Multiple sequence alignment - TraesCS7D01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G102400 chr7D 100.000 3548 0 0 1 3548 62120938 62124485 0.000000e+00 6553
1 TraesCS7D01G102400 chr7D 95.179 2800 123 10 167 2962 62279191 62281982 0.000000e+00 4412
2 TraesCS7D01G102400 chr7D 81.241 1354 241 11 1140 2486 61228788 61227441 0.000000e+00 1081
3 TraesCS7D01G102400 chr7D 95.139 144 7 0 27 170 62277987 62278130 9.910000e-56 228
4 TraesCS7D01G102400 chr7A 96.871 2972 77 8 1 2965 65440776 65443738 0.000000e+00 4959
5 TraesCS7D01G102400 chr7A 81.596 1353 238 10 1140 2486 65154700 65153353 0.000000e+00 1109
6 TraesCS7D01G102400 chr7A 81.266 395 68 3 1136 1527 65050153 65049762 7.390000e-82 315
7 TraesCS7D01G102400 chr7A 93.210 162 11 0 3387 3548 65443735 65443896 4.580000e-59 239
8 TraesCS7D01G102400 chr2D 80.513 1247 240 3 1256 2501 601263799 601262555 0.000000e+00 953
9 TraesCS7D01G102400 chr2B 79.867 1207 231 9 1251 2451 731536509 731535309 0.000000e+00 872
10 TraesCS7D01G102400 chr2B 78.625 669 132 8 1800 2464 731526309 731525648 1.960000e-117 433
11 TraesCS7D01G102400 chr7B 77.078 1143 218 28 1336 2468 3507862 3506754 1.400000e-173 619
12 TraesCS7D01G102400 chr7B 89.242 409 38 5 2968 3372 490240873 490241279 1.140000e-139 507
13 TraesCS7D01G102400 chr7B 88.152 422 38 10 2966 3379 162922187 162921770 3.180000e-135 492
14 TraesCS7D01G102400 chr6B 90.000 410 33 7 2966 3372 159399873 159399469 1.130000e-144 523
15 TraesCS7D01G102400 chr3D 89.260 419 33 11 2966 3374 25967601 25967185 6.790000e-142 514
16 TraesCS7D01G102400 chr3D 88.757 169 12 4 2794 2962 15873054 15873215 2.160000e-47 200
17 TraesCS7D01G102400 chr6D 89.851 404 33 8 2966 3364 432677929 432677529 2.440000e-141 512
18 TraesCS7D01G102400 chr1B 89.189 407 37 7 2966 3367 652303234 652303638 5.290000e-138 501
19 TraesCS7D01G102400 chr4A 88.971 408 38 6 2968 3368 574507074 574506667 6.840000e-137 497
20 TraesCS7D01G102400 chr4B 88.537 410 40 6 2966 3372 574069632 574069227 1.140000e-134 490
21 TraesCS7D01G102400 chr4B 86.628 172 16 3 2794 2965 552777548 552777384 2.180000e-42 183
22 TraesCS7D01G102400 chr3B 88.406 414 37 5 2962 3372 559909562 559909967 4.120000e-134 488


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G102400 chr7D 62120938 62124485 3547 False 6553 6553 100.0000 1 3548 1 chr7D.!!$F1 3547
1 TraesCS7D01G102400 chr7D 62277987 62281982 3995 False 2320 4412 95.1590 27 2962 2 chr7D.!!$F2 2935
2 TraesCS7D01G102400 chr7D 61227441 61228788 1347 True 1081 1081 81.2410 1140 2486 1 chr7D.!!$R1 1346
3 TraesCS7D01G102400 chr7A 65440776 65443896 3120 False 2599 4959 95.0405 1 3548 2 chr7A.!!$F1 3547
4 TraesCS7D01G102400 chr7A 65153353 65154700 1347 True 1109 1109 81.5960 1140 2486 1 chr7A.!!$R2 1346
5 TraesCS7D01G102400 chr2D 601262555 601263799 1244 True 953 953 80.5130 1256 2501 1 chr2D.!!$R1 1245
6 TraesCS7D01G102400 chr2B 731535309 731536509 1200 True 872 872 79.8670 1251 2451 1 chr2B.!!$R2 1200
7 TraesCS7D01G102400 chr2B 731525648 731526309 661 True 433 433 78.6250 1800 2464 1 chr2B.!!$R1 664
8 TraesCS7D01G102400 chr7B 3506754 3507862 1108 True 619 619 77.0780 1336 2468 1 chr7B.!!$R1 1132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 1359 1.135139 GCATCTTGCTAGACTCGGTGA 59.865 52.381 0.0 0.0 40.96 4.02 F
1209 2283 0.036022 GCTATCTGGCCCATCCACTC 59.964 60.000 0.0 0.0 40.72 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 2564 0.181114 ACCAACTCTGCTTCACTGCA 59.819 50.0 0.00 0.0 41.05 4.41 R
3109 4189 0.103755 TGCCGAGAGCTGCTTAGATG 59.896 55.0 2.53 0.0 44.23 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 3.377172 CCCTGGTTTTAGGATTGTTAGCG 59.623 47.826 0.00 0.00 40.42 4.26
188 1253 2.882927 TACCACTAGCATACAAGCCG 57.117 50.000 0.00 0.00 34.23 5.52
204 1269 1.974875 CCGTACACTTTTGGGCCCC 60.975 63.158 22.27 0.85 0.00 5.80
294 1359 1.135139 GCATCTTGCTAGACTCGGTGA 59.865 52.381 0.00 0.00 40.96 4.02
312 1377 5.462068 TCGGTGATTGATAATCGACAACATC 59.538 40.000 0.00 0.00 40.84 3.06
563 1630 6.607600 AGTCCTAATCTTAGCATGTGTACTCA 59.392 38.462 0.00 0.00 0.00 3.41
1033 2107 2.740055 GTCACCTCTGCAGGCACG 60.740 66.667 15.13 0.62 45.05 5.34
1091 2165 2.046023 TCAGGCGCCTCACATTGG 60.046 61.111 30.29 14.35 0.00 3.16
1209 2283 0.036022 GCTATCTGGCCCATCCACTC 59.964 60.000 0.00 0.00 40.72 3.51
1224 2298 4.193826 TCCACTCACTTCTTGTCATAGC 57.806 45.455 0.00 0.00 0.00 2.97
1346 2420 0.765510 AAAGGCAACCTTCCTCGAGT 59.234 50.000 12.31 0.00 43.92 4.18
1508 2585 1.811558 GCAGTGAAGCAGAGTTGGTCA 60.812 52.381 0.00 0.00 32.95 4.02
1658 2735 3.722728 AGTTACGGGGTGATATTCGTC 57.277 47.619 0.00 0.00 37.10 4.20
1864 2941 1.748493 GGAGTGGCAAAGTTGTTGTCA 59.252 47.619 0.00 0.00 0.00 3.58
1905 2982 3.367292 CGGTTTAGGCTTGTGCATTTCAT 60.367 43.478 0.00 0.00 41.91 2.57
1993 3070 0.106469 ACCTAGGCATCGCTCTCTCA 60.106 55.000 9.30 0.00 0.00 3.27
2018 3095 4.319177 AGATCTTACTGTTGTTGCTGGAC 58.681 43.478 0.00 0.00 0.00 4.02
2550 3627 8.856974 TCAGGAGGAGGGAGTAATATGATAATA 58.143 37.037 0.00 0.00 0.00 0.98
2721 3801 5.046663 TGTGGTTGTACAGATGAGCATCTTA 60.047 40.000 10.15 4.76 45.31 2.10
2756 3836 7.280356 GGACAACATCCCAATTAGTACACTAT 58.720 38.462 0.00 0.00 42.46 2.12
2812 3892 0.668706 ACTCGCTGTGTGAGACATGC 60.669 55.000 14.04 0.00 42.10 4.06
2825 3905 3.255888 TGAGACATGCGACTTCTACAACT 59.744 43.478 0.00 0.00 0.00 3.16
2863 3943 3.812262 AGGGTTTGGTATACGTTATGGC 58.188 45.455 0.00 0.00 0.00 4.40
2864 3944 3.457012 AGGGTTTGGTATACGTTATGGCT 59.543 43.478 0.00 0.00 0.00 4.75
2865 3945 4.080186 AGGGTTTGGTATACGTTATGGCTT 60.080 41.667 0.00 0.00 0.00 4.35
2867 3947 5.999600 GGGTTTGGTATACGTTATGGCTTAT 59.000 40.000 0.00 0.00 0.00 1.73
2868 3948 6.072893 GGGTTTGGTATACGTTATGGCTTATG 60.073 42.308 0.00 0.00 0.00 1.90
2869 3949 6.072893 GGTTTGGTATACGTTATGGCTTATGG 60.073 42.308 0.00 0.00 0.00 2.74
