Multiple sequence alignment - TraesCS7D01G102900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G102900 chr7D 100.000 3443 0 0 1 3443 62279083 62282525 0.000000e+00 6359.0
1 TraesCS7D01G102900 chr7D 95.179 2800 123 10 109 2900 62121104 62123899 0.000000e+00 4412.0
2 TraesCS7D01G102900 chr7D 79.575 1743 314 29 959 2696 62260722 62259017 0.000000e+00 1208.0
3 TraesCS7D01G102900 chr7D 81.951 1374 245 3 1081 2453 60705444 60704073 0.000000e+00 1160.0
4 TraesCS7D01G102900 chr7D 82.038 1364 227 16 1085 2439 61228788 61227434 0.000000e+00 1146.0
5 TraesCS7D01G102900 chr7D 99.074 108 1 0 1 108 40790062 40790169 9.750000e-46 195.0
6 TraesCS7D01G102900 chr7A 94.799 2980 142 6 109 3082 65440942 65443914 0.000000e+00 4632.0
7 TraesCS7D01G102900 chr7A 82.478 1364 221 17 1085 2439 65154700 65153346 0.000000e+00 1179.0
8 TraesCS7D01G102900 chr7A 78.720 1781 327 35 926 2695 65329991 65328252 0.000000e+00 1142.0
9 TraesCS7D01G102900 chr7B 81.905 1354 231 11 1081 2427 3540221 3541567 0.000000e+00 1131.0
10 TraesCS7D01G102900 chr2A 81.015 1359 252 5 1089 2446 734654200 734652847 0.000000e+00 1075.0
11 TraesCS7D01G102900 chr2D 97.414 348 6 2 3099 3443 567641377 567641030 1.060000e-164 590.0
12 TraesCS7D01G102900 chr2D 97.414 116 2 1 1 115 22833818 22833703 2.710000e-46 196.0
13 TraesCS7D01G102900 chr1D 94.134 358 7 2 3100 3443 318476840 318477197 1.820000e-147 532.0
14 TraesCS7D01G102900 chr1D 99.074 108 1 0 1 108 318122988 318122881 9.750000e-46 195.0
15 TraesCS7D01G102900 chr1D 99.074 108 1 0 1 108 389425815 389425922 9.750000e-46 195.0
16 TraesCS7D01G102900 chr1D 99.074 108 1 0 1 108 421870207 421870100 9.750000e-46 195.0
17 TraesCS7D01G102900 chr1D 99.074 108 1 0 1 108 471929535 471929642 9.750000e-46 195.0
18 TraesCS7D01G102900 chr1D 89.286 56 5 1 3100 3154 100816270 100816215 6.170000e-08 69.4
19 TraesCS7D01G102900 chr3D 89.189 222 24 0 2739 2960 15873054 15873275 9.410000e-71 278.0
20 TraesCS7D01G102900 chr4B 89.189 222 23 1 2739 2960 552777548 552777328 3.380000e-70 276.0
21 TraesCS7D01G102900 chr5D 99.074 108 1 0 1 108 29141861 29141754 9.750000e-46 195.0
22 TraesCS7D01G102900 chr5D 90.741 54 4 1 3109 3162 412149849 412149901 1.710000e-08 71.3
23 TraesCS7D01G102900 chr4D 99.074 108 1 0 1 108 7930031 7930138 9.750000e-46 195.0
24 TraesCS7D01G102900 chr6D 98.148 108 2 0 1 108 68637446 68637553 4.540000e-44 189.0
25 TraesCS7D01G102900 chr6D 88.889 54 6 0 3109 3162 112428833 112428780 2.220000e-07 67.6
26 TraesCS7D01G102900 chr2B 89.189 74 7 1 3090 3162 111667268 111667195 1.320000e-14 91.6
27 TraesCS7D01G102900 chr3A 88.889 63 7 0 3100 3162 21335233 21335295 1.020000e-10 78.7
28 TraesCS7D01G102900 chr6B 92.593 54 2 2 3099 3151 655893776 655893724 3.680000e-10 76.8
29 TraesCS7D01G102900 chr1B 89.474 57 5 1 3099 3154 151004396 151004452 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G102900 chr7D 62279083 62282525 3442 False 6359 6359 100.000 1 3443 1 chr7D.!!$F3 3442
1 TraesCS7D01G102900 chr7D 62121104 62123899 2795 False 4412 4412 95.179 109 2900 1 chr7D.!!$F2 2791
2 TraesCS7D01G102900 chr7D 62259017 62260722 1705 True 1208 1208 79.575 959 2696 1 chr7D.!!$R3 1737
3 TraesCS7D01G102900 chr7D 60704073 60705444 1371 True 1160 1160 81.951 1081 2453 1 chr7D.!!$R1 1372
4 TraesCS7D01G102900 chr7D 61227434 61228788 1354 True 1146 1146 82.038 1085 2439 1 chr7D.!!$R2 1354
5 TraesCS7D01G102900 chr7A 65440942 65443914 2972 False 4632 4632 94.799 109 3082 1 chr7A.!!$F1 2973
6 TraesCS7D01G102900 chr7A 65153346 65154700 1354 True 1179 1179 82.478 1085 2439 1 chr7A.!!$R1 1354
7 TraesCS7D01G102900 chr7A 65328252 65329991 1739 True 1142 1142 78.720 926 2695 1 chr7A.!!$R2 1769
8 TraesCS7D01G102900 chr7B 3540221 3541567 1346 False 1131 1131 81.905 1081 2427 1 chr7B.!!$F1 1346
9 TraesCS7D01G102900 chr2A 734652847 734654200 1353 True 1075 1075 81.015 1089 2446 1 chr2A.!!$R1 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.029035 AGAATCGTGTACTAGCGCCG 59.971 55.0 2.29 0.0 0.0 6.46 F
616 618 0.030101 TTTGCCGGCTCAGTTTTTCG 59.970 50.0 29.70 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 1961 0.035317 TTCAGTGCGTCTCCAGCAAT 59.965 50.000 0.0 0.0 46.97 3.56 R
2542 2550 1.073763 CGCTAATGGAATCCCCCATCA 59.926 52.381 0.0 0.0 45.69 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.967740 ACACCTCACGTCGTTGAAC 58.032 52.632 0.00 0.00 0.00 3.18
19 20 0.173935 ACACCTCACGTCGTTGAACA 59.826 50.000 0.00 0.00 0.00 3.18
20 21 1.282817 CACCTCACGTCGTTGAACAA 58.717 50.000 0.00 0.00 0.00 2.83
21 22 1.864711 CACCTCACGTCGTTGAACAAT 59.135 47.619 0.00 0.00 0.00 2.71
22 23 1.864711 ACCTCACGTCGTTGAACAATG 59.135 47.619 0.00 0.87 0.00 2.82
23 24 1.398451 CCTCACGTCGTTGAACAATGC 60.398 52.381 0.00 0.00 0.00 3.56
24 25 0.231024 TCACGTCGTTGAACAATGCG 59.769 50.000 15.74 15.74 35.01 4.73
25 26 0.231024 CACGTCGTTGAACAATGCGA 59.769 50.000 20.53 11.22 33.95 5.10
26 27 1.136363 CACGTCGTTGAACAATGCGAT 60.136 47.619 20.53 9.52 35.78 4.58
27 28 2.091432 CACGTCGTTGAACAATGCGATA 59.909 45.455 20.53 0.00 35.78 2.92
28 29 2.927477 ACGTCGTTGAACAATGCGATAT 59.073 40.909 20.53 6.00 35.78 1.63
29 30 4.027214 CACGTCGTTGAACAATGCGATATA 60.027 41.667 20.53 0.00 35.78 0.86
30 31 4.563580 ACGTCGTTGAACAATGCGATATAA 59.436 37.500 20.53 0.00 35.78 0.98
31 32 5.062433 ACGTCGTTGAACAATGCGATATAAA 59.938 36.000 20.53 0.00 35.78 1.40
32 33 5.611596 CGTCGTTGAACAATGCGATATAAAG 59.388 40.000 13.67 0.00 35.78 1.85
33 34 6.507299 CGTCGTTGAACAATGCGATATAAAGA 60.507 38.462 13.67 0.00 35.78 2.52
34 35 6.623743 GTCGTTGAACAATGCGATATAAAGAC 59.376 38.462 0.00 0.00 35.78 3.01
35 36 5.611596 CGTTGAACAATGCGATATAAAGACG 59.388 40.000 0.00 0.00 0.00 4.18
36 37 5.651172 TGAACAATGCGATATAAAGACGG 57.349 39.130 0.00 0.00 0.00 4.79
37 38 5.353111 TGAACAATGCGATATAAAGACGGA 58.647 37.500 0.00 0.00 0.00 4.69
38 39 5.989168 TGAACAATGCGATATAAAGACGGAT 59.011 36.000 0.00 0.00 39.45 4.18
39 40 7.149307 TGAACAATGCGATATAAAGACGGATA 58.851 34.615 0.00 0.00 37.13 2.59
40 41 7.817478 TGAACAATGCGATATAAAGACGGATAT 59.183 33.333 0.00 0.00 37.13 1.63
41 42 8.547967 AACAATGCGATATAAAGACGGATATT 57.452 30.769 0.00 0.00 37.13 1.28
42 43 7.963981 ACAATGCGATATAAAGACGGATATTG 58.036 34.615 0.00 0.00 37.13 1.90
43 44 7.817478 ACAATGCGATATAAAGACGGATATTGA 59.183 33.333 0.00 0.00 37.13 2.57
44 45 8.655970 CAATGCGATATAAAGACGGATATTGAA 58.344 33.333 0.00 0.00 37.13 2.69
45 46 8.948631 ATGCGATATAAAGACGGATATTGAAT 57.051 30.769 0.00 0.00 36.46 2.57
46 47 8.185003 TGCGATATAAAGACGGATATTGAATG 57.815 34.615 0.00 0.00 0.00 2.67
47 48 7.277760 TGCGATATAAAGACGGATATTGAATGG 59.722 37.037 0.00 0.00 0.00 3.16
48 49 7.621991 CGATATAAAGACGGATATTGAATGGC 58.378 38.462 0.00 0.00 0.00 4.40
49 50 7.254455 CGATATAAAGACGGATATTGAATGGCC 60.254 40.741 0.00 0.00 0.00 5.36
50 51 3.576078 AAGACGGATATTGAATGGCCA 57.424 42.857 8.56 8.56 0.00 5.36
51 52 3.576078 AGACGGATATTGAATGGCCAA 57.424 42.857 10.96 0.00 0.00 4.52
52 53 3.480470 AGACGGATATTGAATGGCCAAG 58.520 45.455 10.96 0.00 0.00 3.61
53 54 2.554032 GACGGATATTGAATGGCCAAGG 59.446 50.000 10.96 0.00 0.00 3.61
