Multiple sequence alignment - TraesCS7D01G103300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G103300 chr7D 100.000 7658 0 0 1 7658 63324687 63332344 0.000000e+00 14142.0
1 TraesCS7D01G103300 chr7D 86.337 1032 88 19 2559 3561 63326241 63327248 0.000000e+00 1075.0
2 TraesCS7D01G103300 chr7D 86.337 1032 88 19 1555 2562 63327245 63328247 0.000000e+00 1075.0
3 TraesCS7D01G103300 chr7D 92.605 622 32 6 3657 4275 63328180 63328790 0.000000e+00 881.0
4 TraesCS7D01G103300 chr7D 92.605 622 32 6 3494 4104 63328343 63328961 0.000000e+00 881.0
5 TraesCS7D01G103300 chr7D 91.247 457 27 5 3820 4275 63328180 63328624 1.830000e-170 610.0
6 TraesCS7D01G103300 chr7D 91.247 457 27 5 3494 3938 63328506 63328961 1.830000e-170 610.0
7 TraesCS7D01G103300 chr7D 89.347 291 21 6 3986 4275 63328180 63328461 2.630000e-94 357.0
8 TraesCS7D01G103300 chr7D 89.347 291 21 6 3494 3775 63328672 63328961 2.630000e-94 357.0
9 TraesCS7D01G103300 chr7D 95.545 202 9 0 1 202 63282303 63282504 2.670000e-84 324.0
10 TraesCS7D01G103300 chr7D 87.129 202 22 4 3 202 572018135 572017936 7.730000e-55 226.0
11 TraesCS7D01G103300 chr7D 77.665 197 29 11 1092 1279 492148828 492149018 1.050000e-18 106.0
12 TraesCS7D01G103300 chr7D 86.250 80 7 3 6825 6904 168268529 168268454 4.920000e-12 84.2
13 TraesCS7D01G103300 chr7D 92.593 54 4 0 204 257 243965477 243965424 2.290000e-10 78.7
14 TraesCS7D01G103300 chr7D 100.000 39 0 0 6916 6954 63331563 63331601 1.070000e-08 73.1
15 TraesCS7D01G103300 chr7B 94.591 3568 134 25 1911 5446 3684642 3688182 0.000000e+00 5465.0
16 TraesCS7D01G103300 chr7B 95.318 1367 51 6 5449 6805 3688152 3689515 0.000000e+00 2158.0
17 TraesCS7D01G103300 chr7B 86.705 1038 96 17 1555 2562 3685292 3686317 0.000000e+00 1114.0
18 TraesCS7D01G103300 chr7B 92.389 565 26 11 3552 4104 3686451 3687010 0.000000e+00 789.0
19 TraesCS7D01G103300 chr7B 88.746 622 36 16 3657 4275 3686250 3686840 0.000000e+00 730.0
20 TraesCS7D01G103300 chr7B 86.115 677 61 13 2896 3561 3684641 3685295 0.000000e+00 699.0
21 TraesCS7D01G103300 chr7B 91.247 457 25 8 3494 3938 3686557 3687010 6.570000e-170 608.0
22 TraesCS7D01G103300 chr7B 86.214 457 30 13 3820 4275 3686250 3686674 1.510000e-126 464.0
23 TraesCS7D01G103300 chr7B 81.546 634 20 35 725 1329 3684052 3684617 4.240000e-117 433.0
24 TraesCS7D01G103300 chr7B 90.034 291 18 7 3494 3775 3686722 3687010 4.370000e-97 366.0
25 TraesCS7D01G103300 chr7B 87.442 215 18 5 3986 4200 3686250 3686455 9.930000e-59 239.0
26 TraesCS7D01G103300 chr7B 88.000 150 12 4 227 374 3682544 3682689 1.020000e-38 172.0
27 TraesCS7D01G103300 chr7B 84.545 110 12 1 7535 7644 31381009 31380905 3.780000e-18 104.0
28 TraesCS7D01G103300 chr7B 77.157 197 30 11 1092 1279 521578103 521578293 4.890000e-17 100.0
29 TraesCS7D01G103300 chr7B 82.828 99 11 3 7545 7642 30685891 30685798 4.920000e-12 84.2
30 TraesCS7D01G103300 chr7B 82.105 95 12 2 7548 7642 30611408 30611319 8.240000e-10 76.8
31 TraesCS7D01G103300 chr7A 88.856 3024 156 60 671 3635 65969684 65972585 0.000000e+00 3550.0
32 TraesCS7D01G103300 chr7A 96.128 1472 48 6 5449 6915 65974700 65976167 0.000000e+00 2394.0
33 TraesCS7D01G103300 chr7A 96.815 942 24 4 4272 5209 65973431 65974370 0.000000e+00 1568.0
34 TraesCS7D01G103300 chr7A 84.846 1036 94 21 1555 2562 65971511 65972511 0.000000e+00 985.0
35 TraesCS7D01G103300 chr7A 90.860 744 51 6 6916 7656 65976129 65976858 0.000000e+00 981.0
36 TraesCS7D01G103300 chr7A 83.657 875 88 20 2691 3561 65970691 65971514 0.000000e+00 773.0
37 TraesCS7D01G103300 chr7A 89.136 359 26 5 3635 3984 65972624 65972978 1.180000e-117 435.0
38 TraesCS7D01G103300 chr7A 88.858 359 28 5 3798 4148 65972624 65972978 1.530000e-116 431.0
39 TraesCS7D01G103300 chr7A 89.349 338 24 7 3494 3821 65972646 65972981 1.540000e-111 414.0
40 TraesCS7D01G103300 chr7A 83.586 396 41 14 7059 7449 66162959 66163335 4.400000e-92 350.0
41 TraesCS7D01G103300 chr7A 91.949 236 13 4 5213 5446 65974499 65974730 7.410000e-85 326.0
42 TraesCS7D01G103300 chr7A 89.238 223 20 2 5453 5674 65983316 65983535 7.570000e-70 276.0
43 TraesCS7D01G103300 chr7A 95.745 141 6 0 3820 3960 65972444 65972584 2.150000e-55 228.0
44 TraesCS7D01G103300 chr7A 95.070 142 7 0 3657 3798 65972444 65972585 2.780000e-54 224.0
45 TraesCS7D01G103300 chr7A 93.662 142 9 0 3986 4127 65972444 65972585 6.020000e-51 213.0
46 TraesCS7D01G103300 chr7A 88.189 127 12 3 7163 7288 276156046 276155922 1.720000e-31 148.0
47 TraesCS7D01G103300 chr7A 77.665 197 29 11 1092 1279 558402781 558402971 1.050000e-18 106.0
48 TraesCS7D01G103300 chr7A 85.859 99 13 1 7540 7638 66163349 66163446 3.780000e-18 104.0
49 TraesCS7D01G103300 chr7A 87.342 79 7 3 6826 6904 88815872 88815797 3.810000e-13 87.9
50 TraesCS7D01G103300 chrUn 95.050 202 10 0 1 202 91195848 91195647 1.240000e-82 318.0
51 TraesCS7D01G103300 chrUn 86.992 123 13 3 7167 7288 64138716 64138836 1.340000e-27 135.0
52 TraesCS7D01G103300 chrUn 86.250 80 7 3 6825 6904 91850159 91850084 4.920000e-12 84.2
53 TraesCS7D01G103300 chr3B 91.626 203 15 2 1 202 689682394 689682595 5.850000e-71 279.0
54 TraesCS7D01G103300 chr3B 91.000 200 16 2 3 201 689670491 689670689 1.270000e-67 268.0
55 TraesCS7D01G103300 chr4D 86.429 140 14 4 7152 7288 31540442 31540579 1.720000e-31 148.0
56 TraesCS7D01G103300 chr3D 88.189 127 12 3 7163 7288 519171800 519171676 1.720000e-31 148.0
57 TraesCS7D01G103300 chr3D 98.214 56 1 0 1 56 18677186 18677241 1.760000e-16 99.0
58 TraesCS7D01G103300 chr1A 86.667 120 10 4 7163 7281 514935585 514935471 2.240000e-25 128.0
59 TraesCS7D01G103300 chr1A 86.667 120 10 4 7163 7281 515191622 515191508 2.240000e-25 128.0
60 TraesCS7D01G103300 chr1A 100.000 28 0 0 231 258 300567010 300566983 1.400000e-02 52.8
61 TraesCS7D01G103300 chr6A 76.371 237 45 8 262 493 498322706 498322936 4.860000e-22 117.0
62 TraesCS7D01G103300 chr6A 77.103 214 33 12 1083 1282 449584443 449584654 8.120000e-20 110.0
63 TraesCS7D01G103300 chr6B 77.778 207 32 9 1083 1282 514119179 514118980 1.750000e-21 115.0
64 TraesCS7D01G103300 chr6D 79.042 167 21 9 1129 1282 312763318 312763483 1.360000e-17 102.0
65 TraesCS7D01G103300 chr6D 86.250 80 7 2 6825 6904 455274044 455273969 4.920000e-12 84.2
66 TraesCS7D01G103300 chr5D 87.342 79 7 3 6826 6904 494660527 494660452 3.810000e-13 87.9
67 TraesCS7D01G103300 chr5D 87.013 77 6 3 6825 6901 126188112 126188184 4.920000e-12 84.2
68 TraesCS7D01G103300 chr1B 86.667 75 6 3 6825 6899 578635201 578635131 6.370000e-11 80.5
69 TraesCS7D01G103300 chr2D 95.556 45 2 0 6860 6904 35528548 35528504 1.070000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G103300 chr7D 63324687 63332344 7657 False 14142.000000 14142 100.000000 1 7658 1 chr7D.!!$F2 7657
1 TraesCS7D01G103300 chr7D 63326241 63331601 5360 False 657.677778 1075 91.008000 1555 6954 9 chr7D.!!$F4 5399
2 TraesCS7D01G103300 chr7B 3682544 3689515 6971 False 1103.083333 5465 89.028917 227 6805 12 chr7B.!!$F2 6578
3 TraesCS7D01G103300 chr7A 65969684 65976858 7174 False 963.230769 3550 91.148538 671 7656 13 chr7A.!!$F3 6985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.035739 ACCGGGAGCGTAACACATTT 59.964 50.000 6.32 0.0 0.00 2.32 F
646 1773 0.108585 ATGCACACAGGTTCGGTTCT 59.891 50.000 0.00 0.0 0.00 3.01 F
990 2128 0.325016 ACCGAACCGTATCCTCCCTT 60.325 55.000 0.00 0.0 0.00 3.95 F
1484 2666 0.032017 TCCTCAGGGAGTTAGGGAGC 60.032 60.000 0.00 0.0 36.57 4.70 F
1543 2725 0.110056 CATGTTGTGCTTGGCGTCTC 60.110 55.000 0.00 0.0 0.00 3.36 F
1551 2733 0.171231 GCTTGGCGTCTCCATTTTCC 59.829 55.000 0.00 0.0 46.04 3.13 F
3703 5100 6.321181 TGTCAGTTTGTTTTCTATCTTTGCCT 59.679 34.615 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 2491 0.176680 CCAATCGAGACAGACAGGGG 59.823 60.000 0.0 0.0 0.00 4.79 R
1484 2666 0.947244 GCGCATCATCTTAACCCTGG 59.053 55.000 0.3 0.0 0.00 4.45 R
3675 5072 7.702348 GCAAAGATAGAAAACAAACTGACACTT 59.298 33.333 0.0 0.0 0.00 3.16 R
3701 5098 3.006940 TGCTTAGACGCCACAATTTAGG 58.993 45.455 0.0 0.0 0.00 2.69 R
3708 5105 4.069304 AGTTTAAATGCTTAGACGCCACA 58.931 39.130 0.0 0.0 29.52 4.17 R
3709 5106 4.153475 TCAGTTTAAATGCTTAGACGCCAC 59.847 41.667 0.0 0.0 29.52 5.01 R
