Multiple sequence alignment - TraesCS7D01G102000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G102000 chr7D 100.000 3494 0 0 1 3494 61229928 61226435 0.000000e+00 6453.0
1 TraesCS7D01G102000 chr7D 89.353 1484 152 6 1024 2504 60705558 60704078 0.000000e+00 1860.0
2 TraesCS7D01G102000 chr7D 82.004 1367 228 16 1138 2495 62280164 62281521 0.000000e+00 1146.0
3 TraesCS7D01G102000 chr7D 81.404 1339 236 11 1138 2470 62122074 62123405 0.000000e+00 1081.0
4 TraesCS7D01G102000 chr7D 97.059 272 7 1 2740 3011 452445690 452445960 1.140000e-124 457.0
5 TraesCS7D01G102000 chr7D 83.688 141 18 4 1 136 117784601 117784741 1.020000e-25 128.0
6 TraesCS7D01G102000 chr7D 92.500 40 3 0 36 75 520848212 520848173 1.350000e-04 58.4
7 TraesCS7D01G102000 chr7A 97.550 2204 51 3 537 2739 65155303 65153102 0.000000e+00 3768.0
8 TraesCS7D01G102000 chr7A 81.648 1335 232 11 1138 2466 65441918 65443245 0.000000e+00 1096.0
9 TraesCS7D01G102000 chr7A 93.773 546 26 6 1 540 65156121 65155578 0.000000e+00 813.0
10 TraesCS7D01G102000 chr7A 94.118 357 17 2 3138 3494 65152864 65152512 1.100000e-149 540.0
11 TraesCS7D01G102000 chr7A 86.364 330 41 2 3007 3336 65550842 65550517 1.190000e-94 357.0
12 TraesCS7D01G102000 chr7A 94.815 135 4 1 3007 3141 65153107 65152976 1.270000e-49 207.0
13 TraesCS7D01G102000 chr7A 87.117 163 19 2 3332 3494 65545561 65545401 2.140000e-42 183.0
14 TraesCS7D01G102000 chr7B 86.965 1473 188 4 1024 2494 3342531 3341061 0.000000e+00 1653.0
15 TraesCS7D01G102000 chr7B 85.485 1557 216 10 997 2548 3540080 3541631 0.000000e+00 1615.0
16 TraesCS7D01G102000 chr7B 87.652 1312 131 15 1340 2647 3507860 3506576 0.000000e+00 1496.0
17 TraesCS7D01G102000 chr7B 81.844 358 38 13 492 832 3510135 3509788 3.440000e-70 276.0
18 TraesCS7D01G102000 chr7B 86.441 236 31 1 867 1101 3509786 3509551 1.240000e-64 257.0
19 TraesCS7D01G102000 chr7B 90.265 113 8 1 3144 3256 3340479 3340370 1.010000e-30 145.0
20 TraesCS7D01G102000 chr7B 86.364 110 11 3 2493 2599 3341032 3340924 2.200000e-22 117.0
21 TraesCS7D01G102000 chr2B 81.633 1323 239 4 1175 2495 731482351 731481031 0.000000e+00 1094.0
22 TraesCS7D01G102000 chr2B 97.770 269 6 0 2740 3008 426053133 426052865 6.830000e-127 464.0
23 TraesCS7D01G102000 chr3A 98.141 269 4 1 2740 3007 382103221 382103489 5.280000e-128 468.0
24 TraesCS7D01G102000 chr3A 96.390 277 8 2 2736 3011 724469826 724469551 4.110000e-124 455.0
25 TraesCS7D01G102000 chr1B 98.141 269 4 1 2740 3007 145452050 145451782 5.280000e-128 468.0
26 TraesCS7D01G102000 chr6B 97.770 269 6 0 2740 3008 35829640 35829908 6.830000e-127 464.0
27 TraesCS7D01G102000 chr6B 97.398 269 7 0 2739 3007 560189708 560189976 3.180000e-125 459.0
28 TraesCS7D01G102000 chr1D 97.761 268 6 0 2740 3007 419022380 419022113 2.460000e-126 462.0
29 TraesCS7D01G102000 chr4A 97.407 270 6 1 2740 3008 161132286 161132555 3.180000e-125 459.0
30 TraesCS7D01G102000 chr4D 81.333 75 14 0 1 75 161262831 161262905 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G102000 chr7D 61226435 61229928 3493 True 6453.000000 6453 100.000000 1 3494 1 chr7D.!!$R2 3493
1 TraesCS7D01G102000 chr7D 60704078 60705558 1480 True 1860.000000 1860 89.353000 1024 2504 1 chr7D.!!$R1 1480
2 TraesCS7D01G102000 chr7D 62280164 62281521 1357 False 1146.000000 1146 82.004000 1138 2495 1 chr7D.!!$F2 1357
3 TraesCS7D01G102000 chr7D 62122074 62123405 1331 False 1081.000000 1081 81.404000 1138 2470 1 chr7D.!!$F1 1332
4 TraesCS7D01G102000 chr7A 65152512 65156121 3609 True 1332.000000 3768 95.064000 1 3494 4 chr7A.!!$R3 3493
5 TraesCS7D01G102000 chr7A 65441918 65443245 1327 False 1096.000000 1096 81.648000 1138 2466 1 chr7A.!!$F1 1328
6 TraesCS7D01G102000 chr7B 3540080 3541631 1551 False 1615.000000 1615 85.485000 997 2548 1 chr7B.!!$F1 1551
7 TraesCS7D01G102000 chr7B 3506576 3510135 3559 True 676.333333 1496 85.312333 492 2647 3 chr7B.!!$R2 2155
8 TraesCS7D01G102000 chr7B 3340370 3342531 2161 True 638.333333 1653 87.864667 1024 3256 3 chr7B.!!$R1 2232
9 TraesCS7D01G102000 chr2B 731481031 731482351 1320 True 1094.000000 1094 81.633000 1175 2495 1 chr2B.!!$R2 1320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1151 1.070577 CGGAGTGCAGAGAAACGTTTG 60.071 52.381 20.1 5.73 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2792 4802 0.030369 GTGCATGCTCTAGCCAATGC 59.97 55.0 20.33 16.33 45.25 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 175 6.524101 AATTGTAATGTTGGAATAAGGCGT 57.476 33.333 0.00 0.00 0.00 5.68
