Multiple sequence alignment - TraesCS7D01G102300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G102300 chr7D 100.000 2873 0 0 1 2873 62108184 62105312 0.000000e+00 5306.0
1 TraesCS7D01G102300 chr7D 96.314 2062 62 6 798 2859 62260322 62258275 0.000000e+00 3374.0
2 TraesCS7D01G102300 chr7D 80.165 1336 233 19 800 2106 62280446 62281778 0.000000e+00 970.0
3 TraesCS7D01G102300 chr7D 81.861 1064 187 6 800 1860 60705161 60704101 0.000000e+00 891.0
4 TraesCS7D01G102300 chr7D 80.469 1065 200 8 800 1860 61228508 61227448 0.000000e+00 808.0
5 TraesCS7D01G102300 chr7D 93.075 361 5 1 416 756 62260667 62260307 7.100000e-141 510.0
6 TraesCS7D01G102300 chr7D 91.988 337 19 4 1 336 46954601 46954272 1.560000e-127 466.0
7 TraesCS7D01G102300 chr7D 77.907 258 35 10 519 756 62280204 62280459 1.070000e-29 141.0
8 TraesCS7D01G102300 chr7D 94.000 50 2 1 757 805 615786086 615786135 1.100000e-09 75.0
9 TraesCS7D01G102300 chr7D 94.000 50 2 1 757 805 638295837 638295886 1.100000e-09 75.0
10 TraesCS7D01G102300 chr7A 94.576 1309 69 1 799 2105 65329560 65328252 0.000000e+00 2023.0
11 TraesCS7D01G102300 chr7A 79.866 1341 234 24 800 2111 65442200 65443533 0.000000e+00 948.0
12 TraesCS7D01G102300 chr7A 89.016 610 64 3 2138 2746 65328253 65327646 0.000000e+00 752.0
13 TraesCS7D01G102300 chr7A 90.000 360 16 1 417 756 65329905 65329546 5.650000e-122 448.0
14 TraesCS7D01G102300 chr7A 91.597 119 10 0 2741 2859 65325901 65325783 6.370000e-37 165.0
15 TraesCS7D01G102300 chr7A 83.621 116 18 1 2151 2266 711459156 711459270 1.090000e-19 108.0
16 TraesCS7D01G102300 chr7A 100.000 35 0 0 380 414 652737319 652737285 6.640000e-07 65.8
17 TraesCS7D01G102300 chr7B 82.879 1063 178 4 800 1860 3342134 3341074 0.000000e+00 952.0
18 TraesCS7D01G102300 chr7B 81.091 1063 193 8 802 1860 3540506 3541564 0.000000e+00 843.0
19 TraesCS7D01G102300 chr7B 90.580 276 25 1 1 276 739389012 739388738 5.850000e-97 364.0
20 TraesCS7D01G102300 chr7B 79.683 379 59 11 1 368 61120692 61121063 1.020000e-64 257.0
21 TraesCS7D01G102300 chr7B 100.000 31 0 0 380 410 583373811 583373781 1.110000e-04 58.4
22 TraesCS7D01G102300 chr2D 80.681 1087 202 7 800 1882 601263636 601262554 0.000000e+00 837.0
23 TraesCS7D01G102300 chr2D 78.947 133 25 2 535 667 601273238 601273109 1.420000e-13 87.9
24 TraesCS7D01G102300 chr6B 93.085 376 25 1 1 376 716239709 716239335 1.500000e-152 549.0
25 TraesCS7D01G102300 chr6B 88.618 123 14 0 2172 2294 192934612 192934490 1.780000e-32 150.0
26 TraesCS7D01G102300 chr2B 92.287 376 28 1 1 376 733855078 733855452 1.520000e-147 532.0
27 TraesCS7D01G102300 chr2B 91.722 302 25 0 75 376 733853573 733853874 1.230000e-113 420.0
28 TraesCS7D01G102300 chr2B 91.892 74 6 0 594 667 731536510 731536437 1.410000e-18 104.0
29 TraesCS7D01G102300 chr2B 100.000 43 0 0 757 799 560265307 560265265 2.370000e-11 80.5
30 TraesCS7D01G102300 chr3B 91.223 376 25 2 1 376 154449868 154450235 3.300000e-139 505.0
31 TraesCS7D01G102300 chr3B 100.000 35 0 0 380 414 75686045 75686079 6.640000e-07 65.8
32 TraesCS7D01G102300 chr3B 100.000 35 0 0 380 414 735257707 735257741 6.640000e-07 65.8
33 TraesCS7D01G102300 chr3B 100.000 35 0 0 380 414 766671036 766671070 6.640000e-07 65.8
34 TraesCS7D01G102300 chr3D 97.736 265 6 0 1 265 545905060 545905324 9.380000e-125 457.0
35 TraesCS7D01G102300 chrUn 96.053 228 9 0 149 376 24274544 24274317 3.500000e-99 372.0
36 TraesCS7D01G102300 chrUn 94.853 136 5 2 1 136 364062647 364062780 8.070000e-51 211.0
37 TraesCS7D01G102300 chr2A 82.270 141 22 3 2151 2290 306689249 306689111 5.030000e-23 119.0
38 TraesCS7D01G102300 chr4B 95.833 48 1 1 757 803 570125481 570125434 3.070000e-10 76.8
39 TraesCS7D01G102300 chr4B 97.778 45 0 1 757 801 610758698 610758741 3.070000e-10 76.8
40 TraesCS7D01G102300 chr4B 97.778 45 0 1 757 801 610786799 610786842 3.070000e-10 76.8
41 TraesCS7D01G102300 chr4B 97.143 35 1 0 380 414 476275997 476276031 3.090000e-05 60.2
42 TraesCS7D01G102300 chr3A 97.778 45 0 1 757 801 742351736 742351779 3.070000e-10 76.8
43 TraesCS7D01G102300 chr1B 97.727 44 1 0 757 800 298248818 298248775 3.070000e-10 76.8
44 TraesCS7D01G102300 chr6A 100.000 40 0 0 757 796 600916550 600916511 1.100000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G102300 chr7D 62105312 62108184 2872 True 5306.0 5306 100.00000 1 2873 1 chr7D.!!$R4 2872
1 TraesCS7D01G102300 chr7D 62258275 62260667 2392 True 1942.0 3374 94.69450 416 2859 2 chr7D.!!$R5 2443
2 TraesCS7D01G102300 chr7D 60704101 60705161 1060 True 891.0 891 81.86100 800 1860 1 chr7D.!!$R2 1060
3 TraesCS7D01G102300 chr7D 61227448 61228508 1060 True 808.0 808 80.46900 800 1860 1 chr7D.!!$R3 1060
4 TraesCS7D01G102300 chr7D 62280204 62281778 1574 False 555.5 970 79.03600 519 2106 2 chr7D.!!$F3 1587
5 TraesCS7D01G102300 chr7A 65442200 65443533 1333 False 948.0 948 79.86600 800 2111 1 chr7A.!!$F1 1311
6 TraesCS7D01G102300 chr7A 65325783 65329905 4122 True 847.0 2023 91.29725 417 2859 4 chr7A.!!$R2 2442
7 TraesCS7D01G102300 chr7B 3341074 3342134 1060 True 952.0 952 82.87900 800 1860 1 chr7B.!!$R1 1060
8 TraesCS7D01G102300 chr7B 3540506 3541564 1058 False 843.0 843 81.09100 802 1860 1 chr7B.!!$F1 1058
9 TraesCS7D01G102300 chr2D 601262554 601263636 1082 True 837.0 837 80.68100 800 1882 1 chr2D.!!$R1 1082
10 TraesCS7D01G102300 chr2B 733853573 733855452 1879 False 476.0 532 92.00450 1 376 2 chr2B.!!$F1 375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 390 0.034089 GGTCCCTTGATTGACCCCAG 60.034 60.0 0.0 0.0 44.32 4.45 F
763 784 0.108424 GAGCGATGAGACTGGTTGCT 60.108 55.0 0.0 0.0 35.36 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1686 1.864176 GGTACGCGGAGTTGTTTGG 59.136 57.895 12.47 0.0 0.00 3.28 R