6918 8963 8.607713 TGGACTTTACATCTAAACAAATAGGGA 58.392 33.333 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.530857 GCTACGCGGCCCACATCT 62.531 66.667 12.47 0.00 0.00 2.90
19 20 2.586079 CTACGCGGCCCACATCTG 60.586 66.667 12.47 0.00 0.00 2.90
20 21 4.155733 TACGCGGCCCACATCTGG 62.156 66.667 12.47 0.00 37.29 3.86
28 29 4.722193 CCACATCTGGGACACCAC 57.278 61.111 0.00 0.00 43.37 4.16
29 30 2.069776 CCACATCTGGGACACCACT 58.930 57.895 0.00 0.00 43.37 4.00
30 31 0.321919 CCACATCTGGGACACCACTG 60.322 60.000 0.00 0.00 43.37 3.66
31 32 0.321919 CACATCTGGGACACCACTGG 60.322 60.000 0.00 0.00 43.37 4.00
32 33 0.473694 ACATCTGGGACACCACTGGA 60.474 55.000 0.71 0.00 43.37 3.86
33 34 0.036010 CATCTGGGACACCACTGGAC 60.036 60.000 0.71 0.00 43.37 4.02
34 35 0.473694 ATCTGGGACACCACTGGACA 60.474 55.000 0.71 0.00 43.37 4.02
35 36 0.473694 TCTGGGACACCACTGGACAT 60.474 55.000 0.71 0.00 43.37 3.06
36 37 0.321919 CTGGGACACCACTGGACATG 60.322 60.000 0.71 0.00 43.37 3.21
37 38 1.059584 TGGGACACCACTGGACATGT 61.060 55.000 0.00 0.00 43.37 3.21
38 39 0.110486 GGGACACCACTGGACATGTT 59.890 55.000 0.00 0.00 36.50 2.71
39 40 1.349688 GGGACACCACTGGACATGTTA 59.650 52.381 0.00 0.00 36.50 2.41
40 41 2.224670 GGGACACCACTGGACATGTTAA 60.225 50.000 0.00 0.00 36.50 2.01
41 42 3.074412 GGACACCACTGGACATGTTAAG 58.926 50.000 0.00 3.34 0.00 1.85
42 43 3.244422 GGACACCACTGGACATGTTAAGA 60.244 47.826 13.86 0.00 0.00 2.10
43 44 4.385825 GACACCACTGGACATGTTAAGAA 58.614 43.478 13.86 0.00 0.00 2.52
44 45 4.389374 ACACCACTGGACATGTTAAGAAG 58.611 43.478 13.86 7.93 0.00 2.85
45 46 4.102524 ACACCACTGGACATGTTAAGAAGA 59.897 41.667 13.86 0.00 0.00 2.87
46 47 5.063204 CACCACTGGACATGTTAAGAAGAA 58.937 41.667 13.86 0.00 0.00 2.52
47 48 5.180117 CACCACTGGACATGTTAAGAAGAAG 59.820 44.000 13.86 1.16 0.00 2.85
48 49 4.154918 CCACTGGACATGTTAAGAAGAAGC 59.845 45.833 13.86 0.00 0.00 3.86
49 50 3.997021 ACTGGACATGTTAAGAAGAAGCG 59.003 43.478 13.86 0.00 0.00 4.68
50 51 4.245660 CTGGACATGTTAAGAAGAAGCGA 58.754 43.478 0.00 0.00 0.00 4.93
51 52 4.637276 TGGACATGTTAAGAAGAAGCGAA 58.363 39.130 0.00 0.00 0.00 4.70
52 53 4.451096 TGGACATGTTAAGAAGAAGCGAAC 59.549 41.667 0.00 0.00 0.00 3.95
53 54 4.142881 GGACATGTTAAGAAGAAGCGAACC 60.143 45.833 0.00 0.00 0.00 3.62
54 55 3.751698 ACATGTTAAGAAGAAGCGAACCC 59.248 43.478 0.00 0.00 0.00 4.11
55 56 2.774687 TGTTAAGAAGAAGCGAACCCC 58.225 47.619 0.00 0.00 0.00 4.95
56 57 2.370849 TGTTAAGAAGAAGCGAACCCCT 59.629 45.455 0.00 0.00 0.00 4.79
57 58 3.001414 GTTAAGAAGAAGCGAACCCCTC 58.999 50.000 0.00 0.00 0.00 4.30
58 59 0.325272 AAGAAGAAGCGAACCCCTCC 59.675 55.000 0.00 0.00 0.00 4.30
59 60 0.545548 AGAAGAAGCGAACCCCTCCT 60.546 55.000 0.00 0.00 0.00 3.69
60 61 0.391793 GAAGAAGCGAACCCCTCCTG 60.392 60.000 0.00 0.00 0.00 3.86
61 62 2.436824 GAAGCGAACCCCTCCTGC 60.437 66.667 0.00 0.00 0.00 4.85
62 63 4.394712 AAGCGAACCCCTCCTGCG 62.395 66.667 0.00 0.00 0.00 5.18
65 66 3.691342 CGAACCCCTCCTGCGTGA 61.691 66.667 0.00 0.00 0.00 4.35
66 67 2.266055 GAACCCCTCCTGCGTGAG 59.734 66.667 0.00 0.00 0.00 3.51
71 72 4.803426 CCTCCTGCGTGAGGCGAC 62.803 72.222 8.26 0.00 45.13 5.19
77 78 2.430244 GCGTGAGGCGACGAGAAA 60.430 61.111 15.00 0.00 44.77 2.52
78 79 2.717809 GCGTGAGGCGACGAGAAAC 61.718 63.158 15.00 0.00 44.77 2.78
79 80 2.426183 CGTGAGGCGACGAGAAACG 61.426 63.158 0.00 0.00 44.77 3.60
80 81 1.081641 GTGAGGCGACGAGAAACGA 60.082 57.895 0.00 0.00 45.77 3.85
81 82 1.081641 TGAGGCGACGAGAAACGAC 60.082 57.895 0.00 0.00 45.77 4.34
82 83 3.352524 AGGCGACGAGAAACGACT 58.647 55.556 0.00 0.00 45.77 4.18
83 84 2.548178 AGGCGACGAGAAACGACTA 58.452 52.632 0.00 0.00 46.31 2.59
84 85 0.447011 AGGCGACGAGAAACGACTAG 59.553 55.000 0.00 0.00 46.31 2.57
85 86 0.522915 GGCGACGAGAAACGACTAGG 60.523 60.000 0.00 0.00 45.77 3.02
86 87 1.132780 GCGACGAGAAACGACTAGGC 61.133 60.000 0.00 0.00 45.77 3.93
87 88 0.447011 CGACGAGAAACGACTAGGCT 59.553 55.000 0.00 0.00 45.77 4.58
88 89 1.790838 CGACGAGAAACGACTAGGCTG 60.791 57.143 0.00 0.00 45.77 4.85
89 90 1.199558 GACGAGAAACGACTAGGCTGT 59.800 52.381 0.00 0.00 45.77 4.40
90 91 2.417933 GACGAGAAACGACTAGGCTGTA 59.582 50.000 0.00 0.00 45.77 2.74
91 92 2.419324 ACGAGAAACGACTAGGCTGTAG 59.581 50.000 0.00 0.00 45.77 2.74
92 93 2.223294 CGAGAAACGACTAGGCTGTAGG 60.223 54.545 0.00 0.00 45.77 3.18
93 94 1.477295 AGAAACGACTAGGCTGTAGGC 59.523 52.381 0.00 0.00 41.43 3.93
102 103 4.154347 GCTGTAGGCTGCGGCTCT 62.154 66.667 26.49 15.05 39.70 4.09
103 104 2.105930 CTGTAGGCTGCGGCTCTC 59.894 66.667 18.85 8.33 39.70 3.20
104 105 3.438017 CTGTAGGCTGCGGCTCTCC 62.438 68.421 18.85 4.58 39.70 3.71
105 106 3.151022 GTAGGCTGCGGCTCTCCT 61.151 66.667 18.85 8.42 39.70 3.69
106 107 2.835431 TAGGCTGCGGCTCTCCTC 60.835 66.667 18.85 0.00 39.70 3.71
109 110 4.527583 GCTGCGGCTCTCCTCCTG 62.528 72.222 11.21 0.00 35.22 3.86
110 111 2.757508 CTGCGGCTCTCCTCCTGA 60.758 66.667 0.00 0.00 0.00 3.86
111 112 2.283894 TGCGGCTCTCCTCCTGAA 60.284 61.111 0.00 0.00 0.00 3.02
112 113 1.684386 CTGCGGCTCTCCTCCTGAAT 61.684 60.000 0.00 0.00 0.00 2.57
113 114 1.068921 GCGGCTCTCCTCCTGAATC 59.931 63.158 0.00 0.00 0.00 2.52
114 115 1.745264 CGGCTCTCCTCCTGAATCC 59.255 63.158 0.00 0.00 0.00 3.01
115 116 1.753368 CGGCTCTCCTCCTGAATCCC 61.753 65.000 0.00 0.00 0.00 3.85
116 117 1.414866 GGCTCTCCTCCTGAATCCCC 61.415 65.000 0.00 0.00 0.00 4.81
117 118 0.399806 GCTCTCCTCCTGAATCCCCT 60.400 60.000 0.00 0.00 0.00 4.79
118 119 1.974197 GCTCTCCTCCTGAATCCCCTT 60.974 57.143 0.00 0.00 0.00 3.95
119 120 2.486716 CTCTCCTCCTGAATCCCCTTT 58.513 52.381 0.00 0.00 0.00 3.11
120 121 2.437651 CTCTCCTCCTGAATCCCCTTTC 59.562 54.545 0.00 0.00 0.00 2.62
121 122 2.046447 TCTCCTCCTGAATCCCCTTTCT 59.954 50.000 0.00 0.00 0.00 2.52
122 123 2.849318 CTCCTCCTGAATCCCCTTTCTT 59.151 50.000 0.00 0.00 0.00 2.52
123 124 2.846827 TCCTCCTGAATCCCCTTTCTTC 59.153 50.000 0.00 0.00 0.00 2.87
124 125 2.849318 CCTCCTGAATCCCCTTTCTTCT 59.151 50.000 0.00 0.00 0.00 2.85
125 126 3.118075 CCTCCTGAATCCCCTTTCTTCTC 60.118 52.174 0.00 0.00 0.00 2.87
126 127 2.846827 TCCTGAATCCCCTTTCTTCTCC 59.153 50.000 0.00 0.00 0.00 3.71
127 128 2.849318 CCTGAATCCCCTTTCTTCTCCT 59.151 50.000 0.00 0.00 0.00 3.69
128 129 3.371380 CCTGAATCCCCTTTCTTCTCCTG 60.371 52.174 0.00 0.00 0.00 3.86
129 130 3.260205 TGAATCCCCTTTCTTCTCCTGT 58.740 45.455 0.00 0.00 0.00 4.00
130 131 3.009473 TGAATCCCCTTTCTTCTCCTGTG 59.991 47.826 0.00 0.00 0.00 3.66
131 132 1.362224 TCCCCTTTCTTCTCCTGTGG 58.638 55.000 0.00 0.00 0.00 4.17
132 133 1.132527 TCCCCTTTCTTCTCCTGTGGA 60.133 52.381 0.00 0.00 0.00 4.02
133 134 1.705186 CCCCTTTCTTCTCCTGTGGAA 59.295 52.381 0.00 0.00 0.00 3.53
134 135 2.553247 CCCCTTTCTTCTCCTGTGGAAC 60.553 54.545 0.00 0.00 37.35 3.62
135 136 2.553247 CCCTTTCTTCTCCTGTGGAACC 60.553 54.545 0.00 0.00 34.36 3.62
136 137 2.553247 CCTTTCTTCTCCTGTGGAACCC 60.553 54.545 0.00 0.00 34.36 4.11
137 138 2.118403 TTCTTCTCCTGTGGAACCCT 57.882 50.000 0.00 0.00 34.36 4.34
138 139 3.269592 TTCTTCTCCTGTGGAACCCTA 57.730 47.619 0.00 0.00 34.36 3.53
139 140 2.821437 TCTTCTCCTGTGGAACCCTAG 58.179 52.381 0.00 0.00 34.36 3.02
140 141 2.382305 TCTTCTCCTGTGGAACCCTAGA 59.618 50.000 0.00 0.00 34.36 2.43
141 142 3.173965 CTTCTCCTGTGGAACCCTAGAA 58.826 50.000 0.00 0.00 34.36 2.10
142 143 3.491766 TCTCCTGTGGAACCCTAGAAT 57.508 47.619 0.00 0.00 34.36 2.40
143 144 3.803340 TCTCCTGTGGAACCCTAGAATT 58.197 45.455 0.00 0.00 34.36 2.17
144 145 3.775316 TCTCCTGTGGAACCCTAGAATTC 59.225 47.826 0.00 0.00 34.36 2.17
145 146 3.777522 CTCCTGTGGAACCCTAGAATTCT 59.222 47.826 13.56 13.56 34.36 2.40
146 147 4.955335 TCCTGTGGAACCCTAGAATTCTA 58.045 43.478 14.42 14.42 34.36 2.10
147 148 5.538877 TCCTGTGGAACCCTAGAATTCTAT 58.461 41.667 15.47 0.75 34.36 1.98
148 149 5.602978 TCCTGTGGAACCCTAGAATTCTATC 59.397 44.000 15.47 9.94 34.36 2.08
149 150 5.366768 CCTGTGGAACCCTAGAATTCTATCA 59.633 44.000 15.47 5.47 34.36 2.15
150 151 6.463614 CCTGTGGAACCCTAGAATTCTATCAG 60.464 46.154 15.47 6.22 34.36 2.90
151 152 6.202331 TGTGGAACCCTAGAATTCTATCAGA 58.798 40.000 15.47 4.40 34.36 3.27
152 153 6.846505 TGTGGAACCCTAGAATTCTATCAGAT 59.153 38.462 15.47 2.89 34.36 2.90
153 154 7.348274 TGTGGAACCCTAGAATTCTATCAGATT 59.652 37.037 15.47 6.50 34.36 2.40
154 155 7.659390 GTGGAACCCTAGAATTCTATCAGATTG 59.341 40.741 15.47 2.55 0.00 2.67
155 156 7.348274 TGGAACCCTAGAATTCTATCAGATTGT 59.652 37.037 15.47 2.58 0.00 2.71
