AutoCloner

Multiple sequence alignment - TraesCS7D01G102500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G102500	chr7D	100.000	8795	0	0	1	8795	62154188	62162982	0.000000e+00	16242.0
1	TraesCS7D01G102500	chr7D	92.663	1690	71	13	108	1792	62459722	62461363	0.000000e+00	2385.0
2	TraesCS7D01G102500	chr7D	92.658	1689	72	10	108	1792	62531747	62533387	0.000000e+00	2385.0
3	TraesCS7D01G102500	chr7D	90.296	1216	107	9	3586	4796	426191585	426190376	0.000000e+00	1581.0
4	TraesCS7D01G102500	chr7D	93.468	1041	57	7	7762	8795	62536940	62537976	0.000000e+00	1535.0
5	TraesCS7D01G102500	chr7D	91.249	937	69	8	6835	7760	62463615	62464549	0.000000e+00	1264.0
6	TraesCS7D01G102500	chr7D	91.249	937	69	8	6835	7760	62535661	62536595	0.000000e+00	1264.0
7	TraesCS7D01G102500	chr7D	86.277	838	95	13	1813	2644	62461350	62462173	0.000000e+00	893.0
8	TraesCS7D01G102500	chr7D	84.707	837	101	13	1813	2644	62533374	62534188	0.000000e+00	830.0
9	TraesCS7D01G102500	chr7D	86.880	625	57	13	5455	6058	62462919	62463539	0.000000e+00	676.0
10	TraesCS7D01G102500	chr7D	86.880	625	57	13	5455	6058	62534965	62535585	0.000000e+00	676.0
11	TraesCS7D01G102500	chr7D	85.160	593	82	6	8203	8793	62194602	62195190	3.510000e-168	603.0
12	TraesCS7D01G102500	chr7D	85.380	513	68	5	8287	8795	62941105	62941614	7.820000e-145	525.0
13	TraesCS7D01G102500	chr7D	86.192	239	31	2	6203	6439	627700541	627700303	3.150000e-64	257.0
14	TraesCS7D01G102500	chr7D	84.959	246	29	6	6476	6718	17318971	17319211	8.820000e-60	243.0
15	TraesCS7D01G102500	chr7D	78.089	429	48	32	5073	5456	62462438	62462865	6.870000e-56	230.0
16	TraesCS7D01G102500	chr7D	95.413	109	5	0	1	109	62459400	62459508	3.260000e-39	174.0
17	TraesCS7D01G102500	chr7D	94.495	109	6	0	1	109	62531425	62531533	1.520000e-37	169.0
18	TraesCS7D01G102500	chr7D	87.805	123	14	1	8203	8324	62940979	62941101	9.200000e-30	143.0
19	TraesCS7D01G102500	chr7D	87.302	126	10	1	5331	5456	62534792	62534911	1.190000e-28	139.0
20	TraesCS7D01G102500	chr7D	82.609	161	25	3	5165	5323	603142124	603142283	1.190000e-28	139.0
21	TraesCS7D01G102500	chr7D	84.496	129	18	2	5163	5290	38659497	38659370	9.270000e-25	126.0
22	TraesCS7D01G102500	chr7D	82.292	96	16	1	2277	2372	52381900	52381994	2.040000e-11	82.4
23	TraesCS7D01G102500	chr7A	90.034	1455	96	28	361	1792	65483389	65484817	0.000000e+00	1838.0
24	TraesCS7D01G102500	chr7A	90.680	1352	93	18	6729	8058	65487871	65489211	0.000000e+00	1768.0
25	TraesCS7D01G102500	chr7A	89.035	1213	118	12	3589	4796	57179258	57178056	0.000000e+00	1489.0
26	TraesCS7D01G102500	chr7A	87.911	1216	133	7	3589	4796	105926479	105927688	0.000000e+00	1419.0
27	TraesCS7D01G102500	chr7A	88.855	978	76	11	2640	3587	686203050	686202076	0.000000e+00	1171.0
28	TraesCS7D01G102500	chr7A	91.775	766	49	7	8042	8795	65494550	65495313	0.000000e+00	1053.0
29	TraesCS7D01G102500	chr7A	85.412	994	91	17	2640	3587	57180506	57179521	0.000000e+00	983.0
30	TraesCS7D01G102500	chr7A	85.369	786	96	11	1867	2644	65485436	65486210	0.000000e+00	797.0
31	TraesCS7D01G102500	chr7A	86.430	619	57	13	5455	6058	65487249	65487855	0.000000e+00	652.0
32	TraesCS7D01G102500	chr7A	85.354	594	83	4	8203	8795	65518875	65519465	5.840000e-171	612.0
33	TraesCS7D01G102500	chr7A	91.144	271	19	5	4529	4795	92396725	92396456	6.490000e-96	363.0
34	TraesCS7D01G102500	chr7A	78.846	156	28	5	5165	5318	195512788	195512940	5.620000e-17	100.0
35	TraesCS7D01G102500	chr7A	89.286	56	6	0	2320	2375	32581880	32581825	4.410000e-08	71.3
36	TraesCS7D01G102500	chrUn	93.823	1198	53	7	599	1795	335981424	335980247	0.000000e+00	1783.0
37	TraesCS7D01G102500	chrUn	93.823	1198	53	7	599	1795	345479052	345477875	0.000000e+00	1783.0
38	TraesCS7D01G102500	chrUn	93.372	1041	58	7	7762	8795	367446492	367447528	0.000000e+00	1530.0
39	TraesCS7D01G102500	chrUn	86.277	838	95	13	1813	2644	335980263	335979440	0.000000e+00	893.0
40	TraesCS7D01G102500	chrUn	86.277	838	95	13	1813	2644	345477891	345477068	0.000000e+00	893.0
41	TraesCS7D01G102500	chr2D	92.071	1236	81	13	3567	4793	623459454	623460681	0.000000e+00	1724.0
42	TraesCS7D01G102500	chr2D	87.663	1224	121	15	3589	4795	11468370	11467160	0.000000e+00	1397.0
43	TraesCS7D01G102500	chr2D	90.266	976	61	11	2643	3587	600331877	600332849	0.000000e+00	1245.0
44	TraesCS7D01G102500	chr2D	88.032	986	81	4	2639	3587	623445866	623446851	0.000000e+00	1133.0
45	TraesCS7D01G102500	chr2D	86.820	956	86	16	788	1726	134303479	134302547	0.000000e+00	1031.0
46	TraesCS7D01G102500	chr2D	84.607	968	120	18	6831	7777	134300621	134299662	0.000000e+00	935.0
47	TraesCS7D01G102500	chr2D	87.645	777	87	7	7027	7797	134298961	134298188	0.000000e+00	894.0
48	TraesCS7D01G102500	chr2D	88.736	728	64	10	2859	3586	638355414	638356123	0.000000e+00	874.0
49	TraesCS7D01G102500	chr2D	86.842	266	34	1	8203	8468	485992262	485992526	6.680000e-76	296.0
50	TraesCS7D01G102500	chr2D	86.364	242	31	2	6203	6442	428709914	428710155	6.770000e-66	263.0
51	TraesCS7D01G102500	chr2D	83.230	161	22	5	5165	5323	460763199	460763356	9.200000e-30	143.0
52	TraesCS7D01G102500	chr4D	91.232	1209	89	6	3589	4795	336251157	336252350	0.000000e+00	1629.0
53	TraesCS7D01G102500	chr4D	92.409	685	52	0	2903	3587	46884883	46885567	0.000000e+00	977.0
54	TraesCS7D01G102500	chr4D	88.912	487	35	9	1036	1522	397674115	397673648	4.580000e-162	582.0
55	TraesCS7D01G102500	chr4D	87.963	108	11	2	1	108	451804038	451803933	9.270000e-25	126.0
56	TraesCS7D01G102500	chr4D	81.529	157	24	5	5165	5317	62467923	62468078	3.330000e-24	124.0
57	TraesCS7D01G102500	chr4D	87.179	78	10	0	2317	2394	15256210	15256287	1.220000e-13	89.8
58	TraesCS7D01G102500	chr2A	88.439	1211	126	9	3589	4793	163665307	163664105	0.000000e+00	1448.0
59	TraesCS7D01G102500	chr2A	85.325	954	100	26	791	1726	141898281	141897350	0.000000e+00	950.0
60	TraesCS7D01G102500	chr2A	85.145	929	102	24	6898	7797	141893685	141892764	0.000000e+00	918.0
61	TraesCS7D01G102500	chr2A	83.692	975	123	20	6831	7777	141895724	141894758	0.000000e+00	887.0
62	TraesCS7D01G102500	chr2A	80.137	146	10	3	6057	6202	177665968	177665842	3.380000e-14	91.6
63	TraesCS7D01G102500	chr6A	88.439	1211	110	13	3589	4793	194802726	194803912	0.000000e+00	1434.0
64	TraesCS7D01G102500	chr6A	87.020	1225	142	12	3589	4807	489866519	489865306	0.000000e+00	1365.0
65	TraesCS7D01G102500	chr6A	86.731	1236	137	12	3589	4797	392202614	392203849	0.000000e+00	1349.0
66	TraesCS7D01G102500	chr6A	85.396	1212	142	17	3589	4797	252859870	252858691	0.000000e+00	1225.0
67	TraesCS7D01G102500	chr6A	88.474	963	87	12	2643	3587	214185715	214184759	0.000000e+00	1142.0
68	TraesCS7D01G102500	chr6A	82.587	1229	150	37	3589	4795	36360582	36361768	0.000000e+00	1026.0
69	TraesCS7D01G102500	chr6A	86.640	247	29	4	6201	6444	577867447	577867692	4.050000e-68	270.0
70	TraesCS7D01G102500	chr3D	87.139	1213	143	9	3589	4795	223093741	223092536	0.000000e+00	1363.0
71	TraesCS7D01G102500	chr3D	86.707	835	79	13	2633	3441	607914141	607914969	0.000000e+00	898.0
72	TraesCS7D01G102500	chr3D	89.552	134	6	3	6069	6202	182095433	182095308	7.070000e-36	163.0
73	TraesCS7D01G102500	chr6D	89.286	980	63	7	2641	3584	455730773	455731746	0.000000e+00	1190.0
74	TraesCS7D01G102500	chr6D	83.992	481	42	13	2641	3092	61020346	61020820	6.310000e-116	429.0
75	TraesCS7D01G102500	chr5D	88.134	986	69	12	2643	3587	425075161	425074183	0.000000e+00	1129.0
76	TraesCS7D01G102500	chr5D	95.000	220	8	3	2641	2857	2799662	2799881	8.450000e-90	342.0
77	TraesCS7D01G102500	chr5D	87.448	239	28	2	6203	6439	487944593	487944831	3.130000e-69	274.0
78	TraesCS7D01G102500	chr5D	81.595	163	18	8	5157	5317	311615864	311616016	3.330000e-24	124.0
79	TraesCS7D01G102500	chr3A	87.992	966	79	13	2640	3575	516290954	516289996	0.000000e+00	1107.0
80	TraesCS7D01G102500	chr3A	77.455	275	47	9	8480	8741	20837783	20838055	5.500000e-32	150.0
81	TraesCS7D01G102500	chr3A	82.474	97	17	0	2276	2372	475722642	475722738	1.570000e-12	86.1
82	TraesCS7D01G102500	chr1D	93.769	674	42	0	2914	3587	74924569	74925242	0.000000e+00	1013.0
83	TraesCS7D01G102500	chr1D	81.235	1231	166	34	3586	4793	342218562	342219750	0.000000e+00	933.0
84	TraesCS7D01G102500	chr1D	93.213	221	13	2	2639	2857	74924236	74924456	3.060000e-84	324.0
85	TraesCS7D01G102500	chr1D	92.273	220	14	2	2641	2857	229583356	229583575	8.580000e-80	309.0
86	TraesCS7D01G102500	chr1D	91.892	222	14	4	2639	2857	476861311	476861091	3.080000e-79	307.0
87	TraesCS7D01G102500	chr2B	86.435	951	83	22	791	1726	190239043	190238124	0.000000e+00	1000.0
88	TraesCS7D01G102500	chr2B	86.935	796	95	6	7008	7797	190234663	190233871	0.000000e+00	885.0
89	TraesCS7D01G102500	chr2B	83.402	964	135	15	6831	7777	190236204	190235249	0.000000e+00	870.0
90	TraesCS7D01G102500	chr2B	88.750	240	23	4	6203	6439	273870008	273869770	3.110000e-74	291.0
91	TraesCS7D01G102500	chr4B	85.440	989	98	22	2641	3586	144684527	144685512	0.000000e+00	987.0
92	TraesCS7D01G102500	chr4B	86.066	244	32	2	6199	6440	183525228	183524985	2.440000e-65	261.0
93	TraesCS7D01G102500	chr4B	88.496	113	11	2	230	340	535106382	535106270	1.540000e-27	135.0
94	TraesCS7D01G102500	chr5A	85.699	958	98	17	2643	3586	646905529	646904597	0.000000e+00	974.0
95	TraesCS7D01G102500	chr5A	84.488	664	82	12	2643	3297	426405076	426404425	3.460000e-178	636.0
96	TraesCS7D01G102500	chr5A	85.600	125	9	5	217	337	602966520	602966401	1.200000e-23	122.0
97	TraesCS7D01G102500	chr5A	80.488	164	23	9	5165	5323	562802912	562803071	5.580000e-22	117.0
98	TraesCS7D01G102500	chr5B	82.210	534	41	21	2629	3123	429393754	429393236	2.290000e-110	411.0
99	TraesCS7D01G102500	chr5B	82.515	509	38	17	2641	3110	429362271	429361775	4.950000e-107	399.0
100	TraesCS7D01G102500	chr5B	87.190	242	27	4	6201	6439	91204342	91204582	1.130000e-68	272.0
101	TraesCS7D01G102500	chr5B	88.235	153	12	6	108	254	322562843	322562691	2.520000e-40	178.0
102	TraesCS7D01G102500	chr6B	88.211	246	27	2	6201	6444	650790905	650791150	8.640000e-75	292.0
103	TraesCS7D01G102500	chr6B	81.377	247	22	13	108	336	458002697	458002937	7.020000e-41	180.0
104	TraesCS7D01G102500	chr7B	86.667	240	28	4	6203	6439	384201065	384201303	6.770000e-66	263.0
105	TraesCS7D01G102500	chr7B	83.230	161	21	6	5165	5323	738152185	738152029	9.200000e-30	143.0
106	TraesCS7D01G102500	chr3B	86.667	135	7	4	6069	6203	260375112	260374989	1.190000e-28	139.0
107	TraesCS7D01G102500	chr3B	87.379	103	13	0	5157	5259	687631092	687631194	1.550000e-22	119.0
108	TraesCS7D01G102500	chr4A	76.632	291	37	16	8478	8741	742276788	742276502	1.990000e-26	132.0
109	TraesCS7D01G102500	chr4A	89.130	92	9	1	19	109	365619099	365619190	7.220000e-21	113.0
110	TraesCS7D01G102500	chr1A	93.151	73	5	0	8670	8742	586520894	586520966	3.360000e-19	108.0
111	TraesCS7D01G102500	chr1B	76.279	215	42	8	8530	8738	593834170	593833959	1.210000e-18	106.0
112	TraesCS7D01G102500	chr1B	86.842	76	8	2	2289	2363	677027855	677027929	5.660000e-12	84.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G102500	chr7D	62154188	62162982	8794	False	16242.000000	16242	100.000000	1	8795	1	chr7D.!!$F3	8794
1	TraesCS7D01G102500	chr7D	426190376	426191585	1209	True	1581.000000	1581	90.296000	3586	4796	1	chr7D.!!$R2	1210
2	TraesCS7D01G102500	chr7D	62531425	62537976	6551	False	999.714286	2385	90.108429	1	8795	7	chr7D.!!$F7	8794
3	TraesCS7D01G102500	chr7D	62459400	62464549	5149	False	937.000000	2385	88.428500	1	7760	6	chr7D.!!$F6	7759
4	TraesCS7D01G102500	chr7D	62194602	62195190	588	False	603.000000	603	85.160000	8203	8793	1	chr7D.!!$F4	590
5	TraesCS7D01G102500	chr7D	62940979	62941614	635	False	334.000000	525	86.592500	8203	8795	2	chr7D.!!$F8	592
6	TraesCS7D01G102500	chr7A	105926479	105927688	1209	False	1419.000000	1419	87.911000	3589	4796	1	chr7A.!!$F3	1207
7	TraesCS7D01G102500	chr7A	65483389	65489211	5822	False	1263.750000	1838	88.128250	361	8058	4	chr7A.!!$F5	7697
8	TraesCS7D01G102500	chr7A	57178056	57180506	2450	True	1236.000000	1489	87.223500	2640	4796	2	chr7A.!!$R4	2156
9	TraesCS7D01G102500	chr7A	686202076	686203050	974	True	1171.000000	1171	88.855000	2640	3587	1	chr7A.!!$R3	947
10	TraesCS7D01G102500	chr7A	65494550	65495313	763	False	1053.000000	1053	91.775000	8042	8795	1	chr7A.!!$F1	753
11	TraesCS7D01G102500	chr7A	65518875	65519465	590	False	612.000000	612	85.354000	8203	8795	1	chr7A.!!$F2	592