175 178 5.979993 TGTAATGTTGGAATAAGGCGTCTA 58.020 37.500 0.00 0.00 0.00 2.59
192 195 3.347216 GTCTACATTGTGCTTGGATGGT 58.653 45.455 0.00 0.00 0.00 3.55
210 213 5.351189 GGATGGTGCAAAATAAATTGTCACC 59.649 40.000 18.31 18.31 46.30 4.02
247 260 6.720309 TCAACAATCTCCAGTTGATATGGAA 58.280 36.000 4.07 0.00 46.46 3.53
248 261 6.599244 TCAACAATCTCCAGTTGATATGGAAC 59.401 38.462 4.07 0.00 46.46 3.62
249 262 5.440610 ACAATCTCCAGTTGATATGGAACC 58.559 41.667 0.00 0.00 46.04 3.62
250 263 5.044919 ACAATCTCCAGTTGATATGGAACCA 60.045 40.000 0.00 0.00 46.04 3.67
251 264 5.715439 ATCTCCAGTTGATATGGAACCAA 57.285 39.130 0.00 0.00 46.04 3.67
252 265 5.512942 TCTCCAGTTGATATGGAACCAAA 57.487 39.130 0.00 0.00 46.04 3.28
253 266 6.078456 TCTCCAGTTGATATGGAACCAAAT 57.922 37.500 0.00 0.00 46.04 2.32
257 270 5.581874 CCAGTTGATATGGAACCAAATTTGC 59.418 40.000 12.92 0.00 40.51 3.68
263 276 2.888212 TGGAACCAAATTTGCTAGCCT 58.112 42.857 13.29 0.00 0.00 4.58
292 305 8.031277 AGAAGCAAAATGAATTGGTATGACTTC 58.969 33.333 0.00 0.00 39.92 3.01
293 306 7.230849 AGCAAAATGAATTGGTATGACTTCA 57.769 32.000 0.00 0.00 39.11 3.02
295 308 8.970020 AGCAAAATGAATTGGTATGACTTCATA 58.030 29.630 0.00 0.00 39.11 2.15
356 369 1.736126 CCATAGCATGCATCCGATGTC 59.264 52.381 21.98 3.50 0.00 3.06
393 406 2.749600 TGCACCATTTTCCCTATGCAT 58.250 42.857 3.79 3.79 38.11 3.96
424 437 3.069729 ACACGAAGGAAGCAGTAAGAAGT 59.930 43.478 0.00 0.00 0.00 3.01
463 476 2.607635 GTGATTTTCTGGAATCGCGCTA 59.392 45.455 5.56 0.00 38.57 4.26
519 532 1.420138 ACCCGAAAAGTCACCATGAGT 59.580 47.619 0.00 0.00 0.00 3.41
559 850 9.925268 CAGTTAGTTGTTATTACGTTCAAAACT 57.075 29.630 0.00 0.00 0.00 2.66
701 1001 1.544691 TGGAGTAGTTGAGAAGTCGGC 59.455 52.381 0.00 0.00 0.00 5.54
787 1087 2.243221 GGATGCCCCATTAGCCTATGAT 59.757 50.000 0.00 0.00 34.14 2.45
834 1134 6.176896 TGAATGTTGTTATGGAAGATTCGGA 58.823 36.000 0.00 0.00 36.40 4.55
850 1150 1.202486 TCGGAGTGCAGAGAAACGTTT 60.202 47.619 14.57 14.57 0.00 3.60
851 1151 1.070577 CGGAGTGCAGAGAAACGTTTG 60.071 52.381 20.10 5.73 0.00 2.93
942 1242 6.591750 AGAAGCACTAGTACAACACTACAT 57.408 37.500 0.00 0.00 38.80 2.29
1041 1342 1.405105 AGCAACAACATGAGTTTGCGT 59.595 42.857 17.84 8.83 43.11 5.24
1083 1384 1.877637 TGTTGTACAATCGCACTGCT 58.122 45.000 12.26 0.00 0.00 4.24
1084 1385 1.798223 TGTTGTACAATCGCACTGCTC 59.202 47.619 12.26 0.00 0.00 4.26
1401 3167 5.479306 TCTACAGTCAACTTCATTGCTACC 58.521 41.667 0.00 0.00 38.29 3.18
1476 3242 9.816354 CATCATTATATACATCCGTATTGTGGA 57.184 33.333 0.00 0.00 39.17 4.02
1893 3660 2.435938 TCCATGGCTCGGTTTCGC 60.436 61.111 6.96 0.00 36.13 4.70
1995 3762 1.698506 ACCTAGGGATTGCTCTCTCG 58.301 55.000 14.81 0.00 33.07 4.04
2029 3796 0.179137 TGTCGCTAAGGATGCACTCG 60.179 55.000 0.00 0.00 0.00 4.18
2240 4007 7.984050 ACAACATGGTCTTAATCTATCAGACAG 59.016 37.037 0.00 0.00 39.02 3.51
2430 4197 4.332819 GTGTGTATACAACCATCTTCAGGC 59.667 45.833 7.25 0.00 38.82 4.85
2618 4538 5.047872 TCGTAAATATACAAGCGCCTCCATA 60.048 40.000 2.29 0.00 32.02 2.74
2735 4745 2.098443 TGAAGTTTGACGCAAGGGAAAC 59.902 45.455 0.00 0.00 46.39 2.78
2736 4746 2.052782 AGTTTGACGCAAGGGAAACT 57.947 45.000 0.00 0.00 43.66 2.66
2737 4747 3.202829 AGTTTGACGCAAGGGAAACTA 57.797 42.857 0.00 0.00 45.38 2.24
2738 4748 3.547746 AGTTTGACGCAAGGGAAACTAA 58.452 40.909 0.00 0.00 45.38 2.24
2739 4749 4.142038 AGTTTGACGCAAGGGAAACTAAT 58.858 39.130 0.00 0.00 45.38 1.73
2740 4750 4.023193 AGTTTGACGCAAGGGAAACTAATG 60.023 41.667 0.00 0.00 45.38 1.90
2741 4751 3.134574 TGACGCAAGGGAAACTAATGT 57.865 42.857 0.00 0.00 46.39 2.71
2742 4752 3.482436 TGACGCAAGGGAAACTAATGTT 58.518 40.909 0.00 0.00 46.39 2.71
2743 4753 3.252215 TGACGCAAGGGAAACTAATGTTG 59.748 43.478 0.00 0.00 46.39 3.33
2744 4754 3.482436 ACGCAAGGGAAACTAATGTTGA 58.518 40.909 0.00 0.00 46.39 3.18
2745 4755 3.252458 ACGCAAGGGAAACTAATGTTGAC 59.748 43.478 0.00 0.00 46.39 3.18
2746 4756 3.666902 CGCAAGGGAAACTAATGTTGACG 60.667 47.826 0.00 0.00 36.39 4.35
2747 4757 3.252458 GCAAGGGAAACTAATGTTGACGT 59.748 43.478 0.00 0.00 36.39 4.34
2748 4758 4.453136 GCAAGGGAAACTAATGTTGACGTA 59.547 41.667 0.00 0.00 36.39 3.57
2749 4759 5.123344 GCAAGGGAAACTAATGTTGACGTAT 59.877 40.000 0.00 0.00 36.39 3.06
2750 4760 6.314400 GCAAGGGAAACTAATGTTGACGTATA 59.686 38.462 0.00 0.00 36.39 1.47
2751 4761 7.148373 GCAAGGGAAACTAATGTTGACGTATAA 60.148 37.037 0.00 0.00 36.39 0.98
2752 4762 8.889717 CAAGGGAAACTAATGTTGACGTATAAT 58.110 33.333 0.00 0.00 36.39 1.28