156 157 7.659390 GGAACCCTAGAATTCTATCAGATTGTG 59.341 40.741 15.47 1.19 0.00 3.33
157 158 7.921041 ACCCTAGAATTCTATCAGATTGTGA 57.079 36.000 15.47 0.00 40.38 3.58
158 159 7.731054 ACCCTAGAATTCTATCAGATTGTGAC 58.269 38.462 15.47 0.00 38.28 3.67
159 160 7.345653 ACCCTAGAATTCTATCAGATTGTGACA 59.654 37.037 15.47 0.00 38.28 3.58
160 161 8.373981 CCCTAGAATTCTATCAGATTGTGACAT 58.626 37.037 15.47 0.00 38.28 3.06
161 162 9.421806 CCTAGAATTCTATCAGATTGTGACATC 57.578 37.037 15.47 0.00 38.28 3.06
164 165 9.979578 AGAATTCTATCAGATTGTGACATCTAC 57.020 33.333 6.06 0.00 38.28 2.59
165 166 9.979578 GAATTCTATCAGATTGTGACATCTACT 57.020 33.333 0.00 0.00 38.28 2.57
167 168 9.761504 ATTCTATCAGATTGTGACATCTACTTG 57.238 33.333 0.00 0.00 38.28 3.16
168 169 8.298729 TCTATCAGATTGTGACATCTACTTGT 57.701 34.615 0.00 0.00 38.28 3.16
169 170 9.408648 TCTATCAGATTGTGACATCTACTTGTA 57.591 33.333 0.00 0.00 38.28 2.41
172 173 7.492524 TCAGATTGTGACATCTACTTGTATCC 58.507 38.462 0.00 0.00 0.00 2.59
173 174 7.124147 TCAGATTGTGACATCTACTTGTATCCA 59.876 37.037 0.00 0.00 0.00 3.41
174 175 7.437565 CAGATTGTGACATCTACTTGTATCCAG 59.562 40.741 0.00 0.00 0.00 3.86
175 176 6.605471 TTGTGACATCTACTTGTATCCAGT 57.395 37.500 0.00 0.00 0.00 4.00
176 177 5.965922 TGTGACATCTACTTGTATCCAGTG 58.034 41.667 0.00 0.00 0.00 3.66
177 178 5.714806 TGTGACATCTACTTGTATCCAGTGA 59.285 40.000 0.00 0.00 0.00 3.41
178 179 6.210584 TGTGACATCTACTTGTATCCAGTGAA 59.789 38.462 0.00 0.00 0.00 3.18
179 180 7.093333 TGTGACATCTACTTGTATCCAGTGAAT 60.093 37.037 0.00 0.00 0.00 2.57
180 181 7.766278 GTGACATCTACTTGTATCCAGTGAATT 59.234 37.037 0.00 0.00 0.00 2.17
181 182 8.977412 TGACATCTACTTGTATCCAGTGAATTA 58.023 33.333 0.00 0.00 0.00 1.40
182 183 9.988815 GACATCTACTTGTATCCAGTGAATTAT 57.011 33.333 0.00 0.00 0.00 1.28
183 184 9.988815 ACATCTACTTGTATCCAGTGAATTATC 57.011 33.333 0.00 0.00 0.00 1.75
184 185 9.429359 CATCTACTTGTATCCAGTGAATTATCC 57.571 37.037 0.00 0.00 0.00 2.59
185 186 7.963532 TCTACTTGTATCCAGTGAATTATCCC 58.036 38.462 0.00 0.00 0.00 3.85
186 187 6.831664 ACTTGTATCCAGTGAATTATCCCT 57.168 37.500 0.00 0.00 0.00 4.20
187 188 7.931015 ACTTGTATCCAGTGAATTATCCCTA 57.069 36.000 0.00 0.00 0.00 3.53
188 189 7.736893 ACTTGTATCCAGTGAATTATCCCTAC 58.263 38.462 0.00 0.00 0.00 3.18
189 190 6.681729 TGTATCCAGTGAATTATCCCTACC 57.318 41.667 0.00 0.00 0.00 3.18
190 191 4.891992 ATCCAGTGAATTATCCCTACCG 57.108 45.455 0.00 0.00 0.00 4.02
191 192 2.969950 TCCAGTGAATTATCCCTACCGG 59.030 50.000 0.00 0.00 0.00 5.28
201 202 3.607163 CCTACCGGGAGCGTAACA 58.393 61.111 8.73 0.00 37.23 2.41
202 203 1.140375 CCTACCGGGAGCGTAACAC 59.860 63.158 8.73 0.00 37.23 3.32
203 204 1.597797 CCTACCGGGAGCGTAACACA 61.598 60.000 8.73 0.00 37.23 3.72
204 205 0.458669 CTACCGGGAGCGTAACACAT 59.541 55.000 0.00 0.00 0.00 3.21
205 206 0.896923 TACCGGGAGCGTAACACATT 59.103 50.000 6.32 0.00 0.00 2.71
206 207 0.035739 ACCGGGAGCGTAACACATTT 59.964 50.000 6.32 0.00 0.00 2.32
207 208 0.446222 CCGGGAGCGTAACACATTTG 59.554 55.000 0.00 0.00 0.00 2.32
208 209 1.434555 CGGGAGCGTAACACATTTGA 58.565 50.000 0.00 0.00 0.00 2.69
209 210 1.801771 CGGGAGCGTAACACATTTGAA 59.198 47.619 0.00 0.00 0.00 2.69
210 211 2.412325 CGGGAGCGTAACACATTTGAAC 60.412 50.000 0.00 0.00 0.00 3.18
211 212 2.812011 GGGAGCGTAACACATTTGAACT 59.188 45.455 0.00 0.00 0.00 3.01
212 213 3.252458 GGGAGCGTAACACATTTGAACTT 59.748 43.478 0.00 0.00 0.00 2.66
213 214 4.261447 GGGAGCGTAACACATTTGAACTTT 60.261 41.667 0.00 0.00 0.00 2.66
214 215 4.675114 GGAGCGTAACACATTTGAACTTTG 59.325 41.667 0.00 0.00 0.00 2.77
215 216 4.606961 AGCGTAACACATTTGAACTTTGG 58.393 39.130 0.00 0.00 0.00 3.28
216 217 4.097286 AGCGTAACACATTTGAACTTTGGT 59.903 37.500 0.00 0.00 0.00 3.67
217 218 4.206200 GCGTAACACATTTGAACTTTGGTG 59.794 41.667 0.00 0.00 0.00 4.17
218 219 4.737765 CGTAACACATTTGAACTTTGGTGG 59.262 41.667 0.00 0.00 0.00 4.61
219 220 5.449314 CGTAACACATTTGAACTTTGGTGGA 60.449 40.000 0.00 0.00 0.00 4.02
220 221 4.385358 ACACATTTGAACTTTGGTGGAC 57.615 40.909 0.00 0.00 0.00 4.02
221 222 4.023291 ACACATTTGAACTTTGGTGGACT 58.977 39.130 0.00 0.00 0.00 3.85
222 223 4.142182 ACACATTTGAACTTTGGTGGACTG 60.142 41.667 0.00 0.00 0.00 3.51
223 224 3.384467 ACATTTGAACTTTGGTGGACTGG 59.616 43.478 0.00 0.00 0.00 4.00
224 225 3.374042 TTTGAACTTTGGTGGACTGGA 57.626 42.857 0.00 0.00 0.00 3.86
225 226 3.374042 TTGAACTTTGGTGGACTGGAA 57.626 42.857 0.00 0.00 0.00 3.53
245 246 4.470304 GGAAATACCACTGTCCTCCTAACT 59.530 45.833 0.00 0.00 38.79 2.24
252 253 4.656112 CCACTGTCCTCCTAACTATCCAAT 59.344 45.833 0.00 0.00 0.00 3.16
254 255 5.363868 CACTGTCCTCCTAACTATCCAATCA 59.636 44.000 0.00 0.00 0.00 2.57
259 260 5.598830 TCCTCCTAACTATCCAATCACAGAC 59.401 44.000 0.00 0.00 0.00 3.51
260 261 5.363868 CCTCCTAACTATCCAATCACAGACA 59.636 44.000 0.00 0.00 0.00 3.41
271 273 1.053835 TCACAGACACCCTGCCTCAA 61.054 55.000 0.00 0.00 46.81 3.02
308 310 4.640771 AAAGTAGAGGCAAATCTCACCA 57.359 40.909 0.00 0.00 36.30 4.17
315 317 5.574188 AGAGGCAAATCTCACCATTAACTT 58.426 37.500 0.00 0.00 36.30 2.66
318 320 5.774690 AGGCAAATCTCACCATTAACTTTGA 59.225 36.000 0.00 0.00 0.00 2.69
319 321 5.863935 GGCAAATCTCACCATTAACTTTGAC 59.136 40.000 0.00 0.00 0.00 3.18
320 322 6.446318 GCAAATCTCACCATTAACTTTGACA 58.554 36.000 0.00 0.00 0.00 3.58
331 333 7.093509 ACCATTAACTTTGACAACAACTTTCCT 60.094 33.333 0.00 0.00 35.63 3.36
345 347 5.598417 ACAACTTTCCTGCCAGAAATAGTTT 59.402 36.000 0.00 0.00 35.30 2.66
358 360 7.983484 GCCAGAAATAGTTTTCATGATCCAATT 59.017 33.333 0.00 0.00 43.09 2.32
359 361 9.880157 CCAGAAATAGTTTTCATGATCCAATTT 57.120 29.630 0.00 0.04 43.09 1.82
370 372 9.722184 TTTCATGATCCAATTTTTCATTTAGCA 57.278 25.926 0.00 0.00 0.00 3.49
371 373 8.936070 TCATGATCCAATTTTTCATTTAGCAG 57.064 30.769 0.00 0.00 0.00 4.24
372 374 8.751242 TCATGATCCAATTTTTCATTTAGCAGA 58.249 29.630 0.00 0.00 0.00 4.26
373 375 9.373603 CATGATCCAATTTTTCATTTAGCAGAA 57.626 29.630 0.00 0.00 0.00 3.02
375 377 9.947433 TGATCCAATTTTTCATTTAGCAGAATT 57.053 25.926 0.00 0.00 0.00 2.17
414 416 6.326323 AGTTTGAAGAAGGAAAGGCCATTTAA 59.674 34.615 5.01 0.00 40.02 1.52
420 422 5.602561 AGAAGGAAAGGCCATTTAACTTTGT 59.397 36.000 5.01 1.52 40.02 2.83
424 426 6.052360 GGAAAGGCCATTTAACTTTGTCAAA 58.948 36.000 5.01 0.00 34.82 2.69
427 429 4.653801 AGGCCATTTAACTTTGTCAAAGGT 59.346 37.500 25.38 22.58 42.82 3.50
428 430 5.130311 AGGCCATTTAACTTTGTCAAAGGTT 59.870 36.000 25.38 18.87 42.82 3.50
429 431 5.820423 GGCCATTTAACTTTGTCAAAGGTTT 59.180 36.000 25.38 15.59 42.82 3.27
430 432 6.317642 GGCCATTTAACTTTGTCAAAGGTTTT 59.682 34.615 25.38 14.99 42.82 2.43
431 433 7.148154 GGCCATTTAACTTTGTCAAAGGTTTTT 60.148 33.333 25.38 14.69 42.82 1.94
459 461 6.976934 TCAAAAGCAATCTTAAAAGGGACT 57.023 33.333 0.00 0.00 32.94 3.85
461 463 5.984695 AAAGCAATCTTAAAAGGGACTCC 57.015 39.130 0.00 0.00 30.75 3.85
462 464 5.645201 AAAGCAATCTTAAAAGGGACTCCT 58.355 37.500 0.00 0.00 37.11 3.69
470 472 3.510531 AAAAGGGACTCCTGGAGTTTC 57.489 47.619 28.90 22.32 43.53 2.78
471 473 1.363246 AAGGGACTCCTGGAGTTTCC 58.637 55.000 28.90 28.50 43.53 3.13
474 476 0.906066 GGACTCCTGGAGTTTCCCTC 59.094 60.000 28.90 15.38 43.53 4.30
476 478 2.261729 GACTCCTGGAGTTTCCCTCTT 58.738 52.381 28.90 4.05 43.53 2.85
477 479 3.442076 GACTCCTGGAGTTTCCCTCTTA 58.558 50.000 28.90 0.00 43.53 2.10
478 480 4.034410 GACTCCTGGAGTTTCCCTCTTAT 58.966 47.826 28.90 2.73 43.53 1.73
480 482 2.505819 TCCTGGAGTTTCCCTCTTATGC 59.494 50.000 0.00 0.00 40.30 3.14
484 486 4.335416 TGGAGTTTCCCTCTTATGCAAAG 58.665 43.478 0.00 0.00 40.30 2.77
488 1093 6.153510 GGAGTTTCCCTCTTATGCAAAGAATT 59.846 38.462 10.97 0.00 40.30 2.17
489 1094 7.339466 GGAGTTTCCCTCTTATGCAAAGAATTA 59.661 37.037 10.97 0.44 40.30 1.40
494 1099 8.877864 TCCCTCTTATGCAAAGAATTAAGAAA 57.122 30.769 10.97 0.00 0.00 2.52
515 1642 6.833933 AGAAATTCATGTATTACAAGGACCCC 59.166 38.462 0.00 0.00 0.00 4.95
518 1645 5.367945 TCATGTATTACAAGGACCCCTTC 57.632 43.478 0.00 0.00 42.67 3.46
532 1659 4.341235 GGACCCCTTCCAAAATATACTTGC 59.659 45.833 0.00 0.00 45.10 4.01
535 1662 3.951680 CCCTTCCAAAATATACTTGCCGT 59.048 43.478 0.00 0.00 0.00 5.68
537 1664 5.591067 CCCTTCCAAAATATACTTGCCGTTA 59.409 40.000 0.00 0.00 0.00 3.18
538 1665 6.095720 CCCTTCCAAAATATACTTGCCGTTAA 59.904 38.462 0.00 0.00 0.00 2.01