2870 3950 5.155278 TGGTATACGTTATGGCTTATGGG 57.845 43.478 0.00 0.00 0.00 4.00
2871 3951 4.839550 TGGTATACGTTATGGCTTATGGGA 59.160 41.667 0.00 0.00 0.00 4.37
2872 3952 5.173664 GGTATACGTTATGGCTTATGGGAC 58.826 45.833 0.00 0.00 0.00 4.46
2873 3953 2.234300 ACGTTATGGCTTATGGGACG 57.766 50.000 0.00 0.00 35.39 4.79
2965 4045 8.673711 TGTGTACTTTGTTGCTGAATTATATCC 58.326 33.333 0.00 0.00 0.00 2.59
2966 4046 7.850982 GTGTACTTTGTTGCTGAATTATATCCG 59.149 37.037 0.00 0.00 0.00 4.18
2967 4047 6.377327 ACTTTGTTGCTGAATTATATCCGG 57.623 37.500 0.00 0.00 0.00 5.14
2968 4048 6.119536 ACTTTGTTGCTGAATTATATCCGGA 58.880 36.000 6.61 6.61 0.00 5.14
2969 4049 6.601613 ACTTTGTTGCTGAATTATATCCGGAA 59.398 34.615 9.01 0.00 0.00 4.30
2970 4050 7.122055 ACTTTGTTGCTGAATTATATCCGGAAA 59.878 33.333 9.01 0.00 0.00 3.13
2971 4051 7.581213 TTGTTGCTGAATTATATCCGGAAAT 57.419 32.000 9.01 0.00 0.00 2.17
2972 4052 7.202016 TGTTGCTGAATTATATCCGGAAATC 57.798 36.000 9.01 1.28 0.00 2.17
2973 4053 6.206634 TGTTGCTGAATTATATCCGGAAATCC 59.793 38.462 9.01 0.00 0.00 3.01
2974 4054 5.875224 TGCTGAATTATATCCGGAAATCCA 58.125 37.500 9.01 0.00 35.14 3.41
2975 4055 6.303054 TGCTGAATTATATCCGGAAATCCAA 58.697 36.000 9.01 0.00 35.14 3.53
2976 4056 6.430925 TGCTGAATTATATCCGGAAATCCAAG 59.569 38.462 9.01 4.16 35.14 3.61
2977 4057 6.431234 GCTGAATTATATCCGGAAATCCAAGT 59.569 38.462 9.01 0.00 35.14 3.16
2978 4058 7.361286 GCTGAATTATATCCGGAAATCCAAGTC 60.361 40.741 9.01 8.07 35.14 3.01
2979 4059 6.649141 TGAATTATATCCGGAAATCCAAGTCG 59.351 38.462 9.01 0.00 35.14 4.18
2980 4060 2.902705 TATCCGGAAATCCAAGTCGG 57.097 50.000 9.01 0.00 41.80 4.79
2981 4061 0.909623 ATCCGGAAATCCAAGTCGGT 59.090 50.000 9.01 0.00 41.27 4.69
2982 4062 0.036765 TCCGGAAATCCAAGTCGGTG 60.037 55.000 0.00 0.00 41.27 4.94
2983 4063 1.644786 CCGGAAATCCAAGTCGGTGC 61.645 60.000 0.00 0.00 36.38 5.01
2984 4064 1.644786 CGGAAATCCAAGTCGGTGCC 61.645 60.000 0.00 0.00 35.57 5.01
2985 4065 1.313091 GGAAATCCAAGTCGGTGCCC 61.313 60.000 0.00 0.00 35.57 5.36
2986 4066 0.608035 GAAATCCAAGTCGGTGCCCA 60.608 55.000 0.00 0.00 35.57 5.36
2987 4067 0.609131 AAATCCAAGTCGGTGCCCAG 60.609 55.000 0.00 0.00 35.57 4.45
2988 4068 2.484287 AATCCAAGTCGGTGCCCAGG 62.484 60.000 0.00 0.00 35.57 4.45
2990 4070 4.335647 CAAGTCGGTGCCCAGGCT 62.336 66.667 10.58 0.00 42.51 4.58
2991 4071 4.021925 AAGTCGGTGCCCAGGCTC 62.022 66.667 10.58 6.18 42.51 4.70
2993 4073 4.101448 GTCGGTGCCCAGGCTCAT 62.101 66.667 10.58 0.00 42.51 2.90
2994 4074 3.785859 TCGGTGCCCAGGCTCATC 61.786 66.667 10.58 0.00 42.51 2.92
2995 4075 3.790437 CGGTGCCCAGGCTCATCT 61.790 66.667 10.58 0.00 42.51 2.90
2996 4076 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
2997 4077 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
2998 4078 3.013327 TGCCCAGGCTCATCTGCT 61.013 61.111 10.58 0.00 42.51 4.24
2999 4079 2.203181 GCCCAGGCTCATCTGCTC 60.203 66.667 0.08 0.00 38.26 4.26
3000 4080 2.509916 CCCAGGCTCATCTGCTCC 59.490 66.667 0.00 0.00 33.64 4.70
3001 4081 2.509916 CCAGGCTCATCTGCTCCC 59.490 66.667 0.00 0.00 33.64 4.30
3002 4082 2.108566 CAGGCTCATCTGCTCCCG 59.891 66.667 0.00 0.00 0.00 5.14
3003 4083 3.859414 AGGCTCATCTGCTCCCGC 61.859 66.667 0.00 0.00 0.00 6.13
3004 4084 3.859414 GGCTCATCTGCTCCCGCT 61.859 66.667 0.00 0.00 36.97 5.52
3005 4085 2.280052 GCTCATCTGCTCCCGCTC 60.280 66.667 0.00 0.00 36.97 5.03
3006 4086 3.086391 GCTCATCTGCTCCCGCTCA 62.086 63.158 0.00 0.00 36.97 4.26
3007 4087 1.067749 CTCATCTGCTCCCGCTCAG 59.932 63.158 0.00 0.00 36.97 3.35
3008 4088 1.380380 TCATCTGCTCCCGCTCAGA 60.380 57.895 0.00 0.00 42.72 3.27
3009 4089 0.972471 TCATCTGCTCCCGCTCAGAA 60.972 55.000 0.00 0.00 41.96 3.02
3010 4090 0.107993 CATCTGCTCCCGCTCAGAAA 60.108 55.000 0.00 0.00 41.96 2.52
3011 4091 0.615331 ATCTGCTCCCGCTCAGAAAA 59.385 50.000 0.00 0.00 41.96 2.29
3012 4092 0.396435 TCTGCTCCCGCTCAGAAAAA 59.604 50.000 0.00 0.00 36.50 1.94
3076 4156 7.490962 TTTAGGTGGTAGATAATTTGATGCG 57.509 36.000 0.00 0.00 0.00 4.73
3077 4157 5.036117 AGGTGGTAGATAATTTGATGCGT 57.964 39.130 0.00 0.00 0.00 5.24
3078 4158 4.816385 AGGTGGTAGATAATTTGATGCGTG 59.184 41.667 0.00 0.00 0.00 5.34
3079 4159 4.814234 GGTGGTAGATAATTTGATGCGTGA 59.186 41.667 0.00 0.00 0.00 4.35
3080 4160 5.050091 GGTGGTAGATAATTTGATGCGTGAG 60.050 44.000 0.00 0.00 0.00 3.51
3081 4161 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
3082 4162 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
3083 4163 5.177696 GGTAGATAATTTGATGCGTGAGGTC 59.822 44.000 0.00 0.00 0.00 3.85
3084 4164 4.130118 AGATAATTTGATGCGTGAGGTCC 58.870 43.478 0.00 0.00 0.00 4.46
3085 4165 2.198827 AATTTGATGCGTGAGGTCCA 57.801 45.000 0.00 0.00 0.00 4.02
3086 4166 1.453155 ATTTGATGCGTGAGGTCCAC 58.547 50.000 0.00 0.00 42.30 4.02
3087 4167 0.107643 TTTGATGCGTGAGGTCCACA 59.892 50.000 0.00 0.00 45.98 4.17
3088 4168 0.602638 TTGATGCGTGAGGTCCACAC 60.603 55.000 9.26 9.26 45.98 3.82
3089 4169 1.741770 GATGCGTGAGGTCCACACC 60.742 63.158 13.16 7.27 45.98 4.16
3090 4170 2.449031 GATGCGTGAGGTCCACACCA 62.449 60.000 13.16 12.02 46.68 4.17
3091 4171 2.050836 ATGCGTGAGGTCCACACCAA 62.051 55.000 13.16 2.98 46.68 3.67
3092 4172 1.525077 GCGTGAGGTCCACACCAAA 60.525 57.895 13.16 0.00 46.68 3.28
3093 4173 0.889186 GCGTGAGGTCCACACCAAAT 60.889 55.000 13.16 0.00 46.68 2.32
3094 4174 1.604604 CGTGAGGTCCACACCAAATT 58.395 50.000 13.16 0.00 46.68 1.82
3095 4175 1.953686 CGTGAGGTCCACACCAAATTT 59.046 47.619 13.16 0.00 46.68 1.82
3096 4176 2.031157 CGTGAGGTCCACACCAAATTTC 60.031 50.000 13.16 0.00 46.68 2.17
3097 4177 2.955660 GTGAGGTCCACACCAAATTTCA 59.044 45.455 8.17 0.00 46.68 2.69
3098 4178 3.383185 GTGAGGTCCACACCAAATTTCAA 59.617 43.478 8.17 0.00 46.68 2.69
3099 4179 3.383185 TGAGGTCCACACCAAATTTCAAC 59.617 43.478 0.00 0.00 46.68 3.18
3100 4180 2.698274 AGGTCCACACCAAATTTCAACC 59.302 45.455 0.00 0.00 46.68 3.77