12	TraesCS7D01G102500	chrUn	367446492	367447528	1036	False	1530.000000	1530	93.372000	7762	8795	1	chrUn.!!$F1	1033
13	TraesCS7D01G102500	chrUn	335979440	335981424	1984	True	1338.000000	1783	90.050000	599	2644	2	chrUn.!!$R1	2045
14	TraesCS7D01G102500	chrUn	345477068	345479052	1984	True	1338.000000	1783	90.050000	599	2644	2	chrUn.!!$R2	2045
15	TraesCS7D01G102500	chr2D	623459454	623460681	1227	False	1724.000000	1724	92.071000	3567	4793	1	chr2D.!!$F6	1226
16	TraesCS7D01G102500	chr2D	11467160	11468370	1210	True	1397.000000	1397	87.663000	3589	4795	1	chr2D.!!$R1	1206
17	TraesCS7D01G102500	chr2D	600331877	600332849	972	False	1245.000000	1245	90.266000	2643	3587	1	chr2D.!!$F4	944
18	TraesCS7D01G102500	chr2D	623445866	623446851	985	False	1133.000000	1133	88.032000	2639	3587	1	chr2D.!!$F5	948
19	TraesCS7D01G102500	chr2D	134298188	134303479	5291	True	953.333333	1031	86.357333	788	7797	3	chr2D.!!$R2	7009
20	TraesCS7D01G102500	chr2D	638355414	638356123	709	False	874.000000	874	88.736000	2859	3586	1	chr2D.!!$F7	727
21	TraesCS7D01G102500	chr4D	336251157	336252350	1193	False	1629.000000	1629	91.232000	3589	4795	1	chr4D.!!$F4	1206
22	TraesCS7D01G102500	chr4D	46884883	46885567	684	False	977.000000	977	92.409000	2903	3587	1	chr4D.!!$F2	684
23	TraesCS7D01G102500	chr2A	163664105	163665307	1202	True	1448.000000	1448	88.439000	3589	4793	1	chr2A.!!$R1	1204
24	TraesCS7D01G102500	chr2A	141892764	141898281	5517	True	918.333333	950	84.720667	791	7797	3	chr2A.!!$R3	7006
25	TraesCS7D01G102500	chr6A	194802726	194803912	1186	False	1434.000000	1434	88.439000	3589	4793	1	chr6A.!!$F2	1204
26	TraesCS7D01G102500	chr6A	489865306	489866519	1213	True	1365.000000	1365	87.020000	3589	4807	1	chr6A.!!$R3	1218
27	TraesCS7D01G102500	chr6A	392202614	392203849	1235	False	1349.000000	1349	86.731000	3589	4797	1	chr6A.!!$F3	1208
28	TraesCS7D01G102500	chr6A	252858691	252859870	1179	True	1225.000000	1225	85.396000	3589	4797	1	chr6A.!!$R2	1208
29	TraesCS7D01G102500	chr6A	214184759	214185715	956	True	1142.000000	1142	88.474000	2643	3587	1	chr6A.!!$R1	944
30	TraesCS7D01G102500	chr6A	36360582	36361768	1186	False	1026.000000	1026	82.587000	3589	4795	1	chr6A.!!$F1	1206
31	TraesCS7D01G102500	chr3D	223092536	223093741	1205	True	1363.000000	1363	87.139000	3589	4795	1	chr3D.!!$R2	1206
32	TraesCS7D01G102500	chr3D	607914141	607914969	828	False	898.000000	898	86.707000	2633	3441	1	chr3D.!!$F1	808
33	TraesCS7D01G102500	chr6D	455730773	455731746	973	False	1190.000000	1190	89.286000	2641	3584	1	chr6D.!!$F2	943
34	TraesCS7D01G102500	chr5D	425074183	425075161	978	True	1129.000000	1129	88.134000	2643	3587	1	chr5D.!!$R1	944
35	TraesCS7D01G102500	chr3A	516289996	516290954	958	True	1107.000000	1107	87.992000	2640	3575	1	chr3A.!!$R1	935
36	TraesCS7D01G102500	chr1D	342218562	342219750	1188	False	933.000000	933	81.235000	3586	4793	1	chr1D.!!$F2	1207
37	TraesCS7D01G102500	chr1D	74924236	74925242	1006	False	668.500000	1013	93.491000	2639	3587	2	chr1D.!!$F3	948
38	TraesCS7D01G102500	chr2B	190233871	190239043	5172	True	918.333333	1000	85.590667	791	7797	3	chr2B.!!$R2	7006
39	TraesCS7D01G102500	chr4B	144684527	144685512	985	False	987.000000	987	85.440000	2641	3586	1	chr4B.!!$F1	945
40	TraesCS7D01G102500	chr5A	646904597	646905529	932	True	974.000000	974	85.699000	2643	3586	1	chr5A.!!$R3	943
41	TraesCS7D01G102500	chr5A	426404425	426405076	651	True	636.000000	636	84.488000	2643	3297	1	chr5A.!!$R1	654
42	TraesCS7D01G102500	chr5B	429393236	429393754	518	True	411.000000	411	82.210000	2629	3123	1	chr5B.!!$R3	494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
830	1086	1.093159	ACCTACTCGCACTCGGTAAG	58.907	55.000	0.00	0.00	36.13	2.34	F
1053	1339	1.136774	CGTCGTCATCTTCGGAGCA	59.863	57.895	0.00	0.00	0.00	4.26	F
1386	1672	1.218047	CGAGCCCGAGTTCATGGAA	59.782	57.895	0.00	0.00	38.22	3.53	F
2031	2918	0.248289	TCCTAGCCAAACAGCCGTAC	59.752	55.000	0.00	0.00	0.00	3.67	F
3204	4188	0.322277	AGTAGGTCGAGCTTGACGGA	60.322	55.000	23.90	13.93	39.83	4.69	F
3745	5017	0.106217	CTCCTCCTCCTCCTCCTCAC	60.106	65.000	0.00	0.00	0.00	3.51	F
4930	6753	0.260816	ATGAGGGCCTGATGTTGCAT	59.739	50.000	12.95	2.70	0.00	3.96	F
6179	8358	0.407139	AGCAACCTTCCAAGAGGCAT	59.593	50.000	0.00	0.00	40.65	4.40	F
6618	8984	0.031314	ACGCTGCATATCTCTCACCG	59.969	55.000	0.00	0.00	0.00	4.94	F
7520	12823	0.030235	CGTGGCTACATCGATTCGGA	59.970	55.000	6.18	0.00	0.00	4.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1802	2089	0.038890	TCATGAATCAAACCCCCGCA	59.961	50.0	0.00	0.00	0.00	5.69	R
2014	2901	0.108992	TCGTACGGCTGTTTGGCTAG	60.109	55.0	16.52	0.00	39.32	3.42	R
3076	4059	0.034337	TCAAGGCGTGGTACTTGACC	59.966	55.0	0.00	0.00	45.76	4.02	R
3659	4904	0.036875	CAAGAAGAAGAAGGGGGCGT	59.963	55.0	0.00	0.00	0.00	5.68	R
5181	7015	0.035820	GGTCCCGCCTGTCATAAACA	60.036	55.0	0.00	0.00	36.18	2.83	R
5294	7129	0.043485	GGAGGGGGAGAGAGAAGGTT	59.957	60.0	0.00	0.00	0.00	3.50	R
6599	8965	0.031314	CGGTGAGAGATATGCAGCGT	59.969	55.0	0.00	0.00	45.24	5.07	R
7347	12650	0.237235	TGCCGACGAAAATTGCAGTC	59.763	50.0	0.00	0.00	0.00	3.51	R
7602	12906	0.464013	ACTGGACGAGGACGATCGAT	60.464	55.0	24.34	7.06	45.56	3.59	R
8420	14121	0.924823	AGGAATCCAAGCCTGAGCAT	59.075	50.0	0.61	0.00	43.56	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
109	110	1.898094	TTCCCGTCCGTGTTCGAGA	60.898	57.895	0.00	0.00	39.71	4.04
296	516	2.152830	TGGTGGGACGAAAATAAACCG	58.847	47.619	0.00	0.00	0.00	4.44
317	537	3.193691	CGTGGAGTCTATTCACCAACTCT	59.806	47.826	0.00	0.00	38.52	3.24
326	546	7.397476	AGTCTATTCACCAACTCTGACATTAGA	59.603	37.037	0.00	0.00	0.00	2.10
349	569	7.351166	AGAAGTAGAGATAACTAGTGCTTCCT	58.649	38.462	0.00	0.00	35.01	3.36
448	692	8.328864	CGAACATAGCTTAGATGGTTAGTTTTC	58.671	37.037	0.00	0.00	0.00	2.29
512	756	4.592485	AGTCTAAGACTTGTCACTGGTG	57.408	45.455	0.00	0.00	40.28	4.17
517	761	1.560860	GACTTGTCACTGGTGCTCGC	61.561	60.000	0.00	0.00	0.00	5.03
639	886	3.960571	AGAGGTTGTGCTGCTCAATATT	58.039	40.909	18.61	8.68	0.00	1.28
824	1080	1.153745	CAGCCACCTACTCGCACTC	60.154	63.158	0.00	0.00	0.00	3.51
830	1086	1.093159	ACCTACTCGCACTCGGTAAG	58.907	55.000	0.00	0.00	36.13	2.34
945	1209	3.575351	GAAGCCACCTCGCAGTCGT	62.575	63.158	0.00	0.00	36.96	4.34
950	1225	1.287815	CACCTCGCAGTCGTACCAA	59.712	57.895	0.00	0.00	36.96	3.67
1053	1339	1.136774	CGTCGTCATCTTCGGAGCA	59.863	57.895	0.00	0.00	0.00	4.26
1386	1672	1.218047	CGAGCCCGAGTTCATGGAA	59.782	57.895	0.00	0.00	38.22	3.53
1685	1971	4.207891	AGCCCAGTGTGAGTTACTAATG	57.792	45.455	0.00	0.00	0.00	1.90
1778	2065	8.757982	AAATAGCAATCTGTTGAGATGGTAAT	57.242	30.769	0.00	0.00	39.04	1.89
1779	2066	7.741027	ATAGCAATCTGTTGAGATGGTAATG	57.259	36.000	0.00	0.00	39.04	1.90
1780	2067	5.748402	AGCAATCTGTTGAGATGGTAATGA	58.252	37.500	0.00	0.00	39.04	2.57
1781	2068	5.587844	AGCAATCTGTTGAGATGGTAATGAC	59.412	40.000	0.00	0.00	39.04	3.06
1782	2069	5.587844	GCAATCTGTTGAGATGGTAATGACT	59.412	40.000	0.00	0.00	39.04	3.41
1783	2070	6.238320	GCAATCTGTTGAGATGGTAATGACTC	60.238	42.308	0.00	0.00	39.04	3.36
1784	2071	6.550938	ATCTGTTGAGATGGTAATGACTCA	57.449	37.500	0.00	0.00	37.56	3.41
1785	2072	6.550938	TCTGTTGAGATGGTAATGACTCAT	57.449	37.500	0.00	0.00	38.79	2.90
1786	2073	6.343703	TCTGTTGAGATGGTAATGACTCATG	58.656	40.000	0.00	0.00	38.79	3.07
1787	2074	6.155049	TCTGTTGAGATGGTAATGACTCATGA	59.845	38.462	0.00	0.00	38.79	3.07
1788	2075	6.343703	TGTTGAGATGGTAATGACTCATGAG	58.656	40.000	21.37	21.37	38.79	2.90
1789	2076	5.541953	TGAGATGGTAATGACTCATGAGG	57.458	43.478	26.08	8.94	35.01	3.86
1790	2077	4.346127	TGAGATGGTAATGACTCATGAGGG	59.654	45.833	26.08	3.92	35.01	4.30
1791	2078	4.560739	AGATGGTAATGACTCATGAGGGA	58.439	43.478	26.08	12.58	0.00	4.20
1792	2079	5.161135	AGATGGTAATGACTCATGAGGGAT	58.839	41.667	26.08	14.27	0.00	3.85
1793	2080	5.610132	AGATGGTAATGACTCATGAGGGATT	59.390	40.000	26.08	22.26	0.00	3.01
1794	2081	5.715439	TGGTAATGACTCATGAGGGATTT	57.285	39.130	26.08	15.40	0.00	2.17
1795	2082	6.078456	TGGTAATGACTCATGAGGGATTTT	57.922	37.500	26.08	13.85	0.00	1.82
1796	2083	6.493166	TGGTAATGACTCATGAGGGATTTTT	58.507	36.000	26.08	12.62	0.00	1.94
1845	2144	7.294720	TGAGGGAATTAACAGTACCCATCATAT	59.705	37.037	0.00	0.00	42.62	1.78
1920	2804	6.017687	ACCTATTAACGTAATGCGGAATTTCC	60.018	38.462	5.28	5.28	46.52	3.13
1921	2805	6.204108	CCTATTAACGTAATGCGGAATTTCCT	59.796	38.462	13.45	0.00	46.52	3.36
1958	2842	5.177511	CGAGAACAATTCTTGTACTGCTCAA	59.822	40.000	0.00	0.00	44.59	3.02
1968	2852	6.769512	TCTTGTACTGCTCAAAGTTTAGGAT	58.230	36.000	0.00	0.00	0.00	3.24
1970	2854	8.372459	TCTTGTACTGCTCAAAGTTTAGGATTA	58.628	33.333	0.00	0.00	0.00	1.75
1971	2855	7.900782	TGTACTGCTCAAAGTTTAGGATTAC	57.099	36.000	0.00	0.00	0.00	1.89
1972	2856	7.446769	TGTACTGCTCAAAGTTTAGGATTACA	58.553	34.615	0.00	9.97	30.48	2.41
1982	2869	7.596749	AAGTTTAGGATTACAATCACGTCTG	57.403	36.000	4.45	0.00	37.15	3.51
1986	2873	5.344743	AGGATTACAATCACGTCTGACAT	57.655	39.130	8.73	0.00	37.15	3.06
1996	2883	3.740832	TCACGTCTGACATTGTCATTGAC	59.259	43.478	19.29	20.27	41.94	3.18
2004	2891	3.329386	ACATTGTCATTGACGTCCTCTG	58.671	45.455	14.12	7.88	34.95	3.35
2014	2901	3.715015	GTCCTCTGGACCCACTCC	58.285	66.667	5.49	0.00	46.19	3.85
2015	2902	1.079438	GTCCTCTGGACCCACTCCT	59.921	63.158	5.49	0.00	46.19	3.69
2028	2915	1.021390	CACTCCTAGCCAAACAGCCG	61.021	60.000	0.00	0.00	0.00	5.52
2031	2918	0.248289	TCCTAGCCAAACAGCCGTAC	59.752	55.000	0.00	0.00	0.00	3.67
2047	2934	2.223433	CCGTACGACTGTTGGATCTACC	60.223	54.545	18.76	0.00	39.54	3.18
2096	2985	9.821662	AATGACTAGCAAAATTAAAACTACGAC	57.178	29.630	0.00	0.00	0.00	4.34
2099	2988	7.504818	ACTAGCAAAATTAAAACTACGACGTC	58.495	34.615	2.43	5.18	0.00	4.34
2117	3006	5.508573	CGACGTCTGTGAGTAATACAAGAAG	59.491	44.000	14.70	0.00	0.00	2.85
2124	3013	9.856488	TCTGTGAGTAATACAAGAAGTATGTTC	57.144	33.333	0.00	0.00	42.56	3.18
2128	3017	9.569167	TGAGTAATACAAGAAGTATGTTCTTCG	57.431	33.333	2.67	2.79	45.69	3.79
2233	3122	3.058016	AGCAATTGGACTCAATGTTCACG	60.058	43.478	7.72	0.00	42.29	4.35
2235	3124	1.890876	TTGGACTCAATGTTCACGGG	58.109	50.000	0.00	0.00	33.05	5.28
2236	3125	0.605319	TGGACTCAATGTTCACGGGC	60.605	55.000	0.00	0.00	0.00	6.13
2248	3137	2.594592	ACGGGCAAAGTGCTCCAC	60.595	61.111	0.00	0.00	41.93	4.02
2261	3150	2.036733	GTGCTCCACTGTAACACCAGTA	59.963	50.000	0.00	0.00	43.70	2.74
2267	3156	5.747342	TCCACTGTAACACCAGTAAAAGTT	58.253	37.500	0.00	0.00	43.70	2.66
2269	3158	5.008316	CCACTGTAACACCAGTAAAAGTTCC	59.992	44.000	0.00	0.00	43.70	3.62
2271	3160	6.018180	CACTGTAACACCAGTAAAAGTTCCTC	60.018	42.308	0.00	0.00	43.70	3.71
2282	3171	7.063544	CCAGTAAAAGTTCCTCTGAAATACTCG	59.936	40.741	0.00	0.00	30.79	4.18
2286	3175	5.153950	AGTTCCTCTGAAATACTCGCTTT	57.846	39.130	0.00	0.00	30.79	3.51
2289	3178	4.495422	TCCTCTGAAATACTCGCTTTGTC	58.505	43.478	0.00	0.00	0.00	3.18
2290	3179	4.021456	TCCTCTGAAATACTCGCTTTGTCA	60.021	41.667	0.00	0.00	0.00	3.58
2291	3180	4.328440	CCTCTGAAATACTCGCTTTGTCAG	59.672	45.833	0.00	0.00	0.00	3.51
2301	3190	5.790593	ACTCGCTTTGTCAGGAATTACTTA	58.209	37.500	0.00	0.00	0.00	2.24
2305	3194	5.291128	CGCTTTGTCAGGAATTACTTATCGT	59.709	40.000	0.00	0.00	0.00	3.73
2307	3196	7.306051	CGCTTTGTCAGGAATTACTTATCGTAG	60.306	40.741	0.00	0.00	0.00	3.51
2382	3271	9.973661	TTCATTTCTCTGACAAATAATCCCTAA	57.026	29.630	0.00	0.00	0.00	2.69
2449	3338	6.612247	TCGAAGAGCTGACTAGAAGAATAG	57.388	41.667	0.00	0.00	0.00	1.73
2488	3377	5.594725	AGACTGGTCACGTAGAATCATACAT	59.405	40.000	3.51	0.00	0.00	2.29
2498	3387	6.042093	ACGTAGAATCATACATGTTCCTCCAT	59.958	38.462	2.30	0.00	0.00	3.41
2512	3401	4.422073	TCCTCCATCACCATTCATGTAC	57.578	45.455	0.00	0.00	0.00	2.90
2522	3411	3.205338	CCATTCATGTACGAGCCATCAA	58.795	45.455	0.00	0.00	0.00	2.57
2547	3438	1.134438	AACTTCACCCTCCCAGGTCC	61.134	60.000	0.00	0.00	38.39	4.46
2551	3442	4.354943	ACCCTCCCAGGTCCCAGG	62.355	72.222	0.00	0.00	33.81	4.45
2597	3488	1.069227	GTGTGGAAAACTGATCGGCAC	60.069	52.381	0.00	1.91	0.00	5.01
2636	3527	1.679944	CCTTTCACATGGTCGGCATCT	60.680	52.381	0.00	0.00	0.00	2.90
2721	3613	2.912542	CGCTAGATCGGCCCCTGA	60.913	66.667	0.00	0.00	0.00	3.86
2739	3632	2.760385	GGCGACCTAGCTCCCAGT	60.760	66.667	0.00	0.00	37.29	4.00
2740	3633	1.455217	GGCGACCTAGCTCCCAGTA	60.455	63.158	0.00	0.00	37.29	2.74
2794	3689	6.625740	CGGCAAATTCAAATGTAGTCATTCCT	60.626	38.462	0.00	0.00	42.60	3.36
2938	3894	1.183549	GGGTCGGAGCTTCTTCTGTA	58.816	55.000	7.19	0.00	0.00	2.74