2304 3242 2.229543 TCAAAGCAGCCAAATAGCACAG 59.770 45.455 0.00 0.0 34.23 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.286329 AAAACGTTCACCCCAGTAACT 57.714 42.857 0.00 0.00 0.00 2.24
57 58 4.420522 AAAACGTTCACCCCAGTAACTA 57.579 40.909 0.00 0.00 0.00 2.24
58 59 4.420522 AAACGTTCACCCCAGTAACTAA 57.579 40.909 0.00 0.00 0.00 2.24
59 60 4.628963 AACGTTCACCCCAGTAACTAAT 57.371 40.909 0.00 0.00 0.00 1.73
60 61 4.628963 ACGTTCACCCCAGTAACTAATT 57.371 40.909 0.00 0.00 0.00 1.40
61 62 4.572909 ACGTTCACCCCAGTAACTAATTC 58.427 43.478 0.00 0.00 0.00 2.17
62 63 4.040706 ACGTTCACCCCAGTAACTAATTCA 59.959 41.667 0.00 0.00 0.00 2.57
63 64 4.630069 CGTTCACCCCAGTAACTAATTCAG 59.370 45.833 0.00 0.00 0.00 3.02
64 65 5.568023 CGTTCACCCCAGTAACTAATTCAGA 60.568 44.000 0.00 0.00 0.00 3.27
65 66 6.415573 GTTCACCCCAGTAACTAATTCAGAT 58.584 40.000 0.00 0.00 0.00 2.90
66 67 6.636454 TCACCCCAGTAACTAATTCAGATT 57.364 37.500 0.00 0.00 0.00 2.40
67 68 6.650120 TCACCCCAGTAACTAATTCAGATTC 58.350 40.000 0.00 0.00 0.00 2.52
68 69 5.523916 CACCCCAGTAACTAATTCAGATTCG 59.476 44.000 0.00 0.00 0.00 3.34
69 70 4.511826 CCCCAGTAACTAATTCAGATTCGC 59.488 45.833 0.00 0.00 0.00 4.70
70 71 5.360591 CCCAGTAACTAATTCAGATTCGCT 58.639 41.667 0.00 0.00 0.00 4.93
71 72 6.462487 CCCCAGTAACTAATTCAGATTCGCTA 60.462 42.308 0.00 0.00 0.00 4.26
72 73 6.421202 CCCAGTAACTAATTCAGATTCGCTAC 59.579 42.308 0.00 0.00 0.00 3.58
73 74 6.978659 CCAGTAACTAATTCAGATTCGCTACA 59.021 38.462 0.00 0.00 0.00 2.74
74 75 7.491372 CCAGTAACTAATTCAGATTCGCTACAA 59.509 37.037 0.00 0.00 0.00 2.41
75 76 9.035607 CAGTAACTAATTCAGATTCGCTACAAT 57.964 33.333 0.00 0.00 0.00 2.71
110 111 2.230508 CAGTACTGGTTCCAGTTCGCTA 59.769 50.000 26.22 8.33 43.89 4.26
132 133 6.183360 GCTACAGGATACCGTTTCTGTTTTAC 60.183 42.308 0.00 0.00 40.45 2.01
133 134 5.613329 ACAGGATACCGTTTCTGTTTTACA 58.387 37.500 0.00 0.00 37.18 2.41
134 135 6.235664 ACAGGATACCGTTTCTGTTTTACAT 58.764 36.000 0.00 0.00 37.18 2.29
135 136 6.713450 ACAGGATACCGTTTCTGTTTTACATT 59.287 34.615 0.00 0.00 37.18 2.71
136 137 7.229907 ACAGGATACCGTTTCTGTTTTACATTT 59.770 33.333 0.00 0.00 37.18 2.32
137 138 8.723311 CAGGATACCGTTTCTGTTTTACATTTA 58.277 33.333 0.00 0.00 37.17 1.40
138 139 9.457436 AGGATACCGTTTCTGTTTTACATTTAT 57.543 29.630 0.00 0.00 37.17 1.40
139 140 9.498307 GGATACCGTTTCTGTTTTACATTTATG 57.502 33.333 0.00 0.00 0.00 1.90
140 141 9.498307 GATACCGTTTCTGTTTTACATTTATGG 57.502 33.333 0.00 0.00 0.00 2.74
141 142 7.279750 ACCGTTTCTGTTTTACATTTATGGT 57.720 32.000 0.00 0.00 0.00 3.55
142 143 7.718525 ACCGTTTCTGTTTTACATTTATGGTT 58.281 30.769 0.00 0.00 0.00 3.67
143 144 8.848182 ACCGTTTCTGTTTTACATTTATGGTTA 58.152 29.630 0.00 0.00 0.00 2.85
144 145 9.337091 CCGTTTCTGTTTTACATTTATGGTTAG 57.663 33.333 0.00 0.00 0.00 2.34
145 146 9.337091 CGTTTCTGTTTTACATTTATGGTTAGG 57.663 33.333 0.00 0.00 0.00 2.69
148 149 9.802039 TTCTGTTTTACATTTATGGTTAGGTCT 57.198 29.630 0.00 0.00 0.00 3.85
149 150 9.802039 TCTGTTTTACATTTATGGTTAGGTCTT 57.198 29.630 0.00 0.00 0.00 3.01
155 156 9.969001 TTACATTTATGGTTAGGTCTTTAAGCT 57.031 29.630 0.00 0.00 39.57 3.74
159 160 9.794719 ATTTATGGTTAGGTCTTTAAGCTATCC 57.205 33.333 0.00 5.00 43.61 2.59
161 162 5.985911 TGGTTAGGTCTTTAAGCTATCCAC 58.014 41.667 9.05 0.00 46.00 4.02
162 163 5.724854 TGGTTAGGTCTTTAAGCTATCCACT 59.275 40.000 9.05 0.00 46.00 4.00
163 164 6.049790 GGTTAGGTCTTTAAGCTATCCACTG 58.950 44.000 0.00 0.00 43.15 3.66
164 165 4.143986 AGGTCTTTAAGCTATCCACTGC 57.856 45.455 0.00 0.00 32.74 4.40
165 166 3.777522 AGGTCTTTAAGCTATCCACTGCT 59.222 43.478 0.00 0.00 41.82 4.24
167 168 4.944317 GGTCTTTAAGCTATCCACTGCTTT 59.056 41.667 5.54 0.00 45.91 3.51
168 169 6.070194 AGGTCTTTAAGCTATCCACTGCTTTA 60.070 38.462 5.54 0.00 45.91 1.85
169 170 6.768381 GGTCTTTAAGCTATCCACTGCTTTAT 59.232 38.462 5.54 0.00 45.91 1.40
170 171 7.283354 GGTCTTTAAGCTATCCACTGCTTTATT 59.717 37.037 5.54 0.00 45.91 1.40
171 172 8.678199 GTCTTTAAGCTATCCACTGCTTTATTT 58.322 33.333 5.54 0.00 45.91 1.40
172 173 8.677300 TCTTTAAGCTATCCACTGCTTTATTTG 58.323 33.333 5.54 0.00 45.91 2.32
173 174 8.574251 TTTAAGCTATCCACTGCTTTATTTGA 57.426 30.769 5.54 0.00 45.91 2.69
174 175 6.442513 AAGCTATCCACTGCTTTATTTGAC 57.557 37.500 0.00 0.00 45.91 3.18
175 176 5.500234 AGCTATCCACTGCTTTATTTGACA 58.500 37.500 0.00 0.00 35.86 3.58
176 177 5.945784 AGCTATCCACTGCTTTATTTGACAA 59.054 36.000 0.00 0.00 35.86 3.18
177 178 6.030228 GCTATCCACTGCTTTATTTGACAAC 58.970 40.000 0.00 0.00 0.00 3.32
178 179 6.349280 GCTATCCACTGCTTTATTTGACAACA 60.349 38.462 0.00 0.00 0.00 3.33
179 180 5.437289 TCCACTGCTTTATTTGACAACAG 57.563 39.130 0.00 0.00 0.00 3.16
180 181 3.983344 CCACTGCTTTATTTGACAACAGC 59.017 43.478 2.14 2.24 0.00 4.40
181 182 4.499526 CCACTGCTTTATTTGACAACAGCA 60.500 41.667 9.18 9.18 0.00 4.41
182 183 4.442073 CACTGCTTTATTTGACAACAGCAC 59.558 41.667 6.49 0.00 0.00 4.40
183 184 4.339247 ACTGCTTTATTTGACAACAGCACT 59.661 37.500 6.49 0.00 0.00 4.40
184 185 5.163519 ACTGCTTTATTTGACAACAGCACTT 60.164 36.000 6.49 0.00 0.00 3.16
185 186 5.042593 TGCTTTATTTGACAACAGCACTTG 58.957 37.500 6.49 0.00 0.00 3.16
186 187 5.043248 GCTTTATTTGACAACAGCACTTGT 58.957 37.500 0.00 0.00 43.45 3.16
196 197 3.560636 ACAGCACTTGTTAGTTGGAGT 57.439 42.857 0.00 0.00 36.31 3.85
197 198 3.886123 ACAGCACTTGTTAGTTGGAGTT 58.114 40.909 0.00 0.00 36.31 3.01
198 199 4.270008 ACAGCACTTGTTAGTTGGAGTTT 58.730 39.130 0.00 0.00 36.31 2.66
199 200 4.335594 ACAGCACTTGTTAGTTGGAGTTTC 59.664 41.667 0.00 0.00 36.31 2.78
200 201 4.576463 CAGCACTTGTTAGTTGGAGTTTCT 59.424 41.667 0.00 0.00 30.26 2.52
201 202 5.758296 CAGCACTTGTTAGTTGGAGTTTCTA 59.242 40.000 0.00 0.00 30.26 2.10
202 203 5.758784 AGCACTTGTTAGTTGGAGTTTCTAC 59.241 40.000 0.00 0.00 30.26 2.59