54 55 1.888512 CGGATATTGAATGGCCAAGGG 59.111 52.381 10.96 0.00 0.00 3.95
55 56 2.752829 CGGATATTGAATGGCCAAGGGT 60.753 50.000 10.96 0.00 0.00 4.34
56 57 2.629617 GGATATTGAATGGCCAAGGGTG 59.370 50.000 10.96 0.00 0.00 4.61
57 58 2.917713 TATTGAATGGCCAAGGGTGT 57.082 45.000 10.96 0.00 0.00 4.16
58 59 1.560505 ATTGAATGGCCAAGGGTGTC 58.439 50.000 10.96 1.00 0.00 3.67
59 60 0.482446 TTGAATGGCCAAGGGTGTCT 59.518 50.000 10.96 0.00 0.00 3.41
60 61 0.038166 TGAATGGCCAAGGGTGTCTC 59.962 55.000 10.96 0.00 0.00 3.36
61 62 0.038166 GAATGGCCAAGGGTGTCTCA 59.962 55.000 10.96 0.00 0.00 3.27
62 63 0.251341 AATGGCCAAGGGTGTCTCAC 60.251 55.000 10.96 0.00 0.00 3.51
70 71 2.741092 GGTGTCTCACCGAGCCAA 59.259 61.111 3.12 0.00 44.95 4.52
71 72 1.374758 GGTGTCTCACCGAGCCAAG 60.375 63.158 3.12 0.00 44.95 3.61
72 73 1.367840 GTGTCTCACCGAGCCAAGT 59.632 57.895 0.00 0.00 0.00 3.16
73 74 0.601558 GTGTCTCACCGAGCCAAGTA 59.398 55.000 0.00 0.00 0.00 2.24
74 75 1.204941 GTGTCTCACCGAGCCAAGTAT 59.795 52.381 0.00 0.00 0.00 2.12
75 76 1.476891 TGTCTCACCGAGCCAAGTATC 59.523 52.381 0.00 0.00 0.00 2.24
76 77 1.112113 TCTCACCGAGCCAAGTATCC 58.888 55.000 0.00 0.00 0.00 2.59
77 78 1.115467 CTCACCGAGCCAAGTATCCT 58.885 55.000 0.00 0.00 0.00 3.24
78 79 1.067821 CTCACCGAGCCAAGTATCCTC 59.932 57.143 0.00 0.00 0.00 3.71
79 80 0.105039 CACCGAGCCAAGTATCCTCC 59.895 60.000 0.00 0.00 0.00 4.30
80 81 1.049289 ACCGAGCCAAGTATCCTCCC 61.049 60.000 0.00 0.00 0.00 4.30
81 82 1.048724 CCGAGCCAAGTATCCTCCCA 61.049 60.000 0.00 0.00 0.00 4.37
82 83 0.390860 CGAGCCAAGTATCCTCCCAG 59.609 60.000 0.00 0.00 0.00 4.45
83 84 1.794714 GAGCCAAGTATCCTCCCAGA 58.205 55.000 0.00 0.00 0.00 3.86
84 85 2.119495 GAGCCAAGTATCCTCCCAGAA 58.881 52.381 0.00 0.00 0.00 3.02
85 86 2.708325 GAGCCAAGTATCCTCCCAGAAT 59.292 50.000 0.00 0.00 0.00 2.40
86 87 2.708325 AGCCAAGTATCCTCCCAGAATC 59.292 50.000 0.00 0.00 0.00 2.52
87 88 2.548920 GCCAAGTATCCTCCCAGAATCG 60.549 54.545 0.00 0.00 0.00 3.34
88 89 2.700897 CCAAGTATCCTCCCAGAATCGT 59.299 50.000 0.00 0.00 0.00 3.73
89 90 3.493350 CCAAGTATCCTCCCAGAATCGTG 60.493 52.174 0.00 0.00 0.00 4.35
90 91 3.033659 AGTATCCTCCCAGAATCGTGT 57.966 47.619 0.00 0.00 0.00 4.49
91 92 4.180377 AGTATCCTCCCAGAATCGTGTA 57.820 45.455 0.00 0.00 0.00 2.90
92 93 3.890147 AGTATCCTCCCAGAATCGTGTAC 59.110 47.826 0.00 0.00 0.00 2.90
93 94 2.526888 TCCTCCCAGAATCGTGTACT 57.473 50.000 0.00 0.00 0.00 2.73
94 95 3.657398 TCCTCCCAGAATCGTGTACTA 57.343 47.619 0.00 0.00 0.00 1.82
95 96 3.552875 TCCTCCCAGAATCGTGTACTAG 58.447 50.000 0.00 0.00 0.00 2.57
96 97 2.034812 CCTCCCAGAATCGTGTACTAGC 59.965 54.545 0.00 0.00 0.00 3.42
97 98 1.674441 TCCCAGAATCGTGTACTAGCG 59.326 52.381 0.00 0.00 0.00 4.26
98 99 1.478137 CCAGAATCGTGTACTAGCGC 58.522 55.000 0.00 0.00 0.00 5.92
99 100 1.478137 CAGAATCGTGTACTAGCGCC 58.522 55.000 2.29 0.00 0.00 6.53
100 101 0.029035 AGAATCGTGTACTAGCGCCG 59.971 55.000 2.29 0.00 0.00 6.46
101 102 0.248377 GAATCGTGTACTAGCGCCGT 60.248 55.000 2.29 4.12 0.00 5.68
102 103 0.171903 AATCGTGTACTAGCGCCGTT 59.828 50.000 2.29 0.00 0.00 4.44
103 104 0.524816 ATCGTGTACTAGCGCCGTTG 60.525 55.000 2.29 0.00 0.00 4.10
104 105 2.785105 CGTGTACTAGCGCCGTTGC 61.785 63.158 2.29 0.00 0.00 4.17
105 106 2.125832 TGTACTAGCGCCGTTGCC 60.126 61.111 2.29 0.00 34.65 4.52
106 107 2.125832 GTACTAGCGCCGTTGCCA 60.126 61.111 2.29 0.00 34.65 4.92
107 108 1.738830 GTACTAGCGCCGTTGCCAA 60.739 57.895 2.29 0.00 34.65 4.52
125 126 5.505780 TGCCAAAATTACCACTAGCATACT 58.494 37.500 0.00 0.00 0.00 2.12
161 162 1.277842 GGCCCAACAAAATTAGGTGGG 59.722 52.381 23.38 23.38 38.11 4.61
166 167 5.747545 GCCCAACAAAATTAGGTGGGAAAAT 60.748 40.000 29.08 0.00 37.29 1.82
333 335 2.561569 AGACCACCTTGTCGTTTTCAG 58.438 47.619 0.00 0.00 40.26 3.02
386 388 3.117171 CTCCTGCAGCGTGCTGTC 61.117 66.667 21.76 14.65 45.31 3.51
389 391 2.545596 CCTGCAGCGTGCTGTCAAA 61.546 57.895 21.76 6.19 45.31 2.69
549 551 3.254166 AGAATTTTTGCTCATGCTCGTGT 59.746 39.130 0.00 0.00 40.48 4.49
550 552 2.404265 TTTTTGCTCATGCTCGTGTG 57.596 45.000 0.00 0.00 40.48 3.82
565 567 1.532078 TGTGCACCCCTCGACTACA 60.532 57.895 15.69 0.00 0.00 2.74
570 572 1.843368 CACCCCTCGACTACAAGGTA 58.157 55.000 0.00 0.00 0.00 3.08
616 618 0.030101 TTTGCCGGCTCAGTTTTTCG 59.970 50.000 29.70 0.00 0.00 3.46
620 622 1.508632 CCGGCTCAGTTTTTCGAAGA 58.491 50.000 0.00 0.00 0.00 2.87
666 668 8.716646 TGTATGTGTGTGAGTTTATAAGGATG 57.283 34.615 0.00 0.00 0.00 3.51
676 678 8.540492 GTGAGTTTATAAGGATGAATGTACGTG 58.460 37.037 0.00 0.00 0.00 4.49
681 683 1.942657 AGGATGAATGTACGTGCATGC 59.057 47.619 20.14 18.53 0.00 4.06
791 793 9.371136 TCATATGTTGTTACAAGATTCTGAGTC 57.629 33.333 12.82 0.00 37.91 3.36
794 796 5.991606 TGTTGTTACAAGATTCTGAGTCCAG 59.008 40.000 0.00 0.00 41.74 3.86
863 865 5.598417 ACTTTCACAGTTGGAGCCTTAAATT 59.402 36.000 0.00 0.00 27.32 1.82
901 903 3.242944 CGATTACGAAGTACAGCACATGG 59.757 47.826 0.00 0.00 45.76 3.66
1258 1265 3.431725 GCTTCCGGCCAAACTCCG 61.432 66.667 2.24 0.00 46.05 4.63
1648 1655 1.267932 GCTCAGCTTCAATGATCGCAC 60.268 52.381 7.58 0.00 0.00 5.34
1921 1928 1.014564 GGAAGACGAGAAGGGCAACG 61.015 60.000 0.00 0.00 37.60 4.10
1954 1961 9.961264 TCACTCTCTCTAAAGATCTTACTGTTA 57.039 33.333 8.75 0.00 0.00 2.41
2041 2048 4.452795 AGCTTCTTAAGTTTTCGCTCTTCC 59.547 41.667 1.63 0.00 0.00 3.46
2154 2161 0.872021 GTCCGGCAGTTATCAGCTCG 60.872 60.000 0.00 0.00 0.00 5.03
2369 2376 5.772393 TGGGTCTGTATACAACCATCTTT 57.228 39.130 25.43 0.00 34.62 2.52
2477 2484 6.071984 ACTGTGTAATCTACTATCAGGAGGG 58.928 44.000 0.00 0.00 32.01 4.30
2666 2675 4.697352 GTGGTTGTACAGATGAGCATCTTT 59.303 41.667 10.15 7.24 45.31 2.52
2732 2741 7.226523 AGTGGCACTTCAAATTGGTAAATTTTC 59.773 33.333 15.88 0.00 42.14 2.29
2736 2745 8.925700 GCACTTCAAATTGGTAAATTTTCTAGG 58.074 33.333 0.00 0.00 42.14 3.02
2743 2752 5.750352 TGGTAAATTTTCTAGGGACTCGT 57.250 39.130 0.00 0.00 41.75 4.18
2767 2776 3.914966 GTGTGAGACATGTGACTTCTACG 59.085 47.826 1.15 0.00 0.00 3.51
2782 2791 3.795623 TCTACGACCTGTATTCTTGGC 57.204 47.619 0.00 0.00 31.20 4.52
2811 2820 4.383173 GGTTTGGTATACGTTATGGGAGG 58.617 47.826 0.00 0.00 0.00 4.30
2815 2831 2.233186 GGTATACGTTATGGGAGGAGCC 59.767 54.545 0.00 0.00 0.00 4.70
2820 2836 0.105039 GTTATGGGAGGAGCCGACTG 59.895 60.000 0.00 0.00 37.63 3.51
2824 2840 2.182030 GGAGGAGCCGACTGAACG 59.818 66.667 0.00 0.00 0.00 3.95
2889 2905 5.220381 TCGATGAGTCTTGTGTACTTTGTC 58.780 41.667 0.00 0.00 0.00 3.18
2900 2916 6.164408 TGTGTACTTTGTCGCTGAATTATG 57.836 37.500 0.00 0.00 0.00 1.90
2905 2921 4.154195 ACTTTGTCGCTGAATTATGTCACC 59.846 41.667 0.00 0.00 0.00 4.02
2910 2926 3.124466 TCGCTGAATTATGTCACCGTTTG 59.876 43.478 0.00 0.00 30.38 2.93
2935 2951 2.300437 GTGCATCCTAGAGTATGGACCC 59.700 54.545 10.95 0.00 38.18 4.46
2957 2973 7.286313 ACCCAATGGTGTTTCAATTTTTGTAT 58.714 30.769 0.00 0.00 45.58 2.29
2961 2977 4.747108 TGGTGTTTCAATTTTTGTATGCCG 59.253 37.500 0.00 0.00 0.00 5.69
2964 2980 1.623359 TCAATTTTTGTATGCCGCGC 58.377 45.000 0.00 0.00 0.00 6.86
2969 2985 2.206515 TTTTGTATGCCGCGCTTGGG 62.207 55.000 5.56 0.00 0.00 4.12