3204	4188	0.322277	AGTAGGTCGAGCTTGACGGA	60.322	55.000	23.90	13.93	39.83	4.69
3271	4255	4.195334	AGGATGACCCGGGCATGC	62.195	66.667	29.20	29.20	40.87	4.06
3486	4470	0.788391	CGCTTGTAAACGTGGAGGTC	59.212	55.000	0.00	0.00	0.00	3.85
3503	4487	1.608283	GGTCCTTGAACTCTTGGTCGG	60.608	57.143	0.00	0.00	0.00	4.79
3526	4510	1.302949	GCCCTGGTGATACAAGGCA	59.697	57.895	1.19	0.00	45.30	4.75
3555	4539	3.114616	CAGCTGCACGGAGGAACG	61.115	66.667	0.00	0.00	40.31	3.95
3587	4571	1.495584	GCGCACACGGTGAAGAGAAA	61.496	55.000	16.29	0.00	40.57	2.52
3641	4886	3.134127	GGACGCCCACTTGATGCC	61.134	66.667	0.00	0.00	0.00	4.40
3720	4977	3.827898	GGCTCGTCCTCCTCCACG	61.828	72.222	0.00	0.00	37.36	4.94
3726	4983	2.053277	GTCCTCCTCCACGTCCTCC	61.053	68.421	0.00	0.00	0.00	4.30
3744	5016	1.292941	CCTCCTCCTCCTCCTCCTCA	61.293	65.000	0.00	0.00	0.00	3.86
3745	5017	0.106217	CTCCTCCTCCTCCTCCTCAC	60.106	65.000	0.00	0.00	0.00	3.51
3802	5089	0.895530	GAGATCCACCGTGTCTTCCA	59.104	55.000	0.00	0.00	0.00	3.53
3912	5226	1.416434	GTGCGACGTAGAAGCTTGC	59.584	57.895	2.10	0.00	35.03	4.01
3963	5278	3.116531	GTTGGGGAGCACGCGTAC	61.117	66.667	13.44	6.32	34.15	3.67
3987	5302	1.299926	CGGCGAGTAGGTGTATGGC	60.300	63.158	0.00	0.00	0.00	4.40
4173	5496	2.970974	GACGCTTTGCTGGCTCCAC	61.971	63.158	0.00	0.00	0.00	4.02
4214	5537	1.635817	CCGGGTGGGTTCATCATCCT	61.636	60.000	0.00	0.00	33.38	3.24
4337	5684	4.070552	GACAGCCTCCCGTCGCTT	62.071	66.667	0.00	0.00	31.40	4.68
4510	5864	2.110006	GAGCGGGAGGGAGATTGC	59.890	66.667	0.00	0.00	0.00	3.56
4512	5866	3.797353	GCGGGAGGGAGATTGCCA	61.797	66.667	0.00	0.00	0.00	4.92
4549	5916	1.727525	TGGGAGGGAAATGGGGAAAAT	59.272	47.619	0.00	0.00	0.00	1.82
4665	6035	4.324991	GGTTTGGCTCGGGTCCGT	62.325	66.667	9.36	0.00	40.74	4.69
4704	6075	4.398598	CCGGCGAAAAACGGGCTG	62.399	66.667	9.30	0.00	46.08	4.85
4804	6178	2.556189	GAGATGCTCTTAGCCTCGATCA	59.444	50.000	0.00	0.00	41.51	2.92
4850	6672	5.010112	TCGACAAAAATCTGACTGAGACTCT	59.990	40.000	3.68	0.00	31.75	3.24
4855	6677	6.418057	AAAATCTGACTGAGACTCTGAACT	57.582	37.500	15.53	0.00	31.75	3.01
4867	6689	5.704888	AGACTCTGAACTGAGAATACAACG	58.295	41.667	13.90	0.00	37.50	4.10
4868	6690	4.810790	ACTCTGAACTGAGAATACAACGG	58.189	43.478	13.90	0.00	37.50	4.44
4887	6710	2.915137	TTTTTCACGGGCCCAGGC	60.915	61.111	24.92	0.00	41.06	4.85
4915	6738	3.920231	TCCTCACCAAGATGGAATGAG	57.080	47.619	2.85	6.70	40.96	2.90
4924	6747	1.424302	AGATGGAATGAGGGCCTGATG	59.576	52.381	12.95	0.00	0.00	3.07
4930	6753	0.260816	ATGAGGGCCTGATGTTGCAT	59.739	50.000	12.95	2.70	0.00	3.96
4931	6754	0.918258	TGAGGGCCTGATGTTGCATA	59.082	50.000	12.95	0.00	0.00	3.14
4939	6762	4.070009	GCCTGATGTTGCATATCTCATGA	58.930	43.478	11.39	0.00	0.00	3.07
4940	6763	4.517832	GCCTGATGTTGCATATCTCATGAA	59.482	41.667	11.39	0.00	0.00	2.57
4947	6770	6.466812	TGTTGCATATCTCATGAATATCCGT	58.533	36.000	0.00	0.00	0.00	4.69
4960	6783	7.494625	TCATGAATATCCGTTGGTAAGAAGAAC	59.505	37.037	0.00	0.00	0.00	3.01
4993	6816	6.698008	TTGTTCATATCCTAGCAACCATTG	57.302	37.500	0.00	0.00	0.00	2.82
4996	6819	6.543465	TGTTCATATCCTAGCAACCATTGAAG	59.457	38.462	0.00	0.00	0.00	3.02
5013	6836	5.991933	TTGAAGTCTAGCAACTCTGAGAT	57.008	39.130	12.44	0.00	0.00	2.75
5016	6839	2.948979	AGTCTAGCAACTCTGAGATCCG	59.051	50.000	12.44	0.00	0.00	4.18
5025	6848	4.608948	ACTCTGAGATCCGTTTGAAACT	57.391	40.909	12.44	0.00	0.00	2.66
5026	6849	4.310769	ACTCTGAGATCCGTTTGAAACTG	58.689	43.478	12.44	0.00	0.00	3.16
5038	6861	4.215399	CGTTTGAAACTGCATCTCCCTTTA	59.785	41.667	6.49	0.00	0.00	1.85
5040	6863	6.570378	CGTTTGAAACTGCATCTCCCTTTAAT	60.570	38.462	6.49	0.00	0.00	1.40
5050	6873	9.342308	CTGCATCTCCCTTTAATGAGTATTTAA	57.658	33.333	0.00	0.00	0.00	1.52
5088	6913	1.283613	ACTTGTTGGTGTCCCACTGAA	59.716	47.619	0.00	0.00	41.67	3.02
5109	6934	6.491394	TGAACTACCATTTTGAAAACGTCAG	58.509	36.000	0.00	0.00	37.61	3.51
5110	6935	4.855531	ACTACCATTTTGAAAACGTCAGC	58.144	39.130	0.00	0.00	37.61	4.26
5111	6936	3.791973	ACCATTTTGAAAACGTCAGCA	57.208	38.095	0.00	0.00	37.61	4.41
5114	6939	4.328712	ACCATTTTGAAAACGTCAGCAAAC	59.671	37.500	8.55	0.00	37.61	2.93
5152	6977	4.452455	GCTAATATCGTTGCAAGGCACTAT	59.548	41.667	14.22	8.19	38.49	2.12
5192	7026	7.507304	AGACGATTTAAACGTGTTTATGACAG	58.493	34.615	16.72	1.56	43.97	3.51
5195	7029	2.961522	AAACGTGTTTATGACAGGCG	57.038	45.000	0.00	0.00	45.64	5.52
5196	7030	1.153353	AACGTGTTTATGACAGGCGG	58.847	50.000	0.00	0.00	45.64	6.13
5231	7065	1.251251	GCTGATGTGGCAGGAAAGTT	58.749	50.000	0.00	0.00	36.41	2.66
5243	7077	3.666111	GCAGGAAAGTTAACGCCGTTTAG	60.666	47.826	8.19	0.00	0.00	1.85
5294	7129	2.352422	GGCCACAGGTCAGCATCA	59.648	61.111	0.00	0.00	0.00	3.07
5302	7137	2.289945	ACAGGTCAGCATCAACCTTCTC	60.290	50.000	0.00	0.00	43.45	2.87
5303	7138	2.027377	CAGGTCAGCATCAACCTTCTCT	60.027	50.000	0.00	0.00	43.45	3.10
5308	7143	1.836802	AGCATCAACCTTCTCTCTCCC	59.163	52.381	0.00	0.00	0.00	4.30
5314	7149	1.074850	CCTTCTCTCTCCCCCTCCC	60.075	68.421	0.00	0.00	0.00	4.30
5315	7150	1.598856	CCTTCTCTCTCCCCCTCCCT	61.599	65.000	0.00	0.00	0.00	4.20
5317	7152	1.595058	TTCTCTCTCCCCCTCCCTCC	61.595	65.000	0.00	0.00	0.00	4.30
5318	7153	3.430497	TCTCTCCCCCTCCCTCCG	61.430	72.222	0.00	0.00	0.00	4.63
5319	7154	3.756783	CTCTCCCCCTCCCTCCGT	61.757	72.222	0.00	0.00	0.00	4.69
5320	7155	3.742248	CTCTCCCCCTCCCTCCGTC	62.742	73.684	0.00	0.00	0.00	4.79
5321	7156	3.756783	CTCCCCCTCCCTCCGTCT	61.757	72.222	0.00	0.00	0.00	4.18
5323	7158	4.862823	CCCCCTCCCTCCGTCTCC	62.863	77.778	0.00	0.00	0.00	3.71
5326	7161	4.862823	CCTCCCTCCGTCTCCCCC	62.863	77.778	0.00	0.00	0.00	5.40
5361	7248	4.892345	TCTCTCTCTCTCTCTCTCTCTCTG	59.108	50.000	0.00	0.00	0.00	3.35
5362	7249	3.963374	TCTCTCTCTCTCTCTCTCTCTGG	59.037	52.174	0.00	0.00	0.00	3.86
5363	7250	3.708631	CTCTCTCTCTCTCTCTCTCTGGT	59.291	52.174	0.00	0.00	0.00	4.00
5364	7251	4.878968	TCTCTCTCTCTCTCTCTCTGGTA	58.121	47.826	0.00	0.00	0.00	3.25
5365	7252	5.277250	TCTCTCTCTCTCTCTCTCTGGTAA	58.723	45.833	0.00	0.00	0.00	2.85
5367	7254	6.386927	TCTCTCTCTCTCTCTCTCTGGTAATT	59.613	42.308	0.00	0.00	0.00	1.40
5368	7255	6.591935	TCTCTCTCTCTCTCTCTGGTAATTC	58.408	44.000	0.00	0.00	0.00	2.17
5369	7256	6.157820	TCTCTCTCTCTCTCTCTGGTAATTCA	59.842	42.308	0.00	0.00	0.00	2.57
5370	7257	6.726379	TCTCTCTCTCTCTCTGGTAATTCAA	58.274	40.000	0.00	0.00	0.00	2.69
5372	7259	6.249192	TCTCTCTCTCTCTGGTAATTCAACA	58.751	40.000	0.00	0.00	0.00	3.33
5373	7260	6.721668	TCTCTCTCTCTCTGGTAATTCAACAA	59.278	38.462	0.00	0.00	0.00	2.83
5374	7261	7.233553	TCTCTCTCTCTCTGGTAATTCAACAAA	59.766	37.037	0.00	0.00	0.00	2.83
5377	7264	7.155328	TCTCTCTCTGGTAATTCAACAAACTC	58.845	38.462	0.00	0.00	0.00	3.01
5379	7266	7.155328	TCTCTCTGGTAATTCAACAAACTCTC	58.845	38.462	0.00	0.00	0.00	3.20
5380	7267	6.231211	TCTCTGGTAATTCAACAAACTCTCC	58.769	40.000	0.00	0.00	0.00	3.71
5381	7268	6.043243	TCTCTGGTAATTCAACAAACTCTCCT	59.957	38.462	0.00	0.00	0.00	3.69
5390	7291	4.414182	TCAACAAACTCTCCTTCCCCTTTA	59.586	41.667	0.00	0.00	0.00	1.85
5392	7293	5.600669	ACAAACTCTCCTTCCCCTTTAAT	57.399	39.130	0.00	0.00	0.00	1.40
5397	7298	4.796265	ACTCTCCTTCCCCTTTAATGGATT	59.204	41.667	8.94	0.00	0.00	3.01
5407	7308	3.132824	CCTTTAATGGATTTCAGGCCACC	59.867	47.826	5.01	0.00	36.92	4.61
5463	7419	9.846248	GCCAAATATGTAATTTATGATCACCTC	57.154	33.333	0.00	0.00	0.00	3.85
5485	7441	4.419875	TCCCAAATGGATGATGGATTACCT	59.580	41.667	0.00	0.00	38.61	3.08
5531	7487	4.540824	GATGCGGAATTTCCTTAATCTGC	58.459	43.478	13.45	7.87	33.30	4.26
5540	7496	8.864087	GGAATTTCCTTAATCTGCCTATTGAAT	58.136	33.333	8.25	0.00	32.53	2.57
5546	7502	8.686334	TCCTTAATCTGCCTATTGAATTTCAAC	58.314	33.333	13.80	2.70	39.45	3.18
5570	7527	3.008835	AGTATAGTCGGGTGTGCTACA	57.991	47.619	0.00	0.00	0.00	2.74
5591	7548	8.844244	GCTACATTTCCTCATGATGAAATTAGT	58.156	33.333	26.81	24.02	38.73	2.24
5636	7593	2.766651	TCCCGTCCCAGGTATGCC	60.767	66.667	0.00	0.00	0.00	4.40
5656	7613	4.573201	TGCCAGTGTTGTTCTGTTAGTTAC	59.427	41.667	0.00	0.00	0.00	2.50
5775	7935	5.598417	AGGATGTATGTACTATGTGTGCTGA	59.402	40.000	0.00	0.00	32.31	4.26
5778	7938	8.088365	GGATGTATGTACTATGTGTGCTGATAA	58.912	37.037	0.00	0.00	32.31	1.75
5792	7965	6.542370	GTGTGCTGATAATAGTATTGGTTGGT	59.458	38.462	5.61	0.00	0.00	3.67
5803	7976	4.707448	AGTATTGGTTGGTGTGTTTTGTCA	59.293	37.500	0.00	0.00	0.00	3.58
5817	7990	5.007626	GTGTTTTGTCAGCTGTCACTATTCA	59.992	40.000	13.37	6.34	0.00	2.57
5832	8005	6.094603	GTCACTATTCAAGTTGCATCCTTCAT	59.905	38.462	0.00	0.00	35.76	2.57
5834	8007	6.750501	CACTATTCAAGTTGCATCCTTCATTG	59.249	38.462	0.00	0.00	35.76	2.82
5877	8051	4.748277	AGTTTTATGACTAAGCGCCCTA	57.252	40.909	2.29	0.00	0.00	3.53
5890	8064	1.027357	CGCCCTAAGCATGAGCATTT	58.973	50.000	0.00	0.00	45.49	2.32
5896	8070	4.497006	CCCTAAGCATGAGCATTTTCTTCG	60.497	45.833	0.00	0.00	45.49	3.79
5897	8071	4.095483	CCTAAGCATGAGCATTTTCTTCGT	59.905	41.667	0.00	0.00	45.49	3.85
5902	8076	5.182001	AGCATGAGCATTTTCTTCGTTAAGT	59.818	36.000	0.00	0.00	45.49	2.24
5918	8092	5.128171	TCGTTAAGTTGTATGGCAGTATCCT	59.872	40.000	0.00	0.00	0.00	3.24
5919	8093	5.815740	CGTTAAGTTGTATGGCAGTATCCTT	59.184	40.000	0.00	0.00	0.00	3.36
5949	8123	6.598503	TCATATTCCTGATCAAGATGCAGTT	58.401	36.000	0.00	0.00	0.00	3.16
5950	8124	6.485648	TCATATTCCTGATCAAGATGCAGTTG	59.514	38.462	0.00	5.41	0.00	3.16
6005	8179	5.827797	TCCCAACTTGTATATTGAATGGAGC	59.172	40.000	0.00	0.00	0.00	4.70
6066	8245	7.120923	TGGTGTTACCAGATATCTTTCCTAC	57.879	40.000	1.33	0.00	44.79	3.18
6067	8246	6.183360	TGGTGTTACCAGATATCTTTCCTACG	60.183	42.308	1.33	0.00	44.79	3.51
6068	8247	6.183360	GGTGTTACCAGATATCTTTCCTACGT	60.183	42.308	1.33	0.00	38.42	3.57
6069	8248	7.013655	GGTGTTACCAGATATCTTTCCTACGTA	59.986	40.741	1.33	0.00	38.42	3.57
6070	8249	8.574737	GTGTTACCAGATATCTTTCCTACGTAT	58.425	37.037	1.33	0.00	0.00	3.06
6071	8250	9.797642	TGTTACCAGATATCTTTCCTACGTATA	57.202	33.333	1.33	0.00	0.00	1.47
6075	8254	9.584008	ACCAGATATCTTTCCTACGTATAAAGA	57.416	33.333	24.19	24.19	41.89	2.52
6082	8261	8.302515	TCTTTCCTACGTATAAAGATTGGAGT	57.697	34.615	20.78	0.00	35.02	3.85
6083	8262	8.755977	TCTTTCCTACGTATAAAGATTGGAGTT	58.244	33.333	20.78	0.00	35.02	3.01
6084	8263	8.712285	TTTCCTACGTATAAAGATTGGAGTTG	57.288	34.615	0.00	0.00	0.00	3.16
6085	8264	6.812998	TCCTACGTATAAAGATTGGAGTTGG	58.187	40.000	0.00	0.00	0.00	3.77
6086	8265	6.381994	TCCTACGTATAAAGATTGGAGTTGGT	59.618	38.462	0.00	0.00	0.00	3.67
6087	8266	6.479001	CCTACGTATAAAGATTGGAGTTGGTG	59.521	42.308	0.00	0.00	0.00	4.17
6088	8267	5.183228	ACGTATAAAGATTGGAGTTGGTGG	58.817	41.667	0.00	0.00	0.00	4.61
6089	8268	5.183228	CGTATAAAGATTGGAGTTGGTGGT	58.817	41.667	0.00	0.00	0.00	4.16
6090	8269	5.064707	CGTATAAAGATTGGAGTTGGTGGTG	59.935	44.000	0.00	0.00	0.00	4.17
6091	8270	3.593442	AAAGATTGGAGTTGGTGGTGA	57.407	42.857	0.00	0.00	0.00	4.02
6092	8271	2.867109	AGATTGGAGTTGGTGGTGAG	57.133	50.000	0.00	0.00	0.00	3.51
6093	8272	2.057922	AGATTGGAGTTGGTGGTGAGT	58.942	47.619	0.00	0.00	0.00	3.41
6094	8273	2.039084	AGATTGGAGTTGGTGGTGAGTC	59.961	50.000	0.00	0.00	0.00	3.36
6095	8274	0.472471	TTGGAGTTGGTGGTGAGTCC	59.528	55.000	0.00	0.00	36.19	3.85
6096	8275	0.692756	TGGAGTTGGTGGTGAGTCCA	60.693	55.000	0.00	0.00	45.01	4.02
6114	8293	2.586425	CCACATATGGGTCCAACATCC	58.414	52.381	7.80	0.00	43.04	3.51
6115	8294	2.175499	CCACATATGGGTCCAACATCCT	59.825	50.000	7.80	0.00	43.04	3.24
6116	8295	3.373001	CCACATATGGGTCCAACATCCTT	60.373	47.826	7.80	0.00	43.04	3.36
6117	8296	4.280819	CACATATGGGTCCAACATCCTTT	58.719	43.478	7.80	0.00	0.00	3.11
6118	8297	4.711355	CACATATGGGTCCAACATCCTTTT	59.289	41.667	7.80	0.00	0.00	2.27
6119	8298	4.956075	ACATATGGGTCCAACATCCTTTTC	59.044	41.667	7.80	0.00	0.00	2.29
6120	8299	3.541242	ATGGGTCCAACATCCTTTTCA	57.459	42.857	0.00	0.00	0.00	2.69
6121	8300	3.320610	TGGGTCCAACATCCTTTTCAA	57.679	42.857	0.00	0.00	0.00	2.69
6122	8301	3.647636	TGGGTCCAACATCCTTTTCAAA	58.352	40.909	0.00	0.00	0.00	2.69
6123	8302	4.230455	TGGGTCCAACATCCTTTTCAAAT	58.770	39.130	0.00	0.00	0.00	2.32
6124	8303	5.398236	TGGGTCCAACATCCTTTTCAAATA	58.602	37.500	0.00	0.00	0.00	1.40
6125	8304	5.841237	TGGGTCCAACATCCTTTTCAAATAA	59.159	36.000	0.00	0.00	0.00	1.40
6126	8305	6.327626	TGGGTCCAACATCCTTTTCAAATAAA	59.672	34.615	0.00	0.00	0.00	1.40
6127	8306	7.017056	TGGGTCCAACATCCTTTTCAAATAAAT	59.983	33.333	0.00	0.00	0.00	1.40
6128	8307	8.536175	GGGTCCAACATCCTTTTCAAATAAATA	58.464	33.333	0.00	0.00	0.00	1.40
6129	8308	9.936759	GGTCCAACATCCTTTTCAAATAAATAA	57.063	29.630	0.00	0.00	0.00	1.40