203 204 5.758784 GCACTTGTTAGTTGGAGTTTCTACT 59.241 40.000 0.00 0.00 32.13 2.57
204 205 6.927381 GCACTTGTTAGTTGGAGTTTCTACTA 59.073 38.462 0.00 0.00 30.36 1.82
205 206 7.116519 GCACTTGTTAGTTGGAGTTTCTACTAG 59.883 40.741 0.00 0.00 30.36 2.57
206 207 8.142551 CACTTGTTAGTTGGAGTTTCTACTAGT 58.857 37.037 0.00 0.00 30.36 2.57
207 208 8.142551 ACTTGTTAGTTGGAGTTTCTACTAGTG 58.857 37.037 5.39 0.00 33.84 2.74
208 209 6.453092 TGTTAGTTGGAGTTTCTACTAGTGC 58.547 40.000 5.39 0.00 33.84 4.40
209 210 4.175787 AGTTGGAGTTTCTACTAGTGCG 57.824 45.455 5.39 0.00 33.84 5.34
210 211 3.573110 AGTTGGAGTTTCTACTAGTGCGT 59.427 43.478 5.39 0.00 33.84 5.24
211 212 3.570926 TGGAGTTTCTACTAGTGCGTG 57.429 47.619 5.39 0.00 33.84 5.34
212 213 2.260481 GGAGTTTCTACTAGTGCGTGC 58.740 52.381 5.39 0.00 33.84 5.34
213 214 2.094649 GGAGTTTCTACTAGTGCGTGCT 60.095 50.000 5.39 0.00 33.84 4.40
214 215 3.128242 GGAGTTTCTACTAGTGCGTGCTA 59.872 47.826 5.39 0.00 33.84 3.49
215 216 4.344448 GAGTTTCTACTAGTGCGTGCTAG 58.656 47.826 5.39 11.90 42.96 3.42
217 218 4.940046 AGTTTCTACTAGTGCGTGCTAGTA 59.060 41.667 19.56 19.56 46.84 1.82
218 219 4.871993 TTCTACTAGTGCGTGCTAGTAC 57.128 45.455 17.95 0.08 46.84 2.73
219 220 2.862536 TCTACTAGTGCGTGCTAGTACG 59.137 50.000 26.45 26.45 46.84 3.67
225 226 3.680525 CGTGCTAGTACGCAGCTG 58.319 61.111 20.29 10.11 41.21 4.24
226 227 1.874019 CGTGCTAGTACGCAGCTGG 60.874 63.158 20.29 8.27 41.21 4.85
227 228 1.215647 GTGCTAGTACGCAGCTGGT 59.784 57.895 17.12 13.97 41.21 4.00
228 229 0.802607 GTGCTAGTACGCAGCTGGTC 60.803 60.000 17.12 0.00 41.21 4.02
229 230 0.965866 TGCTAGTACGCAGCTGGTCT 60.966 55.000 17.12 12.40 39.83 3.85
230 231 0.248702 GCTAGTACGCAGCTGGTCTC 60.249 60.000 17.12 8.64 36.07 3.36
231 232 1.095600 CTAGTACGCAGCTGGTCTCA 58.904 55.000 17.12 0.00 0.00 3.27
232 233 1.064803 CTAGTACGCAGCTGGTCTCAG 59.935 57.143 17.12 5.88 43.64 3.35
233 234 1.153745 GTACGCAGCTGGTCTCAGG 60.154 63.158 17.12 0.00 41.19 3.86
240 241 3.842869 GCTGGTCTCAGGTTCGATT 57.157 52.632 0.00 0.00 41.19 3.34
241 242 1.646189 GCTGGTCTCAGGTTCGATTC 58.354 55.000 0.00 0.00 41.19 2.52
242 243 1.740718 GCTGGTCTCAGGTTCGATTCC 60.741 57.143 0.00 0.00 41.19 3.01
243 244 1.827969 CTGGTCTCAGGTTCGATTCCT 59.172 52.381 4.16 4.16 37.36 3.36
248 249 3.460648 CAGGTTCGATTCCTGGGTC 57.539 57.895 21.96 0.00 46.03 4.46
249 250 0.613260 CAGGTTCGATTCCTGGGTCA 59.387 55.000 21.96 0.00 46.03 4.02
250 251 0.613777 AGGTTCGATTCCTGGGTCAC 59.386 55.000 8.57 0.00 33.62 3.67
251 252 0.739813 GGTTCGATTCCTGGGTCACG 60.740 60.000 0.00 0.00 0.00 4.35
252 253 1.079405 TTCGATTCCTGGGTCACGC 60.079 57.895 0.00 0.00 0.00 5.34
253 254 2.829043 TTCGATTCCTGGGTCACGCG 62.829 60.000 3.53 3.53 0.00 6.01
254 255 3.195698 GATTCCTGGGTCACGCGC 61.196 66.667 5.73 0.00 0.00 6.86
259 260 4.072088 CTGGGTCACGCGCGTTTC 62.072 66.667 35.90 26.94 0.00 2.78
260 261 4.893601 TGGGTCACGCGCGTTTCA 62.894 61.111 35.90 24.18 0.00 2.69
261 262 3.419759 GGGTCACGCGCGTTTCAT 61.420 61.111 35.90 8.80 0.00 2.57
262 263 2.554272 GGTCACGCGCGTTTCATT 59.446 55.556 35.90 7.85 0.00 2.57
263 264 1.509162 GGTCACGCGCGTTTCATTC 60.509 57.895 35.90 18.32 0.00 2.67
264 265 1.491563 GTCACGCGCGTTTCATTCT 59.508 52.632 35.90 5.97 0.00 2.40
265 266 0.110823 GTCACGCGCGTTTCATTCTT 60.111 50.000 35.90 5.04 0.00 2.52
266 267 0.162933 TCACGCGCGTTTCATTCTTC 59.837 50.000 35.90 0.00 0.00 2.87
267 268 0.163788 CACGCGCGTTTCATTCTTCT 59.836 50.000 35.90 3.45 0.00 2.85
268 269 0.438830 ACGCGCGTTTCATTCTTCTC 59.561 50.000 32.73 0.00 0.00 2.87
269 270 0.247301 CGCGCGTTTCATTCTTCTCC 60.247 55.000 24.19 0.00 0.00 3.71
270 271 1.079503 GCGCGTTTCATTCTTCTCCT 58.920 50.000 8.43 0.00 0.00 3.69
271 272 1.201965 GCGCGTTTCATTCTTCTCCTG 60.202 52.381 8.43 0.00 0.00 3.86
272 273 2.069273 CGCGTTTCATTCTTCTCCTGT 58.931 47.619 0.00 0.00 0.00 4.00
273 274 3.250744 CGCGTTTCATTCTTCTCCTGTA 58.749 45.455 0.00 0.00 0.00 2.74
274 275 3.865745 CGCGTTTCATTCTTCTCCTGTAT 59.134 43.478 0.00 0.00 0.00 2.29
275 276 4.330074 CGCGTTTCATTCTTCTCCTGTATT 59.670 41.667 0.00 0.00 0.00 1.89
276 277 5.163854 CGCGTTTCATTCTTCTCCTGTATTT 60.164 40.000 0.00 0.00 0.00 1.40
277 278 6.612306 GCGTTTCATTCTTCTCCTGTATTTT 58.388 36.000 0.00 0.00 0.00 1.82
278 279 7.084486 GCGTTTCATTCTTCTCCTGTATTTTT 58.916 34.615 0.00 0.00 0.00 1.94
279 280 7.061094 GCGTTTCATTCTTCTCCTGTATTTTTG 59.939 37.037 0.00 0.00 0.00 2.44
280 281 7.061094 CGTTTCATTCTTCTCCTGTATTTTTGC 59.939 37.037 0.00 0.00 0.00 3.68
281 282 6.182039 TCATTCTTCTCCTGTATTTTTGCG 57.818 37.500 0.00 0.00 0.00 4.85
282 283 5.705441 TCATTCTTCTCCTGTATTTTTGCGT 59.295 36.000 0.00 0.00 0.00 5.24
283 284 5.607119 TTCTTCTCCTGTATTTTTGCGTC 57.393 39.130 0.00 0.00 0.00 5.19
284 285 4.000988 TCTTCTCCTGTATTTTTGCGTCC 58.999 43.478 0.00 0.00 0.00 4.79
285 286 3.695830 TCTCCTGTATTTTTGCGTCCT 57.304 42.857 0.00 0.00 0.00 3.85
286 287 3.334691 TCTCCTGTATTTTTGCGTCCTG 58.665 45.455 0.00 0.00 0.00 3.86
287 288 1.810151 TCCTGTATTTTTGCGTCCTGC 59.190 47.619 0.00 0.00 46.70 4.85
296 297 2.572284 GCGTCCTGCGGTAGAACT 59.428 61.111 0.00 0.00 41.69 3.01
297 298 1.516603 GCGTCCTGCGGTAGAACTC 60.517 63.158 0.00 0.00 41.69 3.01
298 299 1.139095 CGTCCTGCGGTAGAACTCC 59.861 63.158 0.00 0.00 36.85 3.85
299 300 1.592400 CGTCCTGCGGTAGAACTCCA 61.592 60.000 0.00 0.00 36.85 3.86
300 301 0.824759 GTCCTGCGGTAGAACTCCAT 59.175 55.000 0.00 0.00 0.00 3.41
301 302 0.824109 TCCTGCGGTAGAACTCCATG 59.176 55.000 0.00 0.00 0.00 3.66
302 303 0.179073 CCTGCGGTAGAACTCCATGG 60.179 60.000 4.97 4.97 0.00 3.66
303 304 0.179073 CTGCGGTAGAACTCCATGGG 60.179 60.000 13.02 5.22 0.00 4.00
304 305 1.523938 GCGGTAGAACTCCATGGGC 60.524 63.158 13.02 0.00 0.00 5.36
305 306 1.146263 CGGTAGAACTCCATGGGCC 59.854 63.158 13.02 0.00 0.00 5.80