3101 4181 2.224185 GGTCCACACCAAATTTCAACCC 60.224 50.000 0.00 0.00 43.17 4.11
3102 4182 2.432510 GTCCACACCAAATTTCAACCCA 59.567 45.455 0.00 0.00 0.00 4.51
3103 4183 3.070878 GTCCACACCAAATTTCAACCCAT 59.929 43.478 0.00 0.00 0.00 4.00
3104 4184 3.713764 TCCACACCAAATTTCAACCCATT 59.286 39.130 0.00 0.00 0.00 3.16
3105 4185 4.164988 TCCACACCAAATTTCAACCCATTT 59.835 37.500 0.00 0.00 0.00 2.32
3106 4186 4.275443 CCACACCAAATTTCAACCCATTTG 59.725 41.667 0.00 0.00 39.25 2.32
3112 4192 6.484818 CAAATTTCAACCCATTTGGACATC 57.515 37.500 0.00 0.00 36.93 3.06
3113 4193 6.232692 CAAATTTCAACCCATTTGGACATCT 58.767 36.000 0.00 0.00 36.93 2.90
3114 4194 7.385267 CAAATTTCAACCCATTTGGACATCTA 58.615 34.615 0.00 0.00 36.93 1.98
3115 4195 7.552050 AATTTCAACCCATTTGGACATCTAA 57.448 32.000 0.00 0.00 37.39 2.10
3116 4196 6.588719 TTTCAACCCATTTGGACATCTAAG 57.411 37.500 0.00 0.00 37.39 2.18
3117 4197 4.016444 TCAACCCATTTGGACATCTAAGC 58.984 43.478 0.00 0.00 37.39 3.09
3118 4198 3.737559 ACCCATTTGGACATCTAAGCA 57.262 42.857 0.00 0.00 37.39 3.91
3119 4199 3.624777 ACCCATTTGGACATCTAAGCAG 58.375 45.455 0.00 0.00 37.39 4.24
3120 4200 2.360165 CCCATTTGGACATCTAAGCAGC 59.640 50.000 0.00 0.00 37.39 5.25
3121 4201 3.285484 CCATTTGGACATCTAAGCAGCT 58.715 45.455 0.00 0.00 37.39 4.24
3122 4202 3.314635 CCATTTGGACATCTAAGCAGCTC 59.685 47.826 0.00 0.00 37.39 4.09
3123 4203 3.988976 TTTGGACATCTAAGCAGCTCT 57.011 42.857 0.00 0.00 0.00 4.09
3124 4204 3.533606 TTGGACATCTAAGCAGCTCTC 57.466 47.619 0.00 0.00 0.00 3.20
3125 4205 1.406898 TGGACATCTAAGCAGCTCTCG 59.593 52.381 0.00 0.00 0.00 4.04
3126 4206 1.269517 GGACATCTAAGCAGCTCTCGG 60.270 57.143 0.00 0.00 0.00 4.63
3127 4207 0.103937 ACATCTAAGCAGCTCTCGGC 59.896 55.000 0.00 0.00 42.19 5.54
3128 4208 0.103755 CATCTAAGCAGCTCTCGGCA 59.896 55.000 0.00 0.00 44.79 5.69
3129 4209 0.826715 ATCTAAGCAGCTCTCGGCAA 59.173 50.000 0.00 0.00 44.79 4.52
3130 4210 0.608130 TCTAAGCAGCTCTCGGCAAA 59.392 50.000 0.00 0.00 44.79 3.68
3131 4211 1.001974 TCTAAGCAGCTCTCGGCAAAA 59.998 47.619 0.00 0.00 44.79 2.44
3132 4212 1.806542 CTAAGCAGCTCTCGGCAAAAA 59.193 47.619 0.00 0.00 44.79 1.94
3152 4232 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
3153 4233 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
3154 4234 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
3155 4235 3.315191 AGACAAATCGGGTCAAAACAGTG 59.685 43.478 0.00 0.00 37.74 3.66
3156 4236 2.223711 ACAAATCGGGTCAAAACAGTGC 60.224 45.455 0.00 0.00 0.00 4.40
3157 4237 0.591170 AATCGGGTCAAAACAGTGCG 59.409 50.000 0.00 0.00 0.00 5.34
3158 4238 0.534203 ATCGGGTCAAAACAGTGCGT 60.534 50.000 0.00 0.00 0.00 5.24
3159 4239 1.010125 CGGGTCAAAACAGTGCGTG 60.010 57.895 0.00 0.00 0.00 5.34
3160 4240 1.433053 CGGGTCAAAACAGTGCGTGA 61.433 55.000 0.00 0.00 0.00 4.35
3161 4241 0.736053 GGGTCAAAACAGTGCGTGAA 59.264 50.000 0.00 0.00 0.00 3.18
3162 4242 1.533129 GGGTCAAAACAGTGCGTGAAC 60.533 52.381 0.00 0.00 0.00 3.18
3163 4243 1.131504 GGTCAAAACAGTGCGTGAACA 59.868 47.619 2.35 0.00 0.00 3.18
3164 4244 2.440501 GTCAAAACAGTGCGTGAACAG 58.559 47.619 0.00 0.00 0.00 3.16
3165 4245 2.080693 TCAAAACAGTGCGTGAACAGT 58.919 42.857 0.00 0.00 0.00 3.55
3166 4246 3.062909 GTCAAAACAGTGCGTGAACAGTA 59.937 43.478 0.00 0.00 0.00 2.74
3167 4247 3.685272 TCAAAACAGTGCGTGAACAGTAA 59.315 39.130 0.00 0.00 0.00 2.24
3168 4248 4.154375 TCAAAACAGTGCGTGAACAGTAAA 59.846 37.500 0.00 0.00 0.00 2.01
3169 4249 3.668596 AACAGTGCGTGAACAGTAAAC 57.331 42.857 0.00 0.00 0.00 2.01
3170 4250 2.623535 ACAGTGCGTGAACAGTAAACA 58.376 42.857 0.00 0.00 0.00 2.83
3171 4251 3.202906 ACAGTGCGTGAACAGTAAACAT 58.797 40.909 0.00 0.00 0.00 2.71
3172 4252 3.625764 ACAGTGCGTGAACAGTAAACATT 59.374 39.130 0.00 0.00 0.00 2.71
3173 4253 4.095782 ACAGTGCGTGAACAGTAAACATTT 59.904 37.500 0.00 0.00 0.00 2.32
3174 4254 5.034152 CAGTGCGTGAACAGTAAACATTTT 58.966 37.500 0.00 0.00 0.00 1.82
3175 4255 5.514914 CAGTGCGTGAACAGTAAACATTTTT 59.485 36.000 0.00 0.00 0.00 1.94
3176 4256 6.689241 CAGTGCGTGAACAGTAAACATTTTTA 59.311 34.615 0.00 0.00 0.00 1.52
3177 4257 6.689669 AGTGCGTGAACAGTAAACATTTTTAC 59.310 34.615 6.41 6.41 45.22 2.01
3178 4258 6.469595 GTGCGTGAACAGTAAACATTTTTACA 59.530 34.615 15.08 0.00 46.66 2.41
3179 4259 6.689241 TGCGTGAACAGTAAACATTTTTACAG 59.311 34.615 15.08 10.35 46.66 2.74
3180 4260 6.908284 GCGTGAACAGTAAACATTTTTACAGA 59.092 34.615 15.08 0.00 46.66 3.41
3181 4261 7.097168 GCGTGAACAGTAAACATTTTTACAGAC 60.097 37.037 15.08 8.61 46.66 3.51
3182 4262 7.375017 CGTGAACAGTAAACATTTTTACAGACC 59.625 37.037 15.08 6.74 46.66 3.85
3183 4263 7.646526 GTGAACAGTAAACATTTTTACAGACCC 59.353 37.037 15.08 4.91 46.66 4.46
3184 4264 6.644248 ACAGTAAACATTTTTACAGACCCC 57.356 37.500 15.08 0.00 46.66 4.95
3185 4265 6.130569 ACAGTAAACATTTTTACAGACCCCA 58.869 36.000 15.08 0.00 46.66 4.96
3186 4266 6.608002 ACAGTAAACATTTTTACAGACCCCAA 59.392 34.615 15.08 0.00 46.66 4.12
3187 4267 7.289084 ACAGTAAACATTTTTACAGACCCCAAT 59.711 33.333 15.08 0.00 46.66 3.16
3188 4268 8.147704 CAGTAAACATTTTTACAGACCCCAATT 58.852 33.333 15.08 0.00 46.66 2.32
3189 4269 8.710239 AGTAAACATTTTTACAGACCCCAATTT 58.290 29.630 15.08 0.00 46.66 1.82
3190 4270 9.332502 GTAAACATTTTTACAGACCCCAATTTT 57.667 29.630 9.18 0.00 44.54 1.82
3191 4271 7.800155 AACATTTTTACAGACCCCAATTTTG 57.200 32.000 0.00 0.00 0.00 2.44
3192 4272 6.894682 ACATTTTTACAGACCCCAATTTTGT 58.105 32.000 0.00 0.00 0.00 2.83
3193 4273 6.989759 ACATTTTTACAGACCCCAATTTTGTC 59.010 34.615 0.00 0.00 0.00 3.18
3194 4274 6.800072 TTTTTACAGACCCCAATTTTGTCT 57.200 33.333 0.00 0.00 39.86 3.41
3195 4275 6.800072 TTTTACAGACCCCAATTTTGTCTT 57.200 33.333 0.00 0.00 37.25 3.01
3196 4276 6.800072 TTTACAGACCCCAATTTTGTCTTT 57.200 33.333 0.00 0.00 37.25 2.52
3197 4277 6.800072 TTACAGACCCCAATTTTGTCTTTT 57.200 33.333 0.00 0.00 37.25 2.27
3198 4278 5.692115 ACAGACCCCAATTTTGTCTTTTT 57.308 34.783 0.00 0.00 37.25 1.94