2753 4763 8.433421 AGGGAAACTAATGTTGACGTATAATG 57.567 34.615 0.00 0.00 36.39 1.90
2754 4764 8.044908 AGGGAAACTAATGTTGACGTATAATGT 58.955 33.333 0.00 0.00 36.39 2.71
2755 4765 8.120465 GGGAAACTAATGTTGACGTATAATGTG 58.880 37.037 0.00 0.00 36.39 3.21
2756 4766 7.638683 GGAAACTAATGTTGACGTATAATGTGC 59.361 37.037 0.00 0.00 36.39 4.57
2757 4767 7.843490 AACTAATGTTGACGTATAATGTGCT 57.157 32.000 0.00 0.00 34.71 4.40
2758 4768 7.234187 ACTAATGTTGACGTATAATGTGCTG 57.766 36.000 0.00 0.00 0.00 4.41
2759 4769 4.536364 ATGTTGACGTATAATGTGCTGC 57.464 40.909 0.00 0.00 0.00 5.25
2760 4770 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
2761 4771 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
2762 4772 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
2763 4773 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
2764 4774 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
2765 4775 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
2766 4776 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
2767 4777 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
2768 4778 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
2769 4779 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
2770 4780 2.977772 ATGTGCTGCCTAGTCTCTTC 57.022 50.000 0.00 0.00 0.00 2.87
2771 4781 0.898320 TGTGCTGCCTAGTCTCTTCC 59.102 55.000 0.00 0.00 0.00 3.46
2772 4782 0.898320 GTGCTGCCTAGTCTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
2773 4783 1.484240 GTGCTGCCTAGTCTCTTCCAT 59.516 52.381 0.00 0.00 0.00 3.41
2774 4784 1.759445 TGCTGCCTAGTCTCTTCCATC 59.241 52.381 0.00 0.00 0.00 3.51
2775 4785 1.759445 GCTGCCTAGTCTCTTCCATCA 59.241 52.381 0.00 0.00 0.00 3.07
2776 4786 2.224018 GCTGCCTAGTCTCTTCCATCAG 60.224 54.545 0.00 0.00 0.00 2.90
2777 4787 2.364970 CTGCCTAGTCTCTTCCATCAGG 59.635 54.545 0.00 0.00 0.00 3.86
2778 4788 2.292521 TGCCTAGTCTCTTCCATCAGGT 60.293 50.000 0.00 0.00 35.89 4.00
2779 4789 2.364002 GCCTAGTCTCTTCCATCAGGTC 59.636 54.545 0.00 0.00 35.89 3.85
2780 4790 2.621055 CCTAGTCTCTTCCATCAGGTCG 59.379 54.545 0.00 0.00 35.89 4.79
2781 4791 1.479709 AGTCTCTTCCATCAGGTCGG 58.520 55.000 0.00 0.00 35.89 4.79
2782 4792 1.187087 GTCTCTTCCATCAGGTCGGT 58.813 55.000 0.00 0.00 35.89 4.69
2783 4793 1.135333 GTCTCTTCCATCAGGTCGGTC 59.865 57.143 0.00 0.00 35.89 4.79
2784 4794 1.006043 TCTCTTCCATCAGGTCGGTCT 59.994 52.381 0.00 0.00 35.89 3.85
2785 4795 1.827969 CTCTTCCATCAGGTCGGTCTT 59.172 52.381 0.00 0.00 35.89 3.01
2786 4796 2.234908 CTCTTCCATCAGGTCGGTCTTT 59.765 50.000 0.00 0.00 35.89 2.52
2787 4797 2.637872 TCTTCCATCAGGTCGGTCTTTT 59.362 45.455 0.00 0.00 35.89 2.27
2788 4798 2.472695 TCCATCAGGTCGGTCTTTTG 57.527 50.000 0.00 0.00 35.89 2.44
2789 4799 1.003118 TCCATCAGGTCGGTCTTTTGG 59.997 52.381 0.00 0.00 35.89 3.28
2790 4800 1.271379 CCATCAGGTCGGTCTTTTGGT 60.271 52.381 0.00 0.00 0.00 3.67
2791 4801 2.504367 CATCAGGTCGGTCTTTTGGTT 58.496 47.619 0.00 0.00 0.00 3.67
2792 4802 1.961793 TCAGGTCGGTCTTTTGGTTG 58.038 50.000 0.00 0.00 0.00 3.77
2793 4803 0.310854 CAGGTCGGTCTTTTGGTTGC 59.689 55.000 0.00 0.00 0.00 4.17
2794 4804 0.106918 AGGTCGGTCTTTTGGTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
2795 4805 0.958822 GGTCGGTCTTTTGGTTGCAT 59.041 50.000 0.00 0.00 0.00 3.96
2796 4806 1.339929 GGTCGGTCTTTTGGTTGCATT 59.660 47.619 0.00 0.00 0.00 3.56
2797 4807 2.393764 GTCGGTCTTTTGGTTGCATTG 58.606 47.619 0.00 0.00 0.00 2.82
2798 4808 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
2799 4809 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
2800 4810 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
2801 4811 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
2802 4812 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
2803 4813 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
2804 4814 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
2805 4815 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
2806 4816 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
2807 4817 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
2808 4818 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
2809 4819 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
2810 4820 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
2811 4821 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
2812 4822 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