6174	8353	4.380843	TGGAATTAGCAACCTTCCAAGA	57.619	40.909	7.37	0.00	44.06	3.02
6175	8354	4.335416	TGGAATTAGCAACCTTCCAAGAG	58.665	43.478	7.37	0.00	44.06	2.85
6176	8355	3.696548	GGAATTAGCAACCTTCCAAGAGG	59.303	47.826	0.00	0.00	42.75	3.69
6177	8356	2.200373	TTAGCAACCTTCCAAGAGGC	57.800	50.000	0.00	0.00	40.65	4.70
6178	8357	1.064003	TAGCAACCTTCCAAGAGGCA	58.936	50.000	0.00	0.00	40.65	4.75
6179	8358	0.407139	AGCAACCTTCCAAGAGGCAT	59.593	50.000	0.00	0.00	40.65	4.40
6180	8359	1.635487	AGCAACCTTCCAAGAGGCATA	59.365	47.619	0.00	0.00	40.65	3.14
6181	8360	2.243221	AGCAACCTTCCAAGAGGCATAT	59.757	45.455	0.00	0.00	40.65	1.78
6182	8361	3.459598	AGCAACCTTCCAAGAGGCATATA	59.540	43.478	0.00	0.00	40.65	0.86
6183	8362	4.079787	AGCAACCTTCCAAGAGGCATATAA	60.080	41.667	0.00	0.00	40.65	0.98
6184	8363	4.644685	GCAACCTTCCAAGAGGCATATAAA	59.355	41.667	0.00	0.00	40.65	1.40
6185	8364	5.450550	GCAACCTTCCAAGAGGCATATAAAC	60.451	44.000	0.00	0.00	40.65	2.01
6186	8365	5.450818	ACCTTCCAAGAGGCATATAAACA	57.549	39.130	0.00	0.00	40.65	2.83
6187	8366	5.826643	ACCTTCCAAGAGGCATATAAACAA	58.173	37.500	0.00	0.00	40.65	2.83
6188	8367	6.252995	ACCTTCCAAGAGGCATATAAACAAA	58.747	36.000	0.00	0.00	40.65	2.83
6189	8368	6.897413	ACCTTCCAAGAGGCATATAAACAAAT	59.103	34.615	0.00	0.00	40.65	2.32
6190	8369	7.147846	ACCTTCCAAGAGGCATATAAACAAATG	60.148	37.037	0.00	0.00	40.65	2.32
6191	8370	7.147846	CCTTCCAAGAGGCATATAAACAAATGT	60.148	37.037	0.00	0.00	33.74	2.71
6192	8371	8.815565	TTCCAAGAGGCATATAAACAAATGTA	57.184	30.769	0.00	0.00	33.74	2.29
6193	8372	8.220755	TCCAAGAGGCATATAAACAAATGTAC	57.779	34.615	0.00	0.00	33.74	2.90
6194	8373	8.052748	TCCAAGAGGCATATAAACAAATGTACT	58.947	33.333	0.00	0.00	33.74	2.73
6195	8374	8.686334	CCAAGAGGCATATAAACAAATGTACTT	58.314	33.333	0.00	0.00	0.00	2.24
6216	8395	7.040473	ACTTTACTCATACTACCTCCATTCG	57.960	40.000	0.00	0.00	0.00	3.34
6217	8396	6.040616	ACTTTACTCATACTACCTCCATTCGG	59.959	42.308	0.00	0.00	0.00	4.30
6218	8397	3.231818	ACTCATACTACCTCCATTCGGG	58.768	50.000	0.00	0.00	38.37	5.14
6219	8398	3.231818	CTCATACTACCTCCATTCGGGT	58.768	50.000	0.00	0.00	39.40	5.28
6220	8399	3.641906	CTCATACTACCTCCATTCGGGTT	59.358	47.826	0.00	0.00	37.07	4.11
6224	8403	6.328148	TCATACTACCTCCATTCGGGTTTATT	59.672	38.462	0.00	0.00	37.07	1.40
6229	8408	4.141551	ACCTCCATTCGGGTTTATTAGTCC	60.142	45.833	0.00	0.00	38.11	3.85
6230	8409	4.386711	CTCCATTCGGGTTTATTAGTCCC	58.613	47.826	0.00	0.00	38.11	4.46
6234	8413	5.298527	CCATTCGGGTTTATTAGTCCCTTTC	59.701	44.000	0.00	0.00	39.10	2.62
6236	8415	3.515104	TCGGGTTTATTAGTCCCTTTCGT	59.485	43.478	0.00	0.00	39.10	3.85
6237	8416	4.709397	TCGGGTTTATTAGTCCCTTTCGTA	59.291	41.667	0.00	0.00	39.10	3.43
6238	8417	5.363580	TCGGGTTTATTAGTCCCTTTCGTAT	59.636	40.000	0.00	0.00	39.10	3.06
6241	8420	7.066163	CGGGTTTATTAGTCCCTTTCGTATTTT	59.934	37.037	0.00	0.00	39.10	1.82
6242	8421	8.186163	GGGTTTATTAGTCCCTTTCGTATTTTG	58.814	37.037	0.00	0.00	38.29	2.44
6243	8422	8.733458	GGTTTATTAGTCCCTTTCGTATTTTGT	58.267	33.333	0.00	0.00	0.00	2.83
6244	8423	9.550811	GTTTATTAGTCCCTTTCGTATTTTGTG	57.449	33.333	0.00	0.00	0.00	3.33
6245	8424	5.616488	TTAGTCCCTTTCGTATTTTGTGC	57.384	39.130	0.00	0.00	0.00	4.57
6246	8425	2.817844	AGTCCCTTTCGTATTTTGTGCC	59.182	45.455	0.00	0.00	0.00	5.01
6248	8427	1.889829	CCCTTTCGTATTTTGTGCCCA	59.110	47.619	0.00	0.00	0.00	5.36
6249	8428	2.297597	CCCTTTCGTATTTTGTGCCCAA	59.702	45.455	0.00	0.00	0.00	4.12
6250	8429	3.313690	CCTTTCGTATTTTGTGCCCAAC	58.686	45.455	0.00	0.00	0.00	3.77
6251	8430	3.005367	CCTTTCGTATTTTGTGCCCAACT	59.995	43.478	0.00	0.00	0.00	3.16
6253	8432	4.657436	TTCGTATTTTGTGCCCAACTTT	57.343	36.364	0.00	0.00	0.00	2.66
6254	8433	3.971150	TCGTATTTTGTGCCCAACTTTG	58.029	40.909	0.00	0.00	0.00	2.77
6256	8435	3.733727	CGTATTTTGTGCCCAACTTTGAC	59.266	43.478	0.00	0.00	0.00	3.18
6257	8436	2.682155	TTTTGTGCCCAACTTTGACC	57.318	45.000	0.00	0.00	0.00	4.02
6258	8437	0.457851	TTTGTGCCCAACTTTGACCG	59.542	50.000	0.00	0.00	0.00	4.79
6259	8438	2.010582	TTGTGCCCAACTTTGACCGC	62.011	55.000	0.00	0.00	0.00	5.68
6260	8439	2.124109	TGCCCAACTTTGACCGCA	60.124	55.556	0.00	0.00	0.00	5.69
6261	8440	2.192861	TGCCCAACTTTGACCGCAG	61.193	57.895	0.00	0.00	0.00	5.18
6282	8461	7.746526	GCAGGTTTGCTTAATGAAATAGAAG	57.253	36.000	0.00	0.00	46.95	2.85
6284	8463	7.814587	GCAGGTTTGCTTAATGAAATAGAAGTT	59.185	33.333	0.00	0.00	46.95	2.66
6285	8464	9.132521	CAGGTTTGCTTAATGAAATAGAAGTTG	57.867	33.333	0.00	0.00	0.00	3.16
6286	8465	8.860088	AGGTTTGCTTAATGAAATAGAAGTTGT	58.140	29.630	0.00	0.00	0.00	3.32
6309	8488	8.903570	TGTATGTCACAAAACTTAAGTTGTTG	57.096	30.769	21.22	23.87	35.81	3.33
6310	8489	7.971168	TGTATGTCACAAAACTTAAGTTGTTGG	59.029	33.333	27.71	21.42	35.81	3.77
6311	8490	6.576662	TGTCACAAAACTTAAGTTGTTGGA	57.423	33.333	27.71	22.46	38.44	3.53
6313	8492	7.607250	TGTCACAAAACTTAAGTTGTTGGATT	58.393	30.769	27.71	16.16	38.44	3.01
6314	8493	7.757624	TGTCACAAAACTTAAGTTGTTGGATTC	59.242	33.333	27.71	20.31	38.44	2.52
6315	8494	7.757624	GTCACAAAACTTAAGTTGTTGGATTCA	59.242	33.333	27.71	15.00	38.44	2.57
6316	8495	8.474025	TCACAAAACTTAAGTTGTTGGATTCAT	58.526	29.630	27.71	15.01	38.44	2.57
6317	8496	9.743057	CACAAAACTTAAGTTGTTGGATTCATA	57.257	29.630	27.71	0.00	38.44	2.15
6327	8506	9.918630	AAGTTGTTGGATTCATATTTGAAAGAG	57.081	29.630	2.59	0.00	44.70	2.85
6328	8507	8.526147	AGTTGTTGGATTCATATTTGAAAGAGG	58.474	33.333	2.59	0.00	44.70	3.69
6330	8509	8.421249	TGTTGGATTCATATTTGAAAGAGGTT	57.579	30.769	2.59	0.00	44.70	3.50
6332	8511	9.710900	GTTGGATTCATATTTGAAAGAGGTTTT	57.289	29.630	2.59	0.00	44.70	2.43
6333	8512	9.927668	TTGGATTCATATTTGAAAGAGGTTTTC	57.072	29.630	2.59	0.00	44.70	2.29
6410	8665	5.432885	AAGTTTGACTCAAAATACGTGGG	57.567	39.130	5.76	0.00	35.03	4.61
6411	8666	3.818773	AGTTTGACTCAAAATACGTGGGG	59.181	43.478	5.76	0.00	35.03	4.96
6412	8667	2.483014	TGACTCAAAATACGTGGGGG	57.517	50.000	0.00	0.00	0.00	5.40
6434	8730	2.169978	GCTAATAAACCAGGACGGAGGT	59.830	50.000	0.00	0.00	40.61	3.85
6439	8735	2.842645	AACCAGGACGGAGGTAGTAT	57.157	50.000	0.00	0.00	37.07	2.12
6440	8736	2.068834	ACCAGGACGGAGGTAGTATG	57.931	55.000	0.00	0.00	36.07	2.39
6442	8738	1.681793	CCAGGACGGAGGTAGTATGTG	59.318	57.143	0.00	0.00	36.56	3.21
6444	8740	2.358267	CAGGACGGAGGTAGTATGTGAC	59.642	54.545	0.00	0.00	0.00	3.67
6446	8742	2.957006	GGACGGAGGTAGTATGTGACAT	59.043	50.000	2.65	2.65	0.00	3.06
6447	8743	3.004524	GGACGGAGGTAGTATGTGACATC	59.995	52.174	0.00	0.00	0.00	3.06
6448	8744	3.884091	GACGGAGGTAGTATGTGACATCT	59.116	47.826	0.00	2.11	0.00	2.90
6449	8745	5.045012	ACGGAGGTAGTATGTGACATCTA	57.955	43.478	0.00	1.11	0.00	1.98
6450	8746	5.632118	ACGGAGGTAGTATGTGACATCTAT	58.368	41.667	0.00	0.00	0.00	1.98
6451	8747	5.706369	ACGGAGGTAGTATGTGACATCTATC	59.294	44.000	0.00	4.46	0.00	2.08
6453	8749	6.128145	CGGAGGTAGTATGTGACATCTATCAG	60.128	46.154	0.00	0.00	0.00	2.90
6455	8751	7.448777	GGAGGTAGTATGTGACATCTATCAGAA	59.551	40.741	0.00	0.00	0.00	3.02
6456	8752	8.768501	AGGTAGTATGTGACATCTATCAGAAA	57.231	34.615	0.00	0.00	0.00	2.52
6457	8753	8.855110	AGGTAGTATGTGACATCTATCAGAAAG	58.145	37.037	0.00	0.00	0.00	2.62
6461	8757	9.593134	AGTATGTGACATCTATCAGAAAGAAAC	57.407	33.333	0.00	0.00	0.00	2.78
6488	8854	5.818678	ACACTACTTTTATGTGAGACCCA	57.181	39.130	0.00	0.00	35.83	4.51
6489	8855	5.548406	ACACTACTTTTATGTGAGACCCAC	58.452	41.667	0.00	0.00	45.88	4.61
6491	8857	6.183361	ACACTACTTTTATGTGAGACCCACTT	60.183	38.462	0.00	0.00	45.86	3.16
6493	8859	7.228706	CACTACTTTTATGTGAGACCCACTTTT	59.771	37.037	0.00	0.00	45.86	2.27
6520	8886	9.436957	TTTTGTAAAAGGCACAAATAACAAAGA	57.563	25.926	2.24	0.00	43.39	2.52
6528	8894	9.777297	AAGGCACAAATAACAAAGATAAAATGT	57.223	25.926	0.00	0.00	0.00	2.71
6529	8895	9.206870	AGGCACAAATAACAAAGATAAAATGTG	57.793	29.630	0.00	0.00	37.93	3.21
6549	8915	9.612620	AAATGTGACTTCAACTAAAAATCGATC	57.387	29.630	0.00	0.00	0.00	3.69
6550	8916	7.962964	TGTGACTTCAACTAAAAATCGATCT	57.037	32.000	0.00	0.00	0.00	2.75
6551	8917	8.378172	TGTGACTTCAACTAAAAATCGATCTT	57.622	30.769	0.00	0.00	0.00	2.40
6552	8918	8.282592	TGTGACTTCAACTAAAAATCGATCTTG	58.717	33.333	0.00	0.00	0.00	3.02
6553	8919	7.746475	GTGACTTCAACTAAAAATCGATCTTGG	59.254	37.037	0.00	0.05	0.00	3.61
6566	8932	9.454859	AAAATCGATCTTGGTTTTAGATCTCTT	57.545	29.630	0.00	2.64	43.72	2.85
6568	8934	6.574350	TCGATCTTGGTTTTAGATCTCTTCC	58.426	40.000	0.00	0.00	43.72	3.46
6569	8935	5.755861	CGATCTTGGTTTTAGATCTCTTCCC	59.244	44.000	0.00	0.00	43.72	3.97
6570	8936	6.630413	CGATCTTGGTTTTAGATCTCTTCCCA	60.630	42.308	0.00	0.00	43.72	4.37
6572	8938	7.032598	TCTTGGTTTTAGATCTCTTCCCAAT	57.967	36.000	13.93	0.00	30.93	3.16
6573	8939	7.112779	TCTTGGTTTTAGATCTCTTCCCAATC	58.887	38.462	13.93	0.00	30.93	2.67
6574	8940	6.642733	TGGTTTTAGATCTCTTCCCAATCT	57.357	37.500	0.00	0.00	34.29	2.40
6575	8941	7.749377	TGGTTTTAGATCTCTTCCCAATCTA	57.251	36.000	0.00	0.00	32.25	1.98
6576	8942	7.565680	TGGTTTTAGATCTCTTCCCAATCTAC	58.434	38.462	0.00	0.00	33.02	2.59
6577	8943	7.403231	TGGTTTTAGATCTCTTCCCAATCTACT	59.597	37.037	0.00	0.00	33.02	2.57
6578	8944	8.925338	GGTTTTAGATCTCTTCCCAATCTACTA	58.075	37.037	0.00	0.00	33.02	1.82
6585	8951	9.474313	GATCTCTTCCCAATCTACTATAGTCAT	57.526	37.037	9.12	0.00	0.00	3.06
6587	8953	9.661954	TCTCTTCCCAATCTACTATAGTCATTT	57.338	33.333	9.12	0.00	0.00	2.32
6605	8971	7.244192	AGTCATTTAAAATTCTCTAACGCTGC	58.756	34.615	0.00	0.00	0.00	5.25
6606	8972	7.021196	GTCATTTAAAATTCTCTAACGCTGCA	58.979	34.615	0.00	0.00	0.00	4.41
6608	8974	8.888716	TCATTTAAAATTCTCTAACGCTGCATA	58.111	29.630	0.00	0.00	0.00	3.14
6609	8975	9.669353	CATTTAAAATTCTCTAACGCTGCATAT	57.331	29.630	0.00	0.00	0.00	1.78
6610	8976	9.884465	ATTTAAAATTCTCTAACGCTGCATATC	57.116	29.630	0.00	0.00	0.00	1.63
6611	8977	8.662781	TTAAAATTCTCTAACGCTGCATATCT	57.337	30.769	0.00	0.00	0.00	1.98
6612	8978	6.777526	AAATTCTCTAACGCTGCATATCTC	57.222	37.500	0.00	0.00	0.00	2.75
6613	8979	5.720371	ATTCTCTAACGCTGCATATCTCT	57.280	39.130	0.00	0.00	0.00	3.10
6614	8980	4.757799	TCTCTAACGCTGCATATCTCTC	57.242	45.455	0.00	0.00	0.00	3.20
6615	8981	4.137543	TCTCTAACGCTGCATATCTCTCA	58.862	43.478	0.00	0.00	0.00	3.27
6616	8982	4.023622	TCTCTAACGCTGCATATCTCTCAC	60.024	45.833	0.00	0.00	0.00	3.51
6617	8983	2.231215	AACGCTGCATATCTCTCACC	57.769	50.000	0.00	0.00	0.00	4.02
6618	8984	0.031314	ACGCTGCATATCTCTCACCG	59.969	55.000	0.00	0.00	0.00	4.94
6622	8988	3.612717	CGCTGCATATCTCTCACCGTATT	60.613	47.826	0.00	0.00	0.00	1.89
6624	8990	4.752101	GCTGCATATCTCTCACCGTATTTT	59.248	41.667	0.00	0.00	0.00	1.82
6627	8993	5.007626	TGCATATCTCTCACCGTATTTTTGC	59.992	40.000	0.00	0.00	0.00	3.68
6629	8995	6.423905	GCATATCTCTCACCGTATTTTTGCTA	59.576	38.462	0.00	0.00	0.00	3.49
6630	8996	7.042051	GCATATCTCTCACCGTATTTTTGCTAA	60.042	37.037	0.00	0.00	0.00	3.09
6631	8997	8.826710	CATATCTCTCACCGTATTTTTGCTAAA	58.173	33.333	0.00	0.00	0.00	1.85
6633	8999	7.681939	TCTCTCACCGTATTTTTGCTAAATT	57.318	32.000	0.00	0.00	0.00	1.82
6635	9001	8.573035	TCTCTCACCGTATTTTTGCTAAATTTT	58.427	29.630	0.00	0.00	0.00	1.82
6636	9002	8.736751	TCTCACCGTATTTTTGCTAAATTTTC	57.263	30.769	0.00	0.00	0.00	2.29
6637	9003	8.573035	TCTCACCGTATTTTTGCTAAATTTTCT	58.427	29.630	0.00	0.00	0.00	2.52
6638	9004	9.834628	CTCACCGTATTTTTGCTAAATTTTCTA	57.165	29.630	0.00	0.00	0.00	2.10
6656	9022	8.874745	ATTTTCTAATCGTAAATCACACAACG	57.125	30.769	0.00	0.00	36.71	4.10
6657	9023	6.397831	TTCTAATCGTAAATCACACAACGG	57.602	37.500	0.00	0.00	36.08	4.44
6658	9024	5.472148	TCTAATCGTAAATCACACAACGGT	58.528	37.500	0.00	0.00	36.08	4.83
6659	9025	4.657075	AATCGTAAATCACACAACGGTC	57.343	40.909	0.00	0.00	36.08	4.79
6660	9026	3.095102	TCGTAAATCACACAACGGTCA	57.905	42.857	0.00	0.00	36.08	4.02
6661	9027	3.655486	TCGTAAATCACACAACGGTCAT	58.345	40.909	0.00	0.00	36.08	3.06
6662	9028	4.807443	TCGTAAATCACACAACGGTCATA	58.193	39.130	0.00	0.00	36.08	2.15
6663	9029	5.228665	TCGTAAATCACACAACGGTCATAA	58.771	37.500	0.00	0.00	36.08	1.90
6664	9030	5.695363	TCGTAAATCACACAACGGTCATAAA	59.305	36.000	0.00	0.00	36.08	1.40
6665	9031	6.013085	CGTAAATCACACAACGGTCATAAAG	58.987	40.000	0.00	0.00	0.00	1.85
6666	9032	6.128769	CGTAAATCACACAACGGTCATAAAGA	60.129	38.462	0.00	0.00	0.00	2.52
6667	9033	6.627395	AAATCACACAACGGTCATAAAGAA	57.373	33.333	0.00	0.00	0.00	2.52
6668	9034	5.607119	ATCACACAACGGTCATAAAGAAC	57.393	39.130	0.00	0.00	0.00	3.01
6669	9035	4.443621	TCACACAACGGTCATAAAGAACA	58.556	39.130	0.00	0.00	31.63	3.18