539 1666 7.193595 CCTTCCAAAATATACTTGCCGTTAAG 58.806 38.462 0.00 0.00 0.00 1.85
541 1668 7.925043 TCCAAAATATACTTGCCGTTAAGAA 57.075 32.000 3.27 0.00 0.00 2.52
543 1670 8.455682 TCCAAAATATACTTGCCGTTAAGAAAG 58.544 33.333 3.27 0.00 0.00 2.62
553 1680 2.996621 CCGTTAAGAAAGGCAGTCTCAG 59.003 50.000 0.00 0.00 0.00 3.35
555 1682 3.923461 CGTTAAGAAAGGCAGTCTCAGAG 59.077 47.826 0.00 0.00 0.00 3.35
556 1683 4.249661 GTTAAGAAAGGCAGTCTCAGAGG 58.750 47.826 0.00 0.00 0.00 3.69
557 1684 0.612744 AGAAAGGCAGTCTCAGAGGC 59.387 55.000 0.00 0.00 0.00 4.70
558 1685 0.612744 GAAAGGCAGTCTCAGAGGCT 59.387 55.000 0.00 0.00 40.14 4.58
559 1686 0.612744 AAAGGCAGTCTCAGAGGCTC 59.387 55.000 6.34 6.34 37.15 4.70
563 1690 1.136110 GGCAGTCTCAGAGGCTCTAAC 59.864 57.143 18.26 15.16 0.00 2.34
564 1691 1.136110 GCAGTCTCAGAGGCTCTAACC 59.864 57.143 18.26 5.66 0.00 2.85
565 1692 2.451490 CAGTCTCAGAGGCTCTAACCA 58.549 52.381 18.26 0.57 0.00 3.67
566 1693 2.165437 CAGTCTCAGAGGCTCTAACCAC 59.835 54.545 18.26 11.31 0.00 4.16
567 1694 2.171840 GTCTCAGAGGCTCTAACCACA 58.828 52.381 18.26 0.00 0.00 4.17
568 1695 2.094442 GTCTCAGAGGCTCTAACCACAC 60.094 54.545 18.26 4.73 0.00 3.82
569 1696 1.205893 CTCAGAGGCTCTAACCACACC 59.794 57.143 18.26 0.00 0.00 4.16
570 1697 1.203187 TCAGAGGCTCTAACCACACCT 60.203 52.381 18.26 0.00 0.00 4.00
572 1699 2.039084 CAGAGGCTCTAACCACACCTTT 59.961 50.000 18.26 0.00 0.00 3.11
573 1700 2.303311 AGAGGCTCTAACCACACCTTTC 59.697 50.000 17.09 0.00 0.00 2.62
575 1702 2.039084 AGGCTCTAACCACACCTTTCTG 59.961 50.000 0.00 0.00 0.00 3.02
576 1703 2.224548 GGCTCTAACCACACCTTTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
578 1705 3.883489 GCTCTAACCACACCTTTCTGTTT 59.117 43.478 0.00 0.00 0.00 2.83
579 1706 5.061179 GCTCTAACCACACCTTTCTGTTTA 58.939 41.667 0.00 0.00 0.00 2.01
582 1709 7.504924 TCTAACCACACCTTTCTGTTTAATG 57.495 36.000 0.00 0.00 0.00 1.90
583 1710 7.284074 TCTAACCACACCTTTCTGTTTAATGA 58.716 34.615 0.00 0.00 0.00 2.57
584 1711 6.783708 AACCACACCTTTCTGTTTAATGAA 57.216 33.333 0.00 0.00 0.00 2.57
586 1713 7.176589 ACCACACCTTTCTGTTTAATGAAAA 57.823 32.000 0.00 0.00 32.69 2.29
587 1714 7.616313 ACCACACCTTTCTGTTTAATGAAAAA 58.384 30.769 0.00 0.00 32.69 1.94
613 1740 7.747888 ACATGTTCATAAATTTCATTCGACGA 58.252 30.769 0.00 0.00 0.00 4.20
615 1742 6.237790 TGTTCATAAATTTCATTCGACGACG 58.762 36.000 0.00 0.00 41.26 5.12
626 1753 1.705256 TCGACGACGAATCCAAAAGG 58.295 50.000 7.68 0.00 45.74 3.11
627 1754 1.270274 TCGACGACGAATCCAAAAGGA 59.730 47.619 7.68 0.00 45.74 3.36
628 1755 2.094390 TCGACGACGAATCCAAAAGGAT 60.094 45.455 7.68 0.00 45.74 3.24
629 1756 2.029244 CGACGACGAATCCAAAAGGATG 59.971 50.000 0.00 0.00 42.66 3.51
631 1758 1.737236 CGACGAATCCAAAAGGATGCA 59.263 47.619 3.53 0.00 0.00 3.96
632 1759 2.476185 CGACGAATCCAAAAGGATGCAC 60.476 50.000 3.53 0.00 0.00 4.57
633 1760 2.487762 GACGAATCCAAAAGGATGCACA 59.512 45.455 3.53 0.00 0.00 4.57
634 1761 2.228822 ACGAATCCAAAAGGATGCACAC 59.771 45.455 3.53 0.00 0.00 3.82
636 1763 3.671433 CGAATCCAAAAGGATGCACACAG 60.671 47.826 3.53 0.00 0.00 3.66
637 1764 1.619654 TCCAAAAGGATGCACACAGG 58.380 50.000 0.00 0.00 0.00 4.00
638 1765 1.133513 TCCAAAAGGATGCACACAGGT 60.134 47.619 0.00 0.00 0.00 4.00
639 1766 1.688197 CCAAAAGGATGCACACAGGTT 59.312 47.619 0.00 0.00 0.00 3.50
641 1768 1.238439 AAAGGATGCACACAGGTTCG 58.762 50.000 0.00 0.00 0.00 3.95
642 1769 0.606401 AAGGATGCACACAGGTTCGG 60.606 55.000 0.00 0.00 0.00 4.30
643 1770 1.302511 GGATGCACACAGGTTCGGT 60.303 57.895 0.00 0.00 0.00 4.69
644 1771 0.889186 GGATGCACACAGGTTCGGTT 60.889 55.000 0.00 0.00 0.00 4.44
645 1772 0.517316 GATGCACACAGGTTCGGTTC 59.483 55.000 0.00 0.00 0.00 3.62
646 1773 0.108585 ATGCACACAGGTTCGGTTCT 59.891 50.000 0.00 0.00 0.00 3.01
647 1774 0.813610 TGCACACAGGTTCGGTTCTG 60.814 55.000 0.00 0.00 37.07 3.02
648 1775 1.941812 CACACAGGTTCGGTTCTGC 59.058 57.895 0.00 0.00 34.57 4.26
649 1776 0.532862 CACACAGGTTCGGTTCTGCT 60.533 55.000 0.00 0.00 34.57 4.24
650 1777 1.045407 ACACAGGTTCGGTTCTGCTA 58.955 50.000 0.00 0.00 34.57 3.49
651 1778 1.414919 ACACAGGTTCGGTTCTGCTAA 59.585 47.619 0.00 0.00 34.57 3.09
652 1779 2.038557 ACACAGGTTCGGTTCTGCTAAT 59.961 45.455 0.00 0.00 34.57 1.73
653 1780 2.673368 CACAGGTTCGGTTCTGCTAATC 59.327 50.000 0.00 0.00 34.57 1.75
654 1781 2.301870 ACAGGTTCGGTTCTGCTAATCA 59.698 45.455 0.00 0.00 34.57 2.57
655 1782 2.932614 CAGGTTCGGTTCTGCTAATCAG 59.067 50.000 0.00 0.00 44.21 2.90
656 1783 2.567615 AGGTTCGGTTCTGCTAATCAGT 59.432 45.455 0.00 0.00 43.32 3.41
657 1784 3.008049 AGGTTCGGTTCTGCTAATCAGTT 59.992 43.478 0.00 0.00 43.32 3.16
658 1785 3.125316 GGTTCGGTTCTGCTAATCAGTTG 59.875 47.826 0.00 0.00 43.32 3.16
659 1786 3.953712 TCGGTTCTGCTAATCAGTTGA 57.046 42.857 0.00 0.00 43.32 3.18
660 1787 3.585862 TCGGTTCTGCTAATCAGTTGAC 58.414 45.455 0.00 0.00 43.32 3.18
661 1788 2.345641 CGGTTCTGCTAATCAGTTGACG 59.654 50.000 0.00 0.00 43.32 4.35
662 1789 2.673368 GGTTCTGCTAATCAGTTGACGG 59.327 50.000 0.00 0.00 43.32 4.79
663 1790 2.010145 TCTGCTAATCAGTTGACGGC 57.990 50.000 0.00 0.00 43.32 5.68
664 1791 0.647410 CTGCTAATCAGTTGACGGCG 59.353 55.000 4.80 4.80 38.02 6.46
665 1792 0.739462 TGCTAATCAGTTGACGGCGG 60.739 55.000 13.24 0.00 0.00 6.13
666 1793 2.006772 CTAATCAGTTGACGGCGGC 58.993 57.895 13.24 9.67 0.00 6.53
667 1794 1.429148 CTAATCAGTTGACGGCGGCC 61.429 60.000 11.74 9.54 0.00 6.13
741 1868 3.714078 TTCCGCTGCCTCCCCCTAT 62.714 63.158 0.00 0.00 0.00 2.57
763 1897 0.666577 GACCACCGTTTCGTCCTCTG 60.667 60.000 0.00 0.00 0.00 3.35
801 1935 3.997021 ACTCAAGCAATCTCAAAGTACCG 59.003 43.478 0.00 0.00 0.00 4.02
807 1941 0.818296 ATCTCAAAGTACCGCTCGCT 59.182 50.000 0.00 0.00 0.00 4.93
876 2014 1.108776 ACTCACTAATTCCGCGGCTA 58.891 50.000 23.51 11.78 0.00 3.93
988 2126 1.440476 CACCGAACCGTATCCTCCC 59.560 63.158 0.00 0.00 0.00 4.30
989 2127 1.041447 CACCGAACCGTATCCTCCCT 61.041 60.000 0.00 0.00 0.00 4.20
990 2128 0.325016 ACCGAACCGTATCCTCCCTT 60.325 55.000 0.00 0.00 0.00 3.95
993 2131 0.757512 GAACCGTATCCTCCCTTCCC 59.242 60.000 0.00 0.00 0.00 3.97
996 2134 0.832559 CCGTATCCTCCCTTCCCCTC 60.833 65.000 0.00 0.00 0.00 4.30
1000 2167 3.711782 CCTCCCTTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
1002 2169 3.707189 TCCCTTCCCCTCCCCTCC 61.707 72.222 0.00 0.00 0.00 4.30
1005 2172 3.711782 CTTCCCCTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
1047 2218 1.226547 GGCGAGAGAGAACAGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
1063 2239 4.198625 CGGAGCAGCAAAGAGAGG 57.801 61.111 0.00 0.00 0.00 3.69
1064 2240 2.105466 CGGAGCAGCAAAGAGAGGC 61.105 63.158 0.00 0.00 0.00 4.70
1065 2241 1.748500 GGAGCAGCAAAGAGAGGCC 60.749 63.158 0.00 0.00 0.00 5.19
1066 2242 2.046507 AGCAGCAAAGAGAGGCCG 60.047 61.111 0.00 0.00 0.00 6.13
1067 2243 2.359230 GCAGCAAAGAGAGGCCGT 60.359 61.111 0.00 0.00 0.00 5.68
1068 2244 1.079127 GCAGCAAAGAGAGGCCGTA 60.079 57.895 0.00 0.00 0.00 4.02
1069 2245 0.462759 GCAGCAAAGAGAGGCCGTAT 60.463 55.000 0.00 0.00 0.00 3.06
1070 2246 1.576356 CAGCAAAGAGAGGCCGTATC 58.424 55.000 0.00 0.00 0.00 2.24
1071 2247 1.137872 CAGCAAAGAGAGGCCGTATCT 59.862 52.381 0.00 0.00 0.00 1.98
1072 2248 1.137872 AGCAAAGAGAGGCCGTATCTG 59.862 52.381 7.99 0.00 0.00 2.90
1073 2249 1.808133 GCAAAGAGAGGCCGTATCTGG 60.808 57.143 7.99 5.62 0.00 3.86
1283 2459 1.812922 GACATCTGCCAGGTCAGCG 60.813 63.158 6.12 3.43 34.19 5.18
1327 2509 0.460987 GCCCCTGTCTGTCTCGATTG 60.461 60.000 0.00 0.00 0.00 2.67
1359 2541 1.017387 GCAATCGATGGGTTCCTGTC 58.983 55.000 0.00 0.00 0.00 3.51
1360 2542 1.407437 GCAATCGATGGGTTCCTGTCT 60.407 52.381 0.00 0.00 0.00 3.41
1362 2544 1.866015 ATCGATGGGTTCCTGTCTGA 58.134 50.000 0.00 0.00 0.00 3.27
1367 2549 2.940514 TGGGTTCCTGTCTGATCCTA 57.059 50.000 0.00 0.00 0.00 2.94
1376 2558 1.213182 TGTCTGATCCTAGAGAGGCGT 59.787 52.381 0.00 0.00 43.40 5.68
1382 2564 1.464734 TCCTAGAGAGGCGTTGTCTG 58.535 55.000 0.00 0.00 43.40 3.51
1389 2571 1.000955 AGAGGCGTTGTCTGATTTCGT 59.999 47.619 0.00 0.00 0.00 3.85
1435 2617 3.509967 TCAGTTTCGGATGTGAGCTCTTA 59.490 43.478 16.19 3.99 0.00 2.10
1484 2666 0.032017 TCCTCAGGGAGTTAGGGAGC 60.032 60.000 0.00 0.00 36.57 4.70
1501 2683 2.225467 GAGCCAGGGTTAAGATGATGC 58.775 52.381 0.00 0.00 0.00 3.91
1509 2691 5.700832 CAGGGTTAAGATGATGCGCTAAATA 59.299 40.000 9.73 0.00 0.00 1.40