2813 4823 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
2814 4824 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
2815 4825 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
2816 4826 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
2817 4827 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
2818 4828 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
2819 4829 3.494048 GGCTAGAGCATGCACTTCTACAT 60.494 47.826 22.83 0.00 44.36 2.29
2820 4830 3.493877 GCTAGAGCATGCACTTCTACATG 59.506 47.826 22.83 8.90 45.19 3.21
2821 4831 2.915349 AGAGCATGCACTTCTACATGG 58.085 47.619 21.98 0.00 43.13 3.66
2822 4832 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
2825 4835 4.739046 GCATGCACTTCTACATGGTATC 57.261 45.455 14.21 0.00 43.13 2.24
2826 4836 4.129380 GCATGCACTTCTACATGGTATCA 58.871 43.478 14.21 0.00 43.13 2.15
2827 4837 4.212847 GCATGCACTTCTACATGGTATCAG 59.787 45.833 14.21 0.00 43.13 2.90
2828 4838 5.604565 CATGCACTTCTACATGGTATCAGA 58.395 41.667 0.00 0.00 39.98 3.27
2829 4839 5.268118 TGCACTTCTACATGGTATCAGAG 57.732 43.478 0.00 0.00 0.00 3.35
2830 4840 4.054671 GCACTTCTACATGGTATCAGAGC 58.945 47.826 0.00 0.00 0.00 4.09
2831 4841 4.626042 CACTTCTACATGGTATCAGAGCC 58.374 47.826 0.00 0.00 0.00 4.70
2832 4842 4.100035 CACTTCTACATGGTATCAGAGCCA 59.900 45.833 0.00 0.00 39.33 4.75
2833 4843 4.716784 ACTTCTACATGGTATCAGAGCCAA 59.283 41.667 0.00 0.00 38.38 4.52
2834 4844 4.944619 TCTACATGGTATCAGAGCCAAG 57.055 45.455 0.00 0.10 38.38 3.61
2835 4845 4.546674 TCTACATGGTATCAGAGCCAAGA 58.453 43.478 0.00 1.07 38.38 3.02
2836 4846 3.834489 ACATGGTATCAGAGCCAAGAG 57.166 47.619 0.00 1.38 38.38 2.85
2837 4847 2.437281 ACATGGTATCAGAGCCAAGAGG 59.563 50.000 0.00 0.00 38.38 3.69
2838 4848 2.254152 TGGTATCAGAGCCAAGAGGT 57.746 50.000 0.00 0.00 37.19 3.85
2839 4849 2.111384 TGGTATCAGAGCCAAGAGGTC 58.889 52.381 0.00 0.00 43.67 3.85
2845 4855 2.573920 GAGCCAAGAGGTCTCGAGT 58.426 57.895 13.13 0.00 40.01 4.18
2846 4856 0.892063 GAGCCAAGAGGTCTCGAGTT 59.108 55.000 13.13 0.00 40.01 3.01
2847 4857 0.892063 AGCCAAGAGGTCTCGAGTTC 59.108 55.000 13.13 9.04 37.19 3.01
2848 4858 0.603569 GCCAAGAGGTCTCGAGTTCA 59.396 55.000 13.13 0.00 37.19 3.18
2849 4859 1.000955 GCCAAGAGGTCTCGAGTTCAA 59.999 52.381 13.13 0.00 37.19 2.69
2850 4860 2.928731 GCCAAGAGGTCTCGAGTTCAAG 60.929 54.545 13.13 5.88 37.19 3.02
2851 4861 2.558795 CCAAGAGGTCTCGAGTTCAAGA 59.441 50.000 13.13 0.00 34.09 3.02
2852 4862 3.570559 CAAGAGGTCTCGAGTTCAAGAC 58.429 50.000 13.13 1.74 40.96 3.01
2855 4865 3.403276 GTCTCGAGTTCAAGACCCG 57.597 57.895 13.13 0.00 36.69 5.28
2856 4866 0.109226 GTCTCGAGTTCAAGACCCGG 60.109 60.000 13.13 0.00 36.69 5.73
2857 4867 1.446272 CTCGAGTTCAAGACCCGGC 60.446 63.158 3.62 0.00 29.53 6.13
2858 4868 1.878656 CTCGAGTTCAAGACCCGGCT 61.879 60.000 3.62 0.00 29.53 5.52
2859 4869 1.738099 CGAGTTCAAGACCCGGCTG 60.738 63.158 0.00 0.00 0.00 4.85
2860 4870 1.376037 GAGTTCAAGACCCGGCTGG 60.376 63.158 3.88 3.88 41.37 4.85
2861 4871 3.056328 GTTCAAGACCCGGCTGGC 61.056 66.667 5.85 0.00 37.83 4.85
2862 4872 4.697756 TTCAAGACCCGGCTGGCG 62.698 66.667 17.39 17.39 37.83 5.69
2868 4878 4.418328 ACCCGGCTGGCGCAATTA 62.418 61.111 18.95 0.00 37.83 1.40
2869 4879 3.137459 CCCGGCTGGCGCAATTAA 61.137 61.111 18.95 0.00 38.10 1.40
2870 4880 2.705821 CCCGGCTGGCGCAATTAAA 61.706 57.895 18.95 0.00 38.10 1.52
2871 4881 1.437160 CCGGCTGGCGCAATTAAAT 59.563 52.632 18.95 0.00 38.10 1.40
2872 4882 0.179113 CCGGCTGGCGCAATTAAATT 60.179 50.000 18.95 0.00 38.10 1.82
2873 4883 0.922717 CGGCTGGCGCAATTAAATTG 59.077 50.000 11.55 0.00 43.06 2.32
2885 4895 5.535043 CAATTAAATTGCAGCCCACTTTC 57.465 39.130 0.00 0.00 32.92 2.62
2886 4896 3.296322 TTAAATTGCAGCCCACTTTCG 57.704 42.857 0.00 0.00 30.20 3.46
2887 4897 0.318120 AAATTGCAGCCCACTTTCGG 59.682 50.000 0.00 0.00 0.00 4.30
2888 4898 0.827507 AATTGCAGCCCACTTTCGGT 60.828 50.000 0.00 0.00 0.00 4.69
2889 4899 1.244019 ATTGCAGCCCACTTTCGGTC 61.244 55.000 0.00 0.00 0.00 4.79
2890 4900 3.056328 GCAGCCCACTTTCGGTCC 61.056 66.667 0.00 0.00 0.00 4.46
2891 4901 2.429930 CAGCCCACTTTCGGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
2892 4902 1.966451 CAGCCCACTTTCGGTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
2893 4903 3.047877 GCCCACTTTCGGTCCACG 61.048 66.667 0.00 0.00 46.11 4.94
2894 4904 2.424302 CCCACTTTCGGTCCACGT 59.576 61.111 0.00 0.00 44.69 4.49
2895 4905 1.227734 CCCACTTTCGGTCCACGTT 60.228 57.895 0.00 0.00 44.69 3.99