2984 3000 2.418976 GCTTGGGTTATCGTGTTTCCTC 59.581 50.000 0.00 0.00 0.00 3.71
2985 3001 2.373540 TGGGTTATCGTGTTTCCTCG 57.626 50.000 0.00 0.00 0.00 4.63
2993 3009 4.920640 ATCGTGTTTCCTCGAGATACAT 57.079 40.909 15.71 0.00 38.48 2.29
2996 3012 3.181490 CGTGTTTCCTCGAGATACATCCA 60.181 47.826 15.71 0.00 38.48 3.41
3019 3035 0.538516 AAAATACACGCCCCTGCACA 60.539 50.000 0.00 0.00 37.32 4.57
3022 3038 1.626356 ATACACGCCCCTGCACATCT 61.626 55.000 0.00 0.00 37.32 2.90
3023 3039 2.520465 TACACGCCCCTGCACATCTG 62.520 60.000 0.00 0.00 37.32 2.90
3024 3040 3.640407 ACGCCCCTGCACATCTGT 61.640 61.111 0.00 0.00 37.32 3.41
3032 3048 3.009723 CCCTGCACATCTGTATCGTTTT 58.990 45.455 0.00 0.00 0.00 2.43
3035 3051 2.670905 TGCACATCTGTATCGTTTTCGG 59.329 45.455 0.00 0.00 44.25 4.30
3041 3057 0.458889 TGTATCGTTTTCGGCCGGAG 60.459 55.000 27.83 12.35 44.25 4.63
3046 3062 1.693083 CGTTTTCGGCCGGAGATCAC 61.693 60.000 27.83 11.06 39.94 3.06
3051 3067 0.110678 TCGGCCGGAGATCACTCTAT 59.889 55.000 27.83 0.00 42.28 1.98
3055 3071 1.273886 GCCGGAGATCACTCTATTCCC 59.726 57.143 5.05 0.00 42.28 3.97
3056 3072 2.598565 CCGGAGATCACTCTATTCCCA 58.401 52.381 0.00 0.00 42.28 4.37
3069 3085 9.613428 TCACTCTATTCCCATAAAATACACTTG 57.387 33.333 0.00 0.00 0.00 3.16
3105 3121 8.320338 ACTGTTAGAGTTATATTTAGGGCAGT 57.680 34.615 0.00 0.00 0.00 4.40
3106 3122 9.430399 ACTGTTAGAGTTATATTTAGGGCAGTA 57.570 33.333 0.00 0.00 0.00 2.74
3107 3123 9.694137 CTGTTAGAGTTATATTTAGGGCAGTAC 57.306 37.037 0.00 0.00 0.00 2.73
3108 3124 9.430399 TGTTAGAGTTATATTTAGGGCAGTACT 57.570 33.333 0.00 0.00 0.00 2.73
3111 3127 8.653036 AGAGTTATATTTAGGGCAGTACTAGG 57.347 38.462 0.00 0.00 0.00 3.02
3112 3128 7.178805 AGAGTTATATTTAGGGCAGTACTAGGC 59.821 40.741 0.00 2.62 0.00 3.93
3113 3129 4.803098 ATATTTAGGGCAGTACTAGGCG 57.197 45.455 0.00 0.00 0.00 5.52
3114 3130 0.462789 TTTAGGGCAGTACTAGGCGC 59.537 55.000 12.68 12.68 42.61 6.53
3115 3131 1.397390 TTAGGGCAGTACTAGGCGCC 61.397 60.000 21.89 21.89 43.22 6.53
3116 3132 2.577020 TAGGGCAGTACTAGGCGCCA 62.577 60.000 31.54 14.00 46.75 5.69
3117 3133 2.107141 GGCAGTACTAGGCGCCAG 59.893 66.667 31.54 24.74 44.25 4.85
3118 3134 2.722201 GGCAGTACTAGGCGCCAGT 61.722 63.158 31.54 28.72 44.25 4.00
3119 3135 1.227002 GCAGTACTAGGCGCCAGTC 60.227 63.158 31.54 20.26 0.00 3.51
3120 3136 1.064296 CAGTACTAGGCGCCAGTCG 59.936 63.158 31.54 15.72 42.12 4.18
3121 3137 1.077930 AGTACTAGGCGCCAGTCGA 60.078 57.895 31.54 12.74 41.67 4.20
3131 3147 4.323477 CCAGTCGACCGGCCCAAA 62.323 66.667 13.01 0.00 0.00 3.28
3132 3148 2.046314 CAGTCGACCGGCCCAAAT 60.046 61.111 13.01 0.00 0.00 2.32
3133 3149 1.674322 CAGTCGACCGGCCCAAATT 60.674 57.895 13.01 0.00 0.00 1.82
3134 3150 1.074248 AGTCGACCGGCCCAAATTT 59.926 52.632 13.01 0.00 0.00 1.82
3135 3151 1.211709 GTCGACCGGCCCAAATTTG 59.788 57.895 11.40 11.40 0.00 2.32
3144 3160 3.784573 CCAAATTTGGGCCGGTCA 58.215 55.556 26.87 1.16 44.70 4.02
3145 3161 1.291906 CCAAATTTGGGCCGGTCAC 59.708 57.895 26.87 0.00 44.70 3.67
3146 3162 1.291906 CAAATTTGGGCCGGTCACC 59.708 57.895 9.07 6.71 0.00 4.02
3175 3191 4.201679 CGATACGTGCGCCCTGGA 62.202 66.667 4.18 0.00 0.00 3.86
3176 3192 2.585247 GATACGTGCGCCCTGGAC 60.585 66.667 4.18 0.00 35.21 4.02
3177 3193 4.157120 ATACGTGCGCCCTGGACC 62.157 66.667 4.18 0.00 35.07 4.46
3180 3196 4.155733 CGTGCGCCCTGGACCATA 62.156 66.667 4.18 0.00 35.07 2.74
3181 3197 2.203070 GTGCGCCCTGGACCATAG 60.203 66.667 4.18 0.00 31.75 2.23
3182 3198 3.479203 TGCGCCCTGGACCATAGG 61.479 66.667 4.18 0.00 35.01 2.57
3183 3199 3.161450 GCGCCCTGGACCATAGGA 61.161 66.667 13.70 0.00 37.52 2.94
3184 3200 2.520536 GCGCCCTGGACCATAGGAT 61.521 63.158 13.70 0.00 37.52 3.24
3185 3201 2.056906 GCGCCCTGGACCATAGGATT 62.057 60.000 13.70 0.00 37.52 3.01
3186 3202 0.250467 CGCCCTGGACCATAGGATTG 60.250 60.000 13.70 0.66 37.52 2.67
3187 3203 0.538287 GCCCTGGACCATAGGATTGC 60.538 60.000 13.70 0.28 37.52 3.56
3188 3204 0.111253 CCCTGGACCATAGGATTGCC 59.889 60.000 4.93 0.00 37.52 4.52
3190 3206 1.072965 CCTGGACCATAGGATTGCCTC 59.927 57.143 0.00 0.00 45.54 4.70
3191 3207 0.758734 TGGACCATAGGATTGCCTCG 59.241 55.000 0.00 0.00 45.54 4.63
3192 3208 0.603975 GGACCATAGGATTGCCTCGC 60.604 60.000 0.00 0.00 45.54 5.03
3193 3209 0.106708 GACCATAGGATTGCCTCGCA 59.893 55.000 0.00 0.00 45.54 5.10
3194 3210 0.179045 ACCATAGGATTGCCTCGCAC 60.179 55.000 0.00 0.00 45.54 5.34
3195 3211 0.179048 CCATAGGATTGCCTCGCACA 60.179 55.000 0.00 0.00 45.54 4.57
3196 3212 0.940126 CATAGGATTGCCTCGCACAC 59.060 55.000 0.00 0.00 45.54 3.82
3197 3213 0.530650 ATAGGATTGCCTCGCACACG 60.531 55.000 0.00 0.00 45.54 4.49
3198 3214 1.884075 TAGGATTGCCTCGCACACGT 61.884 55.000 0.00 0.00 45.54 4.49
3199 3215 2.740714 GGATTGCCTCGCACACGTC 61.741 63.158 0.00 0.00 38.71 4.34
3200 3216 2.740714 GATTGCCTCGCACACGTCC 61.741 63.158 0.00 0.00 38.71 4.79
3201 3217 4.980805 TTGCCTCGCACACGTCCC 62.981 66.667 0.00 0.00 38.71 4.46
3203 3219 4.681978 GCCTCGCACACGTCCCTT 62.682 66.667 0.00 0.00 41.18 3.95
3204 3220 2.030562 CCTCGCACACGTCCCTTT 59.969 61.111 0.00 0.00 41.18 3.11
3205 3221 1.597027 CCTCGCACACGTCCCTTTT 60.597 57.895 0.00 0.00 41.18 2.27
3206 3222 1.566018 CCTCGCACACGTCCCTTTTC 61.566 60.000 0.00 0.00 41.18 2.29
3207 3223 0.600255 CTCGCACACGTCCCTTTTCT 60.600 55.000 0.00 0.00 41.18 2.52
3208 3224 0.179067 TCGCACACGTCCCTTTTCTT 60.179 50.000 0.00 0.00 41.18 2.52
3209 3225 0.234884 CGCACACGTCCCTTTTCTTC 59.765 55.000 0.00 0.00 33.53 2.87
3210 3226 1.594331 GCACACGTCCCTTTTCTTCT 58.406 50.000 0.00 0.00 0.00 2.85
3211 3227 1.531578 GCACACGTCCCTTTTCTTCTC 59.468 52.381 0.00 0.00 0.00 2.87
3212 3228 1.792949 CACACGTCCCTTTTCTTCTCG 59.207 52.381 0.00 0.00 0.00 4.04
3213 3229 0.790814 CACGTCCCTTTTCTTCTCGC 59.209 55.000 0.00 0.00 0.00 5.03
3214 3230 0.666577 ACGTCCCTTTTCTTCTCGCG 60.667 55.000 0.00 0.00 0.00 5.87
3215 3231 0.388134 CGTCCCTTTTCTTCTCGCGA 60.388 55.000 9.26 9.26 0.00 5.87
3216 3232 1.351153 GTCCCTTTTCTTCTCGCGAG 58.649 55.000 30.03 30.03 0.00 5.03
3217 3233 0.389948 TCCCTTTTCTTCTCGCGAGC 60.390 55.000 30.97 0.00 0.00 5.03
3218 3234 1.687494 CCCTTTTCTTCTCGCGAGCG 61.687 60.000 30.97 22.63 41.35 5.03
3219 3235 0.732880 CCTTTTCTTCTCGCGAGCGA 60.733 55.000 30.97 24.44 46.87 4.93
3220 3236 0.363846 CTTTTCTTCTCGCGAGCGAC 59.636 55.000 30.97 0.00 44.01 5.19
3221 3237 1.334992 TTTTCTTCTCGCGAGCGACG 61.335 55.000 30.97 17.46 44.01 5.12
3235 3251 3.419759 GACGCCGGTCACGCAAAT 61.420 61.111 1.90 0.00 42.91 2.32
3236 3252 3.362851 GACGCCGGTCACGCAAATC 62.363 63.158 1.90 0.00 42.91 2.17
3237 3253 4.160635 CGCCGGTCACGCAAATCC 62.161 66.667 1.90 0.00 39.22 3.01
3238 3254 3.810896 GCCGGTCACGCAAATCCC 61.811 66.667 1.90 0.00 39.22 3.85
3239 3255 3.131478 CCGGTCACGCAAATCCCC 61.131 66.667 0.00 0.00 39.22 4.81
3240 3256 2.046314 CGGTCACGCAAATCCCCT 60.046 61.111 0.00 0.00 0.00 4.79
3241 3257 2.398554 CGGTCACGCAAATCCCCTG 61.399 63.158 0.00 0.00 0.00 4.45
3242 3258 2.700773 GGTCACGCAAATCCCCTGC 61.701 63.158 0.00 0.00 36.41 4.85
3243 3259 1.675641 GTCACGCAAATCCCCTGCT 60.676 57.895 0.00 0.00 37.67 4.24