1515 2697 8.930760 GTTAAGATGATGCGCTAAATAATCTCT 58.069 33.333 9.73 4.44 26.85 3.10
1522 2704 5.666462 TGCGCTAAATAATCTCTGTACCAA 58.334 37.500 9.73 0.00 0.00 3.67
1537 2719 0.752054 ACCAACCATGTTGTGCTTGG 59.248 50.000 6.25 1.59 45.33 3.61
1543 2725 0.110056 CATGTTGTGCTTGGCGTCTC 60.110 55.000 0.00 0.00 0.00 3.36
1548 2730 0.537143 TGTGCTTGGCGTCTCCATTT 60.537 50.000 0.00 0.00 46.04 2.32
1551 2733 0.171231 GCTTGGCGTCTCCATTTTCC 59.829 55.000 0.00 0.00 46.04 3.13
3692 5089 6.559042 CACATGAAGTGTCAGTTTGTTTTC 57.441 37.500 0.00 0.00 43.40 2.29
3699 5096 8.956426 TGAAGTGTCAGTTTGTTTTCTATCTTT 58.044 29.630 0.00 0.00 0.00 2.52
3700 5097 9.226345 GAAGTGTCAGTTTGTTTTCTATCTTTG 57.774 33.333 0.00 0.00 0.00 2.77
3701 5098 7.196331 AGTGTCAGTTTGTTTTCTATCTTTGC 58.804 34.615 0.00 0.00 0.00 3.68
3702 5099 6.417930 GTGTCAGTTTGTTTTCTATCTTTGCC 59.582 38.462 0.00 0.00 0.00 4.52
3703 5100 6.321181 TGTCAGTTTGTTTTCTATCTTTGCCT 59.679 34.615 0.00 0.00 0.00 4.75
3704 5101 7.500892 TGTCAGTTTGTTTTCTATCTTTGCCTA 59.499 33.333 0.00 0.00 0.00 3.93
3705 5102 8.349983 GTCAGTTTGTTTTCTATCTTTGCCTAA 58.650 33.333 0.00 0.00 0.00 2.69
3706 5103 8.908903 TCAGTTTGTTTTCTATCTTTGCCTAAA 58.091 29.630 0.00 0.00 0.00 1.85
3707 5104 9.696917 CAGTTTGTTTTCTATCTTTGCCTAAAT 57.303 29.630 0.00 0.00 0.00 1.40
3711 5108 9.474920 TTGTTTTCTATCTTTGCCTAAATTGTG 57.525 29.630 0.00 0.00 0.00 3.33
3712 5109 8.087750 TGTTTTCTATCTTTGCCTAAATTGTGG 58.912 33.333 0.00 0.00 0.00 4.17
3727 5124 5.637006 AATTGTGGCGTCTAAGCATTTAA 57.363 34.783 0.00 0.00 39.27 1.52
3749 5146 5.779241 AACTGATGTTCCCCTATGAAAGA 57.221 39.130 0.00 0.00 0.00 2.52
3763 5160 7.508296 CCCCTATGAAAGAAAATCCAGATCAAT 59.492 37.037 0.00 0.00 0.00 2.57
6920 8965 7.586747 TGTAAAGTCCAATTACATTCGTTTCC 58.413 34.615 0.00 0.00 38.10 3.13
6921 8966 5.638596 AAGTCCAATTACATTCGTTTCCC 57.361 39.130 0.00 0.00 0.00 3.97
6922 8967 4.918588 AGTCCAATTACATTCGTTTCCCT 58.081 39.130 0.00 0.00 0.00 4.20
6923 8968 6.057321 AGTCCAATTACATTCGTTTCCCTA 57.943 37.500 0.00 0.00 0.00 3.53
6924 8969 6.659824 AGTCCAATTACATTCGTTTCCCTAT 58.340 36.000 0.00 0.00 0.00 2.57
6925 8970 7.116736 AGTCCAATTACATTCGTTTCCCTATT 58.883 34.615 0.00 0.00 0.00 1.73
6926 8971 7.614192 AGTCCAATTACATTCGTTTCCCTATTT 59.386 33.333 0.00 0.00 0.00 1.40
6927 8972 7.700656 GTCCAATTACATTCGTTTCCCTATTTG 59.299 37.037 0.00 0.00 0.00 2.32
6928 8973 7.394923 TCCAATTACATTCGTTTCCCTATTTGT 59.605 33.333 0.00 0.00 0.00 2.83
6929 8974 8.032451 CCAATTACATTCGTTTCCCTATTTGTT 58.968 33.333 0.00 0.00 0.00 2.83
6930 8975 9.418045 CAATTACATTCGTTTCCCTATTTGTTT 57.582 29.630 0.00 0.00 0.00 2.83
6933 8978 7.989416 ACATTCGTTTCCCTATTTGTTTAGA 57.011 32.000 0.00 0.00 0.00 2.10
6934 8979 8.575649 ACATTCGTTTCCCTATTTGTTTAGAT 57.424 30.769 0.00 0.00 0.00 1.98
6935 8980 8.458843 ACATTCGTTTCCCTATTTGTTTAGATG 58.541 33.333 0.00 0.00 0.00 2.90
6936 8981 7.989416 TTCGTTTCCCTATTTGTTTAGATGT 57.011 32.000 0.00 0.00 0.00 3.06
6937 8982 9.675464 ATTCGTTTCCCTATTTGTTTAGATGTA 57.325 29.630 0.00 0.00 0.00 2.29
6960 9005 7.606456 TGTAAAGTCCAATTACATTCCTCTGAC 59.394 37.037 0.00 0.00 38.10 3.51
6982 9027 4.022762 ACATAGAGTGCCGCTATTAGACTG 60.023 45.833 0.00 0.00 0.00 3.51
7024 9069 8.486210 AGAGATGTCCACTTAGTATTTATGCAA 58.514 33.333 0.00 0.00 0.00 4.08
7025 9070 9.109393 GAGATGTCCACTTAGTATTTATGCAAA 57.891 33.333 0.00 0.00 0.00 3.68
7026 9071 9.461312 AGATGTCCACTTAGTATTTATGCAAAA 57.539 29.630 0.00 0.00 0.00 2.44
7117 9162 7.636150 ATTTGTCCAGTTCAGAGGATATTTG 57.364 36.000 0.00 0.00 36.11 2.32
7141 9186 1.333619 GGATGGTGTGTGTTGTGTGAC 59.666 52.381 0.00 0.00 0.00 3.67
7156 9201 5.554437 TGTGTGACTATGGGTTGAGTTAA 57.446 39.130 0.00 0.00 0.00 2.01
7196 9241 4.837972 AGTTTGAGGTCTAATTGCTCTCC 58.162 43.478 0.00 0.00 0.00 3.71
7314 9359 0.693049 AGTTGATTTGGGCGGTCTCT 59.307 50.000 0.00 0.00 0.00 3.10
7318 9363 1.087501 GATTTGGGCGGTCTCTTCAC 58.912 55.000 0.00 0.00 0.00 3.18
7360 9405 1.526887 CAACACGAAGCACTACCACAG 59.473 52.381 0.00 0.00 0.00 3.66
7370 9415 2.419990 GCACTACCACAGGCATCATGTA 60.420 50.000 0.00 0.00 0.00 2.29
7372 9417 4.060900 CACTACCACAGGCATCATGTATC 58.939 47.826 0.00 0.00 0.00 2.24
7373 9418 3.969976 ACTACCACAGGCATCATGTATCT 59.030 43.478 0.00 0.00 0.00 1.98
7394 9439 6.850752 TCTTTGAAACAAACCTTCCTCTTT 57.149 33.333 0.00 0.00 0.00 2.52
7407 9452 4.532521 CCTTCCTCTTTTTCTAGACCAGGA 59.467 45.833 0.00 0.00 0.00 3.86
7431 9476 7.332182 GGAGTTGATTTGTTCAGGTAGAAGTAG 59.668 40.741 0.00 0.00 36.78 2.57
7432 9477 7.963532 AGTTGATTTGTTCAGGTAGAAGTAGA 58.036 34.615 0.00 0.00 36.78 2.59
7433 9478 8.429641 AGTTGATTTGTTCAGGTAGAAGTAGAA 58.570 33.333 0.00 0.00 36.78 2.10
7434 9479 8.496751 GTTGATTTGTTCAGGTAGAAGTAGAAC 58.503 37.037 0.00 0.00 36.78 3.01
7435 9480 7.159372 TGATTTGTTCAGGTAGAAGTAGAACC 58.841 38.462 0.00 0.00 38.17 3.62
7436 9481 6.488769 TTTGTTCAGGTAGAAGTAGAACCA 57.511 37.500 0.00 0.00 38.17 3.67
7448 9493 7.537596 AGAAGTAGAACCATGATATCCTCAG 57.462 40.000 0.00 0.00 37.28 3.35
7457 9502 9.956640 GAACCATGATATCCTCAGAATTAAGAT 57.043 33.333 0.00 0.00 37.28 2.40
7458 9503 9.956640 AACCATGATATCCTCAGAATTAAGATC 57.043 33.333 0.00 0.00 37.28 2.75
7459 9504 8.547173 ACCATGATATCCTCAGAATTAAGATCC 58.453 37.037 0.00 0.00 37.28 3.36
7550 9597 8.288689 AGTTAGAACTTGGTATTGTTGTGTTT 57.711 30.769 0.00 0.00 35.21 2.83
7595 9642 6.007936 TGAAATATTCACGGTTTTCCACTG 57.992 37.500 0.00 0.00 35.59 3.66
7619 9666 5.238583 AGGTAAAGAGAAGACGTTTCATGG 58.761 41.667 11.33 0.00 0.00 3.66
7633 9680 9.396022 AGACGTTTCATGGATCTATTTAATGTT 57.604 29.630 8.34 0.46 0.00 2.71
7646 9693 8.165239 TCTATTTAATGTTTTGAGCAGTGTGT 57.835 30.769 0.00 0.00 0.00 3.72
7648 9695 5.574891 TTAATGTTTTGAGCAGTGTGTGT 57.425 34.783 0.00 0.00 0.00 3.72
7656 9703 1.949525 GAGCAGTGTGTGTGGTTTGAT 59.050 47.619 0.00 0.00 0.00 2.57
7657 9704 1.949525 AGCAGTGTGTGTGGTTTGATC 59.050 47.619 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.586079 CAGATGTGGGCCGCGTAG 60.586 66.667 12.68 4.26 0.00 3.51
3 4 4.155733 CCAGATGTGGGCCGCGTA 62.156 66.667 12.68 0.00 40.67 4.42
11 12 0.321919 CAGTGGTGTCCCAGATGTGG 60.322 60.000 0.75 0.75 42.94 4.17
12 13 0.321919 CCAGTGGTGTCCCAGATGTG 60.322 60.000 0.00 0.00 42.94 3.21
13 14 0.473694 TCCAGTGGTGTCCCAGATGT 60.474 55.000 9.54 0.00 42.94 3.06
14 15 0.036010 GTCCAGTGGTGTCCCAGATG 60.036 60.000 9.54 0.00 42.94 2.90
15 16 0.473694 TGTCCAGTGGTGTCCCAGAT 60.474 55.000 9.54 0.00 42.94 2.90
16 17 0.473694 ATGTCCAGTGGTGTCCCAGA 60.474 55.000 9.54 0.00 42.94 3.86
17 18 0.321919 CATGTCCAGTGGTGTCCCAG 60.322 60.000 9.54 0.00 42.94 4.45
18 19 1.059584 ACATGTCCAGTGGTGTCCCA 61.060 55.000 9.54 0.13 38.87 4.37
19 20 0.110486 AACATGTCCAGTGGTGTCCC 59.890 55.000 9.54 0.00 0.00 4.46
20 21 2.851263 TAACATGTCCAGTGGTGTCC 57.149 50.000 9.54 0.00 0.00 4.02
21 22 4.002906 TCTTAACATGTCCAGTGGTGTC 57.997 45.455 9.54 2.09 0.00 3.67
22 23 4.102524 TCTTCTTAACATGTCCAGTGGTGT 59.897 41.667 9.54 3.30 0.00 4.16
23 24 4.641396 TCTTCTTAACATGTCCAGTGGTG 58.359 43.478 9.54 2.57 0.00 4.17
24 25 4.974645 TCTTCTTAACATGTCCAGTGGT 57.025 40.909 9.54 0.00 0.00 4.16
25 26 4.154918 GCTTCTTCTTAACATGTCCAGTGG 59.845 45.833 1.40 1.40 0.00 4.00
26 27 4.143030 CGCTTCTTCTTAACATGTCCAGTG 60.143 45.833 0.00 0.00 0.00 3.66
27 28 3.997021 CGCTTCTTCTTAACATGTCCAGT 59.003 43.478 0.00 0.00 0.00 4.00
28 29 4.245660 TCGCTTCTTCTTAACATGTCCAG 58.754 43.478 0.00 0.00 0.00 3.86
29 30 4.265904 TCGCTTCTTCTTAACATGTCCA 57.734 40.909 0.00 0.00 0.00 4.02
30 31 4.142881 GGTTCGCTTCTTCTTAACATGTCC 60.143 45.833 0.00 0.00 0.00 4.02
31 32 4.142881 GGGTTCGCTTCTTCTTAACATGTC 60.143 45.833 0.00 0.00 0.00 3.06
32 33 3.751698 GGGTTCGCTTCTTCTTAACATGT 59.248 43.478 0.00 0.00 0.00 3.21
33 34 3.127030 GGGGTTCGCTTCTTCTTAACATG 59.873 47.826 0.00 0.00 0.00 3.21
34 35 3.009143 AGGGGTTCGCTTCTTCTTAACAT 59.991 43.478 0.00 0.00 0.00 2.71
35 36 2.370849 AGGGGTTCGCTTCTTCTTAACA 59.629 45.455 0.00 0.00 0.00 2.41
36 37 3.001414 GAGGGGTTCGCTTCTTCTTAAC 58.999 50.000 0.00 0.00 0.00 2.01
37 38 2.027469 GGAGGGGTTCGCTTCTTCTTAA 60.027 50.000 0.00 0.00 0.00 1.85
38 39 1.553704 GGAGGGGTTCGCTTCTTCTTA 59.446 52.381 0.00 0.00 0.00 2.10
39 40 0.325272 GGAGGGGTTCGCTTCTTCTT 59.675 55.000 0.00 0.00 0.00 2.52
40 41 0.545548 AGGAGGGGTTCGCTTCTTCT 60.546 55.000 0.00 0.00 26.96 2.85