306 307 1.146263 GGTAGAACTCCATGGGCCG 59.854 63.158 13.02 3.41 0.00 6.13
307 308 1.146263 GTAGAACTCCATGGGCCGG 59.854 63.158 13.02 0.00 0.00 6.13
308 309 2.742116 TAGAACTCCATGGGCCGGC 61.742 63.158 21.18 21.18 0.00 6.13
326 327 2.360980 CCAGTCGGGTCCCTCTCT 59.639 66.667 6.29 0.00 0.00 3.10
327 328 2.055042 CCAGTCGGGTCCCTCTCTG 61.055 68.421 6.29 10.94 0.00 3.35
328 329 1.304547 CAGTCGGGTCCCTCTCTGT 60.305 63.158 6.29 0.00 0.00 3.41
329 330 1.304547 AGTCGGGTCCCTCTCTGTG 60.305 63.158 6.29 0.00 0.00 3.66
330 331 2.680352 TCGGGTCCCTCTCTGTGC 60.680 66.667 6.29 0.00 0.00 4.57
331 332 4.135153 CGGGTCCCTCTCTGTGCG 62.135 72.222 6.29 0.00 0.00 5.34
332 333 3.775654 GGGTCCCTCTCTGTGCGG 61.776 72.222 0.00 0.00 0.00 5.69
333 334 4.459089 GGTCCCTCTCTGTGCGGC 62.459 72.222 0.00 0.00 0.00 6.53
334 335 3.695606 GTCCCTCTCTGTGCGGCA 61.696 66.667 0.00 0.00 0.00 5.69
335 336 3.695606 TCCCTCTCTGTGCGGCAC 61.696 66.667 25.55 25.55 34.56 5.01
348 349 2.579518 GGCACGCCGCTAATTTGC 60.580 61.111 1.42 1.42 41.91 3.68
349 350 2.579518 GCACGCCGCTAATTTGCC 60.580 61.111 6.29 0.00 37.77 4.52
350 351 2.277247 CACGCCGCTAATTTGCCG 60.277 61.111 6.29 7.52 0.00 5.69
351 352 4.174129 ACGCCGCTAATTTGCCGC 62.174 61.111 13.34 13.34 34.70 6.53
352 353 4.172772 CGCCGCTAATTTGCCGCA 62.173 61.111 20.41 0.00 37.10 5.69
353 354 2.180518 GCCGCTAATTTGCCGCAA 59.819 55.556 17.12 0.38 37.20 4.85
354 355 1.445238 GCCGCTAATTTGCCGCAAA 60.445 52.632 20.38 20.38 37.75 3.68
355 356 1.413008 GCCGCTAATTTGCCGCAAAG 61.413 55.000 22.25 11.17 36.76 2.77
356 357 1.413008 CCGCTAATTTGCCGCAAAGC 61.413 55.000 22.25 18.61 36.76 3.51
367 368 4.826600 GCAAAGCGCGGCATATAG 57.173 55.556 8.83 0.00 0.00 1.31
368 369 1.207593 GCAAAGCGCGGCATATAGG 59.792 57.895 8.83 0.00 0.00 2.57
369 370 1.227999 GCAAAGCGCGGCATATAGGA 61.228 55.000 8.83 0.00 0.00 2.94
370 371 0.792640 CAAAGCGCGGCATATAGGAG 59.207 55.000 8.83 0.00 0.00 3.69
371 372 0.320771 AAAGCGCGGCATATAGGAGG 60.321 55.000 8.83 0.00 0.00 4.30
372 373 1.472662 AAGCGCGGCATATAGGAGGT 61.473 55.000 8.83 0.00 0.00 3.85
373 374 1.446272 GCGCGGCATATAGGAGGTC 60.446 63.158 8.83 0.00 0.00 3.85
374 375 1.215647 CGCGGCATATAGGAGGTCC 59.784 63.158 0.00 0.00 0.00 4.46
375 376 1.597461 GCGGCATATAGGAGGTCCC 59.403 63.158 0.00 0.00 36.42 4.46
377 378 1.645710 CGGCATATAGGAGGTCCCTT 58.354 55.000 0.00 0.00 44.85 3.95
378 379 1.276421 CGGCATATAGGAGGTCCCTTG 59.724 57.143 0.00 0.00 44.85 3.61
379 380 2.621070 GGCATATAGGAGGTCCCTTGA 58.379 52.381 0.00 0.00 44.85 3.02
380 381 3.185455 GGCATATAGGAGGTCCCTTGAT 58.815 50.000 0.00 0.00 44.85 2.57
381 382 3.589288 GGCATATAGGAGGTCCCTTGATT 59.411 47.826 0.00 0.00 44.85 2.57
382 383 4.566488 GGCATATAGGAGGTCCCTTGATTG 60.566 50.000 0.00 0.00 44.85 2.67
383 384 4.287067 GCATATAGGAGGTCCCTTGATTGA 59.713 45.833 0.00 0.00 44.85 2.57
384 385 5.799213 CATATAGGAGGTCCCTTGATTGAC 58.201 45.833 0.00 0.00 44.85 3.18
388 389 2.083715 GGTCCCTTGATTGACCCCA 58.916 57.895 0.00 0.00 44.32 4.96
389 390 0.034089 GGTCCCTTGATTGACCCCAG 60.034 60.000 0.00 0.00 44.32 4.45
390 391 0.681243 GTCCCTTGATTGACCCCAGC 60.681 60.000 0.00 0.00 0.00 4.85
391 392 1.750399 CCCTTGATTGACCCCAGCG 60.750 63.158 0.00 0.00 0.00 5.18
392 393 1.750399 CCTTGATTGACCCCAGCGG 60.750 63.158 0.00 0.00 37.81 5.52
393 394 2.361104 TTGATTGACCCCAGCGGC 60.361 61.111 0.00 0.00 33.26 6.53
394 395 3.936772 TTGATTGACCCCAGCGGCC 62.937 63.158 0.00 0.00 33.26 6.13
395 396 4.424711 GATTGACCCCAGCGGCCA 62.425 66.667 2.24 0.00 33.26 5.36
396 397 3.721370 GATTGACCCCAGCGGCCAT 62.721 63.158 2.24 0.00 33.26 4.40
397 398 2.337879 GATTGACCCCAGCGGCCATA 62.338 60.000 2.24 0.00 33.26 2.74
398 399 2.624674 ATTGACCCCAGCGGCCATAC 62.625 60.000 2.24 0.00 33.26 2.39
399 400 3.480133 GACCCCAGCGGCCATACT 61.480 66.667 2.24 0.00 33.26 2.12
400 401 2.041301 ACCCCAGCGGCCATACTA 60.041 61.111 2.24 0.00 33.26 1.82
401 402 2.100879 GACCCCAGCGGCCATACTAG 62.101 65.000 2.24 0.00 33.26 2.57
402 403 1.837051 CCCCAGCGGCCATACTAGA 60.837 63.158 2.24 0.00 0.00 2.43
403 404 1.668294 CCCAGCGGCCATACTAGAG 59.332 63.158 2.24 0.00 0.00 2.43
404 405 1.005630 CCAGCGGCCATACTAGAGC 60.006 63.158 2.24 0.00 0.00 4.09
405 406 1.467678 CCAGCGGCCATACTAGAGCT 61.468 60.000 2.24 0.00 35.06 4.09
406 407 0.390860 CAGCGGCCATACTAGAGCTT 59.609 55.000 2.24 0.00 32.05 3.74
407 408 0.676736 AGCGGCCATACTAGAGCTTC 59.323 55.000 2.24 0.00 0.00 3.86
408 409 0.664767 GCGGCCATACTAGAGCTTCG 60.665 60.000 2.24 0.00 0.00 3.79
409 410 0.669077 CGGCCATACTAGAGCTTCGT 59.331 55.000 2.24 0.00 0.00 3.85
410 411 1.335142 CGGCCATACTAGAGCTTCGTC 60.335 57.143 2.24 0.00 0.00 4.20
411 412 1.000052 GGCCATACTAGAGCTTCGTCC 60.000 57.143 0.00 0.00 0.00 4.79
412 413 1.000052 GCCATACTAGAGCTTCGTCCC 60.000 57.143 0.00 0.00 0.00 4.46
413 414 2.588620 CCATACTAGAGCTTCGTCCCT 58.411 52.381 0.00 0.00 0.00 4.20
414 415 3.752665 CCATACTAGAGCTTCGTCCCTA 58.247 50.000 0.00 0.00 0.00 3.53
741 762 0.610174 ATGTTCTCAAGCGCTCAGGA 59.390 50.000 12.06 8.39 0.00 3.86
742 763 0.392706 TGTTCTCAAGCGCTCAGGAA 59.607 50.000 12.06 12.43 0.00 3.36
743 764 1.002430 TGTTCTCAAGCGCTCAGGAAT 59.998 47.619 12.06 0.00 0.00 3.01
744 765 1.396301 GTTCTCAAGCGCTCAGGAATG 59.604 52.381 12.06 3.80 0.00 2.67
745 766 0.897621 TCTCAAGCGCTCAGGAATGA 59.102 50.000 12.06 8.93 0.00 2.57
746 767 1.134877 TCTCAAGCGCTCAGGAATGAG 60.135 52.381 22.68 22.68 38.86 2.90
755 776 2.741612 CTCAGGAATGAGCGATGAGAC 58.258 52.381 0.00 0.00 39.80 3.36
756 777 2.361757 CTCAGGAATGAGCGATGAGACT 59.638 50.000 0.00 0.00 39.80 3.24
757 778 2.100418 TCAGGAATGAGCGATGAGACTG 59.900 50.000 0.00 0.00 0.00 3.51
758 779 1.411977 AGGAATGAGCGATGAGACTGG 59.588 52.381 0.00 0.00 0.00 4.00
759 780 1.137872 GGAATGAGCGATGAGACTGGT 59.862 52.381 0.00 0.00 0.00 4.00