3244 3260 1.074775 TCACGCAAATCCCCTGCTT 59.925 52.632 0.00 0.00 37.67 3.91
3245 3261 1.213537 CACGCAAATCCCCTGCTTG 59.786 57.895 0.00 0.00 37.67 4.01
3246 3262 1.228552 ACGCAAATCCCCTGCTTGT 60.229 52.632 0.00 0.00 37.67 3.16
3247 3263 0.827507 ACGCAAATCCCCTGCTTGTT 60.828 50.000 0.00 0.00 37.67 2.83
3248 3264 0.109132 CGCAAATCCCCTGCTTGTTC 60.109 55.000 0.00 0.00 37.67 3.18
3249 3265 0.968405 GCAAATCCCCTGCTTGTTCA 59.032 50.000 0.00 0.00 36.84 3.18
3250 3266 1.551883 GCAAATCCCCTGCTTGTTCAT 59.448 47.619 0.00 0.00 36.84 2.57
3251 3267 2.417787 GCAAATCCCCTGCTTGTTCATC 60.418 50.000 0.00 0.00 36.84 2.92
3252 3268 1.755179 AATCCCCTGCTTGTTCATCG 58.245 50.000 0.00 0.00 0.00 3.84
3253 3269 0.620556 ATCCCCTGCTTGTTCATCGT 59.379 50.000 0.00 0.00 0.00 3.73
3254 3270 0.400213 TCCCCTGCTTGTTCATCGTT 59.600 50.000 0.00 0.00 0.00 3.85
3255 3271 0.804989 CCCCTGCTTGTTCATCGTTC 59.195 55.000 0.00 0.00 0.00 3.95
3256 3272 0.804989 CCCTGCTTGTTCATCGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
3257 3273 0.804989 CCTGCTTGTTCATCGTTCCC 59.195 55.000 0.00 0.00 0.00 3.97
3258 3274 0.804989 CTGCTTGTTCATCGTTCCCC 59.195 55.000 0.00 0.00 0.00 4.81
3259 3275 0.608035 TGCTTGTTCATCGTTCCCCC 60.608 55.000 0.00 0.00 0.00 5.40
3260 3276 1.644786 GCTTGTTCATCGTTCCCCCG 61.645 60.000 0.00 0.00 0.00 5.73
3261 3277 1.644786 CTTGTTCATCGTTCCCCCGC 61.645 60.000 0.00 0.00 0.00 6.13
3262 3278 3.192922 GTTCATCGTTCCCCCGCG 61.193 66.667 0.00 0.00 0.00 6.46
3263 3279 4.460683 TTCATCGTTCCCCCGCGG 62.461 66.667 21.04 21.04 0.00 6.46
3269 3285 4.717313 GTTCCCCCGCGGCTTTCT 62.717 66.667 22.85 0.00 0.00 2.52
3270 3286 4.715523 TTCCCCCGCGGCTTTCTG 62.716 66.667 22.85 4.41 0.00 3.02
3274 3290 3.804193 CCCGCGGCTTTCTGCTTC 61.804 66.667 22.85 0.00 42.40 3.86
3275 3291 2.743928 CCGCGGCTTTCTGCTTCT 60.744 61.111 14.67 0.00 42.40 2.85
3276 3292 2.477845 CGCGGCTTTCTGCTTCTG 59.522 61.111 0.00 0.00 42.40 3.02
3277 3293 2.177778 GCGGCTTTCTGCTTCTGC 59.822 61.111 0.00 0.00 41.36 4.26
3278 3294 2.873288 CGGCTTTCTGCTTCTGCC 59.127 61.111 0.00 0.00 42.39 4.85
3279 3295 1.673665 CGGCTTTCTGCTTCTGCCT 60.674 57.895 0.00 0.00 41.25 4.75
3280 3296 1.642952 CGGCTTTCTGCTTCTGCCTC 61.643 60.000 0.00 0.00 41.25 4.70
3281 3297 1.311651 GGCTTTCTGCTTCTGCCTCC 61.312 60.000 0.00 0.00 42.39 4.30
3282 3298 0.607489 GCTTTCTGCTTCTGCCTCCA 60.607 55.000 0.00 0.00 38.71 3.86
3283 3299 1.954258 GCTTTCTGCTTCTGCCTCCAT 60.954 52.381 0.00 0.00 38.71 3.41
3284 3300 1.743958 CTTTCTGCTTCTGCCTCCATG 59.256 52.381 0.00 0.00 38.71 3.66
3285 3301 0.034767 TTCTGCTTCTGCCTCCATGG 60.035 55.000 4.97 4.97 38.71 3.66
3316 3332 4.801624 CGCAGCTCGCTGGCTACA 62.802 66.667 19.42 0.00 43.77 2.74
3317 3333 2.202987 GCAGCTCGCTGGCTACAT 60.203 61.111 19.42 0.00 43.77 2.29
3318 3334 2.532256 GCAGCTCGCTGGCTACATG 61.532 63.158 19.42 0.00 43.77 3.21
3319 3335 1.886313 CAGCTCGCTGGCTACATGG 60.886 63.158 10.98 0.00 41.00 3.66
3320 3336 2.187946 GCTCGCTGGCTACATGGT 59.812 61.111 0.00 0.00 0.00 3.55
3321 3337 1.450312 GCTCGCTGGCTACATGGTT 60.450 57.895 0.00 0.00 0.00 3.67
3322 3338 1.709147 GCTCGCTGGCTACATGGTTG 61.709 60.000 0.00 0.00 0.00 3.77
3323 3339 1.709147 CTCGCTGGCTACATGGTTGC 61.709 60.000 0.00 0.00 33.89 4.17
3324 3340 2.039974 CGCTGGCTACATGGTTGCA 61.040 57.895 0.00 0.00 36.13 4.08
3325 3341 1.378882 CGCTGGCTACATGGTTGCAT 61.379 55.000 0.00 0.00 36.13 3.96
3326 3342 0.383231 GCTGGCTACATGGTTGCATC 59.617 55.000 0.00 0.00 36.13 3.91
3327 3343 0.659427 CTGGCTACATGGTTGCATCG 59.341 55.000 0.00 0.00 36.13 3.84
3328 3344 1.356624 GGCTACATGGTTGCATCGC 59.643 57.895 0.00 0.00 36.13 4.58
3329 3345 1.097547 GGCTACATGGTTGCATCGCT 61.098 55.000 0.00 0.00 36.13 4.93
3330 3346 0.305922 GCTACATGGTTGCATCGCTC 59.694 55.000 0.00 0.00 34.70 5.03
3331 3347 0.578683 CTACATGGTTGCATCGCTCG 59.421 55.000 0.00 0.00 0.00 5.03
3332 3348 0.108377 TACATGGTTGCATCGCTCGT 60.108 50.000 0.00 0.00 0.00 4.18
3333 3349 1.061411 CATGGTTGCATCGCTCGTG 59.939 57.895 0.00 0.00 0.00 4.35
3334 3350 2.753966 ATGGTTGCATCGCTCGTGC 61.754 57.895 0.00 0.00 42.81 5.34
3345 3361 4.907034 CTCGTGCGCCGCGTCTAT 62.907 66.667 15.34 0.00 38.57 1.98
3346 3362 4.899687 TCGTGCGCCGCGTCTATC 62.900 66.667 15.34 0.00 38.57 2.08
3357 3373 2.654802 CGTCTATCCGCCCCTATGT 58.345 57.895 0.00 0.00 0.00 2.29
3358 3374 1.830279 CGTCTATCCGCCCCTATGTA 58.170 55.000 0.00 0.00 0.00 2.29
3359 3375 1.743958 CGTCTATCCGCCCCTATGTAG 59.256 57.143 0.00 0.00 0.00 2.74
3360 3376 1.477295 GTCTATCCGCCCCTATGTAGC 59.523 57.143 0.00 0.00 0.00 3.58
3361 3377 1.076513 TCTATCCGCCCCTATGTAGCA 59.923 52.381 0.00 0.00 0.00 3.49
3362 3378 1.899814 CTATCCGCCCCTATGTAGCAA 59.100 52.381 0.00 0.00 0.00 3.91
3363 3379 1.136828 ATCCGCCCCTATGTAGCAAA 58.863 50.000 0.00 0.00 0.00 3.68
3364 3380 0.913205 TCCGCCCCTATGTAGCAAAA 59.087 50.000 0.00 0.00 0.00 2.44
3365 3381 1.282447 TCCGCCCCTATGTAGCAAAAA 59.718 47.619 0.00 0.00 0.00 1.94
3366 3382 1.676006 CCGCCCCTATGTAGCAAAAAG 59.324 52.381 0.00 0.00 0.00 2.27
3367 3383 1.065551 CGCCCCTATGTAGCAAAAAGC 59.934 52.381 0.00 0.00 46.19 3.51
3382 3398 3.727146 AGCGTTGTCGGTTCCAAC 58.273 55.556 0.00 0.00 45.64 3.77
3383 3399 1.153329 AGCGTTGTCGGTTCCAACA 60.153 52.632 0.00 0.00 45.64 3.33
3384 3400 0.745128 AGCGTTGTCGGTTCCAACAA 60.745 50.000 0.00 0.00 45.64 2.83
3385 3401 0.099082 GCGTTGTCGGTTCCAACAAA 59.901 50.000 0.00 0.00 41.76 2.83
3386 3402 1.467713 GCGTTGTCGGTTCCAACAAAA 60.468 47.619 0.00 0.00 41.76 2.44
3387 3403 2.178783 CGTTGTCGGTTCCAACAAAAC 58.821 47.619 0.00 0.00 41.76 2.43
3388 3404 2.414293 CGTTGTCGGTTCCAACAAAACA 60.414 45.455 0.00 0.00 41.76 2.83
3389 3405 3.175929 GTTGTCGGTTCCAACAAAACAG 58.824 45.455 0.00 0.00 41.40 3.16
3390 3406 1.133407 TGTCGGTTCCAACAAAACAGC 59.867 47.619 0.00 0.00 0.00 4.40
3391 3407 0.741915 TCGGTTCCAACAAAACAGCC 59.258 50.000 0.00 0.00 0.00 4.85
3392 3408 0.249280 CGGTTCCAACAAAACAGCCC 60.249 55.000 0.00 0.00 0.00 5.19
3393 3409 0.249280 GGTTCCAACAAAACAGCCCG 60.249 55.000 0.00 0.00 0.00 6.13
3394 3410 0.874175 GTTCCAACAAAACAGCCCGC 60.874 55.000 0.00 0.00 0.00 6.13
3395 3411 1.323271 TTCCAACAAAACAGCCCGCA 61.323 50.000 0.00 0.00 0.00 5.69
3396 3412 1.300080 CCAACAAAACAGCCCGCAG 60.300 57.895 0.00 0.00 0.00 5.18
3409 3425 3.499737 CGCAGGTCGCAACATCCC 61.500 66.667 0.00 0.00 42.60 3.85
3410 3426 2.045926 GCAGGTCGCAACATCCCT 60.046 61.111 0.00 0.00 41.79 4.20
3411 3427 2.109126 GCAGGTCGCAACATCCCTC 61.109 63.158 0.00 0.00 41.79 4.30
3412 3428 1.811266 CAGGTCGCAACATCCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
3413 3429 3.195698 GGTCGCAACATCCCTCGC 61.196 66.667 0.00 0.00 0.00 5.03
3414 3430 2.125512 GTCGCAACATCCCTCGCT 60.126 61.111 0.00 0.00 0.00 4.93
3415 3431 1.141019 GTCGCAACATCCCTCGCTA 59.859 57.895 0.00 0.00 0.00 4.26
3416 3432 0.872021 GTCGCAACATCCCTCGCTAG 60.872 60.000 0.00 0.00 0.00 3.42
3417 3433 1.141881 CGCAACATCCCTCGCTAGT 59.858 57.895 0.00 0.00 0.00 2.57
3418 3434 0.460284 CGCAACATCCCTCGCTAGTT 60.460 55.000 0.00 0.00 0.00 2.24
3419 3435 1.291132 GCAACATCCCTCGCTAGTTC 58.709 55.000 0.00 0.00 0.00 3.01