41 42 0.391793 CAGGAGGGGTTCGCTTCTTC 60.392 60.000 0.00 0.00 29.32 2.87
42 43 1.679898 CAGGAGGGGTTCGCTTCTT 59.320 57.895 0.00 0.00 29.32 2.52
43 44 2.960688 GCAGGAGGGGTTCGCTTCT 61.961 63.158 0.00 0.00 32.15 2.85
44 45 2.436824 GCAGGAGGGGTTCGCTTC 60.437 66.667 0.00 0.00 0.00 3.86
45 46 4.394712 CGCAGGAGGGGTTCGCTT 62.395 66.667 0.00 0.00 0.00 4.68
48 49 3.649277 CTCACGCAGGAGGGGTTCG 62.649 68.421 0.00 0.00 41.32 3.95
49 50 2.266055 CTCACGCAGGAGGGGTTC 59.734 66.667 0.00 0.00 41.32 3.62
58 59 3.610791 TTCTCGTCGCCTCACGCAG 62.611 63.158 0.00 0.00 43.23 5.18
59 60 3.202216 TTTCTCGTCGCCTCACGCA 62.202 57.895 0.00 0.00 43.23 5.24
60 61 2.430244 TTTCTCGTCGCCTCACGC 60.430 61.111 0.00 0.00 43.23 5.34
61 62 2.426183 CGTTTCTCGTCGCCTCACG 61.426 63.158 0.00 0.00 45.62 4.35
62 63 1.081641 TCGTTTCTCGTCGCCTCAC 60.082 57.895 0.00 0.00 40.80 3.51
63 64 1.081641 GTCGTTTCTCGTCGCCTCA 60.082 57.895 0.00 0.00 40.80 3.86
64 65 0.445436 TAGTCGTTTCTCGTCGCCTC 59.555 55.000 0.00 0.00 40.80 4.70
65 66 0.447011 CTAGTCGTTTCTCGTCGCCT 59.553 55.000 0.00 0.00 40.80 5.52
66 67 0.522915 CCTAGTCGTTTCTCGTCGCC 60.523 60.000 0.00 0.00 40.80 5.54
67 68 1.132780 GCCTAGTCGTTTCTCGTCGC 61.133 60.000 0.00 0.00 40.80 5.19
68 69 0.447011 AGCCTAGTCGTTTCTCGTCG 59.553 55.000 0.00 0.00 40.80 5.12
69 70 1.199558 ACAGCCTAGTCGTTTCTCGTC 59.800 52.381 0.00 0.00 40.80 4.20
70 71 1.245732 ACAGCCTAGTCGTTTCTCGT 58.754 50.000 0.00 0.00 40.80 4.18
71 72 2.223294 CCTACAGCCTAGTCGTTTCTCG 60.223 54.545 0.00 0.00 41.41 4.04
72 73 2.479901 GCCTACAGCCTAGTCGTTTCTC 60.480 54.545 0.00 0.00 34.35 2.87
73 74 1.477295 GCCTACAGCCTAGTCGTTTCT 59.523 52.381 0.00 0.00 34.35 2.52
74 75 1.477295 AGCCTACAGCCTAGTCGTTTC 59.523 52.381 0.00 0.00 45.47 2.78
75 76 1.204941 CAGCCTACAGCCTAGTCGTTT 59.795 52.381 0.00 0.00 45.47 3.60
76 77 0.818296 CAGCCTACAGCCTAGTCGTT 59.182 55.000 0.00 0.00 45.47 3.85
77 78 1.668101 GCAGCCTACAGCCTAGTCGT 61.668 60.000 0.00 0.00 45.47 4.34
78 79 1.066587 GCAGCCTACAGCCTAGTCG 59.933 63.158 0.00 0.00 45.47 4.18
79 80 1.066587 CGCAGCCTACAGCCTAGTC 59.933 63.158 0.00 0.00 45.47 2.59
80 81 2.427245 CCGCAGCCTACAGCCTAGT 61.427 63.158 0.00 0.00 45.47 2.57
81 82 2.419198 CCGCAGCCTACAGCCTAG 59.581 66.667 0.00 0.00 45.47 3.02
82 83 3.849951 GCCGCAGCCTACAGCCTA 61.850 66.667 0.00 0.00 45.47 3.93
85 86 4.154347 AGAGCCGCAGCCTACAGC 62.154 66.667 0.00 0.00 41.25 4.40
86 87 2.105930 GAGAGCCGCAGCCTACAG 59.894 66.667 0.00 0.00 41.25 2.74
87 88 3.461773 GGAGAGCCGCAGCCTACA 61.462 66.667 0.00 0.00 41.25 2.74
88 89 3.145422 GAGGAGAGCCGCAGCCTAC 62.145 68.421 0.00 0.00 41.25 3.18
89 90 2.835431 GAGGAGAGCCGCAGCCTA 60.835 66.667 0.00 0.00 41.25 3.93
92 93 4.527583 CAGGAGGAGAGCCGCAGC 62.528 72.222 0.00 0.00 39.96 5.25
93 94 1.684386 ATTCAGGAGGAGAGCCGCAG 61.684 60.000 0.00 0.00 39.96 5.18
94 95 1.680522 GATTCAGGAGGAGAGCCGCA 61.681 60.000 0.00 0.00 39.96 5.69
95 96 1.068921 GATTCAGGAGGAGAGCCGC 59.931 63.158 0.00 0.00 39.96 6.53
96 97 1.745264 GGATTCAGGAGGAGAGCCG 59.255 63.158 0.00 0.00 39.96 5.52
97 98 1.414866 GGGGATTCAGGAGGAGAGCC 61.415 65.000 0.00 0.00 0.00 4.70
98 99 0.399806 AGGGGATTCAGGAGGAGAGC 60.400 60.000 0.00 0.00 0.00 4.09
99 100 2.188818 AAGGGGATTCAGGAGGAGAG 57.811 55.000 0.00 0.00 0.00 3.20
100 101 2.046447 AGAAAGGGGATTCAGGAGGAGA 59.954 50.000 0.00 0.00 0.00 3.71
101 102 2.486716 AGAAAGGGGATTCAGGAGGAG 58.513 52.381 0.00 0.00 0.00 3.69
102 103 2.668850 AGAAAGGGGATTCAGGAGGA 57.331 50.000 0.00 0.00 0.00 3.71
103 104 2.849318 AGAAGAAAGGGGATTCAGGAGG 59.151 50.000 0.00 0.00 0.00 4.30
104 105 3.118075 GGAGAAGAAAGGGGATTCAGGAG 60.118 52.174 0.00 0.00 0.00 3.69
105 106 2.846827 GGAGAAGAAAGGGGATTCAGGA 59.153 50.000 0.00 0.00 0.00 3.86
106 107 2.849318 AGGAGAAGAAAGGGGATTCAGG 59.151 50.000 0.00 0.00 0.00 3.86
107 108 3.265479 ACAGGAGAAGAAAGGGGATTCAG 59.735 47.826 0.00 0.00 0.00 3.02
108 109 3.009473 CACAGGAGAAGAAAGGGGATTCA 59.991 47.826 0.00 0.00 0.00 2.57
109 110 3.615155 CACAGGAGAAGAAAGGGGATTC 58.385 50.000 0.00 0.00 0.00 2.52
110 111 2.310052 CCACAGGAGAAGAAAGGGGATT 59.690 50.000 0.00 0.00 0.00 3.01
111 112 1.918957 CCACAGGAGAAGAAAGGGGAT 59.081 52.381 0.00 0.00 0.00 3.85
112 113 1.132527 TCCACAGGAGAAGAAAGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
113 114 1.362224 TCCACAGGAGAAGAAAGGGG 58.638 55.000 0.00 0.00 0.00 4.79
114 115 2.553247 GGTTCCACAGGAGAAGAAAGGG 60.553 54.545 0.00 0.00 31.21 3.95
115 116 2.553247 GGGTTCCACAGGAGAAGAAAGG 60.553 54.545 0.00 0.00 31.21 3.11
116 117 2.373502 AGGGTTCCACAGGAGAAGAAAG 59.626 50.000 0.00 0.00 31.21 2.62
117 118 2.418669 AGGGTTCCACAGGAGAAGAAA 58.581 47.619 0.00 0.00 31.21 2.52
118 119 2.118403 AGGGTTCCACAGGAGAAGAA 57.882 50.000 0.00 0.00 31.21 2.52
119 120 2.382305 TCTAGGGTTCCACAGGAGAAGA 59.618 50.000 0.00 0.00 31.21 2.87
120 121 2.821437 TCTAGGGTTCCACAGGAGAAG 58.179 52.381 0.00 0.00 31.21 2.85
121 122 3.269592 TTCTAGGGTTCCACAGGAGAA 57.730 47.619 0.00 0.00 31.21 2.87
122 123 3.491766 ATTCTAGGGTTCCACAGGAGA 57.508 47.619 0.00 0.00 31.21 3.71
123 124 3.777522 AGAATTCTAGGGTTCCACAGGAG 59.222 47.826 6.06 0.00 31.21 3.69
124 125 3.803340 AGAATTCTAGGGTTCCACAGGA 58.197 45.455 6.06 0.00 0.00 3.86
125 126 5.366768 TGATAGAATTCTAGGGTTCCACAGG 59.633 44.000 19.51 0.00 0.00 4.00
126 127 6.325028 TCTGATAGAATTCTAGGGTTCCACAG 59.675 42.308 19.51 15.55 0.00 3.66
127 128 6.202331 TCTGATAGAATTCTAGGGTTCCACA 58.798 40.000 19.51 8.83 0.00 4.17
128 129 6.732896 TCTGATAGAATTCTAGGGTTCCAC 57.267 41.667 19.51 5.46 0.00 4.02
129 130 7.348274 ACAATCTGATAGAATTCTAGGGTTCCA 59.652 37.037 19.51 9.66 0.00 3.53
130 131 7.659390 CACAATCTGATAGAATTCTAGGGTTCC 59.341 40.741 19.51 6.20 0.00 3.62
131 132 8.424918 TCACAATCTGATAGAATTCTAGGGTTC 58.575 37.037 19.51 12.72 0.00 3.62
132 133 8.207545 GTCACAATCTGATAGAATTCTAGGGTT 58.792 37.037 19.51 11.84 0.00 4.11
133 134 7.345653 TGTCACAATCTGATAGAATTCTAGGGT 59.654 37.037 19.51 4.17 0.00 4.34
134 135 7.730084 TGTCACAATCTGATAGAATTCTAGGG 58.270 38.462 19.51 11.98 0.00 3.53
135 136 9.421806 GATGTCACAATCTGATAGAATTCTAGG 57.578 37.037 19.51 12.28 0.00 3.02
138 139 9.979578 GTAGATGTCACAATCTGATAGAATTCT 57.020 33.333 13.56 13.56 37.48 2.40
139 140 9.979578 AGTAGATGTCACAATCTGATAGAATTC 57.020 33.333 0.00 0.00 37.48 2.17
141 142 9.761504 CAAGTAGATGTCACAATCTGATAGAAT 57.238 33.333 0.00 0.00 37.48 2.40
142 143 8.753133 ACAAGTAGATGTCACAATCTGATAGAA 58.247 33.333 0.00 0.00 37.48 2.10
143 144 8.298729 ACAAGTAGATGTCACAATCTGATAGA 57.701 34.615 0.00 0.00 37.48 1.98
146 147 8.147058 GGATACAAGTAGATGTCACAATCTGAT 58.853 37.037 0.00 0.00 37.48 2.90
147 148 7.492524 GGATACAAGTAGATGTCACAATCTGA 58.507 38.462 0.00 0.00 37.48 3.27
148 149 7.706281 GGATACAAGTAGATGTCACAATCTG 57.294 40.000 0.00 0.00 37.48 2.90
165 166 9.100658 CCGGTAGGGATAATTCACTGGATACAA 62.101 44.444 0.00 0.00 43.53 2.41
166 167 7.704659 CCGGTAGGGATAATTCACTGGATACA 61.705 46.154 0.00 0.00 42.07 2.29
167 168 5.337330 CCGGTAGGGATAATTCACTGGATAC 60.337 48.000 0.00 0.00 35.94 2.24
168 169 4.775780 CCGGTAGGGATAATTCACTGGATA 59.224 45.833 0.00 0.00 35.94 2.59
169 170 3.583086 CCGGTAGGGATAATTCACTGGAT 59.417 47.826 0.00 0.00 35.94 3.41
170 171 2.969950 CCGGTAGGGATAATTCACTGGA 59.030 50.000 0.00 0.00 35.94 3.86
171 172 3.402628 CCGGTAGGGATAATTCACTGG 57.597 52.381 0.00 0.00 35.94 4.00
184 185 1.140375 GTGTTACGCTCCCGGTAGG 59.860 63.158 0.00 0.00 39.22 3.18
185 186 0.458669 ATGTGTTACGCTCCCGGTAG 59.541 55.000 0.00 0.00 39.22 3.18
186 187 0.896923 AATGTGTTACGCTCCCGGTA 59.103 50.000 0.00 0.00 39.22 4.02
187 188 0.035739 AAATGTGTTACGCTCCCGGT 59.964 50.000 0.00 0.00 39.22 5.28
188 189 0.446222 CAAATGTGTTACGCTCCCGG 59.554 55.000 0.00 0.00 39.22 5.73
189 190 1.434555 TCAAATGTGTTACGCTCCCG 58.565 50.000 0.00 0.00 41.14 5.14
190 191 2.812011 AGTTCAAATGTGTTACGCTCCC 59.188 45.455 0.00 0.00 0.00 4.30
191 192 4.483476 AAGTTCAAATGTGTTACGCTCC 57.517 40.909 0.00 0.00 0.00 4.70
192 193 4.675114 CCAAAGTTCAAATGTGTTACGCTC 59.325 41.667 0.00 0.00 0.00 5.03
193 194 4.097286 ACCAAAGTTCAAATGTGTTACGCT 59.903 37.500 0.00 0.00 0.00 5.07
194 195 4.206200 CACCAAAGTTCAAATGTGTTACGC 59.794 41.667 0.00 0.00 0.00 4.42
195 196 4.737765 CCACCAAAGTTCAAATGTGTTACG 59.262 41.667 0.00 0.00 0.00 3.18
196 197 5.746721 GTCCACCAAAGTTCAAATGTGTTAC 59.253 40.000 0.00 0.00 0.00 2.50