760 781 2.419297 GGAATGAGCGATGAGACTGGTT 60.419 50.000 0.00 0.00 0.00 3.67
761 782 2.306341 ATGAGCGATGAGACTGGTTG 57.694 50.000 0.00 0.00 0.00 3.77
762 783 0.390340 TGAGCGATGAGACTGGTTGC 60.390 55.000 0.00 0.00 0.00 4.17
763 784 0.108424 GAGCGATGAGACTGGTTGCT 60.108 55.000 0.00 0.00 35.36 3.91
764 785 0.322975 AGCGATGAGACTGGTTGCTT 59.677 50.000 0.00 0.00 0.00 3.91
765 786 1.160137 GCGATGAGACTGGTTGCTTT 58.840 50.000 0.00 0.00 0.00 3.51
766 787 1.135859 GCGATGAGACTGGTTGCTTTG 60.136 52.381 0.00 0.00 0.00 2.77
767 788 2.146342 CGATGAGACTGGTTGCTTTGT 58.854 47.619 0.00 0.00 0.00 2.83
768 789 3.325870 CGATGAGACTGGTTGCTTTGTA 58.674 45.455 0.00 0.00 0.00 2.41
769 790 3.745975 CGATGAGACTGGTTGCTTTGTAA 59.254 43.478 0.00 0.00 0.00 2.41
770 791 4.393062 CGATGAGACTGGTTGCTTTGTAAT 59.607 41.667 0.00 0.00 0.00 1.89
771 792 5.580691 CGATGAGACTGGTTGCTTTGTAATA 59.419 40.000 0.00 0.00 0.00 0.98
772 793 6.455646 CGATGAGACTGGTTGCTTTGTAATAC 60.456 42.308 0.00 0.00 0.00 1.89
773 794 5.616270 TGAGACTGGTTGCTTTGTAATACA 58.384 37.500 0.00 0.00 0.00 2.29
774 795 6.058833 TGAGACTGGTTGCTTTGTAATACAA 58.941 36.000 1.08 1.08 36.11 2.41
775 796 6.544197 TGAGACTGGTTGCTTTGTAATACAAA 59.456 34.615 16.57 16.57 44.91 2.83
783 804 3.436577 TTTGTAATACAAAGCGGGGGA 57.563 42.857 13.93 0.00 42.55 4.81
784 805 3.436577 TTGTAATACAAAGCGGGGGAA 57.563 42.857 2.97 0.00 34.76 3.97
785 806 3.436577 TGTAATACAAAGCGGGGGAAA 57.563 42.857 0.00 0.00 0.00 3.13
786 807 3.083293 TGTAATACAAAGCGGGGGAAAC 58.917 45.455 0.00 0.00 0.00 2.78
787 808 5.587934 TTGTAATACAAAGCGGGGGAAACC 61.588 45.833 2.97 0.00 42.37 3.27
1053 1074 4.092771 TCTTCGTGTAATGAACCTCTCG 57.907 45.455 0.00 0.00 36.82 4.04
1186 1207 3.785887 AGGCCACTATCAAGGGAATACAA 59.214 43.478 5.01 0.00 0.00 2.41
2000 2842 3.244630 TGGCGGGTGTATCAAACTTAGTT 60.245 43.478 0.00 0.00 0.00 2.24
2089 2957 6.828788 AGATGAGCATGTTATGAGTTGAGAT 58.171 36.000 0.00 0.00 0.00 2.75
2113 2983 7.534723 TGACACTCCAAATAGTAGTACAGTT 57.465 36.000 2.52 0.00 0.00 3.16
2123 2993 9.640963 CAAATAGTAGTACAGTTGGCTATATCC 57.359 37.037 2.52 0.00 0.00 2.59
2135 3005 7.663081 CAGTTGGCTATATCCACATTTCACTAT 59.337 37.037 0.00 0.00 35.50 2.12
2137 3007 6.475504 TGGCTATATCCACATTTCACTATGG 58.524 40.000 0.00 0.00 0.00 2.74
2138 3008 6.044287 TGGCTATATCCACATTTCACTATGGT 59.956 38.462 0.00 0.00 33.67 3.55
2272 3210 6.222389 CCAATTTTCTTGTTTGGCTGACATA 58.778 36.000 0.00 0.00 34.03 2.29
2311 3249 8.347004 TGAAATGAAATAAATGTCCTGTGCTA 57.653 30.769 0.00 0.00 0.00 3.49
2429 3368 8.458052 CCCAAAAATAATAATGCACTTTTTCCC 58.542 33.333 0.00 0.00 29.22 3.97
2506 3445 4.381825 GGCACAAAGGCATCATAATTCACA 60.382 41.667 0.00 0.00 43.51 3.58
2543 3482 3.198635 TCAGATCTAGAAGGCACAAAGGG 59.801 47.826 0.00 0.00 0.00 3.95
2772 5461 3.211045 GAGGTGTGTAAGAAAACTGGCA 58.789 45.455 0.00 0.00 0.00 4.92
2813 5502 4.160439 TGAAGTGGGCAAACAACAAACATA 59.840 37.500 0.00 0.00 0.00 2.29
2861 5550 9.988350 CTTGTAAAAGCATCGTAATATTGAAGT 57.012 29.630 0.00 0.00 0.00 3.01
2863 5552 9.767684 TGTAAAAGCATCGTAATATTGAAGTTG 57.232 29.630 0.00 0.00 0.00 3.16
2864 5553 9.982291 GTAAAAGCATCGTAATATTGAAGTTGA 57.018 29.630 0.00 0.00 0.00 3.18
2866 5555 8.895932 AAAGCATCGTAATATTGAAGTTGAAC 57.104 30.769 0.00 0.00 0.00 3.18
2867 5556 7.609760 AGCATCGTAATATTGAAGTTGAACA 57.390 32.000 0.00 0.00 0.00 3.18
2868 5557 8.039603 AGCATCGTAATATTGAAGTTGAACAA 57.960 30.769 0.00 0.00 0.00 2.83
2869 5558 8.677300 AGCATCGTAATATTGAAGTTGAACAAT 58.323 29.630 0.00 0.00 39.53 2.71
2870 5559 8.736742 GCATCGTAATATTGAAGTTGAACAATG 58.263 33.333 0.00 0.00 37.32 2.82
2871 5560 9.773328 CATCGTAATATTGAAGTTGAACAATGT 57.227 29.630 0.00 0.00 37.32 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.623703 AGTTACTGGGGTGAACGTTTTT 58.376 40.909 0.46 0.00 0.00 1.94
36 37 3.286329 AGTTACTGGGGTGAACGTTTT 57.714 42.857 0.46 0.00 0.00 2.43
37 38 4.420522 TTAGTTACTGGGGTGAACGTTT 57.579 40.909 0.46 0.00 0.00 3.60
38 39 4.628963 ATTAGTTACTGGGGTGAACGTT 57.371 40.909 0.00 0.00 0.00 3.99
39 40 4.040706 TGAATTAGTTACTGGGGTGAACGT 59.959 41.667 0.00 0.00 0.00 3.99
40 41 4.571919 TGAATTAGTTACTGGGGTGAACG 58.428 43.478 0.00 0.00 0.00 3.95
41 42 5.801380 TCTGAATTAGTTACTGGGGTGAAC 58.199 41.667 0.00 0.00 0.00 3.18
42 43 6.636454 ATCTGAATTAGTTACTGGGGTGAA 57.364 37.500 0.00 0.00 0.00 3.18
43 44 6.629515 CGAATCTGAATTAGTTACTGGGGTGA 60.630 42.308 0.00 0.00 0.00 4.02
44 45 5.523916 CGAATCTGAATTAGTTACTGGGGTG 59.476 44.000 0.00 0.00 0.00 4.61
45 46 5.671493 CGAATCTGAATTAGTTACTGGGGT 58.329 41.667 0.00 0.00 0.00 4.95
46 47 4.511826 GCGAATCTGAATTAGTTACTGGGG 59.488 45.833 0.00 0.00 0.00 4.96
47 48 5.360591 AGCGAATCTGAATTAGTTACTGGG 58.639 41.667 0.00 0.00 0.00 4.45
48 49 6.978659 TGTAGCGAATCTGAATTAGTTACTGG 59.021 38.462 0.00 0.00 36.14 4.00
49 50 7.987268 TGTAGCGAATCTGAATTAGTTACTG 57.013 36.000 0.00 0.00 36.14 2.74
52 53 9.193133 GCTATTGTAGCGAATCTGAATTAGTTA 57.807 33.333 0.00 0.00 42.62 2.24
53 54 8.077836 GCTATTGTAGCGAATCTGAATTAGTT 57.922 34.615 0.00 0.00 42.62 2.24
54 55 7.644986 GCTATTGTAGCGAATCTGAATTAGT 57.355 36.000 0.00 0.00 42.62 2.24
75 76 6.540438 ACCAGTACTGTAGCAAATTAGCTA 57.460 37.500 21.18 0.00 44.50 3.32
77 78 5.064834 GGAACCAGTACTGTAGCAAATTAGC 59.935 44.000 21.18 0.00 0.00 3.09
78 79 6.170506 TGGAACCAGTACTGTAGCAAATTAG 58.829 40.000 21.18 4.68 0.00 1.73
104 105 2.756760 AGAAACGGTATCCTGTAGCGAA 59.243 45.455 12.76 0.00 40.41 4.70
110 111 5.613329 TGTAAAACAGAAACGGTATCCTGT 58.387 37.500 0.00 0.00 41.14 4.00
133 134 9.794719 GGATAGCTTAAAGACCTAACCATAAAT 57.205 33.333 0.00 0.00 0.00 1.40
134 135 8.774183 TGGATAGCTTAAAGACCTAACCATAAA 58.226 33.333 0.00 0.00 31.58 1.40
135 136 8.208903 GTGGATAGCTTAAAGACCTAACCATAA 58.791 37.037 0.00 0.00 36.71 1.90