3420 3436 1.560923 CAACATCCCTCGCTAGTTCG 58.439 55.000 0.00 0.00 0.00 3.95
3421 3437 1.135083 CAACATCCCTCGCTAGTTCGT 60.135 52.381 0.00 0.00 0.00 3.85
3422 3438 1.183549 ACATCCCTCGCTAGTTCGTT 58.816 50.000 0.00 0.00 0.00 3.85
3423 3439 1.135083 ACATCCCTCGCTAGTTCGTTG 60.135 52.381 0.00 0.00 0.00 4.10
3424 3440 0.179108 ATCCCTCGCTAGTTCGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
3425 3441 1.215647 CCCTCGCTAGTTCGTTGCT 59.784 57.895 0.00 0.00 0.00 3.91
3426 3442 0.802607 CCCTCGCTAGTTCGTTGCTC 60.803 60.000 0.00 0.00 0.00 4.26
3427 3443 0.802607 CCTCGCTAGTTCGTTGCTCC 60.803 60.000 0.00 0.00 0.00 4.70
3428 3444 0.171455 CTCGCTAGTTCGTTGCTCCT 59.829 55.000 0.00 0.00 0.00 3.69
3429 3445 0.109272 TCGCTAGTTCGTTGCTCCTG 60.109 55.000 0.00 0.00 0.00 3.86
3430 3446 0.388649 CGCTAGTTCGTTGCTCCTGT 60.389 55.000 0.00 0.00 0.00 4.00
3431 3447 1.351153 GCTAGTTCGTTGCTCCTGTC 58.649 55.000 0.00 0.00 0.00 3.51
3432 3448 1.336887 GCTAGTTCGTTGCTCCTGTCA 60.337 52.381 0.00 0.00 0.00 3.58
3433 3449 2.675317 GCTAGTTCGTTGCTCCTGTCAT 60.675 50.000 0.00 0.00 0.00 3.06
3434 3450 3.428999 GCTAGTTCGTTGCTCCTGTCATA 60.429 47.826 0.00 0.00 0.00 2.15
3435 3451 3.238108 AGTTCGTTGCTCCTGTCATAG 57.762 47.619 0.00 0.00 0.00 2.23
3436 3452 2.563179 AGTTCGTTGCTCCTGTCATAGT 59.437 45.455 0.00 0.00 0.00 2.12
3437 3453 2.924290 GTTCGTTGCTCCTGTCATAGTC 59.076 50.000 0.00 0.00 0.00 2.59
3438 3454 1.132453 TCGTTGCTCCTGTCATAGTCG 59.868 52.381 0.00 0.00 0.00 4.18
3439 3455 1.135373 CGTTGCTCCTGTCATAGTCGT 60.135 52.381 0.00 0.00 0.00 4.34
3440 3456 2.531206 GTTGCTCCTGTCATAGTCGTC 58.469 52.381 0.00 0.00 0.00 4.20
3441 3457 0.733150 TGCTCCTGTCATAGTCGTCG 59.267 55.000 0.00 0.00 0.00 5.12
3442 3458 0.733729 GCTCCTGTCATAGTCGTCGT 59.266 55.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.282817 TTGTTCAACGACGTGAGGTG 58.717 50.000 0.00 0.00 0.00 4.00
3 4 1.398451 GCATTGTTCAACGACGTGAGG 60.398 52.381 0.00 0.00 0.00 3.86
4 5 1.718361 CGCATTGTTCAACGACGTGAG 60.718 52.381 0.00 0.00 0.00 3.51
6 7 0.231024 TCGCATTGTTCAACGACGTG 59.769 50.000 0.00 0.00 0.00 4.49
7 8 1.144969 ATCGCATTGTTCAACGACGT 58.855 45.000 0.00 0.00 37.37 4.34
8 9 3.569304 ATATCGCATTGTTCAACGACG 57.431 42.857 0.00 0.00 37.37 5.12
9 10 6.623743 GTCTTTATATCGCATTGTTCAACGAC 59.376 38.462 0.00 0.00 37.37 4.34
10 11 6.507299 CGTCTTTATATCGCATTGTTCAACGA 60.507 38.462 0.00 0.00 39.11 3.85
11 12 5.611596 CGTCTTTATATCGCATTGTTCAACG 59.388 40.000 0.00 0.00 0.00 4.10
12 13 5.901884 CCGTCTTTATATCGCATTGTTCAAC 59.098 40.000 0.00 0.00 0.00 3.18
13 14 5.813157 TCCGTCTTTATATCGCATTGTTCAA 59.187 36.000 0.00 0.00 0.00 2.69
14 15 5.353111 TCCGTCTTTATATCGCATTGTTCA 58.647 37.500 0.00 0.00 0.00 3.18
15 16 5.900339 TCCGTCTTTATATCGCATTGTTC 57.100 39.130 0.00 0.00 0.00 3.18
16 17 8.443160 CAATATCCGTCTTTATATCGCATTGTT 58.557 33.333 0.00 0.00 0.00 2.83
17 18 7.817478 TCAATATCCGTCTTTATATCGCATTGT 59.183 33.333 0.00 0.00 0.00 2.71
18 19 8.185003 TCAATATCCGTCTTTATATCGCATTG 57.815 34.615 0.00 0.00 0.00 2.82
19 20 8.771920 TTCAATATCCGTCTTTATATCGCATT 57.228 30.769 0.00 0.00 0.00 3.56
20 21 8.820933 CATTCAATATCCGTCTTTATATCGCAT 58.179 33.333 0.00 0.00 0.00 4.73
21 22 7.277760 CCATTCAATATCCGTCTTTATATCGCA 59.722 37.037 0.00 0.00 0.00 5.10
22 23 7.621991 CCATTCAATATCCGTCTTTATATCGC 58.378 38.462 0.00 0.00 0.00 4.58
23 24 7.254455 GGCCATTCAATATCCGTCTTTATATCG 60.254 40.741 0.00 0.00 0.00 2.92
24 25 7.552687 TGGCCATTCAATATCCGTCTTTATATC 59.447 37.037 0.00 0.00 0.00 1.63
25 26 7.402054 TGGCCATTCAATATCCGTCTTTATAT 58.598 34.615 0.00 0.00 0.00 0.86
26 27 6.774673 TGGCCATTCAATATCCGTCTTTATA 58.225 36.000 0.00 0.00 0.00 0.98
27 28 5.630121 TGGCCATTCAATATCCGTCTTTAT 58.370 37.500 0.00 0.00 0.00 1.40
28 29 5.042463 TGGCCATTCAATATCCGTCTTTA 57.958 39.130 0.00 0.00 0.00 1.85
29 30 3.897239 TGGCCATTCAATATCCGTCTTT 58.103 40.909 0.00 0.00 0.00 2.52
30 31 3.576078 TGGCCATTCAATATCCGTCTT 57.424 42.857 0.00 0.00 0.00 3.01
31 32 3.480470 CTTGGCCATTCAATATCCGTCT 58.520 45.455 6.09 0.00 0.00 4.18
32 33 2.554032 CCTTGGCCATTCAATATCCGTC 59.446 50.000 6.09 0.00 0.00 4.79
33 34 2.586425 CCTTGGCCATTCAATATCCGT 58.414 47.619 6.09 0.00 0.00 4.69
34 35 1.888512 CCCTTGGCCATTCAATATCCG 59.111 52.381 6.09 0.00 0.00 4.18
35 36 2.629617 CACCCTTGGCCATTCAATATCC 59.370 50.000 6.09 0.00 0.00 2.59
36 37 3.299503 ACACCCTTGGCCATTCAATATC 58.700 45.455 6.09 0.00 0.00 1.63
37 38 3.052642 AGACACCCTTGGCCATTCAATAT 60.053 43.478 6.09 0.00 0.00 1.28
38 39 2.311542 AGACACCCTTGGCCATTCAATA 59.688 45.455 6.09 0.00 0.00 1.90
39 40 1.077663 AGACACCCTTGGCCATTCAAT 59.922 47.619 6.09 0.00 0.00 2.57
40 41 0.482446 AGACACCCTTGGCCATTCAA 59.518 50.000 6.09 0.00 0.00 2.69
41 42 0.038166 GAGACACCCTTGGCCATTCA 59.962 55.000 6.09 0.00 0.00 2.57
42 43 0.038166 TGAGACACCCTTGGCCATTC 59.962 55.000 6.09 0.00 0.00 2.67
43 44 0.251341 GTGAGACACCCTTGGCCATT 60.251 55.000 6.09 0.00 0.00 3.16
44 45 1.380302 GTGAGACACCCTTGGCCAT 59.620 57.895 6.09 0.00 0.00 4.40
45 46 2.836154 GTGAGACACCCTTGGCCA 59.164 61.111 0.00 0.00 0.00 5.36
56 57 1.202428 GGATACTTGGCTCGGTGAGAC 60.202 57.143 0.00 0.00 38.37 3.36
57 58 1.112113 GGATACTTGGCTCGGTGAGA 58.888 55.000 0.00 0.00 0.00 3.27
58 59 3.669354 GGATACTTGGCTCGGTGAG 57.331 57.895 0.00 0.00 0.00 3.51
71 72 3.890147 AGTACACGATTCTGGGAGGATAC 59.110 47.826 0.00 0.00 0.00 2.24
72 73 4.180377 AGTACACGATTCTGGGAGGATA 57.820 45.455 0.00 0.00 0.00 2.59
73 74 3.033659 AGTACACGATTCTGGGAGGAT 57.966 47.619 0.00 0.00 0.00 3.24
74 75 2.526888 AGTACACGATTCTGGGAGGA 57.473 50.000 0.00 0.00 0.00 3.71
75 76 2.034812 GCTAGTACACGATTCTGGGAGG 59.965 54.545 0.00 0.00 0.00 4.30
76 77 2.287069 CGCTAGTACACGATTCTGGGAG 60.287 54.545 0.00 0.00 0.00 4.30
77 78 1.674441 CGCTAGTACACGATTCTGGGA 59.326 52.381 0.00 0.00 0.00 4.37
78 79 1.864435 GCGCTAGTACACGATTCTGGG 60.864 57.143 0.00 0.00 0.00 4.45
79 80 1.478137 GCGCTAGTACACGATTCTGG 58.522 55.000 0.00 0.00 0.00 3.86
80 81 1.478137 GGCGCTAGTACACGATTCTG 58.522 55.000 7.64 0.00 0.00 3.02
81 82 0.029035 CGGCGCTAGTACACGATTCT 59.971 55.000 7.64 0.00 0.00 2.40
82 83 0.248377 ACGGCGCTAGTACACGATTC 60.248 55.000 6.90 0.00 0.00 2.52
83 84 0.171903 AACGGCGCTAGTACACGATT 59.828 50.000 6.90 0.00 0.00 3.34
84 85 0.524816 CAACGGCGCTAGTACACGAT 60.525 55.000 6.90 0.00 0.00 3.73
85 86 1.154169 CAACGGCGCTAGTACACGA 60.154 57.895 6.90 0.00 0.00 4.35
86 87 2.785105 GCAACGGCGCTAGTACACG 61.785 63.158 6.90 2.29 0.00 4.49
87 88 2.450345 GGCAACGGCGCTAGTACAC 61.450 63.158 6.90 1.49 42.47 2.90
88 89 2.125832 GGCAACGGCGCTAGTACA 60.126 61.111 6.90 0.00 42.47 2.90
89 90 1.293267 TTTGGCAACGGCGCTAGTAC 61.293 55.000 6.90 4.31 42.47 2.73
90 91 0.603172 TTTTGGCAACGGCGCTAGTA 60.603 50.000 6.90 0.00 42.47 1.82
91 92 1.241315 ATTTTGGCAACGGCGCTAGT 61.241 50.000 6.90 5.12 42.47 2.57
92 93 0.109319 AATTTTGGCAACGGCGCTAG 60.109 50.000 6.90 4.36 42.47 3.42
93 94 1.135632 GTAATTTTGGCAACGGCGCTA 60.136 47.619 6.90 0.00 42.47 4.26
94 95 0.388006 GTAATTTTGGCAACGGCGCT 60.388 50.000 6.90 0.00 42.47 5.92
95 96 1.348538 GGTAATTTTGGCAACGGCGC 61.349 55.000 6.90 0.00 42.47 6.53