3220 4300 2.212869 CAGAGAGCTGCTCAGATGTC 57.787 55.000 29.49 18.09 46.45 3.06
3221 4301 1.752498 CAGAGAGCTGCTCAGATGTCT 59.248 52.381 29.49 19.90 46.45 3.41
3222 4302 2.950975 CAGAGAGCTGCTCAGATGTCTA 59.049 50.000 29.49 0.00 44.18 2.59
3223 4303 3.380954 CAGAGAGCTGCTCAGATGTCTAA 59.619 47.826 29.49 0.00 44.18 2.10
3224 4304 4.022603 AGAGAGCTGCTCAGATGTCTAAA 58.977 43.478 29.49 0.00 44.17 1.85
3225 4305 4.650588 AGAGAGCTGCTCAGATGTCTAAAT 59.349 41.667 29.49 5.90 44.17 1.40
3226 4306 4.695396 AGAGCTGCTCAGATGTCTAAATG 58.305 43.478 29.49 0.00 32.06 2.32
3227 4307 4.405036 AGAGCTGCTCAGATGTCTAAATGA 59.595 41.667 29.49 0.00 32.06 2.57
3228 4308 4.695396 AGCTGCTCAGATGTCTAAATGAG 58.305 43.478 0.00 0.00 41.68 2.90
3229 4309 4.161942 AGCTGCTCAGATGTCTAAATGAGT 59.838 41.667 0.00 0.00 41.00 3.41
3230 4310 4.874966 GCTGCTCAGATGTCTAAATGAGTT 59.125 41.667 0.29 0.00 41.00 3.01
3231 4311 5.220624 GCTGCTCAGATGTCTAAATGAGTTG 60.221 44.000 0.29 0.00 41.00 3.16
3232 4312 6.041423 TGCTCAGATGTCTAAATGAGTTGA 57.959 37.500 3.30 0.00 41.00 3.18
3233 4313 6.466812 TGCTCAGATGTCTAAATGAGTTGAA 58.533 36.000 3.30 0.00 41.00 2.69
3234 4314 6.936335 TGCTCAGATGTCTAAATGAGTTGAAA 59.064 34.615 3.30 0.00 41.00 2.69
3235 4315 7.609146 TGCTCAGATGTCTAAATGAGTTGAAAT 59.391 33.333 3.30 0.00 41.00 2.17
3236 4316 8.457261 GCTCAGATGTCTAAATGAGTTGAAATT 58.543 33.333 3.30 0.00 41.00 1.82
3239 4319 9.270576 CAGATGTCTAAATGAGTTGAAATTTCG 57.729 33.333 13.34 0.00 0.00 3.46
3240 4320 9.003658 AGATGTCTAAATGAGTTGAAATTTCGT 57.996 29.630 13.34 0.67 0.00 3.85
3241 4321 8.955061 ATGTCTAAATGAGTTGAAATTTCGTG 57.045 30.769 13.34 0.00 0.00 4.35
3242 4322 6.855914 TGTCTAAATGAGTTGAAATTTCGTGC 59.144 34.615 13.34 6.10 0.00 5.34
3243 4323 6.855914 GTCTAAATGAGTTGAAATTTCGTGCA 59.144 34.615 13.34 9.00 0.00 4.57
3244 4324 7.059945 GTCTAAATGAGTTGAAATTTCGTGCAG 59.940 37.037 13.34 1.95 0.00 4.41
3245 4325 5.437289 AATGAGTTGAAATTTCGTGCAGA 57.563 34.783 13.34 0.00 0.00 4.26
3246 4326 4.209452 TGAGTTGAAATTTCGTGCAGAC 57.791 40.909 13.34 5.42 0.00 3.51
3247 4327 3.003275 TGAGTTGAAATTTCGTGCAGACC 59.997 43.478 13.34 0.00 0.00 3.85
3248 4328 3.214328 AGTTGAAATTTCGTGCAGACCT 58.786 40.909 13.34 0.00 0.00 3.85
3249 4329 3.251004 AGTTGAAATTTCGTGCAGACCTC 59.749 43.478 13.34 0.00 0.00 3.85
3250 4330 2.844946 TGAAATTTCGTGCAGACCTCA 58.155 42.857 13.34 0.00 0.00 3.86
3251 4331 2.548057 TGAAATTTCGTGCAGACCTCAC 59.452 45.455 13.34 0.00 0.00 3.51
3252 4332 2.254546 AATTTCGTGCAGACCTCACA 57.745 45.000 0.00 0.00 34.27 3.58
3253 4333 1.512926 ATTTCGTGCAGACCTCACAC 58.487 50.000 0.00 0.00 34.27 3.82
3254 4334 0.176910 TTTCGTGCAGACCTCACACA 59.823 50.000 0.00 0.00 33.89 3.72
3255 4335 0.392706 TTCGTGCAGACCTCACACAT 59.607 50.000 0.00 0.00 33.89 3.21
3256 4336 0.038251 TCGTGCAGACCTCACACATC 60.038 55.000 0.00 0.00 33.89 3.06
3257 4337 0.319813 CGTGCAGACCTCACACATCA 60.320 55.000 0.00 0.00 33.89 3.07
3258 4338 1.873486 CGTGCAGACCTCACACATCAA 60.873 52.381 0.00 0.00 33.89 2.57
3259 4339 2.221169 GTGCAGACCTCACACATCAAA 58.779 47.619 0.00 0.00 34.43 2.69
3260 4340 2.816087 GTGCAGACCTCACACATCAAAT 59.184 45.455 0.00 0.00 34.43 2.32
3261 4341 3.254166 GTGCAGACCTCACACATCAAATT 59.746 43.478 0.00 0.00 34.43 1.82
3262 4342 4.455533 GTGCAGACCTCACACATCAAATTA 59.544 41.667 0.00 0.00 34.43 1.40
3263 4343 5.124457 GTGCAGACCTCACACATCAAATTAT 59.876 40.000 0.00 0.00 34.43 1.28
3264 4344 5.355071 TGCAGACCTCACACATCAAATTATC 59.645 40.000 0.00 0.00 0.00 1.75
3265 4345 5.587844 GCAGACCTCACACATCAAATTATCT 59.412 40.000 0.00 0.00 0.00 1.98
3266 4346 6.763135 GCAGACCTCACACATCAAATTATCTA 59.237 38.462 0.00 0.00 0.00 1.98
3267 4347 7.443575 GCAGACCTCACACATCAAATTATCTAT 59.556 37.037 0.00 0.00 0.00 1.98
3268 4348 8.986847 CAGACCTCACACATCAAATTATCTATC 58.013 37.037 0.00 0.00 0.00 2.08
3269 4349 8.708378 AGACCTCACACATCAAATTATCTATCA 58.292 33.333 0.00 0.00 0.00 2.15
3270 4350 9.499479 GACCTCACACATCAAATTATCTATCAT 57.501 33.333 0.00 0.00 0.00 2.45
3271 4351 9.499479 ACCTCACACATCAAATTATCTATCATC 57.501 33.333 0.00 0.00 0.00 2.92
3272 4352 8.944029 CCTCACACATCAAATTATCTATCATCC 58.056 37.037 0.00 0.00 0.00 3.51
3273 4353 9.498176 CTCACACATCAAATTATCTATCATCCA 57.502 33.333 0.00 0.00 0.00 3.41
3274 4354 9.850198 TCACACATCAAATTATCTATCATCCAA 57.150 29.630 0.00 0.00 0.00 3.53
3343 4423 2.166907 TTTTTGAAAGGGGGTGCAGA 57.833 45.000 0.00 0.00 0.00 4.26
3344 4424 2.397044 TTTTGAAAGGGGGTGCAGAT 57.603 45.000 0.00 0.00 0.00 2.90
3345 4425 1.631405 TTTGAAAGGGGGTGCAGATG 58.369 50.000 0.00 0.00 0.00 2.90
3346 4426 0.776810 TTGAAAGGGGGTGCAGATGA 59.223 50.000 0.00 0.00 0.00 2.92
3347 4427 0.329261 TGAAAGGGGGTGCAGATGAG 59.671 55.000 0.00 0.00 0.00 2.90
3348 4428 1.000396 AAAGGGGGTGCAGATGAGC 60.000 57.895 0.00 0.00 0.00 4.26
3349 4429 2.505364 AAAGGGGGTGCAGATGAGCC 62.505 60.000 0.00 0.00 0.00 4.70
3350 4430 3.415087 GGGGGTGCAGATGAGCCT 61.415 66.667 0.00 0.00 0.00 4.58
3351 4431 2.124403 GGGGTGCAGATGAGCCTG 60.124 66.667 0.00 0.00 37.23 4.85
3352 4432 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
3353 4433 2.673200 GGGTGCAGATGAGCCTGGA 61.673 63.158 0.00 0.00 34.82 3.86
3354 4434 1.300963 GGTGCAGATGAGCCTGGAA 59.699 57.895 0.00 0.00 36.28 3.53
3355 4435 0.747283 GGTGCAGATGAGCCTGGAAG 60.747 60.000 0.00 0.00 36.28 3.46
3356 4436 1.077930 TGCAGATGAGCCTGGAAGC 60.078 57.895 0.00 0.00 34.82 3.86
3357 4437 1.077930 GCAGATGAGCCTGGAAGCA 60.078 57.895 0.00 0.00 34.82 3.91
3358 4438 1.096386 GCAGATGAGCCTGGAAGCAG 61.096 60.000 0.00 0.00 34.82 4.24
3359 4439 0.540454 CAGATGAGCCTGGAAGCAGA 59.460 55.000 0.00 0.00 34.23 4.26
3360 4440 1.065636 CAGATGAGCCTGGAAGCAGAA 60.066 52.381 0.00 0.00 34.23 3.02
3361 4441 1.632409 AGATGAGCCTGGAAGCAGAAA 59.368 47.619 0.00 0.00 34.23 2.52
3362 4442 1.742268 GATGAGCCTGGAAGCAGAAAC 59.258 52.381 0.00 0.00 34.23 2.78