197 198 5.654650 AGTCCACCAAAGTTCAAATGTGTTA 59.345 36.000 0.00 0.00 0.00 2.41
198 199 4.466015 AGTCCACCAAAGTTCAAATGTGTT 59.534 37.500 0.00 0.00 0.00 3.32
199 200 4.023291 AGTCCACCAAAGTTCAAATGTGT 58.977 39.130 0.00 0.00 0.00 3.72
200 201 4.362279 CAGTCCACCAAAGTTCAAATGTG 58.638 43.478 0.00 0.00 0.00 3.21
201 202 3.384467 CCAGTCCACCAAAGTTCAAATGT 59.616 43.478 0.00 0.00 0.00 2.71
202 203 3.636300 TCCAGTCCACCAAAGTTCAAATG 59.364 43.478 0.00 0.00 0.00 2.32
203 204 3.909732 TCCAGTCCACCAAAGTTCAAAT 58.090 40.909 0.00 0.00 0.00 2.32
204 205 3.374042 TCCAGTCCACCAAAGTTCAAA 57.626 42.857 0.00 0.00 0.00 2.69
205 206 3.374042 TTCCAGTCCACCAAAGTTCAA 57.626 42.857 0.00 0.00 0.00 2.69
206 207 3.374042 TTTCCAGTCCACCAAAGTTCA 57.626 42.857 0.00 0.00 0.00 3.18
207 208 4.217767 GGTATTTCCAGTCCACCAAAGTTC 59.782 45.833 0.00 0.00 35.97 3.01
208 209 4.149598 GGTATTTCCAGTCCACCAAAGTT 58.850 43.478 0.00 0.00 35.97 2.66
209 210 3.139397 TGGTATTTCCAGTCCACCAAAGT 59.861 43.478 0.00 0.00 41.93 2.66
210 211 3.761897 TGGTATTTCCAGTCCACCAAAG 58.238 45.455 0.00 0.00 41.93 2.77
211 212 3.139397 AGTGGTATTTCCAGTCCACCAAA 59.861 43.478 9.17 0.00 45.98 3.28
212 213 2.714250 AGTGGTATTTCCAGTCCACCAA 59.286 45.455 9.17 0.00 45.98 3.67
213 214 2.039746 CAGTGGTATTTCCAGTCCACCA 59.960 50.000 9.17 0.00 45.98 4.17
214 215 2.039879 ACAGTGGTATTTCCAGTCCACC 59.960 50.000 9.17 0.00 45.98 4.61
215 216 3.335579 GACAGTGGTATTTCCAGTCCAC 58.664 50.000 5.21 5.21 45.98 4.02
216 217 3.695830 GACAGTGGTATTTCCAGTCCA 57.304 47.619 0.00 0.00 45.98 4.02
217 218 2.987232 GGACAGTGGTATTTCCAGTCC 58.013 52.381 8.72 8.72 45.98 3.85
218 219 3.369576 GGAGGACAGTGGTATTTCCAGTC 60.370 52.174 0.00 0.00 45.98 3.51
221 222 2.915869 AGGAGGACAGTGGTATTTCCA 58.084 47.619 0.00 0.00 45.01 3.53
222 223 4.470304 AGTTAGGAGGACAGTGGTATTTCC 59.530 45.833 0.00 0.00 0.00 3.13
223 224 5.678955 AGTTAGGAGGACAGTGGTATTTC 57.321 43.478 0.00 0.00 0.00 2.17
224 225 6.326843 GGATAGTTAGGAGGACAGTGGTATTT 59.673 42.308 0.00 0.00 0.00 1.40
225 226 5.839606 GGATAGTTAGGAGGACAGTGGTATT 59.160 44.000 0.00 0.00 0.00 1.89
245 246 2.092968 GCAGGGTGTCTGTGATTGGATA 60.093 50.000 0.00 0.00 45.08 2.59
252 253 1.053835 TTGAGGCAGGGTGTCTGTGA 61.054 55.000 0.00 0.00 45.08 3.58
254 255 1.757306 CTTGAGGCAGGGTGTCTGT 59.243 57.895 0.00 0.00 45.08 3.41
259 260 1.975407 CAAGGCTTGAGGCAGGGTG 60.975 63.158 22.64 0.00 44.01 4.61
260 261 1.504275 ATCAAGGCTTGAGGCAGGGT 61.504 55.000 31.17 13.07 43.98 4.34
271 273 6.360370 TCTACTTTAGAACACATCAAGGCT 57.640 37.500 0.00 0.00 0.00 4.58
308 310 6.756542 GCAGGAAAGTTGTTGTCAAAGTTAAT 59.243 34.615 0.00 0.00 35.20 1.40
315 317 2.426738 CTGGCAGGAAAGTTGTTGTCAA 59.573 45.455 6.61 0.00 0.00 3.18
318 320 2.435372 TCTGGCAGGAAAGTTGTTGT 57.565 45.000 15.73 0.00 0.00 3.32
319 321 3.799281 TTTCTGGCAGGAAAGTTGTTG 57.201 42.857 15.73 0.00 32.34 3.33
320 322 5.140454 ACTATTTCTGGCAGGAAAGTTGTT 58.860 37.500 13.19 0.00 38.38 2.83
331 333 5.951148 TGGATCATGAAAACTATTTCTGGCA 59.049 36.000 0.00 0.00 44.32 4.92
345 347 9.373603 CTGCTAAATGAAAAATTGGATCATGAA 57.626 29.630 0.00 0.00 34.21 2.57
383 385 9.154264 TGGCCTTTCCTTCTTCAAACTTTGAAA 62.154 37.037 16.03 4.03 41.38 2.69
384 386 5.395214 GGCCTTTCCTTCTTCAAACTTTGAA 60.395 40.000 14.79 14.79 46.68 2.69
385 387 4.099419 GGCCTTTCCTTCTTCAAACTTTGA 59.901 41.667 0.00 0.00 38.04 2.69
386 388 4.141959 TGGCCTTTCCTTCTTCAAACTTTG 60.142 41.667 3.32 0.00 35.26 2.77
387 389 4.030216 TGGCCTTTCCTTCTTCAAACTTT 58.970 39.130 3.32 0.00 35.26 2.66
388 390 3.642141 TGGCCTTTCCTTCTTCAAACTT 58.358 40.909 3.32 0.00 35.26 2.66
389 391 3.312736 TGGCCTTTCCTTCTTCAAACT 57.687 42.857 3.32 0.00 35.26 2.66
390 392 4.607293 AATGGCCTTTCCTTCTTCAAAC 57.393 40.909 3.32 0.00 35.26 2.93
394 396 5.984695 AGTTAAATGGCCTTTCCTTCTTC 57.015 39.130 3.32 0.00 35.26 2.87
395 397 6.099701 ACAAAGTTAAATGGCCTTTCCTTCTT 59.900 34.615 3.32 4.99 35.26 2.52
436 438 6.015434 GGAGTCCCTTTTAAGATTGCTTTTGA 60.015 38.462 0.00 0.00 35.56 2.69
442 444 3.696548 CCAGGAGTCCCTTTTAAGATTGC 59.303 47.826 5.25 0.00 42.02 3.56
454 456 0.547954 AGGGAAACTCCAGGAGTCCC 60.548 60.000 28.86 28.86 42.59 4.46
488 1093 9.403583 GGGTCCTTGTAATACATGAATTTCTTA 57.596 33.333 0.00 0.00 0.00 2.10
489 1094 7.342026 GGGGTCCTTGTAATACATGAATTTCTT 59.658 37.037 0.00 0.00 0.00 2.52
494 1099 5.994416 AGGGGTCCTTGTAATACATGAAT 57.006 39.130 0.00 0.00 0.00 2.57
496 1101 4.165372 GGAAGGGGTCCTTGTAATACATGA 59.835 45.833 0.00 0.00 44.82 3.07
501 1106 5.602291 TTTTGGAAGGGGTCCTTGTAATA 57.398 39.130 3.67 0.00 44.82 0.98
510 1115 4.341235 GGCAAGTATATTTTGGAAGGGGTC 59.659 45.833 0.00 0.00 0.00 4.46
511 1116 4.286707 GGCAAGTATATTTTGGAAGGGGT 58.713 43.478 0.00 0.00 0.00 4.95
512 1117 3.317993 CGGCAAGTATATTTTGGAAGGGG 59.682 47.826 0.00 0.00 0.00 4.79
515 1642 7.981142 TCTTAACGGCAAGTATATTTTGGAAG 58.019 34.615 0.00 0.00 0.00 3.46
518 1645 7.700656 CCTTTCTTAACGGCAAGTATATTTTGG 59.299 37.037 0.00 0.00 0.00 3.28
531 1658 1.732809 GAGACTGCCTTTCTTAACGGC 59.267 52.381 0.50 0.50 44.02 5.68
532 1659 2.996621 CTGAGACTGCCTTTCTTAACGG 59.003 50.000 0.00 0.00 0.00 4.44
535 1662 3.307059 GCCTCTGAGACTGCCTTTCTTAA 60.307 47.826 6.17 0.00 0.00 1.85
537 1664 1.003003 GCCTCTGAGACTGCCTTTCTT 59.997 52.381 6.17 0.00 0.00 2.52
538 1665 0.612744 GCCTCTGAGACTGCCTTTCT 59.387 55.000 6.17 0.00 0.00 2.52
539 1666 0.612744 AGCCTCTGAGACTGCCTTTC 59.387 55.000 6.17 0.00 0.00 2.62
541 1668 0.252193 AGAGCCTCTGAGACTGCCTT 60.252 55.000 6.17 0.00 0.00 4.35
543 1670 1.136110 GTTAGAGCCTCTGAGACTGCC 59.864 57.143 3.98 0.00 0.00 4.85
545 1672 2.165437 GTGGTTAGAGCCTCTGAGACTG 59.835 54.545 3.98 0.00 0.00 3.51
546 1673 2.225142 TGTGGTTAGAGCCTCTGAGACT 60.225 50.000 3.98 0.00 0.00 3.24
547 1674 2.094442 GTGTGGTTAGAGCCTCTGAGAC 60.094 54.545 3.98 0.49 0.00 3.36
548 1675 2.171840 GTGTGGTTAGAGCCTCTGAGA 58.828 52.381 3.98 0.00 0.00 3.27
549 1676 1.205893 GGTGTGGTTAGAGCCTCTGAG 59.794 57.143 3.98 0.00 0.00 3.35
550 1677 1.203187 AGGTGTGGTTAGAGCCTCTGA 60.203 52.381 3.98 0.00 0.00 3.27
551 1678 1.270907 AGGTGTGGTTAGAGCCTCTG 58.729 55.000 3.98 0.00 0.00 3.35
553 1680 2.303311 AGAAAGGTGTGGTTAGAGCCTC 59.697 50.000 0.00 0.00 0.00 4.70
555 1682 2.224548 ACAGAAAGGTGTGGTTAGAGCC 60.225 50.000 0.00 0.00 0.00 4.70
556 1683 3.127425 ACAGAAAGGTGTGGTTAGAGC 57.873 47.619 0.00 0.00 0.00 4.09
557 1684 7.444183 TCATTAAACAGAAAGGTGTGGTTAGAG 59.556 37.037 0.00 0.00 32.26 2.43
558 1685 7.284074 TCATTAAACAGAAAGGTGTGGTTAGA 58.716 34.615 0.00 0.00 32.26 2.10
559 1686 7.504924 TCATTAAACAGAAAGGTGTGGTTAG 57.495 36.000 0.00 0.00 32.26 2.34
586 1713 8.849490 CGTCGAATGAAATTTATGAACATGTTT 58.151 29.630 13.36 0.00 36.07 2.83
587 1714 8.233868 TCGTCGAATGAAATTTATGAACATGTT 58.766 29.630 11.78 11.78 36.07 2.71
588 1715 7.692291 GTCGTCGAATGAAATTTATGAACATGT 59.308 33.333 0.00 0.00 36.07 3.21
590 1717 6.899771 CGTCGTCGAATGAAATTTATGAACAT 59.100 34.615 0.00 0.00 36.07 2.71
591 1718 6.089685 TCGTCGTCGAATGAAATTTATGAACA 59.910 34.615 1.37 0.00 43.34 3.18
592 1719 6.463478 TCGTCGTCGAATGAAATTTATGAAC 58.537 36.000 1.37 0.00 43.34 3.18
593 1720 6.635166 TCGTCGTCGAATGAAATTTATGAA 57.365 33.333 1.37 0.00 43.34 2.57
607 1734 1.270274 TCCTTTTGGATTCGTCGTCGA 59.730 47.619 0.00 0.00 45.19 4.20
621 1748 1.608590 CGAACCTGTGTGCATCCTTTT 59.391 47.619 0.00 0.00 0.00 2.27
623 1750 0.606401 CCGAACCTGTGTGCATCCTT 60.606 55.000 0.00 0.00 0.00 3.36
624 1751 1.003355 CCGAACCTGTGTGCATCCT 60.003 57.895 0.00 0.00 0.00 3.24
626 1753 0.517316 GAACCGAACCTGTGTGCATC 59.483 55.000 0.00 0.00 0.00 3.91
627 1754 0.108585 AGAACCGAACCTGTGTGCAT 59.891 50.000 0.00 0.00 0.00 3.96
628 1755 0.813610 CAGAACCGAACCTGTGTGCA 60.814 55.000 0.00 0.00 0.00 4.57
629 1756 1.941812 CAGAACCGAACCTGTGTGC 59.058 57.895 0.00 0.00 0.00 4.57
631 1758 1.045407 TAGCAGAACCGAACCTGTGT 58.955 50.000 0.00 0.00 33.19 3.72
632 1759 2.163818 TTAGCAGAACCGAACCTGTG 57.836 50.000 0.00 0.00 33.19 3.66
633 1760 2.301870 TGATTAGCAGAACCGAACCTGT 59.698 45.455 0.00 0.00 33.19 4.00
634 1761 2.972625 TGATTAGCAGAACCGAACCTG 58.027 47.619 0.00 0.00 0.00 4.00
646 1773 0.739462 CCGCCGTCAACTGATTAGCA 60.739 55.000 0.00 0.00 0.00 3.49
647 1774 2.006772 CCGCCGTCAACTGATTAGC 58.993 57.895 0.00 0.00 0.00 3.09
648 1775 1.429148 GGCCGCCGTCAACTGATTAG 61.429 60.000 0.00 0.00 0.00 1.73