96 97 0.039074 TGGTAATTTTGGCAACGGCG 60.039 50.000 4.80 4.80 42.47 6.46
97 98 1.000394 AGTGGTAATTTTGGCAACGGC 60.000 47.619 0.00 0.00 42.51 5.68
98 99 3.672241 GCTAGTGGTAATTTTGGCAACGG 60.672 47.826 0.00 0.00 42.51 4.44
99 100 3.057876 TGCTAGTGGTAATTTTGGCAACG 60.058 43.478 0.00 0.00 42.51 4.10
100 101 4.513198 TGCTAGTGGTAATTTTGGCAAC 57.487 40.909 0.00 0.00 0.00 4.17
101 102 5.949354 AGTATGCTAGTGGTAATTTTGGCAA 59.051 36.000 0.00 0.00 32.28 4.52
102 103 5.505780 AGTATGCTAGTGGTAATTTTGGCA 58.494 37.500 0.00 0.00 0.00 4.92
103 104 6.293462 GCTAGTATGCTAGTGGTAATTTTGGC 60.293 42.308 17.77 0.00 44.93 4.52
104 105 6.204882 GGCTAGTATGCTAGTGGTAATTTTGG 59.795 42.308 17.77 0.00 44.93 3.28
105 106 6.765989 TGGCTAGTATGCTAGTGGTAATTTTG 59.234 38.462 17.77 0.00 44.93 2.44
106 107 6.895782 TGGCTAGTATGCTAGTGGTAATTTT 58.104 36.000 17.77 0.00 44.93 1.82
107 108 6.494666 TGGCTAGTATGCTAGTGGTAATTT 57.505 37.500 17.77 0.00 44.93 1.82
125 126 1.341581 GGGCCCAAAAGTGTATGGCTA 60.342 52.381 19.95 0.00 41.84 3.93
130 131 2.390225 TGTTGGGCCCAAAAGTGTAT 57.610 45.000 38.70 0.00 37.70 2.29
161 162 7.816995 TGCATATTACCAACCAACTTCATTTTC 59.183 33.333 0.00 0.00 0.00 2.29
166 167 6.849085 ATTGCATATTACCAACCAACTTCA 57.151 33.333 0.00 0.00 0.00 3.02
333 335 6.707599 AAGCAGACGTAAGAACAAAGATAC 57.292 37.500 0.00 0.00 43.62 2.24
389 391 7.270757 TGAACATTAGTGTAGCACATGTTTT 57.729 32.000 14.68 0.00 39.42 2.43
479 481 7.493367 AGTACACATGCTAAGATTAGGACTTC 58.507 38.462 0.00 0.00 33.85 3.01
549 551 1.541310 CCTTGTAGTCGAGGGGTGCA 61.541 60.000 0.00 0.00 40.63 4.57
550 552 1.218316 CCTTGTAGTCGAGGGGTGC 59.782 63.158 0.00 0.00 40.63 5.01
585 587 1.994779 GCCGGCAAATCTTCAATTGTG 59.005 47.619 24.80 0.22 0.00 3.33
632 634 6.398234 ACTCACACACATACATCCTATCTC 57.602 41.667 0.00 0.00 0.00 2.75
633 635 6.798427 AACTCACACACATACATCCTATCT 57.202 37.500 0.00 0.00 0.00 1.98
640 642 9.330063 CATCCTTATAAACTCACACACATACAT 57.670 33.333 0.00 0.00 0.00 2.29
666 668 1.282817 TACGGCATGCACGTACATTC 58.717 50.000 26.83 6.13 44.93 2.67
676 678 0.798776 GCCATGATAGTACGGCATGC 59.201 55.000 9.90 9.90 44.25 4.06
681 683 5.784177 AGTAAATGAGCCATGATAGTACGG 58.216 41.667 0.00 0.00 0.00 4.02
791 793 3.120792 TCTCAAACGAACGTTTCTCTGG 58.879 45.455 19.82 10.48 45.32 3.86
794 796 5.404667 ACCTTATCTCAAACGAACGTTTCTC 59.595 40.000 19.82 0.00 45.32 2.87
829 831 2.710377 ACTGTGAAAGTGTCAACTGCA 58.290 42.857 0.00 0.00 38.23 4.41
863 865 7.595311 TCGTAATCGTGTAGTACTTCTAACA 57.405 36.000 0.00 0.00 38.33 2.41
1107 1114 2.511600 GGCACAATCTCGGGTCCG 60.512 66.667 2.52 2.52 41.35 4.79
1258 1265 5.241728 AGGTTGCCTTTGTGATTCTTAAGTC 59.758 40.000 1.63 0.00 0.00 3.01
1719 1726 3.244911 CCGAATAGTAGGATGGCCCAATT 60.245 47.826 0.00 0.00 37.41 2.32
1921 1928 5.078411 TCTTTAGAGAGAGTGATGCCAAC 57.922 43.478 0.00 0.00 0.00 3.77
1923 1930 5.207354 AGATCTTTAGAGAGAGTGATGCCA 58.793 41.667 0.00 0.00 34.85 4.92
1954 1961 0.035317 TTCAGTGCGTCTCCAGCAAT 59.965 50.000 0.00 0.00 46.97 3.56
2154 2161 2.514803 AGTTTGAGGCCATGTTGTACC 58.485 47.619 5.01 0.00 0.00 3.34
2236 2243 2.354704 CCAACTCATACCACACCGATGT 60.355 50.000 0.00 0.00 40.80 3.06
2369 2376 2.284625 AGGGTCCATCCGCACTGA 60.285 61.111 0.00 0.00 37.00 3.41
2533 2540 3.117360 GGAATCCCCCATCACTTCATCTT 60.117 47.826 0.00 0.00 0.00 2.40
2534 2541 2.444766 GGAATCCCCCATCACTTCATCT 59.555 50.000 0.00 0.00 0.00 2.90
2542 2550 1.073763 CGCTAATGGAATCCCCCATCA 59.926 52.381 0.00 0.00 45.69 3.07
2621 2630 6.488006 CCACATAGGAAAGTAGGGATTGATTG 59.512 42.308 0.00 0.00 41.22 2.67
2638 2647 4.122776 GCTCATCTGTACAACCACATAGG 58.877 47.826 0.00 0.00 45.67 2.57
2666 2675 2.985896 GGATGTCGTCCCTCAATTCAA 58.014 47.619 0.00 0.00 41.50 2.69
2708 2717 7.278875 AGAAAATTTACCAATTTGAAGTGCCA 58.721 30.769 0.00 0.00 41.02 4.92
2709 2718 7.728847 AGAAAATTTACCAATTTGAAGTGCC 57.271 32.000 0.00 0.00 41.02 5.01
2719 2728 6.718294 ACGAGTCCCTAGAAAATTTACCAAT 58.282 36.000 0.00 0.00 0.00 3.16
2732 2741 2.095161 GTCTCACACAACGAGTCCCTAG 60.095 54.545 0.00 0.00 0.00 3.02
2736 2745 2.061773 CATGTCTCACACAACGAGTCC 58.938 52.381 0.00 0.00 38.97 3.85
2743 2752 4.406648 AGAAGTCACATGTCTCACACAA 57.593 40.909 0.00 0.00 38.97 3.33
2767 2776 4.503991 CCCTATCTGCCAAGAATACAGGTC 60.504 50.000 0.00 0.00 35.59 3.85
2782 2791 6.872020 CCATAACGTATACCAAACCCTATCTG 59.128 42.308 0.00 0.00 0.00 2.90
2811 2820 1.803519 CTCTGCGTTCAGTCGGCTC 60.804 63.158 0.00 0.00 41.10 4.70
2815 2831 0.455295 GTCCTCTCTGCGTTCAGTCG 60.455 60.000 0.00 0.00 41.10 4.18
2820 2836 3.449632 GGATTTAGTCCTCTCTGCGTTC 58.550 50.000 0.00 0.00 44.16 3.95
2900 2916 2.095919 GGATGCACTTACAAACGGTGAC 60.096 50.000 0.00 0.00 33.32 3.67
2905 2921 4.495422 ACTCTAGGATGCACTTACAAACG 58.505 43.478 0.00 0.00 0.00 3.60
2910 2926 5.279056 GGTCCATACTCTAGGATGCACTTAC 60.279 48.000 0.00 0.00 36.11 2.34
2935 2951 7.076983 GGCATACAAAAATTGAAACACCATTG 58.923 34.615 0.00 0.00 0.00 2.82
2945 2961 1.201181 AGCGCGGCATACAAAAATTGA 59.799 42.857 8.83 0.00 0.00 2.57
2957 2973 2.822255 GATAACCCAAGCGCGGCA 60.822 61.111 8.83 0.00 0.00 5.69
2961 2977 0.519961 AAACACGATAACCCAAGCGC 59.480 50.000 0.00 0.00 0.00 5.92
3009 3025 0.882042 CGATACAGATGTGCAGGGGC 60.882 60.000 0.00 0.00 41.68 5.80
3011 3027 2.315925 AACGATACAGATGTGCAGGG 57.684 50.000 0.00 0.00 0.00 4.45
3016 3032 2.030457 GGCCGAAAACGATACAGATGTG 59.970 50.000 0.00 0.00 0.00 3.21
3019 3035 1.567504 CGGCCGAAAACGATACAGAT 58.432 50.000 24.07 0.00 0.00 2.90
3022 3038 0.458889 CTCCGGCCGAAAACGATACA 60.459 55.000 30.73 0.00 0.00 2.29
3023 3039 0.179129 TCTCCGGCCGAAAACGATAC 60.179 55.000 30.73 0.00 0.00 2.24
3024 3040 0.748450 ATCTCCGGCCGAAAACGATA 59.252 50.000 30.73 7.88 0.00 2.92
3032 3048 0.110678 ATAGAGTGATCTCCGGCCGA 59.889 55.000 30.73 12.25 41.26 5.54
3035 3051 1.273886 GGGAATAGAGTGATCTCCGGC 59.726 57.143 0.00 0.00 41.26 6.13
3082 3098 9.430399 AGTACTGCCCTAAATATAACTCTAACA 57.570 33.333 0.00 0.00 0.00 2.41
3085 3101 9.750783 CCTAGTACTGCCCTAAATATAACTCTA 57.249 37.037 5.39 0.00 0.00 2.43
3086 3102 7.178805 GCCTAGTACTGCCCTAAATATAACTCT 59.821 40.741 5.39 0.00 0.00 3.24
3087 3103 7.321908 GCCTAGTACTGCCCTAAATATAACTC 58.678 42.308 5.39 0.00 0.00 3.01
3088 3104 6.071503 CGCCTAGTACTGCCCTAAATATAACT 60.072 42.308 5.39 0.00 0.00 2.24
3089 3105 6.098017 CGCCTAGTACTGCCCTAAATATAAC 58.902 44.000 5.39 0.00 0.00 1.89
3090 3106 5.337009 GCGCCTAGTACTGCCCTAAATATAA 60.337 44.000 5.39 0.00 0.00 0.98
3091 3107 4.159135 GCGCCTAGTACTGCCCTAAATATA 59.841 45.833 5.39 0.00 0.00 0.86
3092 3108 3.056035 GCGCCTAGTACTGCCCTAAATAT 60.056 47.826 5.39 0.00 0.00 1.28
3093 3109 2.298163 GCGCCTAGTACTGCCCTAAATA 59.702 50.000 5.39 0.00 0.00 1.40
3094 3110 1.070289 GCGCCTAGTACTGCCCTAAAT 59.930 52.381 5.39 0.00 0.00 1.40
3095 3111 0.462789 GCGCCTAGTACTGCCCTAAA 59.537 55.000 5.39 0.00 0.00 1.85
3096 3112 1.397390 GGCGCCTAGTACTGCCCTAA 61.397 60.000 22.15 0.00 41.70 2.69
3097 3113 1.831286 GGCGCCTAGTACTGCCCTA 60.831 63.158 22.15 0.00 41.70 3.53
3098 3114 3.155167 GGCGCCTAGTACTGCCCT 61.155 66.667 22.15 0.00 41.70 5.19
3101 3117 1.227002 GACTGGCGCCTAGTACTGC 60.227 63.158 29.70 12.82 0.00 4.40