3363 4443 0.767375 TGAGCCTGGAAGCAGAAACT 59.233 50.000 0.00 0.00 34.23 2.66
3364 4444 1.271054 TGAGCCTGGAAGCAGAAACTC 60.271 52.381 0.00 0.00 34.23 3.01
3365 4445 0.037447 AGCCTGGAAGCAGAAACTCC 59.963 55.000 0.00 0.00 34.23 3.85
3366 4446 1.301677 GCCTGGAAGCAGAAACTCCG 61.302 60.000 0.00 0.00 0.00 4.63
3367 4447 1.301677 CCTGGAAGCAGAAACTCCGC 61.302 60.000 0.00 0.00 0.00 5.54
3368 4448 0.603707 CTGGAAGCAGAAACTCCGCA 60.604 55.000 0.00 0.00 0.00 5.69
3369 4449 0.036732 TGGAAGCAGAAACTCCGCAT 59.963 50.000 0.00 0.00 0.00 4.73
3370 4450 0.729690 GGAAGCAGAAACTCCGCATC 59.270 55.000 0.00 0.00 0.00 3.91
3371 4451 0.729690 GAAGCAGAAACTCCGCATCC 59.270 55.000 0.00 0.00 0.00 3.51
3372 4452 1.021390 AAGCAGAAACTCCGCATCCG 61.021 55.000 0.00 0.00 0.00 4.18
3385 4465 2.550978 CGCATCCGGATGTAATATCCC 58.449 52.381 37.88 21.45 40.80 3.85
3386 4466 2.168521 CGCATCCGGATGTAATATCCCT 59.831 50.000 37.88 2.92 40.80 4.20
3387 4467 3.383505 CGCATCCGGATGTAATATCCCTA 59.616 47.826 37.88 0.00 40.80 3.53
3388 4468 4.039245 CGCATCCGGATGTAATATCCCTAT 59.961 45.833 37.88 2.21 40.80 2.57
3389 4469 5.542779 GCATCCGGATGTAATATCCCTATC 58.457 45.833 37.88 17.76 40.80 2.08
3390 4470 5.511545 GCATCCGGATGTAATATCCCTATCC 60.512 48.000 37.88 17.37 40.80 2.59
3391 4471 4.553678 TCCGGATGTAATATCCCTATCCC 58.446 47.826 0.00 0.00 35.07 3.85
3392 4472 3.646637 CCGGATGTAATATCCCTATCCCC 59.353 52.174 0.00 0.00 35.07 4.81
3421 4501 4.191804 AGTGCATCCTAGAGTATGGACT 57.808 45.455 15.91 15.91 46.16 3.85
3451 4531 1.271102 TCCAATTTTTGTAGGCCACGC 59.729 47.619 5.01 0.00 0.00 5.34
3479 4559 8.027189 TGGATTATCGTATTTCCTTCAGATACG 58.973 37.037 8.38 8.38 45.92 3.06
3480 4560 8.027771 GGATTATCGTATTTCCTTCAGATACGT 58.972 37.037 12.88 0.00 45.21 3.57
3508 4588 2.543777 AATACACACTCCTGCACGTT 57.456 45.000 0.00 0.00 0.00 3.99
3512 4592 1.343142 ACACACTCCTGCACGTTATCA 59.657 47.619 0.00 0.00 0.00 2.15
3519 4599 1.330521 CCTGCACGTTATCATTTCCGG 59.669 52.381 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.821366 GTCACGGGCTGCCATCTG 60.821 66.667 22.05 11.74 0.00 2.90
17 18 3.032017 ACATTCAGTCTCCTTGTCACG 57.968 47.619 0.00 0.00 0.00 4.35
100 101 5.728637 ATGGGTGATTTGTTTTCTCTTCC 57.271 39.130 0.00 0.00 0.00 3.46
188 1253 0.468400 TGTGGGGCCCAAAAGTGTAC 60.468 55.000 30.70 13.14 34.18 2.90
204 1269 4.363999 TCGTTTTGCCACCTAATTTTGTG 58.636 39.130 1.18 1.18 0.00 3.33
435 1501 2.794282 GCACATGTTTTTCACAGCACGA 60.794 45.455 0.00 0.00 39.40 4.35
529 1596 5.119694 GCTAAGATTAGGACTTGAACCCAG 58.880 45.833 2.00 0.00 0.00 4.45
530 1597 4.534500 TGCTAAGATTAGGACTTGAACCCA 59.466 41.667 2.00 0.00 0.00 4.51
1033 2107 7.976826 TCATATTGTTTGGTGGTATCGTTTAC 58.023 34.615 0.00 0.00 0.00 2.01
1091 2165 4.165779 GTGTTGGCAGTGCAATTGTATAC 58.834 43.478 18.61 0.00 0.00 1.47
1209 2283 4.327357 CCAGTAACGCTATGACAAGAAGTG 59.673 45.833 0.00 0.00 0.00 3.16
1224 2298 5.250235 AGTAGATGTGATGACCAGTAACG 57.750 43.478 0.00 0.00 0.00 3.18
1305 2379 8.197439 CCTTTGTGATTCTTAAGTTGGAGTTTT 58.803 33.333 1.63 0.00 0.00 2.43
1346 2420 3.056536 AGCAAAGAAGAGAGACGTGCATA 60.057 43.478 0.00 0.00 0.00 3.14
1486 2563 0.590195 CCAACTCTGCTTCACTGCAC 59.410 55.000 0.00 0.00 38.12 4.57
1487 2564 0.181114 ACCAACTCTGCTTCACTGCA 59.819 50.000 0.00 0.00 41.05 4.41
1658 2735 2.104451 CCATCCCAGAGAGGTTGATGAG 59.896 54.545 0.00 0.00 37.93 2.90
1837 2914 3.274288 CAACTTTGCCACTCCTCCTATC 58.726 50.000 0.00 0.00 0.00 2.08
1864 2941 2.028020 CCGAGCCTTTGACCTAGAAGTT 60.028 50.000 0.00 0.00 0.00 2.66
1993 3070 5.827797 TCCAGCAACAACAGTAAGATCTTTT 59.172 36.000 14.36 0.00 0.00 2.27
2018 3095 4.594123 TGATATTGGCCTTCAATGCATG 57.406 40.909 3.32 0.00 45.00 4.06
2321 3398 7.765695 TTTTCTTCATCTGTCCTTTAGCATT 57.234 32.000 0.00 0.00 0.00 3.56
2509 3586 7.290248 CCCTCCTCCTGATAGTAGATTACAAAA 59.710 40.741 0.00 0.00 0.00 2.44
2511 3588 6.104243 TCCCTCCTCCTGATAGTAGATTACAA 59.896 42.308 0.00 0.00 0.00 2.41
2550 3627 5.324409 TCCAAGAGATGTGCCTGTTATTTT 58.676 37.500 0.00 0.00 0.00 1.82
2587 3665 2.501667 TCCCCCATCTCATCATCCAAA 58.498 47.619 0.00 0.00 0.00 3.28
2588 3666 2.211141 TCCCCCATCTCATCATCCAA 57.789 50.000 0.00 0.00 0.00 3.53
2589 3667 2.445806 ATCCCCCATCTCATCATCCA 57.554 50.000 0.00 0.00 0.00 3.41
2596 3674 1.500303 CCAATGGAATCCCCCATCTCA 59.500 52.381 0.00 0.00 45.69 3.27
2756 3836 4.461081 ACCAAATTGAAGTGCGGCTATTTA 59.539 37.500 0.00 0.00 0.00 1.40
2812 3892 6.090898 CCCAAGAATACAAGTTGTAGAAGTCG 59.909 42.308 19.87 7.71 36.14 4.18
2825 3905 6.423182 CAAACCCTATCTCCCAAGAATACAA 58.577 40.000 0.00 0.00 34.49 2.41
2863 3943 4.113354 GTTTAGTCTGCTCGTCCCATAAG 58.887 47.826 0.00 0.00 0.00 1.73
2864 3944 3.767673 AGTTTAGTCTGCTCGTCCCATAA 59.232 43.478 0.00 0.00 0.00 1.90
2865 3945 3.362706 AGTTTAGTCTGCTCGTCCCATA 58.637 45.455 0.00 0.00 0.00 2.74
2867 3947 1.544691 GAGTTTAGTCTGCTCGTCCCA 59.455 52.381 0.00 0.00 0.00 4.37
2868 3948 1.544691 TGAGTTTAGTCTGCTCGTCCC 59.455 52.381 0.00 0.00 32.32 4.46
2869 3949 2.488545 TCTGAGTTTAGTCTGCTCGTCC 59.511 50.000 0.00 0.00 32.32 4.79
2870 3950 3.437395 TCTCTGAGTTTAGTCTGCTCGTC 59.563 47.826 4.32 0.00 32.32 4.20
2871 3951 3.413327 TCTCTGAGTTTAGTCTGCTCGT 58.587 45.455 4.32 0.00 32.32 4.18
2872 3952 3.181501 CCTCTCTGAGTTTAGTCTGCTCG 60.182 52.174 4.32 0.00 32.32 5.03
2873 3953 4.013728 TCCTCTCTGAGTTTAGTCTGCTC 58.986 47.826 4.32 0.00 0.00 4.26
2965 4045 1.644786 GGCACCGACTTGGATTTCCG 61.645 60.000 0.00 0.00 42.00 4.30
2966 4046 1.313091 GGGCACCGACTTGGATTTCC 61.313 60.000 0.00 0.00 40.86 3.13
2967 4047 2.180674 GGGCACCGACTTGGATTTC 58.819 57.895 0.00 0.00 40.86 2.17
2968 4048 4.415783 GGGCACCGACTTGGATTT 57.584 55.556 0.00 0.00 40.86 2.17
2980 4060 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
2981 4061 3.013327 AGCAGATGAGCCTGGGCA 61.013 61.111 14.39 0.00 44.88 5.36
2982 4062 2.203181 GAGCAGATGAGCCTGGGC 60.203 66.667 3.00 3.00 42.33 5.36
2983 4063 2.509916 GGAGCAGATGAGCCTGGG 59.490 66.667 0.00 0.00 34.82 4.45
