.163 44.000 0.00 0.00 0.00 2.74
2197 2343 4.959839 TGGTAGCTGTTGTATGACCATCTA 59.040 41.667 0.00 0.00 32.10 1.98
2211 2357 1.270907 CCTTCCACTCTGGTAGCTGT 58.729 55.000 0.00 0.00 39.03 4.40
2244 2390 6.478673 TCATAATGTTATACGCCAGTCACTTG 59.521 38.462 0.00 0.00 0.00 3.16
2292 2445 5.131142 CCTTAATACTTCCAGGGTCATGACT 59.869 44.000 24.50 3.64 0.00 3.41
2293 2446 5.368989 CCTTAATACTTCCAGGGTCATGAC 58.631 45.833 17.91 17.91 0.00 3.06
2294 2447 4.141482 GCCTTAATACTTCCAGGGTCATGA 60.141 45.833 0.00 0.00 0.00 3.07
2295 2448 4.137543 GCCTTAATACTTCCAGGGTCATG 58.862 47.826 0.00 0.00 0.00 3.07
2296 2449 3.785887 TGCCTTAATACTTCCAGGGTCAT 59.214 43.478 0.00 0.00 0.00 3.06
2297 2450 3.186283 TGCCTTAATACTTCCAGGGTCA 58.814 45.455 0.00 0.00 0.00 4.02
2298 2451 3.433740 CCTGCCTTAATACTTCCAGGGTC 60.434 52.174 0.00 0.00 36.94 4.46
2309 2462 4.009675 CAAGTGTTGCTCCTGCCTTAATA 58.990 43.478 0.00 0.00 38.71 0.98
2314 2467 1.228367 CCAAGTGTTGCTCCTGCCT 60.228 57.895 0.00 0.00 38.71 4.75
2315 2468 1.518903 GACCAAGTGTTGCTCCTGCC 61.519 60.000 0.00 0.00 38.71 4.85
2316 2469 0.819259 TGACCAAGTGTTGCTCCTGC 60.819 55.000 0.00 0.00 40.20 4.85
2374 2527 3.586892 GGCCTTTACATATAGTCCTCGC 58.413 50.000 0.00 0.00 0.00 5.03
2422 2575 2.482142 GCGCCTGTGCTTCTAGTTCTAT 60.482 50.000 0.00 0.00 34.43 1.98
2469 2626 5.286082 GCACTTTGGATTATTTTGCACTACG 59.714 40.000 0.00 0.00 0.00 3.51
2470 2627 6.389906 AGCACTTTGGATTATTTTGCACTAC 58.610 36.000 0.00 0.00 0.00 2.73
2471 2628 6.350110 GGAGCACTTTGGATTATTTTGCACTA 60.350 38.462 0.00 0.00 0.00 2.74
2472 2629 5.473039 GAGCACTTTGGATTATTTTGCACT 58.527 37.500 0.00 0.00 0.00 4.40
2475 2632 4.819769 TGGAGCACTTTGGATTATTTTGC 58.180 39.130 0.00 0.00 0.00 3.68
2512 2671 6.209391 AGGATGAGAAAAATGAACCGATTGTT 59.791 34.615 0.00 0.00 40.81 2.83
2513 2672 5.711976 AGGATGAGAAAAATGAACCGATTGT 59.288 36.000 0.00 0.00 0.00 2.71
2681 2840 4.327357 AGTCGCGAGATAGTTGTGAAAATG 59.673 41.667 10.24 0.00 45.19 2.32
2705 2864 5.588648 TCGATGAGATATGTGTGTAGTGTGA 59.411 40.000 0.00 0.00 0.00 3.58
2765 3092 4.158949 TCAGGGAATGCAATCATGTTTGAG 59.841 41.667 18.58 0.00 34.73 3.02
2779 3106 8.737168 TTCTTGTATTACTCAATCAGGGAATG 57.263 34.615 0.00 0.00 0.00 2.67
2825 3154 0.951558 AATTGTGCCAGTGGACGTTC 59.048 50.000 15.20 0.00 0.00 3.95
2910 3239 1.667724 CATCCTCGAATGCACCTTCAC 59.332 52.381 0.00 0.00 0.00 3.18
2924 3253 1.861575 GATTTCTCCGCGTTCATCCTC 59.138 52.381 4.92 0.00 0.00 3.71
2934 3263 2.304751 TTCCCTTACGATTTCTCCGC 57.695 50.000 0.00 0.00 0.00 5.54
2935 3264 3.370061 GTGTTTCCCTTACGATTTCTCCG 59.630 47.826 0.00 0.00 0.00 4.63
2963 3292 3.708890 CATTTTGTCTTTGAGTGCTGCA 58.291 40.909 0.00 0.00 0.00 4.41
2965 3294 3.488310 GTGCATTTTGTCTTTGAGTGCTG 59.512 43.478 0.00 0.00 32.67 4.41
3004 3333 5.063204 TGTTCCTCTTGTATTGACTTGTGG 58.937 41.667 0.00 0.00 0.00 4.17
3036 3365 7.168135 GCTCCTTATTTCTCTTGTTTGTTGTTG 59.832 37.037 0.00 0.00 0.00 3.33
3059 3388 3.157087 TGGATTTCAAAACCTCCAGCTC 58.843 45.455 0.00 0.00 32.92 4.09
3060 3389 3.243359 TGGATTTCAAAACCTCCAGCT 57.757 42.857 0.00 0.00 32.92 4.24
3061 3390 3.368739 CCATGGATTTCAAAACCTCCAGC 60.369 47.826 5.56 0.00 40.91 4.85
3062 3391 3.196254 CCCATGGATTTCAAAACCTCCAG 59.804 47.826 15.22 0.00 40.91 3.86
3063 3392 3.172339 CCCATGGATTTCAAAACCTCCA 58.828 45.455 15.22 0.00 41.76 3.86
3064 3393 2.501316 CCCCATGGATTTCAAAACCTCC 59.499 50.000 15.22 0.00 0.00 4.30
3097 3537 9.753674 CTCTTAGTAGGATCAAGATCTCCTAAT 57.246 37.037 11.90 11.90 43.88 1.73
3165 3605 4.413520 TCCTCAAATCTAGGGCAAAGCTAT 59.586 41.667 0.00 0.00 34.66 2.97
3172 3612 1.511613 CCCTCCTCAAATCTAGGGCA 58.488 55.000 0.00 0.00 42.22 5.36
3193 3633 4.328983 CGTGGCTTGACGATATAAGTTGTT 59.671 41.667 0.00 0.00 42.10 2.83
3245 3685 3.593551 CTGCGCGCGGTGAAATTGT 62.594 57.895 33.06 0.00 0.00 2.71
3265 3705 2.041081 CCCTTTGGACCATGTCAACCTA 59.959 50.000 0.00 0.00 33.68 3.08
3318 3765 3.089284 ACACATCGGACAGTCTGACATA 58.911 45.455 14.67 0.00 34.08 2.29
3340 3787 2.412870 TCAGTACCAATGTGCAGTTCG 58.587 47.619 0.00 0.00 0.00 3.95
3364 3816 5.662657 TCTCTAGATGATGTTGGATGTTCCA 59.337 40.000 0.00 0.00 46.61 3.53
3408 3860 2.511600 GGATCTGACCCAACGCGG 60.512 66.667 12.47 0.00 0.00 6.46
3420 3872 0.980231 GGCAGTCTGACCTGGGATCT 60.980 60.000 3.32 0.00 32.92 2.75
3499 3952 3.056035 CGTAAGCAAGTAGAAGAAGGGGT 60.056 47.826 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.