2896 4906 0.816421 CCCACTTTCGGTCCACGTTT 60.816 55.000 0.00 0.00 44.69 3.60
2897 4907 1.540797 CCCACTTTCGGTCCACGTTTA 60.541 52.381 0.00 0.00 44.69 2.01
2898 4908 1.796459 CCACTTTCGGTCCACGTTTAG 59.204 52.381 0.00 0.00 44.69 1.85
2899 4909 1.796459 CACTTTCGGTCCACGTTTAGG 59.204 52.381 0.00 0.00 44.69 2.69
2900 4910 0.794473 CTTTCGGTCCACGTTTAGGC 59.206 55.000 0.00 0.00 44.69 3.93
2901 4911 0.603439 TTTCGGTCCACGTTTAGGCC 60.603 55.000 0.00 0.00 44.69 5.19
2902 4912 1.474332 TTCGGTCCACGTTTAGGCCT 61.474 55.000 11.78 11.78 44.69 5.19
2903 4913 1.740296 CGGTCCACGTTTAGGCCTG 60.740 63.158 17.99 0.00 37.93 4.85
2904 4914 1.675219 GGTCCACGTTTAGGCCTGA 59.325 57.895 17.99 3.42 0.00 3.86
2905 4915 0.391263 GGTCCACGTTTAGGCCTGAG 60.391 60.000 17.99 6.27 0.00 3.35
2906 4916 0.391263 GTCCACGTTTAGGCCTGAGG 60.391 60.000 17.99 12.15 0.00 3.86
2907 4917 1.078426 CCACGTTTAGGCCTGAGGG 60.078 63.158 17.99 5.37 0.00 4.30
2908 4918 1.550130 CCACGTTTAGGCCTGAGGGA 61.550 60.000 17.99 0.00 33.58 4.20
2909 4919 0.108138 CACGTTTAGGCCTGAGGGAG 60.108 60.000 17.99 4.31 33.58 4.30
2910 4920 1.153349 CGTTTAGGCCTGAGGGAGC 60.153 63.158 17.99 0.00 33.58 4.70
2916 4926 4.767255 GCCTGAGGGAGCCACACG 62.767 72.222 0.00 0.00 33.58 4.49
2917 4927 3.314331 CCTGAGGGAGCCACACGT 61.314 66.667 0.00 0.00 33.58 4.49
2918 4928 2.047844 CTGAGGGAGCCACACGTG 60.048 66.667 15.48 15.48 0.00 4.49
2919 4929 2.523168 TGAGGGAGCCACACGTGA 60.523 61.111 25.01 0.00 0.00 4.35
2920 4930 2.262915 GAGGGAGCCACACGTGAG 59.737 66.667 25.01 15.20 0.00 3.51
2921 4931 3.302347 GAGGGAGCCACACGTGAGG 62.302 68.421 25.64 25.64 0.00 3.86
2922 4932 4.394712 GGGAGCCACACGTGAGGG 62.395 72.222 29.55 25.23 43.28 4.30
2923 4933 4.394712 GGAGCCACACGTGAGGGG 62.395 72.222 29.55 23.01 40.46 4.79
2924 4934 4.394712 GAGCCACACGTGAGGGGG 62.395 72.222 29.55 20.83 40.46 5.40
2925 4935 4.954118 AGCCACACGTGAGGGGGA 62.954 66.667 29.55 0.00 44.61 4.81
2926 4936 4.394712 GCCACACGTGAGGGGGAG 62.395 72.222 29.55 7.85 44.61 4.30
2927 4937 2.923035 CCACACGTGAGGGGGAGT 60.923 66.667 25.01 0.00 44.61 3.85
2928 4938 2.343758 CACACGTGAGGGGGAGTG 59.656 66.667 25.01 3.00 44.61 3.51
2929 4939 2.122989 ACACGTGAGGGGGAGTGT 60.123 61.111 25.01 0.00 42.26 3.55
2930 4940 1.764854 ACACGTGAGGGGGAGTGTT 60.765 57.895 25.01 0.00 44.32 3.32
2931 4941 1.301716 CACGTGAGGGGGAGTGTTG 60.302 63.158 10.90 0.00 0.00 3.33
2932 4942 1.458777 ACGTGAGGGGGAGTGTTGA 60.459 57.895 0.00 0.00 0.00 3.18
2933 4943 1.004918 CGTGAGGGGGAGTGTTGAC 60.005 63.158 0.00 0.00 0.00 3.18
2934 4944 1.004918 GTGAGGGGGAGTGTTGACG 60.005 63.158 0.00 0.00 0.00 4.35
2935 4945 1.458777 TGAGGGGGAGTGTTGACGT 60.459 57.895 0.00 0.00 0.00 4.34
2936 4946 0.178955 TGAGGGGGAGTGTTGACGTA 60.179 55.000 0.00 0.00 0.00 3.57
2937 4947 1.192428 GAGGGGGAGTGTTGACGTAT 58.808 55.000 0.00 0.00 0.00 3.06
2938 4948 2.291735 TGAGGGGGAGTGTTGACGTATA 60.292 50.000 0.00 0.00 0.00 1.47
2939 4949 2.762327 GAGGGGGAGTGTTGACGTATAA 59.238 50.000 0.00 0.00 0.00 0.98
2940 4950 3.381335 AGGGGGAGTGTTGACGTATAAT 58.619 45.455 0.00 0.00 0.00 1.28
2941 4951 4.549668 AGGGGGAGTGTTGACGTATAATA 58.450 43.478 0.00 0.00 0.00 0.98
2942 4952 5.152934 AGGGGGAGTGTTGACGTATAATAT 58.847 41.667 0.00 0.00 0.00 1.28
2943 4953 5.011738 AGGGGGAGTGTTGACGTATAATATG 59.988 44.000 0.00 0.00 0.00 1.78
2944 4954 4.689345 GGGGAGTGTTGACGTATAATATGC 59.311 45.833 0.00 0.00 0.00 3.14
2945 4955 5.510861 GGGGAGTGTTGACGTATAATATGCT 60.511 44.000 0.00 0.00 0.00 3.79
2946 4956 5.405571 GGGAGTGTTGACGTATAATATGCTG 59.594 44.000 0.00 0.00 0.00 4.41
2947 4957 5.107453 GGAGTGTTGACGTATAATATGCTGC 60.107 44.000 0.00 0.00 0.00 5.25
2948 4958 4.750098 AGTGTTGACGTATAATATGCTGCC 59.250 41.667 0.00 0.00 0.00 4.85
2949 4959 4.750098 GTGTTGACGTATAATATGCTGCCT 59.250 41.667 0.00 0.00 0.00 4.75
2950 4960 5.924254 GTGTTGACGTATAATATGCTGCCTA 59.076 40.000 0.00 0.00 0.00 3.93
2951 4961 6.089551 GTGTTGACGTATAATATGCTGCCTAG 59.910 42.308 0.00 0.00 0.00 3.02
2952 4962 5.977489 TGACGTATAATATGCTGCCTAGT 57.023 39.130 0.00 0.00 0.00 2.57
2953 4963 5.950883 TGACGTATAATATGCTGCCTAGTC 58.049 41.667 0.00 0.00 0.00 2.59
2954 4964 5.710567 TGACGTATAATATGCTGCCTAGTCT 59.289 40.000 0.00 0.00 0.00 3.24
2955 4965 6.127980 TGACGTATAATATGCTGCCTAGTCTC 60.128 42.308 0.00 0.00 0.00 3.36
2956 4966 5.946972 ACGTATAATATGCTGCCTAGTCTCT 59.053 40.000 0.00 0.00 0.00 3.10
2957 4967 6.434652 ACGTATAATATGCTGCCTAGTCTCTT 59.565 38.462 0.00 0.00 0.00 2.85