136 137 7.567622 AGTGGATAGCTTAAAGACCTAACCATA 59.432 37.037 0.00 0.00 36.71 2.74
137 138 6.387220 AGTGGATAGCTTAAAGACCTAACCAT 59.613 38.462 0.00 0.00 36.71 3.55
138 139 5.724854 AGTGGATAGCTTAAAGACCTAACCA 59.275 40.000 0.00 0.00 33.36 3.67
139 140 6.049790 CAGTGGATAGCTTAAAGACCTAACC 58.950 44.000 0.00 0.00 0.00 2.85
140 141 5.524281 GCAGTGGATAGCTTAAAGACCTAAC 59.476 44.000 0.00 0.00 0.00 2.34
141 142 5.425539 AGCAGTGGATAGCTTAAAGACCTAA 59.574 40.000 0.00 0.00 38.01 2.69
142 143 4.962995 AGCAGTGGATAGCTTAAAGACCTA 59.037 41.667 0.00 0.00 38.01 3.08
143 144 3.777522 AGCAGTGGATAGCTTAAAGACCT 59.222 43.478 0.00 0.00 38.01 3.85
144 145 4.143986 AGCAGTGGATAGCTTAAAGACC 57.856 45.455 0.00 0.00 38.01 3.85
152 153 5.500234 TGTCAAATAAAGCAGTGGATAGCT 58.500 37.500 0.00 0.00 44.31 3.32
153 154 5.818136 TGTCAAATAAAGCAGTGGATAGC 57.182 39.130 0.00 0.00 0.00 2.97
154 155 7.144722 TGTTGTCAAATAAAGCAGTGGATAG 57.855 36.000 0.00 0.00 0.00 2.08
155 156 6.349280 GCTGTTGTCAAATAAAGCAGTGGATA 60.349 38.462 0.00 0.00 0.00 2.59
156 157 5.565439 GCTGTTGTCAAATAAAGCAGTGGAT 60.565 40.000 0.00 0.00 0.00 3.41
157 158 4.261572 GCTGTTGTCAAATAAAGCAGTGGA 60.262 41.667 0.00 0.00 0.00 4.02
158 159 3.983344 GCTGTTGTCAAATAAAGCAGTGG 59.017 43.478 0.00 0.00 0.00 4.00
159 160 4.442073 GTGCTGTTGTCAAATAAAGCAGTG 59.558 41.667 11.63 0.00 41.01 3.66
160 161 4.339247 AGTGCTGTTGTCAAATAAAGCAGT 59.661 37.500 11.63 11.91 41.01 4.40
161 162 4.863491 AGTGCTGTTGTCAAATAAAGCAG 58.137 39.130 11.63 4.61 41.01 4.24
162 163 4.916983 AGTGCTGTTGTCAAATAAAGCA 57.083 36.364 8.60 8.60 38.27 3.91
163 164 5.043248 ACAAGTGCTGTTGTCAAATAAAGC 58.957 37.500 0.00 0.00 35.71 3.51
176 177 3.560636 ACTCCAACTAACAAGTGCTGT 57.439 42.857 0.00 0.00 41.27 4.40
177 178 4.576463 AGAAACTCCAACTAACAAGTGCTG 59.424 41.667 0.00 0.00 0.00 4.41
178 179 4.781934 AGAAACTCCAACTAACAAGTGCT 58.218 39.130 0.00 0.00 0.00 4.40
179 180 5.758784 AGTAGAAACTCCAACTAACAAGTGC 59.241 40.000 0.00 0.00 0.00 4.40
180 181 8.142551 ACTAGTAGAAACTCCAACTAACAAGTG 58.857 37.037 3.59 0.00 37.15 3.16
181 182 8.142551 CACTAGTAGAAACTCCAACTAACAAGT 58.857 37.037 3.59 0.00 37.15 3.16
182 183 7.116519 GCACTAGTAGAAACTCCAACTAACAAG 59.883 40.741 3.59 0.00 37.15 3.16
183 184 6.927381 GCACTAGTAGAAACTCCAACTAACAA 59.073 38.462 3.59 0.00 37.15 2.83
184 185 6.453092 GCACTAGTAGAAACTCCAACTAACA 58.547 40.000 3.59 0.00 37.15 2.41
185 186 5.572126 CGCACTAGTAGAAACTCCAACTAAC 59.428 44.000 3.59 0.00 37.15 2.34
186 187 5.242393 ACGCACTAGTAGAAACTCCAACTAA 59.758 40.000 3.59 0.00 37.15 2.24
187 188 4.763793 ACGCACTAGTAGAAACTCCAACTA 59.236 41.667 3.59 0.00 37.15 2.24
188 189 3.573110 ACGCACTAGTAGAAACTCCAACT 59.427 43.478 3.59 0.00 37.15 3.16
189 190 3.673809 CACGCACTAGTAGAAACTCCAAC 59.326 47.826 3.59 0.00 37.15 3.77
190 191 3.859627 GCACGCACTAGTAGAAACTCCAA 60.860 47.826 3.59 0.00 37.15 3.53
191 192 2.352421 GCACGCACTAGTAGAAACTCCA 60.352 50.000 3.59 0.00 37.15 3.86
192 193 2.094649 AGCACGCACTAGTAGAAACTCC 60.095 50.000 3.59 0.00 37.15 3.85
193 194 3.219052 AGCACGCACTAGTAGAAACTC 57.781 47.619 3.59 0.00 37.15 3.01
194 195 4.358494 CTAGCACGCACTAGTAGAAACT 57.642 45.455 3.59 0.00 39.91 2.66
208 209 1.874019 CCAGCTGCGTACTAGCACG 60.874 63.158 11.26 11.26 42.92 5.34
209 210 0.802607 GACCAGCTGCGTACTAGCAC 60.803 60.000 8.66 5.05 42.92 4.40
210 211 0.965866 AGACCAGCTGCGTACTAGCA 60.966 55.000 8.66 8.21 45.96 3.49
211 212 0.248702 GAGACCAGCTGCGTACTAGC 60.249 60.000 8.66 10.09 41.43 3.42
212 213 1.064803 CTGAGACCAGCTGCGTACTAG 59.935 57.143 8.66 3.55 33.07 2.57
213 214 1.095600 CTGAGACCAGCTGCGTACTA 58.904 55.000 8.66 0.00 33.07 1.82
214 215 1.599606 CCTGAGACCAGCTGCGTACT 61.600 60.000 8.66 4.04 39.07 2.73
215 216 1.153745 CCTGAGACCAGCTGCGTAC 60.154 63.158 8.66 6.62 39.07 3.67
216 217 1.185618 AACCTGAGACCAGCTGCGTA 61.186 55.000 8.66 0.00 39.07 4.42
217 218 2.441822 GAACCTGAGACCAGCTGCGT 62.442 60.000 8.66 7.96 39.07 5.24
218 219 1.739562 GAACCTGAGACCAGCTGCG 60.740 63.158 8.66 4.27 39.07 5.18
219 220 1.739562 CGAACCTGAGACCAGCTGC 60.740 63.158 8.66 0.00 39.07 5.25
220 221 0.534412 ATCGAACCTGAGACCAGCTG 59.466 55.000 6.78 6.78 39.07 4.24
221 222 1.205893 GAATCGAACCTGAGACCAGCT 59.794 52.381 0.00 0.00 39.07 4.24
222 223 1.646189 GAATCGAACCTGAGACCAGC 58.354 55.000 0.00 0.00 39.07 4.85
223 224 1.827969 AGGAATCGAACCTGAGACCAG 59.172 52.381 12.66 0.00 40.09 4.00
224 225 1.938585 AGGAATCGAACCTGAGACCA 58.061 50.000 12.66 0.00 36.30 4.02
231 232 0.613777 GTGACCCAGGAATCGAACCT 59.386 55.000 8.44 8.44 38.40 3.50
232 233 0.739813 CGTGACCCAGGAATCGAACC 60.740 60.000 0.00 0.00 0.00 3.62
233 234 1.359459 GCGTGACCCAGGAATCGAAC 61.359 60.000 0.00 0.00 0.00 3.95
234 235 1.079405 GCGTGACCCAGGAATCGAA 60.079 57.895 0.00 0.00 0.00 3.71
235 236 2.577059 GCGTGACCCAGGAATCGA 59.423 61.111 0.00 0.00 0.00 3.59
236 237 2.885644 CGCGTGACCCAGGAATCG 60.886 66.667 0.00 0.00 0.00 3.34
237 238 3.195698 GCGCGTGACCCAGGAATC 61.196 66.667 8.43 0.00 0.00 2.52
242 243 4.072088 GAAACGCGCGTGACCCAG 62.072 66.667 38.44 4.31 0.00 4.45
243 244 4.893601 TGAAACGCGCGTGACCCA 62.894 61.111 38.44 26.34 0.00 4.51
244 245 2.827959 GAATGAAACGCGCGTGACCC 62.828 60.000 38.44 24.12 0.00 4.46
245 246 1.509162 GAATGAAACGCGCGTGACC 60.509 57.895 38.44 26.61 0.00 4.02
246 247 0.110823 AAGAATGAAACGCGCGTGAC 60.111 50.000 38.44 30.50 0.00 3.67
247 248 0.162933 GAAGAATGAAACGCGCGTGA 59.837 50.000 38.44 23.54 0.00 4.35
248 249 0.163788 AGAAGAATGAAACGCGCGTG 59.836 50.000 38.44 19.78 0.00 5.34
249 250 0.438830 GAGAAGAATGAAACGCGCGT 59.561 50.000 32.73 32.73 0.00 6.01
250 251 0.247301 GGAGAAGAATGAAACGCGCG 60.247 55.000 30.96 30.96 0.00 6.86
251 252 1.079503 AGGAGAAGAATGAAACGCGC 58.920 50.000 5.73 0.00 0.00 6.86