6670	9036	4.271533	TCACACAACGGTCATAAAGAACAC	59.728	41.667	0.00	0.00	31.63	3.32
6671	9037	4.272504	CACACAACGGTCATAAAGAACACT	59.727	41.667	0.00	0.00	31.63	3.55
6672	9038	5.464057	CACACAACGGTCATAAAGAACACTA	59.536	40.000	0.00	0.00	31.63	2.74
6673	9039	6.018588	CACACAACGGTCATAAAGAACACTAA	60.019	38.462	0.00	0.00	31.63	2.24
6674	9040	6.018507	ACACAACGGTCATAAAGAACACTAAC	60.019	38.462	0.00	0.00	31.63	2.34
6675	9041	6.018588	CACAACGGTCATAAAGAACACTAACA	60.019	38.462	0.00	0.00	31.63	2.41
6676	9042	6.708949	ACAACGGTCATAAAGAACACTAACAT	59.291	34.615	0.00	0.00	31.63	2.71
6678	9044	8.714179	CAACGGTCATAAAGAACACTAACATTA	58.286	33.333	0.00	0.00	31.63	1.90
6679	9045	9.444600	AACGGTCATAAAGAACACTAACATTAT	57.555	29.630	0.00	0.00	31.63	1.28
6680	9046	9.444600	ACGGTCATAAAGAACACTAACATTATT	57.555	29.630	0.00	0.00	31.63	1.40
6688	9054	7.448748	AGAACACTAACATTATTTCACCACC	57.551	36.000	0.00	0.00	0.00	4.61
6689	9055	7.231467	AGAACACTAACATTATTTCACCACCT	58.769	34.615	0.00	0.00	0.00	4.00
6690	9056	7.390718	AGAACACTAACATTATTTCACCACCTC	59.609	37.037	0.00	0.00	0.00	3.85
6691	9057	5.944007	ACACTAACATTATTTCACCACCTCC	59.056	40.000	0.00	0.00	0.00	4.30
6692	9058	5.943416	CACTAACATTATTTCACCACCTCCA	59.057	40.000	0.00	0.00	0.00	3.86
6693	9059	6.432783	CACTAACATTATTTCACCACCTCCAA	59.567	38.462	0.00	0.00	0.00	3.53
6694	9060	5.982890	AACATTATTTCACCACCTCCAAG	57.017	39.130	0.00	0.00	0.00	3.61
6696	9062	2.507407	TATTTCACCACCTCCAAGCC	57.493	50.000	0.00	0.00	0.00	4.35
6698	9064	0.260230	TTTCACCACCTCCAAGCCAA	59.740	50.000	0.00	0.00	0.00	4.52
6699	9065	0.482446	TTCACCACCTCCAAGCCAAT	59.518	50.000	0.00	0.00	0.00	3.16
6700	9066	0.251297	TCACCACCTCCAAGCCAATG	60.251	55.000	0.00	0.00	0.00	2.82
6701	9067	1.077265	ACCACCTCCAAGCCAATGG	59.923	57.895	0.00	0.00	42.12	3.16
6703	9069	0.967380	CCACCTCCAAGCCAATGGTC	60.967	60.000	0.00	0.00	41.46	4.02
6706	9072	1.308069	CCTCCAAGCCAATGGTCACG	61.308	60.000	0.00	0.00	41.46	4.35
6707	9073	0.606401	CTCCAAGCCAATGGTCACGT	60.606	55.000	0.00	0.00	41.46	4.49
6708	9074	0.888736	TCCAAGCCAATGGTCACGTG	60.889	55.000	9.94	9.94	41.46	4.49
6709	9075	1.580942	CAAGCCAATGGTCACGTGG	59.419	57.895	17.00	0.00	0.00	4.94
6710	9076	2.268076	AAGCCAATGGTCACGTGGC	61.268	57.895	17.00	15.01	45.30	5.01
6711	9077	2.983030	GCCAATGGTCACGTGGCA	60.983	61.111	23.45	8.65	44.42	4.92
6712	9078	2.560119	GCCAATGGTCACGTGGCAA	61.560	57.895	23.45	12.14	44.42	4.52
6714	9080	0.109179	CCAATGGTCACGTGGCAATG	60.109	55.000	23.45	16.19	0.00	2.82
6715	9081	0.733566	CAATGGTCACGTGGCAATGC	60.734	55.000	23.45	4.71	0.00	3.56
6716	9082	1.177895	AATGGTCACGTGGCAATGCA	61.178	50.000	23.45	11.00	0.00	3.96
6717	9083	1.865788	ATGGTCACGTGGCAATGCAC	61.866	55.000	23.45	7.63	0.00	4.57
6741	9107	5.574188	GGGCATCTTGATAGGTTATTGGAT	58.426	41.667	0.00	0.00	0.00	3.41
6765	9131	3.788333	TTCATCTTAGTAACCCCGACG	57.212	47.619	0.00	0.00	0.00	5.12
6768	9134	3.763360	TCATCTTAGTAACCCCGACGAAA	59.237	43.478	0.00	0.00	0.00	3.46
6785	9153	2.830321	CGAAAGTAAGAGGGGGTAGTGT	59.170	50.000	0.00	0.00	0.00	3.55
6799	9662	4.306600	GGGTAGTGTTGGAAAATGCTTTG	58.693	43.478	0.00	0.00	0.00	2.77
6802	9665	4.470334	AGTGTTGGAAAATGCTTTGTGT	57.530	36.364	0.00	0.00	0.00	3.72
6825	9688	2.476241	GACAAAGAAAAATGGCTTGGCG	59.524	45.455	0.00	0.00	0.00	5.69
6826	9689	1.799994	CAAAGAAAAATGGCTTGGCGG	59.200	47.619	0.00	0.00	0.00	6.13
6827	9690	1.047801	AAGAAAAATGGCTTGGCGGT	58.952	45.000	0.00	0.00	0.00	5.68
6829	9692	0.033366	GAAAAATGGCTTGGCGGTGT	59.967	50.000	0.00	0.00	0.00	4.16
6841	9715	1.879380	TGGCGGTGTTCTGAATTCAAG	59.121	47.619	9.88	4.26	0.00	3.02
6851	9725	6.706270	GTGTTCTGAATTCAAGTTAGGTCTGA	59.294	38.462	9.88	0.00	0.00	3.27
6881	9755	4.096732	ACTGTTCTTGTCTTTGTTGTGC	57.903	40.909	0.00	0.00	0.00	4.57
6915	9798	8.566260	GGCATGGCATATAGAATCTTCAATATC	58.434	37.037	15.47	0.00	0.00	1.63
6986	9869	3.380320	GTCCACCACATTTGTTATAGCCC	59.620	47.826	0.00	0.00	0.00	5.19
6994	9878	5.010012	CACATTTGTTATAGCCCTGAATCCC	59.990	44.000	0.00	0.00	0.00	3.85
7020	9926	5.918426	ATCCAATGTGTGCAATTATGACA	57.082	34.783	0.00	0.00	0.00	3.58
7021	9927	5.718724	TCCAATGTGTGCAATTATGACAA	57.281	34.783	0.00	0.00	0.00	3.18
7025	9931	8.309656	TCCAATGTGTGCAATTATGACAAAATA	58.690	29.630	0.00	0.00	0.00	1.40
7026	9932	9.100554	CCAATGTGTGCAATTATGACAAAATAT	57.899	29.630	0.00	0.00	0.00	1.28
7070	9987	9.140286	CACATTTGACGTTAAGATTTCTCTCTA	57.860	33.333	0.00	0.00	0.00	2.43
7138	10055	1.065854	AGCATGACAAGGCACTAGGAC	60.066	52.381	0.00	0.00	38.49	3.85
7197	12500	5.239525	GGTTGTGAAGAGAACACTAGCAAAT	59.760	40.000	0.00	0.00	39.65	2.32
7266	12569	6.260493	CAGATTTTGAGAAGCATAGGAAGGAG	59.740	42.308	0.00	0.00	0.00	3.69
7314	12617	1.079819	CGGTGTGAAGATCGGCAGT	60.080	57.895	0.00	0.00	0.00	4.40
7347	12650	2.253758	CCTTGTGTGGTGCCTGTCG	61.254	63.158	0.00	0.00	0.00	4.35
7472	12775	1.004560	CAGAAGCGGAGGTCAGCAA	60.005	57.895	4.90	0.00	39.54	3.91
7479	12782	2.343758	GAGGTCAGCAACGCCTCA	59.656	61.111	10.45	0.00	45.93	3.86
7520	12823	0.030235	CGTGGCTACATCGATTCGGA	59.970	55.000	6.18	0.00	0.00	4.55
7521	12824	1.772182	GTGGCTACATCGATTCGGAG	58.228	55.000	6.18	0.00	0.00	4.63
7547	12850	0.761187	TCAGAGTGTGGAAGCAAGCT	59.239	50.000	0.00	0.00	0.00	3.74
7777	13426	3.393941	GAGGACCATCCCTTCAGATGAAT	59.606	47.826	3.14	0.00	45.43	2.57
7779	13428	5.168679	AGGACCATCCCTTCAGATGAATAT	58.831	41.667	3.14	0.00	45.43	1.28
7802	13451	5.500234	TGCTCATGCTTCCTAAACTACATT	58.500	37.500	0.00	0.00	40.48	2.71
7809	13458	7.011499	TGCTTCCTAAACTACATTTCACCTA	57.989	36.000	0.00	0.00	0.00	3.08
7829	13478	3.634397	AAATGTCTAGCAGGCTAGCAA	57.366	42.857	20.74	12.69	44.10	3.91
7858	13507	3.119531	TGGCTTTCCGAATAAACATGCAG	60.120	43.478	0.00	0.00	34.14	4.41
7859	13508	3.119495	GGCTTTCCGAATAAACATGCAGT	60.119	43.478	0.00	0.00	0.00	4.40
7861	13510	4.324402	GCTTTCCGAATAAACATGCAGTTG	59.676	41.667	0.00	0.00	41.19	3.16
7862	13511	5.446143	TTTCCGAATAAACATGCAGTTGT	57.554	34.783	0.00	0.00	41.19	3.32
7863	13512	4.678509	TCCGAATAAACATGCAGTTGTC	57.321	40.909	0.00	0.00	41.19	3.18
7864	13513	4.068599	TCCGAATAAACATGCAGTTGTCA	58.931	39.130	0.00	0.00	41.19	3.58
7865	13514	4.699735	TCCGAATAAACATGCAGTTGTCAT	59.300	37.500	0.00	0.00	41.19	3.06
7866	13515	4.794762	CCGAATAAACATGCAGTTGTCATG	59.205	41.667	12.04	12.04	44.99	3.07
7921	13573	6.207221	TGAAAAGCAAGAATAAGATGTGCTCA	59.793	34.615	0.00	0.00	44.52	4.26
7927	13579	7.012138	AGCAAGAATAAGATGTGCTCATGTAAG	59.988	37.037	5.89	0.00	41.62	2.34
7943	13595	6.504398	TCATGTAAGGTGAATCGTATGTCTC	58.496	40.000	0.00	0.00	0.00	3.36
7944	13596	5.258456	TGTAAGGTGAATCGTATGTCTCC	57.742	43.478	0.00	0.00	0.00	3.71
7954	13606	6.640907	TGAATCGTATGTCTCCGTGAAATATG	59.359	38.462	0.00	0.00	34.60	1.78
7962	13614	7.709269	TGTCTCCGTGAAATATGTAATAAGC	57.291	36.000	0.00	0.00	29.06	3.09
7963	13615	7.269316	TGTCTCCGTGAAATATGTAATAAGCA	58.731	34.615	0.00	0.00	29.06	3.91
8068	13723	1.229359	CATGCCAGGGCCATCTTCT	59.771	57.895	6.18	0.00	41.09	2.85
8081	13736	2.648059	CATCTTCTCAAATTCGGGGCT	58.352	47.619	0.00	0.00	0.00	5.19
8101	13756	3.127376	GCTCCGGGCGAAAAACTAAAATA	59.873	43.478	0.00	0.00	0.00	1.40
8112	13767	6.876789	CGAAAAACTAAAATAGGGCCCAAATT	59.123	34.615	27.56	20.23	0.00	1.82
8127	13782	6.151004	GGCCCAAATTTTTGAACAATTCATG	58.849	36.000	4.63	0.00	40.55	3.07
8166	13821	8.484641	AATATGCGTAATGGATACTCTCATTG	57.515	34.615	0.00	0.00	33.32	2.82
8178	13833	7.933577	TGGATACTCTCATTGGATTACATGTTC	59.066	37.037	2.30	0.00	37.61	3.18
8250	13906	2.376855	TGGAAACATGGGTGATACCACA	59.623	45.455	0.00	0.00	44.72	4.17
8409	14110	4.641989	GGCAATATTAGATGCGGATGGAAT	59.358	41.667	0.00	0.00	43.47	3.01
8420	14121	2.685522	GCGGATGGAATAGGGGTCAAAA	60.686	50.000	0.00	0.00	0.00	2.44
8435	14136	2.494870	GTCAAAATGCTCAGGCTTGGAT	59.505	45.455	0.00	0.00	39.59	3.41
8463	14172	6.774354	AAATCATGCATGTTGACAAAACTC	57.226	33.333	25.43	0.00	0.00	3.01
8573	14282	6.859017	TCTTTACCTTTCGGCCAAAATATTC	58.141	36.000	2.24	0.00	0.00	1.75
8687	14399	3.624326	TGCAAACCGAAATCACTGAAG	57.376	42.857	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	1.211457	CCCACTTCCATCTTCCTCCTG	59.789	57.143	0.00	0.00	0.00	3.86
95	96	1.135774	TCAATCTCTCGAACACGGACG	60.136	52.381	0.00	0.00	0.00	4.79
101	102	4.639135	ATCACGATCAATCTCTCGAACA	57.361	40.909	0.00	0.00	38.24	3.18
109	110	7.551974	AGTGAGAAAATCAATCACGATCAATCT	59.448	33.333	0.00	0.00	46.25	2.40
167	384	2.386661	TGAACGGATCAGAGCTTTCC	57.613	50.000	0.00	0.00	33.04	3.13
266	486	1.144093	TCGTCCCACCATTTTGAACCT	59.856	47.619	0.00	0.00	0.00	3.50
268	488	3.719173	TTTCGTCCCACCATTTTGAAC	57.281	42.857	0.00	0.00	0.00	3.18
271	491	5.407084	GGTTTATTTTCGTCCCACCATTTTG	59.593	40.000	0.00	0.00	0.00	2.44
296	516	4.220821	TCAGAGTTGGTGAATAGACTCCAC	59.779	45.833	0.00	0.00	39.39	4.02
326	546	9.476928	TTTAGGAAGCACTAGTTATCTCTACTT	57.523	33.333	0.00	0.00	0.00	2.24
349	569	4.069304	CGAATGGAGAGGTTGTGGTTTTA	58.931	43.478	0.00	0.00	0.00	1.52
639	886	1.921887	GTAATCGACGGCATGTTCGAA	59.078	47.619	16.57	0.00	35.09	3.71
701	949	5.630415	AGCACCTTTAATATACTGAGCCA	57.370	39.130	0.00	0.00	0.00	4.75
765	1021	3.110178	GTCCGTAGCACGCACACC	61.110	66.667	3.56	0.00	40.91	4.16
824	1080	3.701532	TTTTGTTGTGCTTCCTTACCG	57.298	42.857	0.00	0.00	0.00	4.02
926	1190	2.435059	GACTGCGAGGTGGCTTCC	60.435	66.667	0.00	0.00	0.00	3.46
945	1209	2.036006	GCGGTGCGTTGGATTGGTA	61.036	57.895	0.00	0.00	0.00	3.25
1062	1348	0.457035	GGATGACGTACTTGCCGGTA	59.543	55.000	1.90	0.00	0.00	4.02
1748	2035	9.294030	CCATCTCAACAGATTGCTATTTTAAAC	57.706	33.333	0.00	0.00	37.25	2.01
1769	2056	4.560739	TCCCTCATGAGTCATTACCATCT	58.439	43.478	21.11	0.00	0.00	2.90
1793	2080	2.236395	TCAAACCCCCGCAAAAGAAAAA	59.764	40.909	0.00	0.00	0.00	1.94
1794	2081	1.831736	TCAAACCCCCGCAAAAGAAAA	59.168	42.857	0.00	0.00	0.00	2.29
1795	2082	1.486211	TCAAACCCCCGCAAAAGAAA	58.514	45.000	0.00	0.00	0.00	2.52
1796	2083	1.710816	ATCAAACCCCCGCAAAAGAA	58.289	45.000	0.00	0.00	0.00	2.52
1797	2084	1.616374	GAATCAAACCCCCGCAAAAGA	59.384	47.619	0.00	0.00	0.00	2.52
1798	2085	1.342819	TGAATCAAACCCCCGCAAAAG	59.657	47.619	0.00	0.00	0.00	2.27
1799	2086	1.414158	TGAATCAAACCCCCGCAAAA	58.586	45.000	0.00	0.00	0.00	2.44
1800	2087	1.274728	CATGAATCAAACCCCCGCAAA	59.725	47.619	0.00	0.00	0.00	3.68
1801	2088	0.894141	CATGAATCAAACCCCCGCAA	59.106	50.000	0.00	0.00	0.00	4.85
1802	2089	0.038890	TCATGAATCAAACCCCCGCA	59.961	50.000	0.00	0.00	0.00	5.69
1803	2090	0.740737	CTCATGAATCAAACCCCCGC	59.259	55.000	0.00	0.00	0.00	6.13
1804	2091	1.392589	CCTCATGAATCAAACCCCCG	58.607	55.000	0.00	0.00	0.00	5.73
1805	2092	1.287739	TCCCTCATGAATCAAACCCCC	59.712	52.381	0.00	0.00	0.00	5.40
1806	2093	2.826674	TCCCTCATGAATCAAACCCC	57.173	50.000	0.00	0.00	0.00	4.95
1807	2094	6.154363	TGTTAATTCCCTCATGAATCAAACCC	59.846	38.462	0.00	0.00	33.91	4.11
1808	2095	7.093771	ACTGTTAATTCCCTCATGAATCAAACC	60.094	37.037	0.00	0.00	33.91	3.27
1809	2096	7.830739	ACTGTTAATTCCCTCATGAATCAAAC	58.169	34.615	0.00	0.00	33.91	2.93
1810	2097	8.956426	GTACTGTTAATTCCCTCATGAATCAAA	58.044	33.333	0.00	0.00	33.91	2.69
1811	2098	7.556275	GGTACTGTTAATTCCCTCATGAATCAA	59.444	37.037	0.00	0.00	33.91	2.57
1890	2774	4.089493	CCGCATTACGTTAATAGGTGATCG	59.911	45.833	0.00	0.00	41.42	3.69
1900	2784	5.883503	AAGGAAATTCCGCATTACGTTAA	57.116	34.783	6.35	0.00	42.75	2.01
1951	2835	7.965107	GTGATTGTAATCCTAAACTTTGAGCAG	59.035	37.037	2.41	0.00	34.50	4.24
1953	2837	6.961554	CGTGATTGTAATCCTAAACTTTGAGC	59.038	38.462	2.41	0.00	34.50	4.26
1958	2842	7.331193	GTCAGACGTGATTGTAATCCTAAACTT	59.669	37.037	0.00	0.00	34.36	2.66
1968	2852	5.293560	TGACAATGTCAGACGTGATTGTAA	58.706	37.500	12.63	7.62	36.47	2.41
1970	2854	3.727726	TGACAATGTCAGACGTGATTGT	58.272	40.909	12.63	14.59	38.20	2.71
1971	2855	4.934075	ATGACAATGTCAGACGTGATTG	57.066	40.909	21.23	9.90	46.04	2.67
1972	2856	4.996758	TCAATGACAATGTCAGACGTGATT	59.003	37.500	21.23	6.29	46.04	2.57
1982	2869	3.369147	CAGAGGACGTCAATGACAATGTC	59.631	47.826	18.91	11.93	32.09	3.06
1986	2873	1.967779	TCCAGAGGACGTCAATGACAA	59.032	47.619	18.91	0.00	32.09	3.18
2010	2897	1.296715	CGGCTGTTTGGCTAGGAGT	59.703	57.895	0.00	0.00	39.32	3.85
2011	2898	0.535335	TACGGCTGTTTGGCTAGGAG	59.465	55.000	1.99	0.00	39.32	3.69
2014	2901	0.108992	TCGTACGGCTGTTTGGCTAG	60.109	55.000	16.52	0.00	39.32	3.42
2015	2902	0.388907	GTCGTACGGCTGTTTGGCTA	60.389	55.000	13.67	0.00	39.32	3.93
2028	2915	5.764192	AGATAGGTAGATCCAACAGTCGTAC	59.236	44.000	0.00	0.00	39.02	3.67