2958 4968 6.970043 CGTATAATATGCTGCCTAGTCTCTTC 59.030 42.308 0.00 0.00 0.00 2.87
2959 4969 4.615588 AATATGCTGCCTAGTCTCTTCC 57.384 45.455 0.00 0.00 0.00 3.46
2960 4970 1.871418 ATGCTGCCTAGTCTCTTCCA 58.129 50.000 0.00 0.00 0.00 3.53
2961 4971 1.871418 TGCTGCCTAGTCTCTTCCAT 58.129 50.000 0.00 0.00 0.00 3.41
2962 4972 1.759445 TGCTGCCTAGTCTCTTCCATC 59.241 52.381 0.00 0.00 0.00 3.51
2963 4973 1.759445 GCTGCCTAGTCTCTTCCATCA 59.241 52.381 0.00 0.00 0.00 3.07
2964 4974 2.224018 GCTGCCTAGTCTCTTCCATCAG 60.224 54.545 0.00 0.00 0.00 2.90
2965 4975 3.295093 CTGCCTAGTCTCTTCCATCAGA 58.705 50.000 0.00 0.00 0.00 3.27
2966 4976 3.896888 CTGCCTAGTCTCTTCCATCAGAT 59.103 47.826 0.00 0.00 0.00 2.90
2967 4977 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
2968 4978 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
2969 4979 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
2970 4980 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
2971 4981 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
2972 4982 2.955660 GTCTCTTCCATCAGATCGGTCT 59.044 50.000 0.00 0.00 34.14 3.85
2973 4983 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
2974 4984 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
2975 4985 4.467795 TCTCTTCCATCAGATCGGTCTTTT 59.532 41.667 0.00 0.00 30.42 2.27
2976 4986 4.507710 TCTTCCATCAGATCGGTCTTTTG 58.492 43.478 0.00 0.00 30.42 2.44
2977 4987 4.222810 TCTTCCATCAGATCGGTCTTTTGA 59.777 41.667 0.00 0.00 30.42 2.69
2978 4988 4.760530 TCCATCAGATCGGTCTTTTGAT 57.239 40.909 0.00 0.00 30.42 2.57
2979 4989 5.102953 TCCATCAGATCGGTCTTTTGATT 57.897 39.130 0.00 0.00 30.42 2.57
2980 4990 4.877823 TCCATCAGATCGGTCTTTTGATTG 59.122 41.667 0.00 0.00 30.42 2.67
2981 4991 4.497006 CCATCAGATCGGTCTTTTGATTGC 60.497 45.833 0.00 0.00 30.42 3.56
2982 4992 3.673902 TCAGATCGGTCTTTTGATTGCA 58.326 40.909 0.00 0.00 30.42 4.08
2983 4993 4.264253 TCAGATCGGTCTTTTGATTGCAT 58.736 39.130 0.00 0.00 30.42 3.96
2984 4994 4.701651 TCAGATCGGTCTTTTGATTGCATT 59.298 37.500 0.00 0.00 30.42 3.56
2985 4995 4.796830 CAGATCGGTCTTTTGATTGCATTG 59.203 41.667 0.00 0.00 30.42 2.82
2986 4996 3.574284 TCGGTCTTTTGATTGCATTGG 57.426 42.857 0.00 0.00 0.00 3.16
2987 4997 1.994779 CGGTCTTTTGATTGCATTGGC 59.005 47.619 0.00 0.00 41.68 4.52
2988 4998 2.353011 CGGTCTTTTGATTGCATTGGCT 60.353 45.455 0.00 0.00 41.91 4.75
2989 4999 3.119531 CGGTCTTTTGATTGCATTGGCTA 60.120 43.478 0.00 0.00 41.91 3.93
2990 5000 4.427312 GGTCTTTTGATTGCATTGGCTAG 58.573 43.478 0.00 0.00 41.91 3.42
2991 5001 4.158394 GGTCTTTTGATTGCATTGGCTAGA 59.842 41.667 0.00 0.00 41.91 2.43
2992 5002 5.338365 GTCTTTTGATTGCATTGGCTAGAG 58.662 41.667 0.00 0.00 41.91 2.43
2993 5003 3.788333 TTTGATTGCATTGGCTAGAGC 57.212 42.857 0.00 0.00 41.91 4.09
2994 5004 2.423446 TGATTGCATTGGCTAGAGCA 57.577 45.000 3.54 0.00 44.36 4.26
2995 5005 2.940158 TGATTGCATTGGCTAGAGCAT 58.060 42.857 3.54 0.00 44.36 3.79
2996 5006 2.621526 TGATTGCATTGGCTAGAGCATG 59.378 45.455 3.54 0.90 44.36 4.06
2997 5007 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
2998 5008 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
2999 5009 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
3000 5010 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
3001 5011 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
3002 5012 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
3003 5013 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
3004 5014 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
3005 5015 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
3006 5016 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
3018 5028 5.491070 TGCACTTCTACAACTAAGATGCAT 58.509 37.500 0.00 0.00 36.13 3.96
3152 5274 5.690997 TTGTCATGTACGTAAAATTGGCA 57.309 34.783 0.00 0.00 0.00 4.92
3264 5386 6.199154 CGACAAACTTCGCTTGTGAGATATAT 59.801 38.462 0.00 0.00 37.14 0.86
3267 5389 9.378551 ACAAACTTCGCTTGTGAGATATATTTA 57.621 29.630 0.00 0.00 35.70 1.40
3383 5505 2.521547 CCATCTTTGGCCCTTCTCTT 57.478 50.000 0.00 0.00 35.85 2.85
3393 5515 4.104086 TGGCCCTTCTCTTCTTATCAAGA 58.896 43.478 0.00 0.00 35.26 3.02
3408 5530 3.340814 TCAAGAGAAACAGGAGGCATC 57.659 47.619 0.00 0.00 0.00 3.91
3435 5557 1.202371 TGCGCGGTATAACCAAGAGAG 60.202 52.381 8.83 0.00 38.47 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 149 7.032580 CGCCTTATTCCAACATTACAATTTCA 58.967 34.615 0.00 0.00 0.00 2.69
172 175 3.346315 CACCATCCAAGCACAATGTAGA 58.654 45.455 0.00 0.00 0.00 2.59