3102 3118 1.064296 CGACTGGCGCCTAGTACTG 59.936 63.158 29.70 16.79 0.00 2.74
3103 3119 1.077930 TCGACTGGCGCCTAGTACT 60.078 57.895 29.70 7.55 40.61 2.73
3104 3120 1.063811 GTCGACTGGCGCCTAGTAC 59.936 63.158 29.70 19.20 40.61 2.73
3105 3121 2.117156 GGTCGACTGGCGCCTAGTA 61.117 63.158 29.70 12.13 40.61 1.82
3106 3122 3.450115 GGTCGACTGGCGCCTAGT 61.450 66.667 29.70 27.06 40.61 2.57
3107 3123 4.554363 CGGTCGACTGGCGCCTAG 62.554 72.222 29.70 24.04 40.61 3.02
3114 3130 3.622060 ATTTGGGCCGGTCGACTGG 62.622 63.158 34.82 34.82 45.30 4.00
3115 3131 1.241315 AAATTTGGGCCGGTCGACTG 61.241 55.000 17.81 17.81 0.00 3.51
3116 3132 1.074248 AAATTTGGGCCGGTCGACT 59.926 52.632 16.46 0.00 0.00 4.18
3117 3133 1.211709 CAAATTTGGGCCGGTCGAC 59.788 57.895 7.13 7.13 0.00 4.20
3118 3134 1.974343 CCAAATTTGGGCCGGTCGA 60.974 57.895 26.87 0.00 44.70 4.20
3119 3135 2.571231 CCAAATTTGGGCCGGTCG 59.429 61.111 26.87 1.10 44.70 4.79
3128 3144 1.291906 GGTGACCGGCCCAAATTTG 59.708 57.895 11.40 11.40 0.00 2.32
3129 3145 2.272447 CGGTGACCGGCCCAAATTT 61.272 57.895 17.80 0.00 44.15 1.82
3130 3146 2.675075 CGGTGACCGGCCCAAATT 60.675 61.111 17.80 0.00 44.15 1.82
3158 3174 4.201679 TCCAGGGCGCACGTATCG 62.202 66.667 10.83 5.18 0.00 2.92
3159 3175 2.585247 GTCCAGGGCGCACGTATC 60.585 66.667 10.83 0.00 0.00 2.24
3160 3176 4.157120 GGTCCAGGGCGCACGTAT 62.157 66.667 10.83 0.00 0.00 3.06
3163 3179 4.155733 TATGGTCCAGGGCGCACG 62.156 66.667 10.83 1.33 0.00 5.34
3164 3180 2.203070 CTATGGTCCAGGGCGCAC 60.203 66.667 10.83 5.15 0.00 5.34
3165 3181 3.479203 CCTATGGTCCAGGGCGCA 61.479 66.667 10.83 0.00 0.00 6.09
3166 3182 2.056906 AATCCTATGGTCCAGGGCGC 62.057 60.000 0.00 0.00 33.66 6.53
3167 3183 0.250467 CAATCCTATGGTCCAGGGCG 60.250 60.000 0.00 0.00 33.66 6.13
3168 3184 0.538287 GCAATCCTATGGTCCAGGGC 60.538 60.000 0.00 0.00 33.66 5.19
3169 3185 0.111253 GGCAATCCTATGGTCCAGGG 59.889 60.000 0.00 2.40 33.66 4.45
3170 3186 1.072965 GAGGCAATCCTATGGTCCAGG 59.927 57.143 0.00 0.00 44.46 4.45
3171 3187 1.270518 CGAGGCAATCCTATGGTCCAG 60.271 57.143 0.00 0.00 44.46 3.86
3172 3188 0.758734 CGAGGCAATCCTATGGTCCA 59.241 55.000 0.00 0.00 44.46 4.02
3173 3189 0.603975 GCGAGGCAATCCTATGGTCC 60.604 60.000 0.00 0.00 44.46 4.46
3174 3190 0.106708 TGCGAGGCAATCCTATGGTC 59.893 55.000 0.00 0.00 44.46 4.02
3175 3191 0.179045 GTGCGAGGCAATCCTATGGT 60.179 55.000 0.00 0.00 44.46 3.55
3176 3192 0.179048 TGTGCGAGGCAATCCTATGG 60.179 55.000 0.00 0.00 44.46 2.74
3177 3193 0.940126 GTGTGCGAGGCAATCCTATG 59.060 55.000 0.00 0.00 44.46 2.23
3178 3194 0.530650 CGTGTGCGAGGCAATCCTAT 60.531 55.000 0.00 0.00 44.46 2.57
3179 3195 1.153647 CGTGTGCGAGGCAATCCTA 60.154 57.895 0.00 0.00 44.46 2.94
3181 3197 2.740714 GACGTGTGCGAGGCAATCC 61.741 63.158 0.00 0.00 41.47 3.01
3182 3198 2.740714 GGACGTGTGCGAGGCAATC 61.741 63.158 0.00 0.00 41.47 2.67
3183 3199 2.742372 GGACGTGTGCGAGGCAAT 60.742 61.111 0.00 0.00 41.47 3.56
3184 3200 4.980805 GGGACGTGTGCGAGGCAA 62.981 66.667 0.00 0.00 41.47 4.52
3186 3202 4.681978 AAGGGACGTGTGCGAGGC 62.682 66.667 0.00 0.00 42.00 4.70
3187 3203 1.566018 GAAAAGGGACGTGTGCGAGG 61.566 60.000 0.00 0.00 42.00 4.63
3188 3204 0.600255 AGAAAAGGGACGTGTGCGAG 60.600 55.000 0.00 0.00 42.00 5.03
3189 3205 0.179067 AAGAAAAGGGACGTGTGCGA 60.179 50.000 0.00 0.00 42.00 5.10
3190 3206 0.234884 GAAGAAAAGGGACGTGTGCG 59.765 55.000 0.00 0.00 44.93 5.34
3191 3207 1.531578 GAGAAGAAAAGGGACGTGTGC 59.468 52.381 0.00 0.00 0.00 4.57
3192 3208 1.792949 CGAGAAGAAAAGGGACGTGTG 59.207 52.381 0.00 0.00 0.00 3.82
3193 3209 1.872653 GCGAGAAGAAAAGGGACGTGT 60.873 52.381 0.00 0.00 0.00 4.49
3194 3210 0.790814 GCGAGAAGAAAAGGGACGTG 59.209 55.000 0.00 0.00 0.00 4.49
3195 3211 0.666577 CGCGAGAAGAAAAGGGACGT 60.667 55.000 0.00 0.00 0.00 4.34
3196 3212 0.388134 TCGCGAGAAGAAAAGGGACG 60.388 55.000 3.71 0.00 37.03 4.79
3197 3213 1.351153 CTCGCGAGAAGAAAAGGGAC 58.649 55.000 32.06 0.00 41.32 4.46
3198 3214 0.389948 GCTCGCGAGAAGAAAAGGGA 60.390 55.000 38.74 0.00 41.32 4.20
3199 3215 1.687494 CGCTCGCGAGAAGAAAAGGG 61.687 60.000 38.74 14.99 42.83 3.95
3200 3216 0.732880 TCGCTCGCGAGAAGAAAAGG 60.733 55.000 38.74 15.58 44.01 3.11
3201 3217 2.725644 TCGCTCGCGAGAAGAAAAG 58.274 52.632 38.74 18.48 44.01 2.27
3202 3218 4.957266 TCGCTCGCGAGAAGAAAA 57.043 50.000 38.74 13.24 44.01 2.29
3218 3234 3.362851 GATTTGCGTGACCGGCGTC 62.363 63.158 6.01 4.26 39.66 5.19
3219 3235 3.419759 GATTTGCGTGACCGGCGT 61.420 61.111 6.01 0.00 33.68 5.68
3220 3236 4.160635 GGATTTGCGTGACCGGCG 62.161 66.667 0.00 0.00 33.68 6.46
3221 3237 3.810896 GGGATTTGCGTGACCGGC 61.811 66.667 0.00 0.00 33.68 6.13
3222 3238 3.131478 GGGGATTTGCGTGACCGG 61.131 66.667 0.00 0.00 33.68 5.28
3223 3239 2.046314 AGGGGATTTGCGTGACCG 60.046 61.111 0.00 0.00 37.07 4.79
3224 3240 2.700773 GCAGGGGATTTGCGTGACC 61.701 63.158 0.00 0.00 0.00 4.02
3225 3241 1.244019 AAGCAGGGGATTTGCGTGAC 61.244 55.000 0.00 0.00 45.98 3.67
3226 3242 1.074775 AAGCAGGGGATTTGCGTGA 59.925 52.632 0.00 0.00 45.98 4.35
3227 3243 1.213537 CAAGCAGGGGATTTGCGTG 59.786 57.895 0.00 0.00 45.98 5.34
3228 3244 0.827507 AACAAGCAGGGGATTTGCGT 60.828 50.000 0.00 0.00 45.98 5.24
3229 3245 0.109132 GAACAAGCAGGGGATTTGCG 60.109 55.000 0.00 0.00 45.98 4.85
3230 3246 0.968405 TGAACAAGCAGGGGATTTGC 59.032 50.000 0.00 0.00 41.83 3.68
3231 3247 2.159338 CGATGAACAAGCAGGGGATTTG 60.159 50.000 0.00 0.00 0.00 2.32
3232 3248 2.094675 CGATGAACAAGCAGGGGATTT 58.905 47.619 0.00 0.00 0.00 2.17
3233 3249 1.004745 ACGATGAACAAGCAGGGGATT 59.995 47.619 0.00 0.00 0.00 3.01
3234 3250 0.620556 ACGATGAACAAGCAGGGGAT 59.379 50.000 0.00 0.00 0.00 3.85
3235 3251 0.400213 AACGATGAACAAGCAGGGGA 59.600 50.000 0.00 0.00 0.00 4.81
3236 3252 0.804989 GAACGATGAACAAGCAGGGG 59.195 55.000 0.00 0.00 0.00 4.79
3237 3253 0.804989 GGAACGATGAACAAGCAGGG 59.195 55.000 0.00 0.00 0.00 4.45
3238 3254 0.804989 GGGAACGATGAACAAGCAGG 59.195 55.000 0.00 0.00 0.00 4.85
3239 3255 0.804989 GGGGAACGATGAACAAGCAG 59.195 55.000 0.00 0.00 0.00 4.24
3240 3256 0.608035 GGGGGAACGATGAACAAGCA 60.608 55.000 0.00 0.00 0.00 3.91
3241 3257 1.644786 CGGGGGAACGATGAACAAGC 61.645 60.000 0.00 0.00 35.47 4.01
3242 3258 1.644786 GCGGGGGAACGATGAACAAG 61.645 60.000 0.00 0.00 35.47 3.16
3243 3259 1.673009 GCGGGGGAACGATGAACAA 60.673 57.895 0.00 0.00 35.47 2.83
3244 3260 2.046700 GCGGGGGAACGATGAACA 60.047 61.111 0.00 0.00 35.47 3.18
3245 3261 3.192922 CGCGGGGGAACGATGAAC 61.193 66.667 0.00 0.00 35.47 3.18
3246 3262 4.460683 CCGCGGGGGAACGATGAA 62.461 66.667 20.10 0.00 38.47 2.57
3252 3268 4.717313 AGAAAGCCGCGGGGGAAC 62.717 66.667 29.38 9.78 38.47 3.62
3253 3269 4.715523 CAGAAAGCCGCGGGGGAA 62.716 66.667 29.38 0.00 38.47 3.97
3263 3279 0.607489 TGGAGGCAGAAGCAGAAAGC 60.607 55.000 0.00 0.00 44.61 3.51
3264 3280 1.743958 CATGGAGGCAGAAGCAGAAAG 59.256 52.381 0.00 0.00 44.61 2.62
3265 3281 1.615116 CCATGGAGGCAGAAGCAGAAA 60.615 52.381 5.56 0.00 44.61 2.52
3266 3282 0.034767 CCATGGAGGCAGAAGCAGAA 60.035 55.000 5.56 0.00 44.61 3.02
3267 3283 1.605992 CCATGGAGGCAGAAGCAGA 59.394 57.895 5.56 0.00 44.61 4.26