2984 4064 2.509916 GGGAGCAGATGAGCCTGG 59.490 66.667 0.00 0.00 34.82 4.45
2985 4065 2.108566 CGGGAGCAGATGAGCCTG 59.891 66.667 0.00 0.00 37.23 4.85
3050 4130 8.402472 CGCATCAAATTATCTACCACCTAAAAA 58.598 33.333 0.00 0.00 0.00 1.94
3051 4131 7.554835 ACGCATCAAATTATCTACCACCTAAAA 59.445 33.333 0.00 0.00 0.00 1.52
3052 4132 7.011950 CACGCATCAAATTATCTACCACCTAAA 59.988 37.037 0.00 0.00 0.00 1.85
3053 4133 6.481976 CACGCATCAAATTATCTACCACCTAA 59.518 38.462 0.00 0.00 0.00 2.69
3054 4134 5.989168 CACGCATCAAATTATCTACCACCTA 59.011 40.000 0.00 0.00 0.00 3.08
3055 4135 4.816385 CACGCATCAAATTATCTACCACCT 59.184 41.667 0.00 0.00 0.00 4.00
3056 4136 4.814234 TCACGCATCAAATTATCTACCACC 59.186 41.667 0.00 0.00 0.00 4.61
3057 4137 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
3058 4138 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
3059 4139 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
3060 4140 5.177696 GGACCTCACGCATCAAATTATCTAC 59.822 44.000 0.00 0.00 0.00 2.59
3061 4141 5.163353 TGGACCTCACGCATCAAATTATCTA 60.163 40.000 0.00 0.00 0.00 1.98
3062 4142 4.130118 GGACCTCACGCATCAAATTATCT 58.870 43.478 0.00 0.00 0.00 1.98
3063 4143 3.876914 TGGACCTCACGCATCAAATTATC 59.123 43.478 0.00 0.00 0.00 1.75
3064 4144 3.627577 GTGGACCTCACGCATCAAATTAT 59.372 43.478 0.00 0.00 36.56 1.28
3065 4145 3.006940 GTGGACCTCACGCATCAAATTA 58.993 45.455 0.00 0.00 36.56 1.40
3066 4146 1.812571 GTGGACCTCACGCATCAAATT 59.187 47.619 0.00 0.00 36.56 1.82
3067 4147 1.453155 GTGGACCTCACGCATCAAAT 58.547 50.000 0.00 0.00 36.56 2.32
3068 4148 2.927004 GTGGACCTCACGCATCAAA 58.073 52.632 0.00 0.00 36.56 2.69
3069 4149 4.693532 GTGGACCTCACGCATCAA 57.306 55.556 0.00 0.00 36.56 2.57
3076 4156 2.955660 TGAAATTTGGTGTGGACCTCAC 59.044 45.455 16.78 16.78 43.58 3.51
3077 4157 3.304911 TGAAATTTGGTGTGGACCTCA 57.695 42.857 0.00 0.00 43.58 3.86
3078 4158 3.243737 GGTTGAAATTTGGTGTGGACCTC 60.244 47.826 0.00 0.00 43.58 3.85
3079 4159 2.698274 GGTTGAAATTTGGTGTGGACCT 59.302 45.455 0.00 0.00 43.58 3.85
3080 4160 2.224185 GGGTTGAAATTTGGTGTGGACC 60.224 50.000 0.00 0.00 43.48 4.46
3081 4161 2.432510 TGGGTTGAAATTTGGTGTGGAC 59.567 45.455 0.00 0.00 0.00 4.02
3082 4162 2.752030 TGGGTTGAAATTTGGTGTGGA 58.248 42.857 0.00 0.00 0.00 4.02
3083 4163 3.767902 ATGGGTTGAAATTTGGTGTGG 57.232 42.857 0.00 0.00 0.00 4.17
3084 4164 5.421212 CAAATGGGTTGAAATTTGGTGTG 57.579 39.130 0.00 0.00 39.87 3.82
3089 4169 6.232692 AGATGTCCAAATGGGTTGAAATTTG 58.767 36.000 0.00 0.00 41.41 2.32
3090 4170 6.438186 AGATGTCCAAATGGGTTGAAATTT 57.562 33.333 0.00 0.00 39.87 1.82
3091 4171 7.552050 TTAGATGTCCAAATGGGTTGAAATT 57.448 32.000 0.00 0.00 39.87 1.82
3092 4172 6.351286 GCTTAGATGTCCAAATGGGTTGAAAT 60.351 38.462 0.00 0.00 39.87 2.17
3093 4173 5.047377 GCTTAGATGTCCAAATGGGTTGAAA 60.047 40.000 0.00 0.00 39.87 2.69
3094 4174 4.462483 GCTTAGATGTCCAAATGGGTTGAA 59.538 41.667 0.00 0.00 39.87 2.69
3095 4175 4.016444 GCTTAGATGTCCAAATGGGTTGA 58.984 43.478 0.00 0.00 39.87 3.18
3096 4176 3.763360 TGCTTAGATGTCCAAATGGGTTG 59.237 43.478 0.00 0.00 38.11 3.77
3097 4177 4.019174 CTGCTTAGATGTCCAAATGGGTT 58.981 43.478 0.00 0.00 38.11 4.11
3098 4178 3.624777 CTGCTTAGATGTCCAAATGGGT 58.375 45.455 0.00 0.00 38.11 4.51
3099 4179 2.360165 GCTGCTTAGATGTCCAAATGGG 59.640 50.000 0.00 0.00 35.41 4.00
3100 4180 3.285484 AGCTGCTTAGATGTCCAAATGG 58.715 45.455 0.00 0.00 0.00 3.16
3101 4181 4.197750 AGAGCTGCTTAGATGTCCAAATG 58.802 43.478 2.53 0.00 0.00 2.32
3102 4182 4.450053 GAGAGCTGCTTAGATGTCCAAAT 58.550 43.478 2.53 0.00 0.00 2.32
3103 4183 3.677148 CGAGAGCTGCTTAGATGTCCAAA 60.677 47.826 2.53 0.00 0.00 3.28
3104 4184 2.159184 CGAGAGCTGCTTAGATGTCCAA 60.159 50.000 2.53 0.00 0.00 3.53
3105 4185 1.406898 CGAGAGCTGCTTAGATGTCCA 59.593 52.381 2.53 0.00 0.00 4.02
3106 4186 1.269517 CCGAGAGCTGCTTAGATGTCC 60.270 57.143 2.53 0.00 0.00 4.02
3107 4187 1.867698 GCCGAGAGCTGCTTAGATGTC 60.868 57.143 2.53 0.00 38.99 3.06
3108 4188 0.103937 GCCGAGAGCTGCTTAGATGT 59.896 55.000 2.53 0.00 38.99 3.06
3109 4189 0.103755 TGCCGAGAGCTGCTTAGATG 59.896 55.000 2.53 0.00 44.23 2.90
3110 4190 0.826715 TTGCCGAGAGCTGCTTAGAT 59.173 50.000 2.53 0.00 44.23 1.98
3111 4191 0.608130 TTTGCCGAGAGCTGCTTAGA 59.392 50.000 2.53 0.00 44.23 2.10
3112 4192 1.442769 TTTTGCCGAGAGCTGCTTAG 58.557 50.000 2.53 0.00 44.23 2.18
3113 4193 1.890876 TTTTTGCCGAGAGCTGCTTA 58.109 45.000 2.53 0.00 44.23 3.09
3114 4194 2.719376 TTTTTGCCGAGAGCTGCTT 58.281 47.368 2.53 0.00 44.23 3.91
3115 4195 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
3129 4209 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
3130 4210 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
3131 4211 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
3132 4212 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
3133 4213 3.315191 CACTGTTTTGACCCGATTTGTCT 59.685 43.478 0.00 0.00 33.83 3.41
3134 4214 3.628017 CACTGTTTTGACCCGATTTGTC 58.372 45.455 0.00 0.00 0.00 3.18
3135 4215 2.223711 GCACTGTTTTGACCCGATTTGT 60.224 45.455 0.00 0.00 0.00 2.83
3136 4216 2.393764 GCACTGTTTTGACCCGATTTG 58.606 47.619 0.00 0.00 0.00 2.32
3137 4217 1.001815 CGCACTGTTTTGACCCGATTT 60.002 47.619 0.00 0.00 0.00 2.17
3138 4218 0.591170 CGCACTGTTTTGACCCGATT 59.409 50.000 0.00 0.00 0.00 3.34
3139 4219 0.534203 ACGCACTGTTTTGACCCGAT 60.534 50.000 0.00 0.00 0.00 4.18
3140 4220 1.153329 ACGCACTGTTTTGACCCGA 60.153 52.632 0.00 0.00 0.00 5.14
3141 4221 1.010125 CACGCACTGTTTTGACCCG 60.010 57.895 0.00 0.00 0.00 5.28
3142 4222 0.736053 TTCACGCACTGTTTTGACCC 59.264 50.000 0.00 0.00 0.00 4.46
3143 4223 1.131504 TGTTCACGCACTGTTTTGACC 59.868 47.619 0.00 0.00 0.00 4.02
3144 4224 2.159572 ACTGTTCACGCACTGTTTTGAC 60.160 45.455 0.00 0.00 0.00 3.18
3145 4225 2.080693 ACTGTTCACGCACTGTTTTGA 58.919 42.857 0.00 0.00 0.00 2.69