175 178 0.604578 GCACCATCCAAGCACAATGT 59.395 50.000 0.00 0.00 0.00 2.71
192 195 6.166984 TCCAAGGTGACAATTTATTTTGCA 57.833 33.333 0.00 0.00 0.00 4.08
210 213 6.376299 TGGAGATTGTTGAGATTTGATCCAAG 59.624 38.462 0.00 0.00 30.50 3.61
245 258 3.942130 ACAGGCTAGCAAATTTGGTTC 57.058 42.857 26.32 17.88 39.88 3.62
247 260 4.301072 TCTACAGGCTAGCAAATTTGGT 57.699 40.909 24.79 24.79 42.29 3.67
248 261 4.439289 GCTTCTACAGGCTAGCAAATTTGG 60.439 45.833 18.24 4.56 33.88 3.28
249 262 4.156556 TGCTTCTACAGGCTAGCAAATTTG 59.843 41.667 18.24 14.03 40.39 2.32
250 263 4.335416 TGCTTCTACAGGCTAGCAAATTT 58.665 39.130 18.24 0.00 40.39 1.82
251 264 3.955471 TGCTTCTACAGGCTAGCAAATT 58.045 40.909 18.24 0.00 40.39 1.82
252 265 3.634397 TGCTTCTACAGGCTAGCAAAT 57.366 42.857 18.24 2.91 40.39 2.32
253 266 3.417069 TTGCTTCTACAGGCTAGCAAA 57.583 42.857 18.24 3.82 46.98 3.68
257 270 6.690194 ATTCATTTTGCTTCTACAGGCTAG 57.310 37.500 0.00 0.00 0.00 3.42
263 276 8.243426 GTCATACCAATTCATTTTGCTTCTACA 58.757 33.333 0.00 0.00 0.00 2.74
292 305 9.570488 GAAGTACACAAAGGTCTAGTAACTATG 57.430 37.037 0.00 0.00 0.00 2.23
293 306 8.747471 GGAAGTACACAAAGGTCTAGTAACTAT 58.253 37.037 0.00 0.00 0.00 2.12
295 308 6.781507 AGGAAGTACACAAAGGTCTAGTAACT 59.218 38.462 0.00 0.00 0.00 2.24
356 369 1.580942 CATCTGGCAAACCGTGTGG 59.419 57.895 0.00 0.00 39.70 4.17
424 437 7.609760 AAATCACGTCAATAGCACTAATTGA 57.390 32.000 0.00 0.00 32.55 2.57
492 505 1.730612 GTGACTTTTCGGGTCGGAATC 59.269 52.381 0.00 0.00 36.58 2.52
519 532 3.450578 ACTAACTGTTTTCTCGCGTTCA 58.549 40.909 5.77 0.00 0.00 3.18
701 1001 4.046938 ACTACGTATGAGACCTTGCATG 57.953 45.455 0.00 0.00 0.00 4.06
787 1087 2.172505 ACCATCCGAGGAATATGCAACA 59.827 45.455 0.00 0.00 0.00 3.33
834 1134 3.006940 TCAACAAACGTTTCTCTGCACT 58.993 40.909 11.37 0.00 0.00 4.40
850 1150 3.830178 TGTCCTTCGACCTAATCTCAACA 59.170 43.478 0.00 0.00 38.32 3.33
851 1151 4.451629 TGTCCTTCGACCTAATCTCAAC 57.548 45.455 0.00 0.00 38.32 3.18
1041 1342 0.897621 TGAGGCGCTTGAGATGAGAA 59.102 50.000 7.64 0.00 0.00 2.87
1083 1384 1.124780 TTGGAAGGACGAGGTTGTGA 58.875 50.000 0.00 0.00 0.00 3.58
1084 1385 2.185004 ATTGGAAGGACGAGGTTGTG 57.815 50.000 0.00 0.00 0.00 3.33
1401 3167 2.817423 GCCCGAGCGCTCAAGAATG 61.817 63.158 34.69 18.22 0.00 2.67
1476 3242 2.680913 GGCGCGTGCTTCATCAAGT 61.681 57.895 21.89 0.00 42.25 3.16
1995 3762 6.367422 CCTTAGCGACATCCATAAGATCTTTC 59.633 42.308 14.36 2.10 30.59 2.62
2029 3796 3.502211 CCGGTTGTCATTATATTGGCCTC 59.498 47.826 3.32 0.00 0.00 4.70
2430 4197 1.143684 CTAACCCAGGGTCCATCCATG 59.856 57.143 13.17 0.00 46.30 3.66
2688 4698 7.441903 AATTTATGGCCAAATCCTCAGAATT 57.558 32.000 10.96 3.44 0.00 2.17
2694 4704 7.955918 ACTTCATAATTTATGGCCAAATCCTC 58.044 34.615 10.96 0.00 36.81 3.71
2735 4745 6.129393 GCAGCACATTATACGTCAACATTAG 58.871 40.000 0.00 0.00 0.00 1.73
2736 4746 5.007234 GGCAGCACATTATACGTCAACATTA 59.993 40.000 0.00 0.00 0.00 1.90
2737 4747 4.201910 GGCAGCACATTATACGTCAACATT 60.202 41.667 0.00 0.00 0.00 2.71
2738 4748 3.312421 GGCAGCACATTATACGTCAACAT 59.688 43.478 0.00 0.00 0.00 2.71
2739 4749 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
2740 4750 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
2741 4751 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
2742 4752 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
2743 4753 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
2744 4754 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
2745 4755 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
2746 4756 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
2747 4757 5.011125 GGAAGAGACTAGGCAGCACATTATA 59.989 44.000 0.00 0.00 0.00 0.98
2748 4758 4.202305 GGAAGAGACTAGGCAGCACATTAT 60.202 45.833 0.00 0.00 0.00 1.28
2749 4759 3.133003 GGAAGAGACTAGGCAGCACATTA 59.867 47.826 0.00 0.00 0.00 1.90
2750 4760 2.093235 GGAAGAGACTAGGCAGCACATT 60.093 50.000 0.00 0.00 0.00 2.71
2751 4761 1.484240 GGAAGAGACTAGGCAGCACAT 59.516 52.381 0.00 0.00 0.00 3.21
2752 4762 0.898320 GGAAGAGACTAGGCAGCACA 59.102 55.000 0.00 0.00 0.00 4.57
2753 4763 0.898320 TGGAAGAGACTAGGCAGCAC 59.102 55.000 0.00 0.00 0.00 4.40
2754 4764 1.759445 GATGGAAGAGACTAGGCAGCA 59.241 52.381 0.00 0.00 0.00 4.41
2755 4765 1.759445 TGATGGAAGAGACTAGGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
2756 4766 2.364970 CCTGATGGAAGAGACTAGGCAG 59.635 54.545 0.00 0.00 34.57 4.85
2757 4767 2.292521 ACCTGATGGAAGAGACTAGGCA 60.293 50.000 0.00 0.00 37.04 4.75