252 253 2.069273 ACAGGAGAAGAATGAAACGCG 58.931 47.619 3.53 3.53 0.00 6.01
253 254 5.803020 AATACAGGAGAAGAATGAAACGC 57.197 39.130 0.00 0.00 0.00 4.84
254 255 7.061094 GCAAAAATACAGGAGAAGAATGAAACG 59.939 37.037 0.00 0.00 0.00 3.60
255 256 7.061094 CGCAAAAATACAGGAGAAGAATGAAAC 59.939 37.037 0.00 0.00 0.00 2.78
256 257 7.083858 CGCAAAAATACAGGAGAAGAATGAAA 58.916 34.615 0.00 0.00 0.00 2.69
257 258 6.206634 ACGCAAAAATACAGGAGAAGAATGAA 59.793 34.615 0.00 0.00 0.00 2.57
258 259 5.705441 ACGCAAAAATACAGGAGAAGAATGA 59.295 36.000 0.00 0.00 0.00 2.57
259 260 5.942872 ACGCAAAAATACAGGAGAAGAATG 58.057 37.500 0.00 0.00 0.00 2.67
260 261 5.123979 GGACGCAAAAATACAGGAGAAGAAT 59.876 40.000 0.00 0.00 0.00 2.40
261 262 4.454504 GGACGCAAAAATACAGGAGAAGAA 59.545 41.667 0.00 0.00 0.00 2.52
262 263 4.000988 GGACGCAAAAATACAGGAGAAGA 58.999 43.478 0.00 0.00 0.00 2.87
263 264 4.003648 AGGACGCAAAAATACAGGAGAAG 58.996 43.478 0.00 0.00 0.00 2.85
264 265 3.751175 CAGGACGCAAAAATACAGGAGAA 59.249 43.478 0.00 0.00 0.00 2.87
265 266 3.334691 CAGGACGCAAAAATACAGGAGA 58.665 45.455 0.00 0.00 0.00 3.71
266 267 2.159517 GCAGGACGCAAAAATACAGGAG 60.160 50.000 0.00 0.00 41.79 3.69
267 268 1.810151 GCAGGACGCAAAAATACAGGA 59.190 47.619 0.00 0.00 41.79 3.86
268 269 1.465689 CGCAGGACGCAAAAATACAGG 60.466 52.381 0.00 0.00 42.60 4.00
269 270 1.882198 CGCAGGACGCAAAAATACAG 58.118 50.000 0.00 0.00 42.60 2.74
284 285 0.179073 CCCATGGAGTTCTACCGCAG 60.179 60.000 15.22 0.00 0.00 5.18
285 286 1.904771 CCCATGGAGTTCTACCGCA 59.095 57.895 15.22 0.00 0.00 5.69
286 287 1.523938 GCCCATGGAGTTCTACCGC 60.524 63.158 15.22 0.00 0.00 5.68
287 288 1.146263 GGCCCATGGAGTTCTACCG 59.854 63.158 15.22 0.00 0.00 4.02
288 289 1.146263 CGGCCCATGGAGTTCTACC 59.854 63.158 15.22 1.79 0.00 3.18
289 290 1.146263 CCGGCCCATGGAGTTCTAC 59.854 63.158 15.22 0.00 0.00 2.59
290 291 2.742116 GCCGGCCCATGGAGTTCTA 61.742 63.158 18.11 0.00 0.00 2.10
291 292 4.115199 GCCGGCCCATGGAGTTCT 62.115 66.667 18.11 0.00 0.00 3.01
309 310 2.055042 CAGAGAGGGACCCGACTGG 61.055 68.421 19.75 9.37 41.37 4.00
310 311 1.304547 ACAGAGAGGGACCCGACTG 60.305 63.158 23.35 23.35 0.00 3.51
311 312 1.304547 CACAGAGAGGGACCCGACT 60.305 63.158 4.40 8.98 0.00 4.18
312 313 3.007973 GCACAGAGAGGGACCCGAC 62.008 68.421 4.40 3.62 0.00 4.79
313 314 2.680352 GCACAGAGAGGGACCCGA 60.680 66.667 4.40 0.00 0.00 5.14
314 315 4.135153 CGCACAGAGAGGGACCCG 62.135 72.222 4.40 0.00 0.00 5.28
315 316 3.775654 CCGCACAGAGAGGGACCC 61.776 72.222 0.59 0.59 32.86 4.46
316 317 4.459089 GCCGCACAGAGAGGGACC 62.459 72.222 0.00 0.00 37.71 4.46
317 318 3.695606 TGCCGCACAGAGAGGGAC 61.696 66.667 0.00 0.00 37.71 4.46
318 319 3.695606 GTGCCGCACAGAGAGGGA 61.696 66.667 18.79 0.00 37.71 4.20
332 333 2.579518 GGCAAATTAGCGGCGTGC 60.580 61.111 9.37 9.23 46.98 5.34
333 334 2.277247 CGGCAAATTAGCGGCGTG 60.277 61.111 9.37 0.00 45.16 5.34
337 338 1.413008 GCTTTGCGGCAAATTAGCGG 61.413 55.000 26.56 15.53 32.70 5.52
338 339 1.990674 GCTTTGCGGCAAATTAGCG 59.009 52.632 26.56 16.19 32.70 4.26
350 351 1.207593 CCTATATGCCGCGCTTTGC 59.792 57.895 5.56 6.12 41.47 3.68
351 352 0.792640 CTCCTATATGCCGCGCTTTG 59.207 55.000 5.56 0.00 0.00 2.77
352 353 0.320771 CCTCCTATATGCCGCGCTTT 60.321 55.000 5.56 0.00 0.00 3.51
353 354 1.293498 CCTCCTATATGCCGCGCTT 59.707 57.895 5.56 0.00 0.00 4.68
354 355 1.878656 GACCTCCTATATGCCGCGCT 61.879 60.000 5.56 0.00 0.00 5.92
355 356 1.446272 GACCTCCTATATGCCGCGC 60.446 63.158 0.00 0.00 0.00 6.86
356 357 1.215647 GGACCTCCTATATGCCGCG 59.784 63.158 0.00 0.00 0.00 6.46
357 358 0.905337 AGGGACCTCCTATATGCCGC 60.905 60.000 0.00 0.00 45.98 6.53
358 359 3.383162 AGGGACCTCCTATATGCCG 57.617 57.895 0.00 0.00 45.98 5.69
363 364 7.960865 GGGGTCAATCAAGGGACCTCCTATA 62.961 52.000 10.33 0.00 46.86 1.31
367 368 3.146754 GGGGTCAATCAAGGGACCTCC 62.147 61.905 10.33 6.67 46.86 4.30
371 372 0.681243 GCTGGGGTCAATCAAGGGAC 60.681 60.000 0.00 0.00 0.00 4.46
372 373 1.691219 GCTGGGGTCAATCAAGGGA 59.309 57.895 0.00 0.00 0.00 4.20
373 374 1.750399 CGCTGGGGTCAATCAAGGG 60.750 63.158 0.00 0.00 0.00 3.95
374 375 1.750399 CCGCTGGGGTCAATCAAGG 60.750 63.158 1.98 0.00 0.00 3.61
375 376 2.409870 GCCGCTGGGGTCAATCAAG 61.410 63.158 12.70 0.00 38.44 3.02
376 377 2.361104 GCCGCTGGGGTCAATCAA 60.361 61.111 12.70 0.00 38.44 2.57
377 378 4.424711 GGCCGCTGGGGTCAATCA 62.425 66.667 10.82 0.00 41.38 2.57
382 383 2.100879 CTAGTATGGCCGCTGGGGTC 62.101 65.000 8.62 8.62 42.42 4.46
383 384 2.041301 TAGTATGGCCGCTGGGGT 60.041 61.111 12.70 0.00 38.44 4.95
384 385 1.821061 CTCTAGTATGGCCGCTGGGG 61.821 65.000 6.36 6.36 39.58 4.96
385 386 1.668294 CTCTAGTATGGCCGCTGGG 59.332 63.158 0.00 0.00 0.00 4.45
386 387 1.005630 GCTCTAGTATGGCCGCTGG 60.006 63.158 0.00 0.00 0.00 4.85
387 388 0.390860 AAGCTCTAGTATGGCCGCTG 59.609 55.000 0.00 0.00 0.00 5.18
388 389 0.676736 GAAGCTCTAGTATGGCCGCT 59.323 55.000 0.00 0.00 0.00 5.52
389 390 0.664767 CGAAGCTCTAGTATGGCCGC 60.665 60.000 0.00 0.00 0.00 6.53
390 391 0.669077 ACGAAGCTCTAGTATGGCCG 59.331 55.000 0.00 0.00 0.00 6.13
391 392 1.000052 GGACGAAGCTCTAGTATGGCC 60.000 57.143 0.00 0.00 0.00 5.36
392 393 1.000052 GGGACGAAGCTCTAGTATGGC 60.000 57.143 0.00 0.00 0.00 4.40
393 394 2.588620 AGGGACGAAGCTCTAGTATGG 58.411 52.381 0.00 0.00 0.00 2.74
394 395 4.391155 AGTAGGGACGAAGCTCTAGTATG 58.609 47.826 0.00 0.00 0.00 2.39
395 396 4.710313 AGTAGGGACGAAGCTCTAGTAT 57.290 45.455 0.00 0.00 0.00 2.12
396 397 4.163839 AGAAGTAGGGACGAAGCTCTAGTA 59.836 45.833 0.00 0.00 0.00 1.82
397 398 3.054213 AGAAGTAGGGACGAAGCTCTAGT 60.054 47.826 0.00 0.00 0.00 2.57
398 399 3.314080 CAGAAGTAGGGACGAAGCTCTAG 59.686 52.174 0.00 0.00 0.00 2.43
399 400 3.280295 CAGAAGTAGGGACGAAGCTCTA 58.720 50.000 0.00 0.00 0.00 2.43