2031	2918	6.655425	TGATAGATAGGTAGATCCAACAGTCG	59.345	42.308	0.00	0.00	39.02	4.18
2087	2976	4.818534	TTACTCACAGACGTCGTAGTTT	57.181	40.909	10.46	0.00	0.00	2.66
2096	2985	7.968956	ACATACTTCTTGTATTACTCACAGACG	59.031	37.037	0.00	0.00	39.66	4.18
2099	2988	9.862371	AGAACATACTTCTTGTATTACTCACAG	57.138	33.333	0.00	0.00	39.66	3.66
2117	3006	7.582435	TCAAGAAGTTGATCGAAGAACATAC	57.418	36.000	11.30	3.94	39.55	2.39
2144	3033	4.040755	AGATATGCCTTCTTGGTAGTGGT	58.959	43.478	0.00	0.00	38.35	4.16
2147	3036	5.957771	TCAAGATATGCCTTCTTGGTAGT	57.042	39.130	15.99	0.00	46.50	2.73
2233	3122	0.250727	TACAGTGGAGCACTTTGCCC	60.251	55.000	0.00	0.00	46.52	5.36
2235	3124	1.946768	TGTTACAGTGGAGCACTTTGC	59.053	47.619	0.00	0.00	42.59	3.68
2236	3125	2.290641	GGTGTTACAGTGGAGCACTTTG	59.709	50.000	20.29	0.00	42.59	2.77
2248	3137	6.202954	CAGAGGAACTTTTACTGGTGTTACAG	59.797	42.308	0.00	0.00	41.55	2.74
2261	3150	5.552178	AGCGAGTATTTCAGAGGAACTTTT	58.448	37.500	0.00	0.00	41.55	2.27
2267	3156	4.021456	TGACAAAGCGAGTATTTCAGAGGA	60.021	41.667	0.00	0.00	0.00	3.71
2269	3158	4.328440	CCTGACAAAGCGAGTATTTCAGAG	59.672	45.833	0.00	0.00	0.00	3.35
2271	3160	4.245660	TCCTGACAAAGCGAGTATTTCAG	58.754	43.478	0.00	0.00	0.00	3.02
2282	3171	6.663944	ACGATAAGTAATTCCTGACAAAGC	57.336	37.500	0.00	0.00	0.00	3.51
2286	3175	9.529325	CATTTCTACGATAAGTAATTCCTGACA	57.471	33.333	0.00	0.00	34.45	3.58
2289	3178	9.712305	ATCCATTTCTACGATAAGTAATTCCTG	57.288	33.333	0.00	0.00	34.45	3.86
2380	3269	7.602644	CAGAATTATTAGCTACGCCCTTCATTA	59.397	37.037	0.00	0.00	0.00	1.90
2382	3271	5.934625	CAGAATTATTAGCTACGCCCTTCAT	59.065	40.000	0.00	0.00	0.00	2.57
2383	3272	5.297547	CAGAATTATTAGCTACGCCCTTCA	58.702	41.667	0.00	0.00	0.00	3.02
2384	3273	4.152580	GCAGAATTATTAGCTACGCCCTTC	59.847	45.833	0.00	0.00	0.00	3.46
2390	3279	6.216569	TCTGGAAGCAGAATTATTAGCTACG	58.783	40.000	0.00	0.00	36.07	3.51
2426	3315	6.350103	TCTATTCTTCTAGTCAGCTCTTCGA	58.650	40.000	0.00	0.00	0.00	3.71
2440	3329	6.731467	TGGTGCCCTTATTTTCTATTCTTCT	58.269	36.000	0.00	0.00	0.00	2.85
2441	3330	6.828785	TCTGGTGCCCTTATTTTCTATTCTTC	59.171	38.462	0.00	0.00	0.00	2.87
2447	3336	4.324254	CCAGTCTGGTGCCCTTATTTTCTA	60.324	45.833	11.09	0.00	31.35	2.10
2449	3338	2.755103	CCAGTCTGGTGCCCTTATTTTC	59.245	50.000	11.09	0.00	31.35	2.29
2465	3354	5.244785	TGTATGATTCTACGTGACCAGTC	57.755	43.478	0.00	0.00	0.00	3.51
2466	3355	5.127194	ACATGTATGATTCTACGTGACCAGT	59.873	40.000	16.00	0.00	39.82	4.00
2476	3365	7.445121	GTGATGGAGGAACATGTATGATTCTA	58.555	38.462	0.00	0.00	0.00	2.10
2479	3368	5.103982	TGGTGATGGAGGAACATGTATGATT	60.104	40.000	0.00	0.00	0.00	2.57
2488	3377	3.010472	ACATGAATGGTGATGGAGGAACA	59.990	43.478	0.00	0.00	0.00	3.18
2498	3387	1.552792	TGGCTCGTACATGAATGGTGA	59.447	47.619	0.00	0.00	0.00	4.02
2512	3401	3.189080	TGAAGTTGAACATTGATGGCTCG	59.811	43.478	0.00	0.00	0.00	5.03
2522	3411	1.780309	TGGGAGGGTGAAGTTGAACAT	59.220	47.619	0.00	0.00	0.00	2.71
2552	3443	4.742201	CTCCACACCTGGTCGCGG	62.742	72.222	6.13	0.00	38.90	6.46
2556	3447	2.048127	GTCGCTCCACACCTGGTC	60.048	66.667	0.00	0.00	38.90	4.02
2557	3448	3.626924	GGTCGCTCCACACCTGGT	61.627	66.667	0.00	0.00	38.90	4.00
2560	3451	3.314331	CCTGGTCGCTCCACACCT	61.314	66.667	0.00	0.00	41.93	4.00
2561	3452	3.626924	ACCTGGTCGCTCCACACC	61.627	66.667	0.00	0.00	41.93	4.16
2562	3453	2.357517	CACCTGGTCGCTCCACAC	60.358	66.667	0.00	0.00	41.93	3.82
2563	3454	2.842462	ACACCTGGTCGCTCCACA	60.842	61.111	0.00	0.00	41.93	4.17
2564	3455	2.357517	CACACCTGGTCGCTCCAC	60.358	66.667	0.00	0.00	41.93	4.02
2565	3456	3.625897	CCACACCTGGTCGCTCCA	61.626	66.667	0.00	0.00	45.01	3.86
2566	3457	2.391724	TTTCCACACCTGGTCGCTCC	62.392	60.000	0.00	0.00	38.90	4.70
2567	3458	0.534203	TTTTCCACACCTGGTCGCTC	60.534	55.000	0.00	0.00	38.90	5.03
2568	3459	0.818040	GTTTTCCACACCTGGTCGCT	60.818	55.000	0.00	0.00	38.90	4.93
2597	3488	5.470047	AAGGGAAATGGATAGCTACTACG	57.530	43.478	0.00	0.00	0.00	3.51
2598	3489	6.706716	GTGAAAGGGAAATGGATAGCTACTAC	59.293	42.308	0.00	0.00	0.00	2.73
2636	3527	0.467384	GCTGGAGATGCTCTAAGCCA	59.533	55.000	0.00	0.00	41.51	4.75
2721	3613	1.934459	TACTGGGAGCTAGGTCGCCT	61.934	60.000	29.34	19.33	37.71	5.52
2794	3689	1.804151	GTGGCGTCTATTTTGTGAGCA	59.196	47.619	0.00	0.00	0.00	4.26
2869	3795	2.885861	GACCTCGCCGTCTGATGT	59.114	61.111	0.00	0.00	0.00	3.06
3076	4059	0.034337	TCAAGGCGTGGTACTTGACC	59.966	55.000	0.00	0.00	45.76	4.02
3132	4116	0.550914	TGACCTGGCTTTCCTGTTGT	59.449	50.000	0.00	0.00	0.00	3.32
3135	4119	0.109342	CACTGACCTGGCTTTCCTGT	59.891	55.000	0.00	0.00	0.00	4.00
3325	4309	0.537371	CCAAGAAGGGGAAACACGCT	60.537	55.000	0.00	0.00	40.46	5.07
3486	4470	1.291877	CGCCGACCAAGAGTTCAAGG	61.292	60.000	0.00	0.00	0.00	3.61
3503	4487	0.958382	TTGTATCACCAGGGCAACGC	60.958	55.000	0.00	0.00	37.60	4.84
3515	4499	1.135431	GCGCATGTTTGCCTTGTATCA	60.135	47.619	0.30	0.00	46.57	2.15
3526	4510	2.646719	CAGCTGGTGCGCATGTTT	59.353	55.556	15.91	0.00	45.42	2.83
3587	4571	1.668151	GCCGAAGCGTGGAAAGTCT	60.668	57.895	0.00	0.00	0.00	3.24
3653	4898	4.658786	AGAAGGGGGCGTCCAGGT	62.659	66.667	9.07	0.00	37.22	4.00
3659	4904	0.036875	CAAGAAGAAGAAGGGGGCGT	59.963	55.000	0.00	0.00	0.00	5.68
3708	4965	2.053277	GGAGGACGTGGAGGAGGAC	61.053	68.421	0.00	0.00	0.00	3.85
3718	4975	1.928714	GAGGAGGAGGAGGAGGACGT	61.929	65.000	0.00	0.00	0.00	4.34
3720	4977	1.231928	GGAGGAGGAGGAGGAGGAC	59.768	68.421	0.00	0.00	0.00	3.85
3726	4983	0.106217	GTGAGGAGGAGGAGGAGGAG	60.106	65.000	0.00	0.00	0.00	3.69
3744	5016	2.467826	GCTCGGCTACGTCTACGGT	61.468	63.158	7.50	0.00	44.95	4.83
3745	5017	2.103581	GAGCTCGGCTACGTCTACGG	62.104	65.000	7.50	0.00	40.96	4.02
3903	5217	1.376553	GCCCTTCTCGCAAGCTTCT	60.377	57.895	0.00	0.00	37.18	2.85
3967	5282	1.435925	CATACACCTACTCGCCGCA	59.564	57.895	0.00	0.00	0.00	5.69
4337	5684	1.601419	CGAGTGGAGGGCGGAAGTTA	61.601	60.000	0.00	0.00	0.00	2.24
4359	5706	3.277133	CCACCGGGCATGACAAAG	58.723	61.111	6.32	0.00	0.00	2.77
4397	5744	1.449246	CAGCCGAAGCAGAGGAAGG	60.449	63.158	0.00	0.00	43.56	3.46
4510	5864	3.294214	CCATTTTCTCCATTCCTCCTGG	58.706	50.000	0.00	0.00	34.93	4.45
4512	5866	3.201363	TCCCATTTTCTCCATTCCTCCT	58.799	45.455	0.00	0.00	0.00	3.69
4549	5916	4.382320	CCCGCCGTTTCTTCCCGA	62.382	66.667	0.00	0.00	0.00	5.14
4752	6123	4.285790	AACAGGCCCTCCCCAGGA	62.286	66.667	0.00	0.00	43.65	3.86
4804	6178	3.558033	GCTACCTAGCTACTCCTCAGTT	58.442	50.000	0.00	0.00	45.62	3.16
4850	6672	6.687081	AAAAACCGTTGTATTCTCAGTTCA	57.313	33.333	0.00	0.00	0.00	3.18
4907	6730	1.002069	AACATCAGGCCCTCATTCCA	58.998	50.000	0.00	0.00	0.00	3.53
4910	6733	0.040058	TGCAACATCAGGCCCTCATT	59.960	50.000	0.00	0.00	0.00	2.57
4912	6735	0.918258	TATGCAACATCAGGCCCTCA	59.082	50.000	0.00	0.00	0.00	3.86
4915	6738	2.157738	GAGATATGCAACATCAGGCCC	58.842	52.381	0.00	0.00	0.00	5.80
4924	6747	6.974932	ACGGATATTCATGAGATATGCAAC	57.025	37.500	19.34	7.40	0.00	4.17
4930	6753	8.417273	TCTTACCAACGGATATTCATGAGATA	57.583	34.615	0.00	0.00	0.00	1.98
4931	6754	7.303182	TCTTACCAACGGATATTCATGAGAT	57.697	36.000	0.00	0.00	0.00	2.75
4939	6762	6.766467	GGATGTTCTTCTTACCAACGGATATT	59.234	38.462	0.00	0.00	0.00	1.28
4940	6763	6.289064	GGATGTTCTTCTTACCAACGGATAT	58.711	40.000	0.00	0.00	0.00	1.63
4947	6770	5.223449	ACTTCGGATGTTCTTCTTACCAA	57.777	39.130	0.00	0.00	0.00	3.67
4960	6783	6.073548	GCTAGGATATGAACAAACTTCGGATG	60.074	42.308	0.00	0.00	0.00	3.51
4979	6802	4.383118	GCTAGACTTCAATGGTTGCTAGGA	60.383	45.833	0.00	0.00	0.00	2.94
4993	6816	4.497340	CGGATCTCAGAGTTGCTAGACTTC	60.497	50.000	0.00	0.00	0.00	3.01
4996	6819	2.685897	ACGGATCTCAGAGTTGCTAGAC	59.314	50.000	0.00	0.00	0.00	2.59
5013	6836	2.151202	GGAGATGCAGTTTCAAACGGA	58.849	47.619	4.40	0.00	36.23	4.69
5016	6839	4.590850	AAAGGGAGATGCAGTTTCAAAC	57.409	40.909	0.00	0.00	0.00	2.93
5025	6848	9.120538	GTTAAATACTCATTAAAGGGAGATGCA	57.879	33.333	8.59	0.00	35.17	3.96
5026	6849	9.120538	TGTTAAATACTCATTAAAGGGAGATGC	57.879	33.333	8.59	0.00	35.17	3.91
5053	6876	9.012161	ACACCAACAAGTAAACTGTTAGTTTTA	57.988	29.630	11.66	0.00	45.38	1.52
5058	6881	5.008316	GGGACACCAACAAGTAAACTGTTAG	59.992	44.000	0.00	0.00	36.50	2.34
5059	6882	4.883006	GGGACACCAACAAGTAAACTGTTA	59.117	41.667	0.00	0.00	36.50	2.41
5060	6883	3.697542	GGGACACCAACAAGTAAACTGTT	59.302	43.478	0.00	0.00	36.50	3.16
5061	6884	3.284617	GGGACACCAACAAGTAAACTGT	58.715	45.455	0.00	0.00	36.50	3.55
5062	6885	3.283751	TGGGACACCAACAAGTAAACTG	58.716	45.455	0.00	0.00	45.87	3.16
5088	6913	4.336993	TGCTGACGTTTTCAAAATGGTAGT	59.663	37.500	7.02	0.00	32.21	2.73
5135	6960	3.081061	TCAAATAGTGCCTTGCAACGAT	58.919	40.909	0.00	0.00	41.47	3.73
5152	6977	6.548441	AAATCGTCTAAAACGGTCATCAAA	57.452	33.333	0.00	0.00	46.16	2.69
5181	7015	0.035820	GGTCCCGCCTGTCATAAACA	60.036	55.000	0.00	0.00	36.18	2.83
5207	7041	2.439701	CTGCCACATCAGCCCTGG	60.440	66.667	0.00	0.00	0.00	4.45
5211	7045	0.610232	ACTTTCCTGCCACATCAGCC	60.610	55.000	0.00	0.00	32.87	4.85
5217	7051	0.948678	GCGTTAACTTTCCTGCCACA	59.051	50.000	3.71	0.00	0.00	4.17
5218	7052	0.240145	GGCGTTAACTTTCCTGCCAC	59.760	55.000	13.18	0.00	42.03	5.01
5231	7065	2.831333	TGGTCAAACTAAACGGCGTTA	58.169	42.857	27.05	13.02	0.00	3.18
5270	7104	2.609610	GACCTGTGGCCCCACCTA	60.610	66.667	14.47	0.00	45.63	3.08
5284	7119	2.235898	AGAGAGAAGGTTGATGCTGACC	59.764	50.000	0.00	0.00	36.15	4.02
5294	7129	0.043485	GGAGGGGGAGAGAGAAGGTT	59.957	60.000	0.00	0.00	0.00	3.50
5302	7137	3.742248	GACGGAGGGAGGGGGAGAG	62.742	73.684	0.00	0.00	0.00	3.20
5303	7138	3.752167	GACGGAGGGAGGGGGAGA	61.752	72.222	0.00	0.00	0.00	3.71
5308	7143	4.862823	GGGGAGACGGAGGGAGGG	62.863	77.778	0.00	0.00	0.00	4.30
5326	7161	3.713764	AGAGAGAGAGAGAGAGAGAAGGG	59.286	52.174	0.00	0.00	0.00	3.95
5361	7248	5.183331	GGGAAGGAGAGTTTGTTGAATTACC	59.817	44.000	0.00	0.00	0.00	2.85
5362	7249	5.183331	GGGGAAGGAGAGTTTGTTGAATTAC	59.817	44.000	0.00	0.00	0.00	1.89
5363	7250	5.074515	AGGGGAAGGAGAGTTTGTTGAATTA	59.925	40.000	0.00	0.00	0.00	1.40
5364	7251	4.140924	AGGGGAAGGAGAGTTTGTTGAATT	60.141	41.667	0.00	0.00	0.00	2.17
5365	7252	3.399305	AGGGGAAGGAGAGTTTGTTGAAT	59.601	43.478	0.00	0.00	0.00	2.57
5367	7254	2.418669	AGGGGAAGGAGAGTTTGTTGA	58.581	47.619	0.00	0.00	0.00	3.18
5368	7255	2.959465	AGGGGAAGGAGAGTTTGTTG	57.041	50.000	0.00	0.00	0.00	3.33
5369	7256	3.973472	AAAGGGGAAGGAGAGTTTGTT	57.027	42.857	0.00	0.00	0.00	2.83
5370	7257	5.325239	CATTAAAGGGGAAGGAGAGTTTGT	58.675	41.667	0.00	0.00	0.00	2.83
5372	7259	4.606255	TCCATTAAAGGGGAAGGAGAGTTT	59.394	41.667	0.00	0.00	0.00	2.66
5373	7260	4.183916	TCCATTAAAGGGGAAGGAGAGTT	58.816	43.478	0.00	0.00	0.00	3.01
5374	7261	3.815507	TCCATTAAAGGGGAAGGAGAGT	58.184	45.455	0.00	0.00	0.00	3.24
5377	7264	5.518865	TGAAATCCATTAAAGGGGAAGGAG	58.481	41.667	0.00	0.00	36.62	3.69
5379	7266	4.651045	CCTGAAATCCATTAAAGGGGAAGG	59.349	45.833	0.00	0.00	36.62	3.46
5380	7267	4.100035	GCCTGAAATCCATTAAAGGGGAAG	59.900	45.833	0.00	0.00	36.62	3.46
5381	7268	4.030216	GCCTGAAATCCATTAAAGGGGAA	58.970	43.478	0.00	0.00	36.62	3.97
5390	7291	1.077663	ACTGGTGGCCTGAAATCCATT	59.922	47.619	3.32	0.00	34.47	3.16
5392	7293	1.281867	CTACTGGTGGCCTGAAATCCA	59.718	52.381	3.32	2.41	0.00	3.41
5397	7298	4.660521	ACCTACTGGTGGCCTGAA	57.339	55.556	3.32	0.00	46.51	3.02
5407	7308	1.134560	GGGTAGCACGAGAACCTACTG	59.865	57.143	0.00	0.00	33.65	2.74
5463	7419	4.744237	AGGTAATCCATCATCCATTTGGG	58.256	43.478	0.00	0.00	35.89	4.12
5493	7449	2.440409	GCATCCACTTGAGGACACATT	58.560	47.619	0.00	0.00	41.30	2.71
5494	7450	1.676916	CGCATCCACTTGAGGACACAT	60.677	52.381	0.00	0.00	41.30	3.21
5540	7496	6.869913	CACACCCGACTATACTTTAGTTGAAA	59.130	38.462	2.26	0.00	32.05	2.69
5546	7502	4.650754	AGCACACCCGACTATACTTTAG	57.349	45.455	0.00	0.00	0.00	1.85
5551	7507	4.317671	AATGTAGCACACCCGACTATAC	57.682	45.455	0.00	0.00	0.00	1.47
5591	7548	6.827251	TCCTGTCTATTCTAACTCGAGCTAAA	59.173	38.462	13.61	2.36	0.00	1.85
5636	7593	6.861065	ATGGTAACTAACAGAACAACACTG	57.139	37.500	0.00	0.00	38.28	3.66
5697	7654	3.919216	ACTCCAAATGTTCTGAGAGACG	58.081	45.455	0.00	0.00	0.00	4.18
5775	7935	9.084533	ACAAAACACACCAACCAATACTATTAT	57.915	29.630	0.00	0.00	0.00	1.28
5778	7938	6.547880	TGACAAAACACACCAACCAATACTAT	59.452	34.615	0.00	0.00	0.00	2.12
5792	7965	2.710377	AGTGACAGCTGACAAAACACA	58.290	42.857	23.35	4.37	0.00	3.72
5803	7976	3.743521	TGCAACTTGAATAGTGACAGCT	58.256	40.909	0.00	0.00	37.12	4.24
5817	7990	6.899393	TTTAGACAATGAAGGATGCAACTT	57.101	33.333	6.72	6.72	0.00	2.66
5861	8035	2.036387	TGCTTAGGGCGCTTAGTCATA	58.964	47.619	16.82	1.08	45.43	2.15