649 1776 1.448893 GGCCGCCGTCAACTGATTA 60.449 57.895 0.00 0.00 0.00 1.75
650 1777 2.746277 GGCCGCCGTCAACTGATT 60.746 61.111 0.00 0.00 0.00 2.57
741 1868 0.178533 AGGACGAAACGGTGGTCAAA 59.821 50.000 7.17 0.00 36.72 2.69
763 1897 1.904990 GAGTGGGAAGAGGAGTGGGC 61.905 65.000 0.00 0.00 0.00 5.36
801 1935 1.874466 GTTAGTGAGCCGAGCGAGC 60.874 63.158 0.00 0.00 0.00 5.03
807 1941 1.066605 GCGGATTAGTTAGTGAGCCGA 59.933 52.381 12.58 0.00 39.62 5.54
876 2014 1.675552 CTGGTGGGTCTCGTTTGTTT 58.324 50.000 0.00 0.00 0.00 2.83
988 2126 3.711782 AGGGGAGGGGAGGGGAAG 61.712 72.222 0.00 0.00 0.00 3.46
989 2127 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
1047 2218 1.748500 GGCCTCTCTTTGCTGCTCC 60.749 63.158 0.00 0.00 0.00 4.70
1054 2230 2.231215 CCAGATACGGCCTCTCTTTG 57.769 55.000 0.00 0.00 0.00 2.77
1066 2242 4.664677 ATCGCCCGCGCCAGATAC 62.665 66.667 0.00 0.00 39.59 2.24
1067 2243 4.662961 CATCGCCCGCGCCAGATA 62.663 66.667 0.00 0.00 39.59 1.98
1073 2249 3.706668 GATCTTCATCGCCCGCGC 61.707 66.667 0.00 0.00 39.59 6.86
1074 2250 3.038417 GGATCTTCATCGCCCGCG 61.038 66.667 0.00 0.00 41.35 6.46
1075 2251 1.958205 CTGGATCTTCATCGCCCGC 60.958 63.158 0.00 0.00 0.00 6.13
1076 2252 0.877649 CACTGGATCTTCATCGCCCG 60.878 60.000 0.00 0.00 0.00 6.13
1283 2459 4.890306 GAGGAGGGAGGGAGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
1307 2489 1.617947 AATCGAGACAGACAGGGGCC 61.618 60.000 0.00 0.00 0.00 5.80
1309 2491 0.176680 CCAATCGAGACAGACAGGGG 59.823 60.000 0.00 0.00 0.00 4.79
1315 2497 2.721167 CGCCCCCAATCGAGACAGA 61.721 63.158 0.00 0.00 0.00 3.41
1367 2549 2.672478 CGAAATCAGACAACGCCTCTCT 60.672 50.000 0.00 0.00 0.00 3.10
1376 2558 5.048013 TCTCTCAGCTAACGAAATCAGACAA 60.048 40.000 0.00 0.00 0.00 3.18
1403 2585 6.071560 TCACATCCGAAACTGATTACTGTAGT 60.072 38.462 0.00 0.00 0.00 2.73
1412 2594 2.499289 AGAGCTCACATCCGAAACTGAT 59.501 45.455 17.77 0.00 0.00 2.90
1414 2596 2.376808 AGAGCTCACATCCGAAACTG 57.623 50.000 17.77 0.00 0.00 3.16
1435 2617 5.185828 GCTGAATAAACAATTCTTCCCCACT 59.814 40.000 0.02 0.00 43.83 4.00
1484 2666 0.947244 GCGCATCATCTTAACCCTGG 59.053 55.000 0.30 0.00 0.00 4.45
1501 2683 6.046593 TGGTTGGTACAGAGATTATTTAGCG 58.953 40.000 0.00 0.00 42.39 4.26
1509 2691 4.761739 CACAACATGGTTGGTACAGAGATT 59.238 41.667 13.09 0.00 42.39 2.40
1515 2697 2.356665 AGCACAACATGGTTGGTACA 57.643 45.000 13.09 0.00 34.57 2.90
1522 2704 1.795170 GACGCCAAGCACAACATGGT 61.795 55.000 0.00 0.00 39.44 3.55
1537 2719 2.399611 CGCGGAAAATGGAGACGC 59.600 61.111 0.00 0.00 46.04 5.19
1543 2725 1.002468 CTAAGGATGCGCGGAAAATGG 60.002 52.381 3.18 0.00 0.00 3.16
1548 2730 2.504032 CCCTAAGGATGCGCGGAA 59.496 61.111 3.18 0.00 33.47 4.30
3675 5072 7.702348 GCAAAGATAGAAAACAAACTGACACTT 59.298 33.333 0.00 0.00 0.00 3.16
3701 5098 3.006940 TGCTTAGACGCCACAATTTAGG 58.993 45.455 0.00 0.00 0.00 2.69
3702 5099 4.882671 ATGCTTAGACGCCACAATTTAG 57.117 40.909 0.00 0.00 0.00 1.85
3703 5100 5.637006 AAATGCTTAGACGCCACAATTTA 57.363 34.783 0.00 0.00 0.00 1.40
3704 5101 4.519540 AAATGCTTAGACGCCACAATTT 57.480 36.364 0.00 0.00 0.00 1.82
3705 5102 5.637006 TTAAATGCTTAGACGCCACAATT 57.363 34.783 0.00 0.00 0.00 2.32
3706 5103 5.183140 AGTTTAAATGCTTAGACGCCACAAT 59.817 36.000 0.00 0.00 29.52 2.71
3707 5104 4.517453 AGTTTAAATGCTTAGACGCCACAA 59.483 37.500 0.00 0.00 29.52 3.33
3708 5105 4.069304 AGTTTAAATGCTTAGACGCCACA 58.931 39.130 0.00 0.00 29.52 4.17
3709 5106 4.153475 TCAGTTTAAATGCTTAGACGCCAC 59.847 41.667 0.00 0.00 29.52 5.01
3710 5107 4.320023 TCAGTTTAAATGCTTAGACGCCA 58.680 39.130 0.00 0.00 29.52 5.69
3711 5108 4.939509 TCAGTTTAAATGCTTAGACGCC 57.060 40.909 0.00 0.00 29.52 5.68
3712 5109 5.869350 ACATCAGTTTAAATGCTTAGACGC 58.131 37.500 0.00 0.00 29.52 5.19
3713 5110 6.961554 GGAACATCAGTTTAAATGCTTAGACG 59.038 38.462 0.00 0.00 38.30 4.18
3714 5111 7.251281 GGGAACATCAGTTTAAATGCTTAGAC 58.749 38.462 0.00 0.00 38.30 2.59
3715 5112 6.377146 GGGGAACATCAGTTTAAATGCTTAGA 59.623 38.462 0.00 0.00 38.30 2.10
3716 5113 6.378280 AGGGGAACATCAGTTTAAATGCTTAG 59.622 38.462 0.00 0.00 38.30 2.18
3717 5114 6.252995 AGGGGAACATCAGTTTAAATGCTTA 58.747 36.000 0.00 0.00 38.30 3.09
3727 5124 5.779241 TCTTTCATAGGGGAACATCAGTT 57.221 39.130 0.00 0.00 41.64 3.16
3749 5146 7.391620 ACAAAGCAATGATTGATCTGGATTTT 58.608 30.769 9.76 0.00 0.00 1.82
3763 5160 5.945784 ACATTCTAGCCTTACAAAGCAATGA 59.054 36.000 0.00 0.00 0.00 2.57
6917 8962 9.457436 GGACTTTACATCTAAACAAATAGGGAA 57.543 33.333 0.00 0.00 0.00 3.97
6918 8963 8.607713 TGGACTTTACATCTAAACAAATAGGGA 58.392 33.333 0.00 0.00 0.00 4.20
6919 8964 8.801882 TGGACTTTACATCTAAACAAATAGGG 57.198 34.615 0.00 0.00 0.00 3.53
6930 8975 9.832445 GAGGAATGTAATTGGACTTTACATCTA 57.168 33.333 8.92 0.00 45.11 1.98
6931 8976 8.552296 AGAGGAATGTAATTGGACTTTACATCT 58.448 33.333 8.92 4.30 45.11 2.90
6932 8977 8.616076 CAGAGGAATGTAATTGGACTTTACATC 58.384 37.037 8.92 4.47 45.11 3.06
6933 8978 8.328758 TCAGAGGAATGTAATTGGACTTTACAT 58.671 33.333 3.81 3.81 46.84 2.29
6934 8979 7.606456 GTCAGAGGAATGTAATTGGACTTTACA 59.394 37.037 0.00 0.00 42.11 2.41
6935 8980 7.606456 TGTCAGAGGAATGTAATTGGACTTTAC 59.394 37.037 0.00 0.00 36.07 2.01
6936 8981 7.685481 TGTCAGAGGAATGTAATTGGACTTTA 58.315 34.615 0.00 0.00 36.07 1.85
6937 8982 6.542821 TGTCAGAGGAATGTAATTGGACTTT 58.457 36.000 0.00 0.00 36.07 2.66
6956 9001 3.377346 AATAGCGGCACTCTATGTCAG 57.623 47.619 1.45 0.00 36.39 3.51
6960 9005 4.216472 TCAGTCTAATAGCGGCACTCTATG 59.784 45.833 1.45 0.00 36.39 2.23
6971 9016 7.126733 TCCCTTCCCTATATCAGTCTAATAGC 58.873 42.308 0.00 0.00 0.00 2.97
6982 9027 6.070481 GGACATCTCTTTCCCTTCCCTATATC 60.070 46.154 0.00 0.00 0.00 1.63
7117 9162 0.467290 ACAACACACACCATCCCCAC 60.467 55.000 0.00 0.00 0.00 4.61
7141 9186 5.065218 GTGTCATGCTTAACTCAACCCATAG 59.935 44.000 0.00 0.00 0.00 2.23
7156 9201 5.700832 TCAAACTCGAAATAAGTGTCATGCT 59.299 36.000 0.00 0.00 0.00 3.79
7196 9241 7.329962 TGCTGAAAATTATGCATCAAGAAACAG 59.670 33.333 0.19 7.74 0.00 3.16
7234 9279 2.610859 GACAGGGGAAGGGAGGCA 60.611 66.667 0.00 0.00 0.00 4.75
7280 9325 7.310237 CCCAAATCAACTCATGAGAAAAATCCT 60.310 37.037 29.27 0.63 42.53 3.24
7296 9341 1.468914 GAAGAGACCGCCCAAATCAAC 59.531 52.381 0.00 0.00 0.00 3.18
7314 9359 1.661617 CAGGTCGACAAACAACGTGAA 59.338 47.619 18.91 0.00 32.10 3.18
7318 9363 1.395608 ACAACAGGTCGACAAACAACG 59.604 47.619 18.91 1.60 0.00 4.10
7344 9389 1.004918 GCCTGTGGTAGTGCTTCGT 60.005 57.895 0.00 0.00 0.00 3.85
7360 9405 6.311200 GGTTTGTTTCAAAGATACATGATGCC 59.689 38.462 0.00 0.00 0.00 4.40
7370 9415 7.423844 AAAGAGGAAGGTTTGTTTCAAAGAT 57.576 32.000 0.00 0.00 0.00 2.40
7372 9417 7.819415 AGAAAAAGAGGAAGGTTTGTTTCAAAG 59.181 33.333 0.00 0.00 0.00 2.77
7373 9418 7.676004 AGAAAAAGAGGAAGGTTTGTTTCAAA 58.324 30.769 0.00 0.00 0.00 2.69
7394 9439 6.187727 ACAAATCAACTCCTGGTCTAGAAA 57.812 37.500 0.00 0.00 0.00 2.52
7407 9452 7.963532 TCTACTTCTACCTGAACAAATCAACT 58.036 34.615 0.00 0.00 37.67 3.16
7431 9476 9.956640 ATCTTAATTCTGAGGATATCATGGTTC 57.043 33.333 4.83 0.00 37.28 3.62
7432 9477 9.956640 GATCTTAATTCTGAGGATATCATGGTT 57.043 33.333 4.83 0.00 37.28 3.67
7433 9478 8.547173 GGATCTTAATTCTGAGGATATCATGGT 58.453 37.037 4.83 0.00 37.28 3.55
7434 9479 8.770322 AGGATCTTAATTCTGAGGATATCATGG 58.230 37.037 4.83 0.00 37.28 3.66
7461 9506 9.770097 CCTCTTGCTCACTCTATGAATAAAATA 57.230 33.333 0.00 0.00 36.69 1.40
7462 9507 8.270744 ACCTCTTGCTCACTCTATGAATAAAAT 58.729 33.333 0.00 0.00 36.69 1.82
7467 9512 5.690464 AACCTCTTGCTCACTCTATGAAT 57.310 39.130 0.00 0.00 36.69 2.57
7468 9513 5.240891 CAAACCTCTTGCTCACTCTATGAA 58.759 41.667 0.00 0.00 36.69 2.57
7469 9514 4.323028 CCAAACCTCTTGCTCACTCTATGA 60.323 45.833 0.00 0.00 35.45 2.15
7550 9597 9.967451 TTTCACCTGTATGTGGAAGATATTTAA 57.033 29.630 0.00 0.00 36.87 1.52
7583 9630 3.735591 TCTTTACCTCAGTGGAAAACCG 58.264 45.455 0.00 0.00 39.71 4.44
7593 9640 5.529791 TGAAACGTCTTCTCTTTACCTCAG 58.470 41.667 10.41 0.00 0.00 3.35
7595 9642 5.348997 CCATGAAACGTCTTCTCTTTACCTC 59.651 44.000 0.00 0.00 0.00 3.85
7619 9666 9.282247 CACACTGCTCAAAACATTAAATAGATC 57.718 33.333 0.00 0.00 0.00 2.75
7633 9680 1.832883 AACCACACACACTGCTCAAA 58.167 45.000 0.00 0.00 0.00 2.69
7635 9682 1.093972 CAAACCACACACACTGCTCA 58.906 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.