400 401 2.096248 CAGAAGTAGGGACGAAGCTCT 58.904 52.381 0.00 0.00 0.00 4.09
401 402 1.819903 ACAGAAGTAGGGACGAAGCTC 59.180 52.381 0.00 0.00 0.00 4.09
402 403 1.819903 GACAGAAGTAGGGACGAAGCT 59.180 52.381 0.00 0.00 0.00 3.74
403 404 1.544691 TGACAGAAGTAGGGACGAAGC 59.455 52.381 0.00 0.00 0.00 3.86
404 405 3.839293 CTTGACAGAAGTAGGGACGAAG 58.161 50.000 0.00 0.00 0.00 3.79
405 406 2.029290 GCTTGACAGAAGTAGGGACGAA 60.029 50.000 0.00 0.00 0.00 3.85
406 407 1.544691 GCTTGACAGAAGTAGGGACGA 59.455 52.381 0.00 0.00 0.00 4.20
407 408 1.272490 TGCTTGACAGAAGTAGGGACG 59.728 52.381 0.00 0.00 0.00 4.79
408 409 2.300437 AGTGCTTGACAGAAGTAGGGAC 59.700 50.000 0.00 0.00 0.00 4.46
409 410 2.609747 AGTGCTTGACAGAAGTAGGGA 58.390 47.619 0.00 0.00 0.00 4.20
410 411 3.244215 TGAAGTGCTTGACAGAAGTAGGG 60.244 47.826 0.00 0.00 0.00 3.53
411 412 3.993081 CTGAAGTGCTTGACAGAAGTAGG 59.007 47.826 0.00 0.00 32.90 3.18
412 413 4.876125 TCTGAAGTGCTTGACAGAAGTAG 58.124 43.478 0.00 0.00 36.63 2.57
413 414 4.937201 TCTGAAGTGCTTGACAGAAGTA 57.063 40.909 0.00 0.00 36.63 2.24
414 415 3.827008 TCTGAAGTGCTTGACAGAAGT 57.173 42.857 0.00 0.00 36.63 3.01
741 762 2.625737 CAACCAGTCTCATCGCTCATT 58.374 47.619 0.00 0.00 0.00 2.57
742 763 1.741732 GCAACCAGTCTCATCGCTCAT 60.742 52.381 0.00 0.00 0.00 2.90
743 764 0.390340 GCAACCAGTCTCATCGCTCA 60.390 55.000 0.00 0.00 0.00 4.26
744 765 0.108424 AGCAACCAGTCTCATCGCTC 60.108 55.000 0.00 0.00 0.00 5.03
745 766 0.322975 AAGCAACCAGTCTCATCGCT 59.677 50.000 0.00 0.00 0.00 4.93
746 767 1.135859 CAAAGCAACCAGTCTCATCGC 60.136 52.381 0.00 0.00 0.00 4.58
747 768 2.146342 ACAAAGCAACCAGTCTCATCG 58.854 47.619 0.00 0.00 0.00 3.84
748 769 5.886960 ATTACAAAGCAACCAGTCTCATC 57.113 39.130 0.00 0.00 0.00 2.92
749 770 6.237901 TGTATTACAAAGCAACCAGTCTCAT 58.762 36.000 0.00 0.00 0.00 2.90
750 771 5.616270 TGTATTACAAAGCAACCAGTCTCA 58.384 37.500 0.00 0.00 0.00 3.27
751 772 6.554334 TTGTATTACAAAGCAACCAGTCTC 57.446 37.500 6.79 0.00 34.76 3.36
752 773 6.952773 TTTGTATTACAAAGCAACCAGTCT 57.047 33.333 16.17 0.00 42.55 3.24
763 784 3.436577 TCCCCCGCTTTGTATTACAAA 57.563 42.857 18.39 18.39 44.91 2.83
764 785 3.436577 TTCCCCCGCTTTGTATTACAA 57.563 42.857 5.14 5.14 36.11 2.41
765 786 3.083293 GTTTCCCCCGCTTTGTATTACA 58.917 45.455 0.00 0.00 0.00 2.41
766 787 2.424601 GGTTTCCCCCGCTTTGTATTAC 59.575 50.000 0.00 0.00 0.00 1.89
767 788 2.621147 GGGTTTCCCCCGCTTTGTATTA 60.621 50.000 0.00 0.00 45.80 0.98
768 789 1.552578 GGTTTCCCCCGCTTTGTATT 58.447 50.000 0.00 0.00 0.00 1.89
769 790 0.323999 GGGTTTCCCCCGCTTTGTAT 60.324 55.000 0.00 0.00 45.80 2.29
770 791 1.075305 GGGTTTCCCCCGCTTTGTA 59.925 57.895 0.00 0.00 45.80 2.41
771 792 2.203582 GGGTTTCCCCCGCTTTGT 60.204 61.111 0.00 0.00 45.80 2.83
779 800 7.062333 CTCATTCGAGAAAAAGGGTTTCCCC 62.062 48.000 0.71 0.00 46.38 4.81
780 801 3.824443 TCATTCGAGAAAAAGGGTTTCCC 59.176 43.478 0.00 0.00 45.90 3.97
781 802 4.616143 GCTCATTCGAGAAAAAGGGTTTCC 60.616 45.833 0.00 0.00 42.34 3.13
782 803 4.476862 GCTCATTCGAGAAAAAGGGTTTC 58.523 43.478 0.00 0.00 42.34 2.78
783 804 3.058224 CGCTCATTCGAGAAAAAGGGTTT 60.058 43.478 0.00 0.00 42.34 3.27
784 805 2.484264 CGCTCATTCGAGAAAAAGGGTT 59.516 45.455 0.00 0.00 42.34 4.11
785 806 2.076863 CGCTCATTCGAGAAAAAGGGT 58.923 47.619 0.00 0.00 42.34 4.34
786 807 2.346803 TCGCTCATTCGAGAAAAAGGG 58.653 47.619 0.00 7.89 42.34 3.95
787 808 3.618594 TCATCGCTCATTCGAGAAAAAGG 59.381 43.478 0.00 0.00 42.34 3.11
788 809 4.564372 TCTCATCGCTCATTCGAGAAAAAG 59.436 41.667 0.00 0.00 42.34 2.27
789 810 4.327357 GTCTCATCGCTCATTCGAGAAAAA 59.673 41.667 0.00 0.00 42.34 1.94
790 811 3.859961 GTCTCATCGCTCATTCGAGAAAA 59.140 43.478 0.00 0.00 42.34 2.29
791 812 3.119495 TGTCTCATCGCTCATTCGAGAAA 60.119 43.478 0.00 0.00 42.34 2.52
792 813 2.423538 TGTCTCATCGCTCATTCGAGAA 59.576 45.455 0.00 0.00 42.34 2.87
793 814 2.017049 TGTCTCATCGCTCATTCGAGA 58.983 47.619 0.00 0.00 42.34 4.04
794 815 2.481903 TGTCTCATCGCTCATTCGAG 57.518 50.000 0.00 0.00 42.14 4.04
795 816 4.022849 ACATATGTCTCATCGCTCATTCGA 60.023 41.667 1.41 0.00 43.09 3.71
796 817 4.233005 ACATATGTCTCATCGCTCATTCG 58.767 43.478 1.41 0.00 0.00 3.34
797 818 4.624882 GGACATATGTCTCATCGCTCATTC 59.375 45.833 29.87 9.39 44.20 2.67
1303 1686 1.864176 GGTACGCGGAGTTGTTTGG 59.136 57.895 12.47 0.00 0.00 3.28
1889 2716 7.050970 TCACTCCGCTTATAGTAAATGACAT 57.949 36.000 0.00 0.00 0.00 3.06
2000 2842 5.887598 ACAAGCCTGCATCTTTATTGATGTA 59.112 36.000 6.40 1.58 44.02 2.29
2089 2957 7.375834 CAACTGTACTACTATTTGGAGTGTCA 58.624 38.462 0.00 0.00 0.00 3.58
2113 2983 6.044287 ACCATAGTGAAATGTGGATATAGCCA 59.956 38.462 5.37 5.37 35.18 4.75
2135 3005 3.704566 ACGAGCTGGTATAGAAATCACCA 59.295 43.478 0.00 0.00 40.01 4.17
2137 3007 5.006746 CCAAACGAGCTGGTATAGAAATCAC 59.993 44.000 0.30 0.00 0.00 3.06
2138 3008 5.116180 CCAAACGAGCTGGTATAGAAATCA 58.884 41.667 0.30 0.00 0.00 2.57
2304 3242 2.229543 TCAAAGCAGCCAAATAGCACAG 59.770 45.455 0.00 0.00 34.23 3.66
2311 3249 8.698210 TCTGATTATAATTCAAAGCAGCCAAAT 58.302 29.630 11.25 0.00 38.63 2.32
2347 3285 7.629157 TGAATGTATAGATGGAGTTTTGGACA 58.371 34.615 0.00 0.00 0.00 4.02
2353 3291 9.466497 AATGTGTTGAATGTATAGATGGAGTTT 57.534 29.630 0.00 0.00 0.00 2.66
2506 3445 4.978099 AGATCTGAACCATGTTTGTCTGT 58.022 39.130 0.00 0.00 0.00 3.41
2570 3509 4.946784 ATACAAGCTTTGAACCGTGATC 57.053 40.909 0.00 0.00 0.00 2.92
2575 3514 3.438781 TGCCTAATACAAGCTTTGAACCG 59.561 43.478 0.00 0.00 0.00 4.44
2728 3667 7.554118 CCTCATCACATTTGTAGGACAATAAGT 59.446 37.037 0.00 0.00 38.00 2.24
2788 5477 1.550327 TGTTGTTTGCCCACTTCACA 58.450 45.000 0.00 0.00 0.00 3.58
2813 5502 8.116026 ACAAGATGGAACTAAAATATTGGTCCT 58.884 33.333 9.18 0.00 29.03 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.