5867	8041	0.532862	GCTCATGCTTAGGGCGCTTA	60.533	55.000	9.23	0.00	45.43	3.09
5877	8051	4.510038	AACGAAGAAAATGCTCATGCTT	57.490	36.364	0.00	0.00	40.48	3.91
5890	8064	5.302360	ACTGCCATACAACTTAACGAAGAA	58.698	37.500	0.00	0.00	36.45	2.52
5945	8119	9.421806	TGGCAAATGTTTTTAAGATATCAACTG	57.578	29.630	5.32	0.00	0.00	3.16
6005	8179	5.993748	TCCCAATACCTTTTAGCCTTTTG	57.006	39.130	0.00	0.00	0.00	2.44
6019	8198	8.257306	ACCACATTGATGTTTATTTCCCAATAC	58.743	33.333	0.00	0.00	39.39	1.89
6039	8218	6.158695	AGGAAAGATATCTGGTAACACCACAT	59.841	38.462	5.86	0.00	44.79	3.21
6058	8237	8.818057	CAACTCCAATCTTTATACGTAGGAAAG	58.182	37.037	19.54	19.54	0.00	2.62
6060	8239	7.093201	ACCAACTCCAATCTTTATACGTAGGAA	60.093	37.037	0.08	0.00	0.00	3.36
6062	8241	6.479001	CACCAACTCCAATCTTTATACGTAGG	59.521	42.308	0.08	0.00	0.00	3.18
6063	8242	6.479001	CCACCAACTCCAATCTTTATACGTAG	59.521	42.308	0.08	0.00	0.00	3.51
6064	8243	6.070653	ACCACCAACTCCAATCTTTATACGTA	60.071	38.462	0.00	0.00	0.00	3.57
6065	8244	5.183228	CCACCAACTCCAATCTTTATACGT	58.817	41.667	0.00	0.00	0.00	3.57
6066	8245	5.064707	CACCACCAACTCCAATCTTTATACG	59.935	44.000	0.00	0.00	0.00	3.06
6067	8246	6.177610	TCACCACCAACTCCAATCTTTATAC	58.822	40.000	0.00	0.00	0.00	1.47
6068	8247	6.012858	ACTCACCACCAACTCCAATCTTTATA	60.013	38.462	0.00	0.00	0.00	0.98
6069	8248	5.222130	ACTCACCACCAACTCCAATCTTTAT	60.222	40.000	0.00	0.00	0.00	1.40
6070	8249	4.104102	ACTCACCACCAACTCCAATCTTTA	59.896	41.667	0.00	0.00	0.00	1.85
6071	8250	3.117512	ACTCACCACCAACTCCAATCTTT	60.118	43.478	0.00	0.00	0.00	2.52
6072	8251	2.443255	ACTCACCACCAACTCCAATCTT	59.557	45.455	0.00	0.00	0.00	2.40
6074	8253	2.427506	GACTCACCACCAACTCCAATC	58.572	52.381	0.00	0.00	0.00	2.67
6075	8254	1.073923	GGACTCACCACCAACTCCAAT	59.926	52.381	0.00	0.00	38.79	3.16
6076	8255	0.472471	GGACTCACCACCAACTCCAA	59.528	55.000	0.00	0.00	38.79	3.53
6077	8256	0.692756	TGGACTCACCACCAACTCCA	60.693	55.000	0.00	0.00	44.64	3.86
6078	8257	2.142220	TGGACTCACCACCAACTCC	58.858	57.895	0.00	0.00	44.64	3.85
6094	8273	2.175499	AGGATGTTGGACCCATATGTGG	59.825	50.000	0.51	0.51	45.61	4.17
6095	8274	3.582998	AGGATGTTGGACCCATATGTG	57.417	47.619	1.24	0.00	0.00	3.21
6096	8275	4.608170	AAAGGATGTTGGACCCATATGT	57.392	40.909	1.24	0.00	0.00	2.29
6097	8276	4.955450	TGAAAAGGATGTTGGACCCATATG	59.045	41.667	0.00	0.00	0.00	1.78
6098	8277	5.205517	TGAAAAGGATGTTGGACCCATAT	57.794	39.130	0.00	0.00	0.00	1.78
6099	8278	4.666412	TGAAAAGGATGTTGGACCCATA	57.334	40.909	0.00	0.00	0.00	2.74
6100	8279	3.541242	TGAAAAGGATGTTGGACCCAT	57.459	42.857	0.00	0.00	0.00	4.00
6101	8280	3.320610	TTGAAAAGGATGTTGGACCCA	57.679	42.857	0.00	0.00	0.00	4.51
6102	8281	4.890158	ATTTGAAAAGGATGTTGGACCC	57.110	40.909	0.00	0.00	0.00	4.46
6103	8282	9.936759	TTATTTATTTGAAAAGGATGTTGGACC	57.063	29.630	0.00	0.00	0.00	4.46
6129	8308	9.238368	CCATATTTGGGGATACGTGTATTTATT	57.762	33.333	0.00	0.00	39.56	1.40
6130	8309	8.607713	TCCATATTTGGGGATACGTGTATTTAT	58.392	33.333	0.00	0.00	43.81	1.40
6131	8310	7.975608	TCCATATTTGGGGATACGTGTATTTA	58.024	34.615	0.00	0.00	43.81	1.40
6132	8311	6.843752	TCCATATTTGGGGATACGTGTATTT	58.156	36.000	0.00	0.00	43.81	1.40
6133	8312	6.442541	TCCATATTTGGGGATACGTGTATT	57.557	37.500	0.00	0.00	43.81	1.89
6134	8313	6.442541	TTCCATATTTGGGGATACGTGTAT	57.557	37.500	0.00	0.00	43.81	2.29
6135	8314	5.890752	TTCCATATTTGGGGATACGTGTA	57.109	39.130	0.00	0.00	43.81	2.90
6136	8315	4.781775	TTCCATATTTGGGGATACGTGT	57.218	40.909	0.00	0.00	43.81	4.49
6137	8316	6.128007	GCTAATTCCATATTTGGGGATACGTG	60.128	42.308	0.00	0.00	43.81	4.49
6138	8317	5.944007	GCTAATTCCATATTTGGGGATACGT	59.056	40.000	2.06	0.00	43.81	3.57
6139	8318	5.943416	TGCTAATTCCATATTTGGGGATACG	59.057	40.000	2.06	0.00	43.81	3.06
6140	8319	7.309805	GGTTGCTAATTCCATATTTGGGGATAC	60.310	40.741	2.06	0.00	43.81	2.24
6141	8320	6.723977	GGTTGCTAATTCCATATTTGGGGATA	59.276	38.462	2.06	0.00	43.81	2.59
6142	8321	5.543790	GGTTGCTAATTCCATATTTGGGGAT	59.456	40.000	2.06	0.00	43.81	3.85
6143	8322	4.898861	GGTTGCTAATTCCATATTTGGGGA	59.101	41.667	2.06	0.00	43.81	4.81
6144	8323	4.901250	AGGTTGCTAATTCCATATTTGGGG	59.099	41.667	2.06	0.00	43.81	4.96
6145	8324	6.462909	GGAAGGTTGCTAATTCCATATTTGGG	60.463	42.308	2.06	0.00	43.81	4.12
6146	8325	6.098124	TGGAAGGTTGCTAATTCCATATTTGG	59.902	38.462	10.67	0.00	45.76	3.28
6147	8326	7.111247	TGGAAGGTTGCTAATTCCATATTTG	57.889	36.000	10.67	0.00	45.76	2.32
6154	8333	3.696548	CCTCTTGGAAGGTTGCTAATTCC	59.303	47.826	6.49	6.49	42.38	3.01
6155	8334	3.129462	GCCTCTTGGAAGGTTGCTAATTC	59.871	47.826	0.00	0.00	38.79	2.17
6156	8335	3.092301	GCCTCTTGGAAGGTTGCTAATT	58.908	45.455	0.00	0.00	38.79	1.40
6157	8336	2.041620	TGCCTCTTGGAAGGTTGCTAAT	59.958	45.455	0.00	0.00	38.79	1.73
6158	8337	1.423541	TGCCTCTTGGAAGGTTGCTAA	59.576	47.619	0.00	0.00	38.79	3.09
6159	8338	1.064003	TGCCTCTTGGAAGGTTGCTA	58.936	50.000	0.00	0.00	38.79	3.49
6160	8339	0.407139	ATGCCTCTTGGAAGGTTGCT	59.593	50.000	0.00	0.00	38.79	3.91
6161	8340	2.128771	TATGCCTCTTGGAAGGTTGC	57.871	50.000	0.00	0.00	38.79	4.17
6162	8341	5.652014	TGTTTATATGCCTCTTGGAAGGTTG	59.348	40.000	0.00	0.00	38.79	3.77
6163	8342	5.826643	TGTTTATATGCCTCTTGGAAGGTT	58.173	37.500	0.00	0.00	38.79	3.50
6164	8343	5.450818	TGTTTATATGCCTCTTGGAAGGT	57.549	39.130	0.00	0.00	38.79	3.50
6165	8344	6.773976	TTTGTTTATATGCCTCTTGGAAGG	57.226	37.500	0.00	0.00	39.62	3.46
6166	8345	7.775120	ACATTTGTTTATATGCCTCTTGGAAG	58.225	34.615	0.00	0.00	34.57	3.46
6167	8346	7.716799	ACATTTGTTTATATGCCTCTTGGAA	57.283	32.000	0.00	0.00	34.57	3.53
6168	8347	8.052748	AGTACATTTGTTTATATGCCTCTTGGA	58.947	33.333	0.00	0.00	34.57	3.53
6169	8348	8.225603	AGTACATTTGTTTATATGCCTCTTGG	57.774	34.615	0.00	0.00	0.00	3.61
6185	8364	9.530633	GGAGGTAGTATGAGTAAAGTACATTTG	57.469	37.037	0.00	0.00	32.01	2.32
6186	8365	9.263446	TGGAGGTAGTATGAGTAAAGTACATTT	57.737	33.333	0.00	0.00	34.72	2.32
6187	8366	8.834004	TGGAGGTAGTATGAGTAAAGTACATT	57.166	34.615	0.00	0.00	0.00	2.71
6188	8367	9.435570	AATGGAGGTAGTATGAGTAAAGTACAT	57.564	33.333	0.00	0.00	0.00	2.29
6189	8368	8.834004	AATGGAGGTAGTATGAGTAAAGTACA	57.166	34.615	0.00	0.00	0.00	2.90
6190	8369	8.074972	CGAATGGAGGTAGTATGAGTAAAGTAC	58.925	40.741	0.00	0.00	0.00	2.73
6191	8370	7.230108	CCGAATGGAGGTAGTATGAGTAAAGTA	59.770	40.741	0.00	0.00	37.49	2.24
6192	8371	6.040616	CCGAATGGAGGTAGTATGAGTAAAGT	59.959	42.308	0.00	0.00	37.49	2.66
6193	8372	6.448006	CCGAATGGAGGTAGTATGAGTAAAG	58.552	44.000	0.00	0.00	37.49	1.85
6194	8373	5.303589	CCCGAATGGAGGTAGTATGAGTAAA	59.696	44.000	0.00	0.00	37.49	2.01
6195	8374	4.831155	CCCGAATGGAGGTAGTATGAGTAA	59.169	45.833	0.00	0.00	37.49	2.24
6196	8375	4.141088	ACCCGAATGGAGGTAGTATGAGTA	60.141	45.833	0.00	0.00	37.49	2.59
6197	8376	3.231818	CCCGAATGGAGGTAGTATGAGT	58.768	50.000	0.00	0.00	37.49	3.41
6198	8377	3.231818	ACCCGAATGGAGGTAGTATGAG	58.768	50.000	0.00	0.00	37.49	2.90
6199	8378	3.323774	ACCCGAATGGAGGTAGTATGA	57.676	47.619	0.00	0.00	37.49	2.15
6200	8379	4.417426	AAACCCGAATGGAGGTAGTATG	57.583	45.455	0.00	0.00	37.49	2.39
6206	8385	4.141551	GGACTAATAAACCCGAATGGAGGT	60.142	45.833	0.00	0.00	37.49	3.85
6216	8395	7.870509	AAATACGAAAGGGACTAATAAACCC	57.129	36.000	0.00	0.00	38.49	4.11
6217	8396	8.733458	ACAAAATACGAAAGGGACTAATAAACC	58.267	33.333	0.00	0.00	38.49	3.27
6218	8397	9.550811	CACAAAATACGAAAGGGACTAATAAAC	57.449	33.333	0.00	0.00	38.49	2.01
6219	8398	8.238631	GCACAAAATACGAAAGGGACTAATAAA	58.761	33.333	0.00	0.00	38.49	1.40
6220	8399	7.148205	GGCACAAAATACGAAAGGGACTAATAA	60.148	37.037	0.00	0.00	38.49	1.40
6224	8403	4.004982	GGCACAAAATACGAAAGGGACTA	58.995	43.478	0.00	0.00	38.49	2.59
6229	8408	3.005367	AGTTGGGCACAAAATACGAAAGG	59.995	43.478	1.02	0.00	38.54	3.11
6230	8409	4.237349	AGTTGGGCACAAAATACGAAAG	57.763	40.909	1.02	0.00	38.54	2.62
6234	8413	3.733727	GTCAAAGTTGGGCACAAAATACG	59.266	43.478	1.02	0.00	38.54	3.06
6236	8415	3.243569	CGGTCAAAGTTGGGCACAAAATA	60.244	43.478	1.02	0.00	38.54	1.40
6237	8416	2.482839	CGGTCAAAGTTGGGCACAAAAT	60.483	45.455	1.02	0.00	38.54	1.82
6238	8417	1.134965	CGGTCAAAGTTGGGCACAAAA	60.135	47.619	1.02	0.00	38.54	2.44
6241	8420	2.485795	GCGGTCAAAGTTGGGCACA	61.486	57.895	0.00	0.00	0.00	4.57
6242	8421	2.335011	GCGGTCAAAGTTGGGCAC	59.665	61.111	0.00	0.00	0.00	5.01
6243	8422	2.124109	TGCGGTCAAAGTTGGGCA	60.124	55.556	0.00	2.62	0.00	5.36
6244	8423	2.644992	CTGCGGTCAAAGTTGGGC	59.355	61.111	0.00	0.00	0.00	5.36
6245	8424	1.106944	AACCTGCGGTCAAAGTTGGG	61.107	55.000	0.69	0.00	33.12	4.12
6246	8425	0.744281	AAACCTGCGGTCAAAGTTGG	59.256	50.000	0.69	0.00	33.12	3.77
6248	8427	0.102300	GCAAACCTGCGGTCAAAGTT	59.898	50.000	0.69	0.00	39.20	2.66
6249	8428	1.733526	GCAAACCTGCGGTCAAAGT	59.266	52.632	0.69	0.00	39.20	2.66
6250	8429	4.633980	GCAAACCTGCGGTCAAAG	57.366	55.556	0.69	0.00	39.20	2.77
6259	8438	9.132521	CAACTTCTATTTCATTAAGCAAACCTG	57.867	33.333	0.00	0.00	0.00	4.00
6260	8439	8.860088	ACAACTTCTATTTCATTAAGCAAACCT	58.140	29.630	0.00	0.00	0.00	3.50
6284	8463	7.971168	CCAACAACTTAAGTTTTGTGACATACA	59.029	33.333	25.03	0.00	36.08	2.29
6285	8464	8.185505	TCCAACAACTTAAGTTTTGTGACATAC	58.814	33.333	25.03	0.00	36.08	2.39
6286	8465	8.282455	TCCAACAACTTAAGTTTTGTGACATA	57.718	30.769	25.03	8.52	36.08	2.29
6288	8467	6.576662	TCCAACAACTTAAGTTTTGTGACA	57.423	33.333	25.03	12.14	36.08	3.58
6289	8468	7.757624	TGAATCCAACAACTTAAGTTTTGTGAC	59.242	33.333	25.03	18.37	36.08	3.67
6291	8470	8.647143	ATGAATCCAACAACTTAAGTTTTGTG	57.353	30.769	25.03	19.61	36.08	3.33
6302	8481	8.526147	CCTCTTTCAAATATGAATCCAACAACT	58.474	33.333	0.00	0.00	44.70	3.16
6303	8482	8.306761	ACCTCTTTCAAATATGAATCCAACAAC	58.693	33.333	0.00	0.00	44.70	3.32
6305	8484	8.421249	AACCTCTTTCAAATATGAATCCAACA	57.579	30.769	0.00	0.00	44.70	3.33
6306	8485	9.710900	AAAACCTCTTTCAAATATGAATCCAAC	57.289	29.630	0.00	0.00	44.70	3.77
6307	8486	9.927668	GAAAACCTCTTTCAAATATGAATCCAA	57.072	29.630	0.00	0.00	44.70	3.53
6309	8488	9.927668	TTGAAAACCTCTTTCAAATATGAATCC	57.072	29.630	9.58	0.00	44.70	3.01
6385	8640	6.459024	CCCACGTATTTTGAGTCAAACTTTGA	60.459	38.462	17.85	3.63	32.79	2.69
6386	8641	5.685511	CCCACGTATTTTGAGTCAAACTTTG	59.314	40.000	17.85	10.82	32.79	2.77
6387	8642	5.221165	CCCCACGTATTTTGAGTCAAACTTT	60.221	40.000	17.85	8.62	32.79	2.66
6388	8643	4.277423	CCCCACGTATTTTGAGTCAAACTT	59.723	41.667	17.85	10.95	32.79	2.66
6389	8644	3.818773	CCCCACGTATTTTGAGTCAAACT	59.181	43.478	17.85	14.91	32.79	2.66
6390	8645	3.057806	CCCCCACGTATTTTGAGTCAAAC	60.058	47.826	17.85	6.94	32.79	2.93
6391	8646	3.150767	CCCCCACGTATTTTGAGTCAAA	58.849	45.455	14.35	14.35	0.00	2.69
6392	8647	2.785562	CCCCCACGTATTTTGAGTCAA	58.214	47.619	0.08	0.08	0.00	3.18
6393	8648	2.483014	CCCCCACGTATTTTGAGTCA	57.517	50.000	0.00	0.00	0.00	3.41
6410	8665	1.476291	CCGTCCTGGTTTATTAGCCCC	60.476	57.143	0.00	0.00	0.00	5.80
6411	8666	1.487558	TCCGTCCTGGTTTATTAGCCC	59.512	52.381	0.00	0.00	39.52	5.19
6412	8667	2.484947	CCTCCGTCCTGGTTTATTAGCC	60.485	54.545	0.00	0.00	39.52	3.93
6413	8668	2.169978	ACCTCCGTCCTGGTTTATTAGC	59.830	50.000	0.00	0.00	39.52	3.09
6414	8669	4.648307	ACTACCTCCGTCCTGGTTTATTAG	59.352	45.833	0.00	0.00	39.52	1.73
6415	8670	4.613437	ACTACCTCCGTCCTGGTTTATTA	58.387	43.478	0.00	0.00	39.52	0.98
6420	8675	2.292061	ACATACTACCTCCGTCCTGGTT	60.292	50.000	0.00	0.00	39.52	3.67
6422	8677	1.681793	CACATACTACCTCCGTCCTGG	59.318	57.143	0.00	0.00	40.09	4.45
6424	8679	2.025605	TGTCACATACTACCTCCGTCCT	60.026	50.000	0.00	0.00	0.00	3.85
6461	8757	9.477484	GGGTCTCACATAAAAGTAGTGTATATG	57.523	37.037	0.00	0.00	34.94	1.78
6503	8869	9.206870	CACATTTTATCTTTGTTATTTGTGCCT	57.793	29.630	0.00	0.00	0.00	4.75
6504	8870	9.202273	TCACATTTTATCTTTGTTATTTGTGCC	57.798	29.630	0.00	0.00	32.81	5.01
6522	8888	9.965824	ATCGATTTTTAGTTGAAGTCACATTTT	57.034	25.926	0.00	0.00	0.00	1.82
6523	8889	9.612620	GATCGATTTTTAGTTGAAGTCACATTT	57.387	29.630	0.00	0.00	0.00	2.32
6524	8890	9.003658	AGATCGATTTTTAGTTGAAGTCACATT	57.996	29.630	0.00	0.00	0.00	2.71
6525	8891	8.553459	AGATCGATTTTTAGTTGAAGTCACAT	57.447	30.769	0.00	0.00	0.00	3.21
6526	8892	7.962964	AGATCGATTTTTAGTTGAAGTCACA	57.037	32.000	0.00	0.00	0.00	3.58
6527	8893	7.746475	CCAAGATCGATTTTTAGTTGAAGTCAC	59.254	37.037	0.00	0.00	0.00	3.67
6528	8894	7.444183	ACCAAGATCGATTTTTAGTTGAAGTCA	59.556	33.333	0.00	0.00	0.00	3.41
6529	8895	7.807680	ACCAAGATCGATTTTTAGTTGAAGTC	58.192	34.615	0.00	0.00	0.00	3.01
6531	8897	9.463443	AAAACCAAGATCGATTTTTAGTTGAAG	57.537	29.630	12.14	0.00	0.00	3.02