3146 4226 2.542766 ACTGTTCACGCACTGTTTTG 57.457 45.000 0.00 0.00 0.00 2.44
3147 4227 4.083217 TGTTTACTGTTCACGCACTGTTTT 60.083 37.500 0.00 0.00 31.81 2.43
3148 4228 3.437395 TGTTTACTGTTCACGCACTGTTT 59.563 39.130 0.00 0.00 31.81 2.83
3149 4229 3.004171 TGTTTACTGTTCACGCACTGTT 58.996 40.909 0.00 0.00 31.81 3.16
3150 4230 2.623535 TGTTTACTGTTCACGCACTGT 58.376 42.857 0.00 0.00 33.75 3.55
3151 4231 3.878086 ATGTTTACTGTTCACGCACTG 57.122 42.857 0.00 0.00 0.00 3.66
3152 4232 4.893424 AAATGTTTACTGTTCACGCACT 57.107 36.364 0.00 0.00 0.00 4.40
3153 4233 5.942325 AAAAATGTTTACTGTTCACGCAC 57.058 34.783 0.00 0.00 0.00 5.34
3154 4234 6.552629 TGTAAAAATGTTTACTGTTCACGCA 58.447 32.000 17.45 0.00 46.29 5.24
3155 4235 6.908284 TCTGTAAAAATGTTTACTGTTCACGC 59.092 34.615 17.45 0.00 46.29 5.34
3156 4236 7.375017 GGTCTGTAAAAATGTTTACTGTTCACG 59.625 37.037 17.45 0.00 46.29 4.35
3157 4237 7.646526 GGGTCTGTAAAAATGTTTACTGTTCAC 59.353 37.037 17.45 11.56 46.29 3.18
3158 4238 7.201839 GGGGTCTGTAAAAATGTTTACTGTTCA 60.202 37.037 17.45 1.80 46.29 3.18
3159 4239 7.143340 GGGGTCTGTAAAAATGTTTACTGTTC 58.857 38.462 17.45 13.68 46.29 3.18
3160 4240 6.608002 TGGGGTCTGTAAAAATGTTTACTGTT 59.392 34.615 17.45 0.00 46.29 3.16
3161 4241 6.130569 TGGGGTCTGTAAAAATGTTTACTGT 58.869 36.000 17.45 0.00 46.29 3.55
3162 4242 6.642707 TGGGGTCTGTAAAAATGTTTACTG 57.357 37.500 17.45 16.56 46.29 2.74
3163 4243 7.849322 ATTGGGGTCTGTAAAAATGTTTACT 57.151 32.000 17.45 0.00 46.29 2.24
3164 4244 8.896320 AAATTGGGGTCTGTAAAAATGTTTAC 57.104 30.769 11.06 11.06 46.31 2.01
3165 4245 9.331282 CAAAATTGGGGTCTGTAAAAATGTTTA 57.669 29.630 0.00 0.00 0.00 2.01
3166 4246 7.831690 ACAAAATTGGGGTCTGTAAAAATGTTT 59.168 29.630 0.00 0.00 0.00 2.83
3167 4247 7.342581 ACAAAATTGGGGTCTGTAAAAATGTT 58.657 30.769 0.00 0.00 0.00 2.71
3168 4248 6.894682 ACAAAATTGGGGTCTGTAAAAATGT 58.105 32.000 0.00 0.00 0.00 2.71
3169 4249 7.216494 AGACAAAATTGGGGTCTGTAAAAATG 58.784 34.615 6.22 0.00 40.21 2.32
3170 4250 7.373617 AGACAAAATTGGGGTCTGTAAAAAT 57.626 32.000 6.22 0.00 40.21 1.82
3171 4251 6.800072 AGACAAAATTGGGGTCTGTAAAAA 57.200 33.333 6.22 0.00 40.21 1.94
3172 4252 6.800072 AAGACAAAATTGGGGTCTGTAAAA 57.200 33.333 7.45 0.00 40.80 1.52
3173 4253 6.800072 AAAGACAAAATTGGGGTCTGTAAA 57.200 33.333 7.45 0.00 40.80 2.01
3174 4254 6.800072 AAAAGACAAAATTGGGGTCTGTAA 57.200 33.333 7.45 0.00 40.80 2.41
3175 4255 6.800072 AAAAAGACAAAATTGGGGTCTGTA 57.200 33.333 7.45 0.00 40.80 2.74
3176 4256 5.692115 AAAAAGACAAAATTGGGGTCTGT 57.308 34.783 7.45 0.83 40.80 3.41
3201 4281 1.752498 AGACATCTGAGCAGCTCTCTG 59.248 52.381 23.15 17.99 42.38 3.35
3202 4282 2.148446 AGACATCTGAGCAGCTCTCT 57.852 50.000 23.15 13.87 42.38 3.10
3203 4283 4.383850 TTTAGACATCTGAGCAGCTCTC 57.616 45.455 23.15 11.79 42.23 3.20
3204 4284 4.405036 TCATTTAGACATCTGAGCAGCTCT 59.595 41.667 23.15 2.04 0.00 4.09
3205 4285 4.691175 TCATTTAGACATCTGAGCAGCTC 58.309 43.478 16.21 16.21 0.00 4.09
3206 4286 4.161942 ACTCATTTAGACATCTGAGCAGCT 59.838 41.667 0.00 0.00 38.94 4.24
3207 4287 4.440880 ACTCATTTAGACATCTGAGCAGC 58.559 43.478 0.00 0.00 38.94 5.25
3208 4288 6.104665 TCAACTCATTTAGACATCTGAGCAG 58.895 40.000 0.00 0.00 38.94 4.24
3209 4289 6.041423 TCAACTCATTTAGACATCTGAGCA 57.959 37.500 0.00 0.00 38.94 4.26
3210 4290 6.974932 TTCAACTCATTTAGACATCTGAGC 57.025 37.500 0.00 0.00 38.94 4.26
3213 4293 9.270576 CGAAATTTCAACTCATTTAGACATCTG 57.729 33.333 17.99 0.00 0.00 2.90
3214 4294 9.003658 ACGAAATTTCAACTCATTTAGACATCT 57.996 29.630 17.99 0.00 0.00 2.90
3215 4295 9.055248 CACGAAATTTCAACTCATTTAGACATC 57.945 33.333 17.99 0.00 0.00 3.06
3216 4296 7.538678 GCACGAAATTTCAACTCATTTAGACAT 59.461 33.333 17.99 0.00 0.00 3.06
3217 4297 6.855914 GCACGAAATTTCAACTCATTTAGACA 59.144 34.615 17.99 0.00 0.00 3.41
3218 4298 6.855914 TGCACGAAATTTCAACTCATTTAGAC 59.144 34.615 17.99 0.00 0.00 2.59
3219 4299 6.964908 TGCACGAAATTTCAACTCATTTAGA 58.035 32.000 17.99 0.00 0.00 2.10
3220 4300 7.059945 GTCTGCACGAAATTTCAACTCATTTAG 59.940 37.037 17.99 0.54 0.00 1.85
3221 4301 6.855914 GTCTGCACGAAATTTCAACTCATTTA 59.144 34.615 17.99 0.00 0.00 1.40
3222 4302 5.687285 GTCTGCACGAAATTTCAACTCATTT 59.313 36.000 17.99 0.00 0.00 2.32
3223 4303 5.215160 GTCTGCACGAAATTTCAACTCATT 58.785 37.500 17.99 0.00 0.00 2.57
3224 4304 4.320494 GGTCTGCACGAAATTTCAACTCAT 60.320 41.667 17.99 0.00 0.00 2.90
3225 4305 3.003275 GGTCTGCACGAAATTTCAACTCA 59.997 43.478 17.99 8.63 0.00 3.41
3226 4306 3.251004 AGGTCTGCACGAAATTTCAACTC 59.749 43.478 17.99 4.72 0.00 3.01
3227 4307 3.214328 AGGTCTGCACGAAATTTCAACT 58.786 40.909 17.99 2.55 0.00 3.16
3228 4308 3.003275 TGAGGTCTGCACGAAATTTCAAC 59.997 43.478 17.99 7.01 0.00 3.18
3229 4309 3.003275 GTGAGGTCTGCACGAAATTTCAA 59.997 43.478 17.99 0.08 0.00 2.69
3230 4310 2.548057 GTGAGGTCTGCACGAAATTTCA 59.452 45.455 17.99 0.00 0.00 2.69
3231 4311 2.548057 TGTGAGGTCTGCACGAAATTTC 59.452 45.455 8.20 8.20 39.07 2.17
3232 4312 2.290641 GTGTGAGGTCTGCACGAAATTT 59.709 45.455 0.00 0.00 39.07 1.82
3233 4313 1.873591 GTGTGAGGTCTGCACGAAATT 59.126 47.619 0.00 0.00 39.07 1.82
3234 4314 1.202639 TGTGTGAGGTCTGCACGAAAT 60.203 47.619 0.00 0.00 39.07 2.17
3235 4315 0.176910 TGTGTGAGGTCTGCACGAAA 59.823 50.000 0.00 0.00 39.07 3.46
3236 4316 0.392706 ATGTGTGAGGTCTGCACGAA 59.607 50.000 0.00 0.00 39.07 3.85
3237 4317 0.038251 GATGTGTGAGGTCTGCACGA 60.038 55.000 0.00 0.00 39.07 4.35
3238 4318 0.319813 TGATGTGTGAGGTCTGCACG 60.320 55.000 0.00 0.00 39.07 5.34
3239 4319 1.882912 TTGATGTGTGAGGTCTGCAC 58.117 50.000 0.00 0.00 36.81 4.57
3240 4320 2.636647 TTTGATGTGTGAGGTCTGCA 57.363 45.000 0.00 0.00 0.00 4.41
3241 4321 5.587844 AGATAATTTGATGTGTGAGGTCTGC 59.412 40.000 0.00 0.00 0.00 4.26
3242 4322 8.899427 ATAGATAATTTGATGTGTGAGGTCTG 57.101 34.615 0.00 0.00 0.00 3.51
3243 4323 8.708378 TGATAGATAATTTGATGTGTGAGGTCT 58.292 33.333 0.00 0.00 0.00 3.85