3268 3284 4.237445 CCATGGAGGCAGAAGCAG 57.763 61.111 5.56 0.00 44.61 4.24
3300 3316 2.202987 ATGTAGCCAGCGAGCTGC 60.203 61.111 18.81 13.94 44.67 5.25
3301 3317 1.886313 CCATGTAGCCAGCGAGCTG 60.886 63.158 17.44 17.44 44.67 4.24
3303 3319 1.450312 AACCATGTAGCCAGCGAGC 60.450 57.895 0.00 0.00 0.00 5.03
3304 3320 1.709147 GCAACCATGTAGCCAGCGAG 61.709 60.000 0.00 0.00 0.00 5.03
3305 3321 1.745115 GCAACCATGTAGCCAGCGA 60.745 57.895 0.00 0.00 0.00 4.93
3306 3322 1.378882 ATGCAACCATGTAGCCAGCG 61.379 55.000 0.00 0.00 0.00 5.18
3307 3323 0.383231 GATGCAACCATGTAGCCAGC 59.617 55.000 0.00 0.00 0.00 4.85
3308 3324 0.659427 CGATGCAACCATGTAGCCAG 59.341 55.000 0.00 0.00 0.00 4.85
3309 3325 1.375853 GCGATGCAACCATGTAGCCA 61.376 55.000 0.00 0.00 0.00 4.75
3310 3326 1.097547 AGCGATGCAACCATGTAGCC 61.098 55.000 0.00 0.00 0.00 3.93
3311 3327 0.305922 GAGCGATGCAACCATGTAGC 59.694 55.000 0.00 0.00 0.00 3.58
3312 3328 0.578683 CGAGCGATGCAACCATGTAG 59.421 55.000 0.00 0.00 0.00 2.74
3313 3329 0.108377 ACGAGCGATGCAACCATGTA 60.108 50.000 0.00 0.00 0.00 2.29
3314 3330 1.375908 ACGAGCGATGCAACCATGT 60.376 52.632 0.00 0.00 0.00 3.21
3315 3331 1.061411 CACGAGCGATGCAACCATG 59.939 57.895 0.00 0.00 0.00 3.66
3316 3332 2.753966 GCACGAGCGATGCAACCAT 61.754 57.895 0.00 0.00 42.88 3.55
3317 3333 3.422303 GCACGAGCGATGCAACCA 61.422 61.111 0.00 0.00 42.88 3.67
3339 3355 1.743958 CTACATAGGGGCGGATAGACG 59.256 57.143 0.00 0.00 0.00 4.18
3340 3356 1.477295 GCTACATAGGGGCGGATAGAC 59.523 57.143 0.00 0.00 0.00 2.59
3341 3357 1.076513 TGCTACATAGGGGCGGATAGA 59.923 52.381 0.00 0.00 0.00 1.98
3342 3358 1.557099 TGCTACATAGGGGCGGATAG 58.443 55.000 0.00 0.00 0.00 2.08
3343 3359 2.018355 TTGCTACATAGGGGCGGATA 57.982 50.000 0.00 0.00 0.00 2.59
3344 3360 1.136828 TTTGCTACATAGGGGCGGAT 58.863 50.000 0.00 0.00 0.00 4.18
3345 3361 0.913205 TTTTGCTACATAGGGGCGGA 59.087 50.000 0.00 0.00 0.00 5.54
3346 3362 1.676006 CTTTTTGCTACATAGGGGCGG 59.324 52.381 0.00 0.00 0.00 6.13
3347 3363 1.065551 GCTTTTTGCTACATAGGGGCG 59.934 52.381 0.00 0.00 38.95 6.13
3348 3364 1.065551 CGCTTTTTGCTACATAGGGGC 59.934 52.381 0.00 0.00 40.11 5.80
3349 3365 2.365582 ACGCTTTTTGCTACATAGGGG 58.634 47.619 0.00 0.00 40.11 4.79
3350 3366 3.190535 ACAACGCTTTTTGCTACATAGGG 59.809 43.478 0.00 0.00 40.11 3.53
3351 3367 4.403453 GACAACGCTTTTTGCTACATAGG 58.597 43.478 0.00 0.00 40.11 2.57
3352 3368 4.081761 CGACAACGCTTTTTGCTACATAG 58.918 43.478 0.00 0.00 40.11 2.23
3353 3369 3.120477 CCGACAACGCTTTTTGCTACATA 60.120 43.478 0.00 0.00 40.11 2.29
3354 3370 2.350388 CCGACAACGCTTTTTGCTACAT 60.350 45.455 0.00 0.00 40.11 2.29
3355 3371 1.003331 CCGACAACGCTTTTTGCTACA 60.003 47.619 0.00 0.00 40.11 2.74
3356 3372 1.003223 ACCGACAACGCTTTTTGCTAC 60.003 47.619 0.00 0.00 40.11 3.58
3357 3373 1.301423 ACCGACAACGCTTTTTGCTA 58.699 45.000 0.00 0.00 40.11 3.49
3358 3374 0.454196 AACCGACAACGCTTTTTGCT 59.546 45.000 0.00 0.00 40.11 3.91
3359 3375 0.843872 GAACCGACAACGCTTTTTGC 59.156 50.000 0.00 0.00 38.29 3.68
3360 3376 1.202200 TGGAACCGACAACGCTTTTTG 60.202 47.619 0.00 0.00 38.29 2.44
3361 3377 1.096416 TGGAACCGACAACGCTTTTT 58.904 45.000 0.00 0.00 38.29 1.94
3362 3378 1.096416 TTGGAACCGACAACGCTTTT 58.904 45.000 0.00 0.00 38.29 2.27
3363 3379 0.379316 GTTGGAACCGACAACGCTTT 59.621 50.000 6.37 0.00 38.83 3.51
3364 3380 2.019337 GTTGGAACCGACAACGCTT 58.981 52.632 6.37 0.00 38.83 4.68
3365 3381 3.727146 GTTGGAACCGACAACGCT 58.273 55.556 6.37 0.00 38.83 5.07
3368 3384 3.175929 CTGTTTTGTTGGAACCGACAAC 58.824 45.455 21.80 14.76 46.41 3.32
3369 3385 2.416162 GCTGTTTTGTTGGAACCGACAA 60.416 45.455 19.14 19.14 45.47 3.18
3370 3386 1.133407 GCTGTTTTGTTGGAACCGACA 59.867 47.619 9.59 9.59 38.45 4.35
3371 3387 1.535226 GGCTGTTTTGTTGGAACCGAC 60.535 52.381 4.40 4.40 0.00 4.79
3372 3388 0.741915 GGCTGTTTTGTTGGAACCGA 59.258 50.000 0.00 0.00 0.00 4.69
3373 3389 0.249280 GGGCTGTTTTGTTGGAACCG 60.249 55.000 0.00 0.00 0.00 4.44
3374 3390 0.249280 CGGGCTGTTTTGTTGGAACC 60.249 55.000 0.00 0.00 0.00 3.62
3375 3391 0.874175 GCGGGCTGTTTTGTTGGAAC 60.874 55.000 0.00 0.00 0.00 3.62
3376 3392 1.323271 TGCGGGCTGTTTTGTTGGAA 61.323 50.000 0.00 0.00 0.00 3.53
3377 3393 1.733402 CTGCGGGCTGTTTTGTTGGA 61.733 55.000 0.00 0.00 0.00 3.53
3378 3394 1.300080 CTGCGGGCTGTTTTGTTGG 60.300 57.895 0.00 0.00 0.00 3.77
3379 3395 1.300080 CCTGCGGGCTGTTTTGTTG 60.300 57.895 0.00 0.00 0.00 3.33
3380 3396 1.734388 GACCTGCGGGCTGTTTTGTT 61.734 55.000 12.89 0.00 35.63 2.83
3381 3397 2.123897 ACCTGCGGGCTGTTTTGT 60.124 55.556 12.89 0.00 35.63 2.83
3382 3398 2.644992 GACCTGCGGGCTGTTTTG 59.355 61.111 12.89 0.00 35.63 2.44
3383 3399 2.978010 CGACCTGCGGGCTGTTTT 60.978 61.111 12.89 0.00 36.03 2.43
3393 3409 2.045926 AGGGATGTTGCGACCTGC 60.046 61.111 0.45 0.00 46.70 4.85
3394 3410 1.811266 CGAGGGATGTTGCGACCTG 60.811 63.158 0.45 0.00 32.42 4.00
3395 3411 2.579201 CGAGGGATGTTGCGACCT 59.421 61.111 0.45 0.00 35.67 3.85
3396 3412 2.292794 TAGCGAGGGATGTTGCGACC 62.293 60.000 0.45 0.00 31.41 4.79
3397 3413 0.872021 CTAGCGAGGGATGTTGCGAC 60.872 60.000 0.00 0.00 31.41 5.19
3398 3414 1.320344 ACTAGCGAGGGATGTTGCGA 61.320 55.000 0.00 0.00 31.41 5.10
3399 3415 0.460284 AACTAGCGAGGGATGTTGCG 60.460 55.000 0.00 0.00 31.41 4.85
3400 3416 1.291132 GAACTAGCGAGGGATGTTGC 58.709 55.000 0.00 0.00 0.00 4.17
3401 3417 1.135083 ACGAACTAGCGAGGGATGTTG 60.135 52.381 0.00 0.00 34.83 3.33
3402 3418 1.183549 ACGAACTAGCGAGGGATGTT 58.816 50.000 0.00 0.00 34.83 2.71
3403 3419 1.135083 CAACGAACTAGCGAGGGATGT 60.135 52.381 0.00 0.00 34.83 3.06
3404 3420 1.560923 CAACGAACTAGCGAGGGATG 58.439 55.000 0.00 0.00 34.83 3.51
3405 3421 0.179108 GCAACGAACTAGCGAGGGAT 60.179 55.000 0.00 0.00 34.83 3.85
3406 3422 1.214589 GCAACGAACTAGCGAGGGA 59.785 57.895 0.00 0.00 34.83 4.20
3407 3423 0.802607 GAGCAACGAACTAGCGAGGG 60.803 60.000 0.00 0.00 34.83 4.30
3408 3424 0.802607 GGAGCAACGAACTAGCGAGG 60.803 60.000 0.00 0.00 34.83 4.63
3409 3425 0.171455 AGGAGCAACGAACTAGCGAG 59.829 55.000 0.00 0.00 34.83 5.03
3410 3426 0.109272 CAGGAGCAACGAACTAGCGA 60.109 55.000 0.00 0.00 34.83 4.93
3411 3427 0.388649 ACAGGAGCAACGAACTAGCG 60.389 55.000 0.00 0.00 37.29 4.26
3412 3428 1.336887 TGACAGGAGCAACGAACTAGC 60.337 52.381 0.00 0.00 0.00 3.42
3413 3429 2.724977 TGACAGGAGCAACGAACTAG 57.275 50.000 0.00 0.00 0.00 2.57
3414 3430 3.762288 ACTATGACAGGAGCAACGAACTA 59.238 43.478 0.00 0.00 0.00 2.24
3415 3431 2.563179 ACTATGACAGGAGCAACGAACT 59.437 45.455 0.00 0.00 0.00 3.01
3416 3432 2.924290 GACTATGACAGGAGCAACGAAC 59.076 50.000 0.00 0.00 0.00 3.95
3417 3433 2.415491 CGACTATGACAGGAGCAACGAA 60.415 50.000 0.00 0.00 0.00 3.85
3418 3434 1.132453 CGACTATGACAGGAGCAACGA 59.868 52.381 0.00 0.00 0.00 3.85
3419 3435 1.135373 ACGACTATGACAGGAGCAACG 60.135 52.381 0.00 0.00 0.00 4.10
3420 3436 2.531206 GACGACTATGACAGGAGCAAC 58.469 52.381 0.00 0.00 0.00 4.17
3421 3437 1.132453 CGACGACTATGACAGGAGCAA 59.868 52.381 0.00 0.00 0.00 3.91
3422 3438 0.733150 CGACGACTATGACAGGAGCA 59.267 55.000 0.00 0.00 0.00 4.26
3423 3439 0.733729 ACGACGACTATGACAGGAGC 59.266 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.