6546	8912	6.653989	TGGGAAGAGATCTAAAACCAAGATC	58.346	40.000	0.00	5.18	46.48	2.75
6547	8913	6.642733	TGGGAAGAGATCTAAAACCAAGAT	57.357	37.500	0.00	0.00	36.40	2.40
6549	8915	7.115414	AGATTGGGAAGAGATCTAAAACCAAG	58.885	38.462	19.71	0.00	39.76	3.61
6550	8916	7.032598	AGATTGGGAAGAGATCTAAAACCAA	57.967	36.000	18.21	18.21	40.57	3.67
6551	8917	6.642733	AGATTGGGAAGAGATCTAAAACCA	57.357	37.500	0.00	0.00	0.00	3.67
6552	8918	7.797062	AGTAGATTGGGAAGAGATCTAAAACC	58.203	38.462	0.00	0.00	35.00	3.27
6559	8925	8.871629	TGACTATAGTAGATTGGGAAGAGATC	57.128	38.462	5.09	0.00	0.00	2.75
6560	8926	9.836179	AATGACTATAGTAGATTGGGAAGAGAT	57.164	33.333	5.09	0.00	0.00	2.75
6580	8946	7.094805	TGCAGCGTTAGAGAATTTTAAATGACT	60.095	33.333	0.00	0.00	0.00	3.41
6581	8947	7.021196	TGCAGCGTTAGAGAATTTTAAATGAC	58.979	34.615	0.00	0.00	0.00	3.06
6583	8949	7.975866	ATGCAGCGTTAGAGAATTTTAAATG	57.024	32.000	0.00	0.00	0.00	2.32
6585	8951	9.109393	AGATATGCAGCGTTAGAGAATTTTAAA	57.891	29.630	0.00	0.00	0.00	1.52
6587	8953	8.144478	AGAGATATGCAGCGTTAGAGAATTTTA	58.856	33.333	0.00	0.00	0.00	1.52
6588	8954	6.989169	AGAGATATGCAGCGTTAGAGAATTTT	59.011	34.615	0.00	0.00	0.00	1.82
6589	8955	6.520272	AGAGATATGCAGCGTTAGAGAATTT	58.480	36.000	0.00	0.00	0.00	1.82
6590	8956	6.095432	AGAGATATGCAGCGTTAGAGAATT	57.905	37.500	0.00	0.00	0.00	2.17
6592	8958	4.580580	TGAGAGATATGCAGCGTTAGAGAA	59.419	41.667	0.00	0.00	0.00	2.87
6593	8959	4.023622	GTGAGAGATATGCAGCGTTAGAGA	60.024	45.833	0.00	0.00	0.00	3.10
6594	8960	4.225984	GTGAGAGATATGCAGCGTTAGAG	58.774	47.826	0.00	0.00	0.00	2.43
6597	8963	2.287608	CGGTGAGAGATATGCAGCGTTA	60.288	50.000	0.00	0.00	45.24	3.18
6598	8964	1.536922	CGGTGAGAGATATGCAGCGTT	60.537	52.381	0.00	0.00	45.24	4.84
6599	8965	0.031314	CGGTGAGAGATATGCAGCGT	59.969	55.000	0.00	0.00	45.24	5.07
6600	8966	2.806577	CGGTGAGAGATATGCAGCG	58.193	57.895	0.00	0.00	45.07	5.18
6601	8967	3.584406	ATACGGTGAGAGATATGCAGC	57.416	47.619	0.00	0.00	0.00	5.25
6602	8968	6.653183	CAAAAATACGGTGAGAGATATGCAG	58.347	40.000	0.00	0.00	0.00	4.41
6603	8969	5.007626	GCAAAAATACGGTGAGAGATATGCA	59.992	40.000	0.00	0.00	0.00	3.96
6604	8970	5.237344	AGCAAAAATACGGTGAGAGATATGC	59.763	40.000	0.00	0.00	0.00	3.14
6605	8971	6.851222	AGCAAAAATACGGTGAGAGATATG	57.149	37.500	0.00	0.00	0.00	1.78
6606	8972	8.958119	TTTAGCAAAAATACGGTGAGAGATAT	57.042	30.769	0.00	0.00	0.00	1.63
6608	8974	7.865706	ATTTAGCAAAAATACGGTGAGAGAT	57.134	32.000	0.00	0.00	0.00	2.75
6609	8975	7.681939	AATTTAGCAAAAATACGGTGAGAGA	57.318	32.000	0.00	0.00	0.00	3.10
6610	8976	8.742554	AAAATTTAGCAAAAATACGGTGAGAG	57.257	30.769	0.00	0.00	0.00	3.20
6611	8977	8.573035	AGAAAATTTAGCAAAAATACGGTGAGA	58.427	29.630	0.00	0.00	0.00	3.27
6612	8978	8.742554	AGAAAATTTAGCAAAAATACGGTGAG	57.257	30.769	0.00	0.00	0.00	3.51
6630	8996	9.325150	CGTTGTGTGATTTACGATTAGAAAATT	57.675	29.630	0.00	0.00	36.16	1.82
6631	8997	7.960738	CCGTTGTGTGATTTACGATTAGAAAAT	59.039	33.333	0.00	0.00	36.16	1.82
6633	8999	6.424509	ACCGTTGTGTGATTTACGATTAGAAA	59.575	34.615	0.00	0.00	36.16	2.52
6635	9001	5.472148	ACCGTTGTGTGATTTACGATTAGA	58.528	37.500	0.00	0.00	36.16	2.10
6636	9002	5.346551	TGACCGTTGTGTGATTTACGATTAG	59.653	40.000	0.00	0.00	36.16	1.73
6637	9003	5.228665	TGACCGTTGTGTGATTTACGATTA	58.771	37.500	0.00	0.00	36.16	1.75
6638	9004	4.059511	TGACCGTTGTGTGATTTACGATT	58.940	39.130	0.00	0.00	36.16	3.34
6639	9005	3.655486	TGACCGTTGTGTGATTTACGAT	58.345	40.909	0.00	0.00	36.16	3.73
6641	9007	5.518529	TTATGACCGTTGTGTGATTTACG	57.481	39.130	0.00	0.00	0.00	3.18
6642	9008	7.124347	TCTTTATGACCGTTGTGTGATTTAC	57.876	36.000	0.00	0.00	0.00	2.01
6643	9009	7.226918	TGTTCTTTATGACCGTTGTGTGATTTA	59.773	33.333	0.00	0.00	0.00	1.40
6644	9010	6.038825	TGTTCTTTATGACCGTTGTGTGATTT	59.961	34.615	0.00	0.00	0.00	2.17
6646	9012	5.049680	GTGTTCTTTATGACCGTTGTGTGAT	60.050	40.000	0.00	0.00	0.00	3.06
6647	9013	4.271533	GTGTTCTTTATGACCGTTGTGTGA	59.728	41.667	0.00	0.00	0.00	3.58
6648	9014	4.272504	AGTGTTCTTTATGACCGTTGTGTG	59.727	41.667	0.00	0.00	0.00	3.82
6649	9015	4.448210	AGTGTTCTTTATGACCGTTGTGT	58.552	39.130	0.00	0.00	0.00	3.72
6651	9017	6.050432	TGTTAGTGTTCTTTATGACCGTTGT	58.950	36.000	0.00	0.00	0.00	3.32
6652	9018	6.533819	TGTTAGTGTTCTTTATGACCGTTG	57.466	37.500	0.00	0.00	0.00	4.10
6653	9019	7.739498	AATGTTAGTGTTCTTTATGACCGTT	57.261	32.000	0.00	0.00	0.00	4.44
6654	9020	9.444600	AATAATGTTAGTGTTCTTTATGACCGT	57.555	29.630	0.00	0.00	0.00	4.83
6662	9028	8.357402	GGTGGTGAAATAATGTTAGTGTTCTTT	58.643	33.333	0.00	0.00	0.00	2.52
6663	9029	7.724061	AGGTGGTGAAATAATGTTAGTGTTCTT	59.276	33.333	0.00	0.00	0.00	2.52
6664	9030	7.231467	AGGTGGTGAAATAATGTTAGTGTTCT	58.769	34.615	0.00	0.00	0.00	3.01
6665	9031	7.361799	GGAGGTGGTGAAATAATGTTAGTGTTC	60.362	40.741	0.00	0.00	0.00	3.18
6666	9032	6.433093	GGAGGTGGTGAAATAATGTTAGTGTT	59.567	38.462	0.00	0.00	0.00	3.32
6667	9033	5.944007	GGAGGTGGTGAAATAATGTTAGTGT	59.056	40.000	0.00	0.00	0.00	3.55
6668	9034	5.943416	TGGAGGTGGTGAAATAATGTTAGTG	59.057	40.000	0.00	0.00	0.00	2.74
6669	9035	6.134535	TGGAGGTGGTGAAATAATGTTAGT	57.865	37.500	0.00	0.00	0.00	2.24
6670	9036	6.404734	GCTTGGAGGTGGTGAAATAATGTTAG	60.405	42.308	0.00	0.00	0.00	2.34
6671	9037	5.417580	GCTTGGAGGTGGTGAAATAATGTTA	59.582	40.000	0.00	0.00	0.00	2.41
6672	9038	4.220602	GCTTGGAGGTGGTGAAATAATGTT	59.779	41.667	0.00	0.00	0.00	2.71
6673	9039	3.763897	GCTTGGAGGTGGTGAAATAATGT	59.236	43.478	0.00	0.00	0.00	2.71
6674	9040	3.131046	GGCTTGGAGGTGGTGAAATAATG	59.869	47.826	0.00	0.00	0.00	1.90
6675	9041	3.245586	TGGCTTGGAGGTGGTGAAATAAT	60.246	43.478	0.00	0.00	0.00	1.28
6676	9042	2.109128	TGGCTTGGAGGTGGTGAAATAA	59.891	45.455	0.00	0.00	0.00	1.40
6678	9044	0.482446	TGGCTTGGAGGTGGTGAAAT	59.518	50.000	0.00	0.00	0.00	2.17
6679	9045	0.260230	TTGGCTTGGAGGTGGTGAAA	59.740	50.000	0.00	0.00	0.00	2.69
6680	9046	0.482446	ATTGGCTTGGAGGTGGTGAA	59.518	50.000	0.00	0.00	0.00	3.18
6681	9047	0.251297	CATTGGCTTGGAGGTGGTGA	60.251	55.000	0.00	0.00	0.00	4.02
6682	9048	1.252904	CCATTGGCTTGGAGGTGGTG	61.253	60.000	1.31	0.00	39.25	4.17
6684	9050	0.967380	GACCATTGGCTTGGAGGTGG	60.967	60.000	13.01	0.00	39.25	4.61
6685	9051	0.251297	TGACCATTGGCTTGGAGGTG	60.251	55.000	13.01	0.00	39.25	4.00
6687	9053	1.308069	CGTGACCATTGGCTTGGAGG	61.308	60.000	13.01	0.00	39.25	4.30
6688	9054	0.606401	ACGTGACCATTGGCTTGGAG	60.606	55.000	13.01	5.11	39.25	3.86
6689	9055	0.888736	CACGTGACCATTGGCTTGGA	60.889	55.000	10.90	0.00	39.25	3.53
6690	9056	1.580942	CACGTGACCATTGGCTTGG	59.419	57.895	10.90	5.63	42.82	3.61
6691	9057	1.580942	CCACGTGACCATTGGCTTG	59.419	57.895	19.30	0.00	0.00	4.01
6692	9058	4.079446	CCACGTGACCATTGGCTT	57.921	55.556	19.30	0.00	0.00	4.35
6696	9062	0.733566	GCATTGCCACGTGACCATTG	60.734	55.000	19.30	18.71	0.00	2.82
6698	9064	1.603171	TGCATTGCCACGTGACCAT	60.603	52.632	19.30	0.00	0.00	3.55
6699	9065	2.203266	TGCATTGCCACGTGACCA	60.203	55.556	19.30	11.03	0.00	4.02
6700	9066	2.255252	GTGCATTGCCACGTGACC	59.745	61.111	19.30	8.22	0.00	4.02
6714	9080	0.179045	ACCTATCAAGATGCCCGTGC	60.179	55.000	0.00	0.00	38.26	5.34
6715	9081	2.332063	AACCTATCAAGATGCCCGTG	57.668	50.000	0.00	0.00	0.00	4.94
6716	9082	4.389374	CAATAACCTATCAAGATGCCCGT	58.611	43.478	0.00	0.00	0.00	5.28
6717	9083	3.753272	CCAATAACCTATCAAGATGCCCG	59.247	47.826	0.00	0.00	0.00	6.13
6718	9084	4.985538	TCCAATAACCTATCAAGATGCCC	58.014	43.478	0.00	0.00	0.00	5.36
6719	9085	8.814038	AATATCCAATAACCTATCAAGATGCC	57.186	34.615	0.00	0.00	0.00	4.40
6741	9107	6.096705	TCGTCGGGGTTACTAAGATGAAAATA	59.903	38.462	0.00	0.00	0.00	1.40
6765	9131	4.565028	CCAACACTACCCCCTCTTACTTTC	60.565	50.000	0.00	0.00	0.00	2.62
6768	9134	2.113052	TCCAACACTACCCCCTCTTACT	59.887	50.000	0.00	0.00	0.00	2.24
6780	9148	5.590530	ACACAAAGCATTTTCCAACACTA	57.409	34.783	0.00	0.00	35.03	2.74
6785	9153	5.843673	TGTCTACACAAAGCATTTTCCAA	57.156	34.783	0.00	0.00	35.03	3.53
6799	9662	5.691754	CCAAGCCATTTTTCTTTGTCTACAC	59.308	40.000	0.00	0.00	0.00	2.90
6802	9665	4.558496	CGCCAAGCCATTTTTCTTTGTCTA	60.558	41.667	0.00	0.00	0.00	2.59
6819	9682	1.879380	TGAATTCAGAACACCGCCAAG	59.121	47.619	3.38	0.00	0.00	3.61
6825	9688	5.998363	AGACCTAACTTGAATTCAGAACACC	59.002	40.000	8.41	0.00	0.00	4.16
6826	9689	6.706270	TCAGACCTAACTTGAATTCAGAACAC	59.294	38.462	8.41	0.00	0.00	3.32
6827	9690	6.826668	TCAGACCTAACTTGAATTCAGAACA	58.173	36.000	8.41	0.00	0.00	3.18
6881	9755	5.363562	TCTATATGCCATGCCCAATCTAG	57.636	43.478	0.00	0.00	0.00	2.43
6986	9869	4.097437	CACACATTGGATTCAGGGATTCAG	59.903	45.833	0.00	0.00	0.00	3.02
6994	9878	6.474427	GTCATAATTGCACACATTGGATTCAG	59.526	38.462	0.00	0.00	0.00	3.02
7041	9958	9.653287	AGAGAAATCTTAACGTCAAATGTGATA	57.347	29.630	0.00	0.00	35.80	2.15
7070	9987	1.224592	GGACCCGGAATCTGCACAT	59.775	57.895	0.73	0.00	0.00	3.21
7107	10024	4.733815	GCCTTGTCATGCTCAATCATCAAG	60.734	45.833	4.21	0.00	32.50	3.02
7138	10055	1.463674	GGTAACTTCATGGCCCACAG	58.536	55.000	0.00	0.00	0.00	3.66
7197	12500	1.607801	CCTCGGGATGCTCTGTCACA	61.608	60.000	0.00	0.00	0.00	3.58
7266	12569	4.508662	CAGGTTTGATAGAGGACCAGAAC	58.491	47.826	0.00	0.00	34.60	3.01
7347	12650	0.237235	TGCCGACGAAAATTGCAGTC	59.763	50.000	0.00	0.00	0.00	3.51
7472	12775	2.238521	ACCATGTTTTGAATGAGGCGT	58.761	42.857	0.00	0.00	0.00	5.68
7479	12782	2.351350	GCCGACGAACCATGTTTTGAAT	60.351	45.455	0.00	0.00	0.00	2.57
7520	12823	1.375140	CCACACTCTGATGCGTGCT	60.375	57.895	0.00	0.00	32.59	4.40
7521	12824	0.950555	TTCCACACTCTGATGCGTGC	60.951	55.000	0.00	0.00	32.59	5.34
7547	12850	3.017442	CTGGTGACGATCTCCTTGTCTA	58.983	50.000	0.00	0.00	38.85	2.59
7602	12906	0.464013	ACTGGACGAGGACGATCGAT	60.464	55.000	24.34	7.06	45.56	3.59
7684	12988	4.143333	CGTGGGGCCGAAGACGAT	62.143	66.667	9.59	0.00	42.66	3.73
7777	13426	6.233905	TGTAGTTTAGGAAGCATGAGCATA	57.766	37.500	0.00	0.00	45.49	3.14
7779	13428	4.551702	TGTAGTTTAGGAAGCATGAGCA	57.448	40.909	0.00	0.00	45.49	4.26
7802	13451	3.519510	AGCCTGCTAGACATTTAGGTGAA	59.480	43.478	0.00	0.00	0.00	3.18
7809	13458	3.634397	TTGCTAGCCTGCTAGACATTT	57.366	42.857	26.17	0.00	46.56	2.32
7817	13466	2.505405	CATGATCATTGCTAGCCTGCT	58.495	47.619	13.29	1.08	0.00	4.24
7829	13478	5.593909	TGTTTATTCGGAAAGCCATGATCAT	59.406	36.000	1.18	1.18	0.00	2.45
7859	13508	9.936759	TGATACTGTTTACTTCATACATGACAA	57.063	29.630	0.00	0.00	36.36	3.18
7861	13510	9.587772	AGTGATACTGTTTACTTCATACATGAC	57.412	33.333	0.00	0.00	36.36	3.06
7864	13513	9.751542	GCTAGTGATACTGTTTACTTCATACAT	57.248	33.333	0.00	0.00	0.00	2.29
7865	13514	8.745590	TGCTAGTGATACTGTTTACTTCATACA	58.254	33.333	0.00	0.00	0.00	2.29
7866	13515	9.239002	CTGCTAGTGATACTGTTTACTTCATAC	57.761	37.037	0.00	0.00	0.00	2.39
7868	13517	7.976734	GTCTGCTAGTGATACTGTTTACTTCAT	59.023	37.037	0.00	0.00	0.00	2.57
7889	13541	6.615088	TCTTATTCTTGCTTTTCATGTCTGC	58.385	36.000	0.00	0.00	0.00	4.26
7921	13573	5.507482	CGGAGACATACGATTCACCTTACAT	60.507	44.000	0.00	0.00	33.12	2.29
7927	13579	2.098607	TCACGGAGACATACGATTCACC	59.901	50.000	0.00	0.00	35.79	4.02
7954	13606	7.478520	AAGTCACGGATTACATGCTTATTAC	57.521	36.000	0.00	0.00	0.00	1.89
7962	13614	4.685169	AAGCAAAGTCACGGATTACATG	57.315	40.909	0.00	0.00	0.00	3.21
7963	13615	5.488341	ACTAAGCAAAGTCACGGATTACAT	58.512	37.500	0.00	0.00	0.00	2.29
8081	13736	3.690628	CCTATTTTAGTTTTTCGCCCGGA	59.309	43.478	0.73	0.00	0.00	5.14
8101	13756	3.941704	TTGTTCAAAAATTTGGGCCCT	57.058	38.095	25.70	0.00	38.66	5.19
8152	13807	7.379059	ACATGTAATCCAATGAGAGTATCCA	57.621	36.000	0.00	0.00	33.66	3.41
8189	13844	9.249457	CAGCTCGAGACTTTGTTATATGAATTA	57.751	33.333	18.75	0.00	0.00	1.40
8285	13941	7.068962	TCCATACTATGAAGGTACACGATTCAA	59.931	37.037	0.00	0.00	36.59	2.69
8326	14027	2.119495	AGGCCATACAACACTAGGAGG	58.881	52.381	5.01	0.00	0.00	4.30
8336	14037	4.042062	CCTCTCCATAATCAGGCCATACAA	59.958	45.833	5.01	0.00	0.00	2.41
8409	14110	1.340991	GCCTGAGCATTTTGACCCCTA	60.341	52.381	0.00	0.00	39.53	3.53
8420	14121	0.924823	AGGAATCCAAGCCTGAGCAT	59.075	50.000	0.61	0.00	43.56	3.79
8435	14136	6.587206	TTGTCAACATGCATGATTTAGGAA	57.413	33.333	32.75	12.72	0.00	3.36
8463	14172	2.009774	CGATGGTGGGTAAGCAAGAAG	58.990	52.381	0.00	0.00	40.33	2.85
8573	14282	7.905604	TCTTGTGTATAAGTGAAATGACTGG	57.094	36.000	0.00	0.00	0.00	4.00
8650	14362	1.304052	CATTCCGGCCAAAGGACCA	60.304	57.895	2.24	0.00	37.53	4.02
8742	14454	8.305317	AGAAAGTATAAAGAGTGAGTTAAGCGT	58.695	33.333	0.00	0.00	0.00	5.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.