3244 4324 8.893219 TGATAGATAATTTGATGTGTGAGGTC 57.107 34.615 0.00 0.00 0.00 3.85
3245 4325 9.499479 GATGATAGATAATTTGATGTGTGAGGT 57.501 33.333 0.00 0.00 0.00 3.85
3246 4326 8.944029 GGATGATAGATAATTTGATGTGTGAGG 58.056 37.037 0.00 0.00 0.00 3.86
3247 4327 9.498176 TGGATGATAGATAATTTGATGTGTGAG 57.502 33.333 0.00 0.00 0.00 3.51
3248 4328 9.850198 TTGGATGATAGATAATTTGATGTGTGA 57.150 29.630 0.00 0.00 0.00 3.58
3324 4404 2.166907 TCTGCACCCCCTTTCAAAAA 57.833 45.000 0.00 0.00 0.00 1.94
3325 4405 1.969923 CATCTGCACCCCCTTTCAAAA 59.030 47.619 0.00 0.00 0.00 2.44
3326 4406 1.146774 TCATCTGCACCCCCTTTCAAA 59.853 47.619 0.00 0.00 0.00 2.69
3327 4407 0.776810 TCATCTGCACCCCCTTTCAA 59.223 50.000 0.00 0.00 0.00 2.69
3328 4408 0.329261 CTCATCTGCACCCCCTTTCA 59.671 55.000 0.00 0.00 0.00 2.69
3329 4409 1.034292 GCTCATCTGCACCCCCTTTC 61.034 60.000 0.00 0.00 0.00 2.62
3330 4410 1.000396 GCTCATCTGCACCCCCTTT 60.000 57.895 0.00 0.00 0.00 3.11
3331 4411 2.679716 GCTCATCTGCACCCCCTT 59.320 61.111 0.00 0.00 0.00 3.95
3332 4412 3.415087 GGCTCATCTGCACCCCCT 61.415 66.667 0.00 0.00 34.04 4.79
3333 4413 3.415087 AGGCTCATCTGCACCCCC 61.415 66.667 0.00 0.00 34.04 5.40
3334 4414 2.124403 CAGGCTCATCTGCACCCC 60.124 66.667 0.00 0.00 34.04 4.95
3335 4415 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
3336 4416 0.747283 CTTCCAGGCTCATCTGCACC 60.747 60.000 0.00 0.00 33.64 5.01
3337 4417 1.375098 GCTTCCAGGCTCATCTGCAC 61.375 60.000 0.00 0.00 33.64 4.57
3338 4418 1.077930 GCTTCCAGGCTCATCTGCA 60.078 57.895 0.00 0.00 33.64 4.41
3339 4419 1.077930 TGCTTCCAGGCTCATCTGC 60.078 57.895 0.00 0.00 33.64 4.26
3340 4420 0.540454 TCTGCTTCCAGGCTCATCTG 59.460 55.000 0.00 0.00 39.61 2.90
3341 4421 1.283347 TTCTGCTTCCAGGCTCATCT 58.717 50.000 0.00 0.00 39.61 2.90
3342 4422 1.742268 GTTTCTGCTTCCAGGCTCATC 59.258 52.381 0.00 0.00 39.61 2.92
3343 4423 1.353694 AGTTTCTGCTTCCAGGCTCAT 59.646 47.619 0.00 0.00 39.61 2.90
3344 4424 0.767375 AGTTTCTGCTTCCAGGCTCA 59.233 50.000 0.00 0.00 39.61 4.26
3345 4425 1.447945 GAGTTTCTGCTTCCAGGCTC 58.552 55.000 0.00 0.00 39.61 4.70
3346 4426 0.037447 GGAGTTTCTGCTTCCAGGCT 59.963 55.000 0.00 0.00 39.61 4.58
3347 4427 1.301677 CGGAGTTTCTGCTTCCAGGC 61.302 60.000 0.00 0.00 39.61 4.85
3348 4428 1.301677 GCGGAGTTTCTGCTTCCAGG 61.302 60.000 2.71 0.00 45.06 4.45
3349 4429 2.166270 GCGGAGTTTCTGCTTCCAG 58.834 57.895 2.71 0.00 45.06 3.86
3350 4430 4.379174 GCGGAGTTTCTGCTTCCA 57.621 55.556 2.71 0.00 45.06 3.53
3356 4436 0.179073 ATCCGGATGCGGAGTTTCTG 60.179 55.000 32.04 1.48 41.77 3.02
3357 4437 0.179073 CATCCGGATGCGGAGTTTCT 60.179 55.000 32.04 13.71 41.77 2.52
3358 4438 0.462047 ACATCCGGATGCGGAGTTTC 60.462 55.000 38.44 0.00 42.39 2.78
3359 4439 0.828022 TACATCCGGATGCGGAGTTT 59.172 50.000 38.44 22.47 42.39 2.66
3360 4440 0.828022 TTACATCCGGATGCGGAGTT 59.172 50.000 38.44 23.15 42.39 3.01
3361 4441 1.048601 ATTACATCCGGATGCGGAGT 58.951 50.000 38.44 28.01 42.39 3.85
3362 4442 3.448686 GATATTACATCCGGATGCGGAG 58.551 50.000 38.44 24.45 42.39 4.63
3363 4443 2.167693 GGATATTACATCCGGATGCGGA 59.832 50.000 38.44 31.17 42.39 5.54
3364 4444 2.550978 GGATATTACATCCGGATGCGG 58.449 52.381 38.44 21.08 42.39 5.69
3365 4445 2.168521 AGGGATATTACATCCGGATGCG 59.831 50.000 38.44 20.87 42.39 4.73
3366 4446 3.914426 AGGGATATTACATCCGGATGC 57.086 47.619 38.44 23.17 42.39 3.91
3367 4447 5.012148 GGGATAGGGATATTACATCCGGATG 59.988 48.000 37.23 37.23 44.15 3.51
3368 4448 5.155905 GGGATAGGGATATTACATCCGGAT 58.844 45.833 12.38 12.38 39.07 4.18
3369 4449 4.553678 GGGATAGGGATATTACATCCGGA 58.446 47.826 6.61 6.61 39.07 5.14
3370 4450 3.646637 GGGGATAGGGATATTACATCCGG 59.353 52.174 0.00 0.00 39.07 5.14
3371 4451 3.321111 CGGGGATAGGGATATTACATCCG 59.679 52.174 0.00 0.00 39.07 4.18
3372 4452 4.296056 ACGGGGATAGGGATATTACATCC 58.704 47.826 0.00 0.00 37.47 3.51
3373 4453 5.952347 AACGGGGATAGGGATATTACATC 57.048 43.478 0.00 0.00 0.00 3.06
3374 4454 9.510062 TTATAAACGGGGATAGGGATATTACAT 57.490 33.333 0.00 0.00 0.00 2.29
3375 4455 8.914213 TTATAAACGGGGATAGGGATATTACA 57.086 34.615 0.00 0.00 0.00 2.41
3376 4456 8.985922 ACTTATAAACGGGGATAGGGATATTAC 58.014 37.037 0.00 0.00 0.00 1.89
3377 4457 8.984855 CACTTATAAACGGGGATAGGGATATTA 58.015 37.037 0.00 0.00 0.00 0.98
3378 4458 7.582828 GCACTTATAAACGGGGATAGGGATATT 60.583 40.741 0.00 0.00 0.00 1.28
3379 4459 6.126854 GCACTTATAAACGGGGATAGGGATAT 60.127 42.308 0.00 0.00 0.00 1.63
3380 4460 5.188359 GCACTTATAAACGGGGATAGGGATA 59.812 44.000 0.00 0.00 0.00 2.59
3381 4461 4.019591 GCACTTATAAACGGGGATAGGGAT 60.020 45.833 0.00 0.00 0.00 3.85
3382 4462 3.325716 GCACTTATAAACGGGGATAGGGA 59.674 47.826 0.00 0.00 0.00 4.20
3383 4463 3.071892 TGCACTTATAAACGGGGATAGGG 59.928 47.826 0.00 0.00 0.00 3.53
3384 4464 4.345859 TGCACTTATAAACGGGGATAGG 57.654 45.455 0.00 0.00 0.00 2.57
3385 4465 4.935808 GGATGCACTTATAAACGGGGATAG 59.064 45.833 0.00 0.00 0.00 2.08
3386 4466 4.595781 AGGATGCACTTATAAACGGGGATA 59.404 41.667 0.00 0.00 0.00 2.59
3387 4467 3.394606 AGGATGCACTTATAAACGGGGAT 59.605 43.478 0.00 0.00 0.00 3.85
3388 4468 2.775384 AGGATGCACTTATAAACGGGGA 59.225 45.455 0.00 0.00 0.00 4.81
3389 4469 3.208747 AGGATGCACTTATAAACGGGG 57.791 47.619 0.00 0.00 0.00 5.73
3390 4470 5.209818 TCTAGGATGCACTTATAAACGGG 57.790 43.478 0.00 0.00 0.00 5.28
3391 4471 5.844004 ACTCTAGGATGCACTTATAAACGG 58.156 41.667 0.00 0.00 0.00 4.44
3392 4472 7.542477 CCATACTCTAGGATGCACTTATAAACG 59.458 40.741 0.00 0.00 0.00 3.60
3421 4501 6.931840 GCCTACAAAAATTGGAACACCATTTA 59.068 34.615 0.00 0.00 39.29 1.40
3451 4531 8.839310 ATCTGAAGGAAATACGATAATCCAAG 57.161 34.615 0.00 0.00 34.30 3.61
3464 4544 5.587388 TTACGGACGTATCTGAAGGAAAT 57.413 39.130 5.33 0.00 34.98 2.17
3503 4583 0.303493 CGGCCGGAAATGATAACGTG 59.697 55.000 20.10 0.00 0.00 4.49
3519 4599 3.813529 CGGATTAGAATGATTTCCGGC 57.186 47.619 7.88 0.00 44.24 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.