2758 4768 2.364002 GACCTGATGGAAGAGACTAGGC 59.636 54.545 0.00 0.00 37.04 3.93
2759 4769 2.621055 CGACCTGATGGAAGAGACTAGG 59.379 54.545 0.00 0.00 37.04 3.02
2760 4770 2.621055 CCGACCTGATGGAAGAGACTAG 59.379 54.545 0.00 0.00 37.04 2.57
2761 4771 2.025226 ACCGACCTGATGGAAGAGACTA 60.025 50.000 0.00 0.00 37.04 2.59
2762 4772 1.272760 ACCGACCTGATGGAAGAGACT 60.273 52.381 0.00 0.00 37.04 3.24
2763 4773 1.135333 GACCGACCTGATGGAAGAGAC 59.865 57.143 0.00 0.00 37.04 3.36
2764 4774 1.006043 AGACCGACCTGATGGAAGAGA 59.994 52.381 0.00 0.00 37.04 3.10
2765 4775 1.479709 AGACCGACCTGATGGAAGAG 58.520 55.000 0.00 0.00 37.04 2.85
2766 4776 1.938585 AAGACCGACCTGATGGAAGA 58.061 50.000 0.00 0.00 37.04 2.87
2767 4777 2.744202 CAAAAGACCGACCTGATGGAAG 59.256 50.000 0.00 0.00 37.04 3.46
2768 4778 2.552155 CCAAAAGACCGACCTGATGGAA 60.552 50.000 0.00 0.00 37.04 3.53
2769 4779 1.003118 CCAAAAGACCGACCTGATGGA 59.997 52.381 0.00 0.00 37.04 3.41
2770 4780 1.271379 ACCAAAAGACCGACCTGATGG 60.271 52.381 0.00 0.00 39.83 3.51
2771 4781 2.185004 ACCAAAAGACCGACCTGATG 57.815 50.000 0.00 0.00 0.00 3.07
2772 4782 2.504367 CAACCAAAAGACCGACCTGAT 58.496 47.619 0.00 0.00 0.00 2.90
2773 4783 1.961793 CAACCAAAAGACCGACCTGA 58.038 50.000 0.00 0.00 0.00 3.86
2774 4784 0.310854 GCAACCAAAAGACCGACCTG 59.689 55.000 0.00 0.00 0.00 4.00
2775 4785 0.106918 TGCAACCAAAAGACCGACCT 60.107 50.000 0.00 0.00 0.00 3.85
2776 4786 0.958822 ATGCAACCAAAAGACCGACC 59.041 50.000 0.00 0.00 0.00 4.79
2777 4787 2.393764 CAATGCAACCAAAAGACCGAC 58.606 47.619 0.00 0.00 0.00 4.79
2778 4788 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
2779 4789 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
2780 4790 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
2781 4791 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
2782 4792 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
2783 4793 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
2784 4794 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
2785 4795 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
2786 4796 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
2787 4797 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
2788 4798 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
2789 4799 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
2790 4800 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
2791 4801 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
2792 4802 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
2793 4803 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
2794 4804 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
2795 4805 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
2796 4806 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
2797 4807 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
2798 4808 3.170791 TGTAGAAGTGCATGCTCTAGC 57.829 47.619 21.70 16.29 42.50 3.42
2799 4809 4.056740 CCATGTAGAAGTGCATGCTCTAG 58.943 47.826 21.70 7.70 43.45 2.43
2800 4810 3.452264 ACCATGTAGAAGTGCATGCTCTA 59.548 43.478 21.70 15.62 43.45 2.43
2801 4811 2.238144 ACCATGTAGAAGTGCATGCTCT 59.762 45.455 20.33 18.23 43.45 4.09
2802 4812 2.636830 ACCATGTAGAAGTGCATGCTC 58.363 47.619 20.33 15.94 43.45 4.26
2803 4813 2.795231 ACCATGTAGAAGTGCATGCT 57.205 45.000 20.33 0.00 43.45 3.79
2804 4814 4.129380 TGATACCATGTAGAAGTGCATGC 58.871 43.478 11.82 11.82 43.45 4.06
2805 4815 5.604565 TCTGATACCATGTAGAAGTGCATG 58.395 41.667 0.00 0.00 44.17 4.06
2806 4816 5.741383 GCTCTGATACCATGTAGAAGTGCAT 60.741 44.000 0.00 0.00 0.00 3.96
2807 4817 4.442052 GCTCTGATACCATGTAGAAGTGCA 60.442 45.833 0.00 0.00 0.00 4.57
2808 4818 4.054671 GCTCTGATACCATGTAGAAGTGC 58.945 47.826 0.00 0.00 0.00 4.40
2809 4819 4.100035 TGGCTCTGATACCATGTAGAAGTG 59.900 45.833 0.00 0.00 0.00 3.16
2810 4820 4.290093 TGGCTCTGATACCATGTAGAAGT 58.710 43.478 0.00 0.00 0.00 3.01
2811 4821 4.944619 TGGCTCTGATACCATGTAGAAG 57.055 45.455 0.00 0.00 0.00 2.85
2812 4822 4.962362 TCTTGGCTCTGATACCATGTAGAA 59.038 41.667 10.55 0.00 35.42 2.10
2813 4823 4.546674 TCTTGGCTCTGATACCATGTAGA 58.453 43.478 10.55 4.92 35.42 2.59
2814 4824 4.262377 CCTCTTGGCTCTGATACCATGTAG 60.262 50.000 10.55 3.17 35.42 2.74
2815 4825 3.643320 CCTCTTGGCTCTGATACCATGTA 59.357 47.826 10.55 0.00 35.42 2.29
2816 4826 2.437281 CCTCTTGGCTCTGATACCATGT 59.563 50.000 10.55 0.00 35.42 3.21
2817 4827 2.437281 ACCTCTTGGCTCTGATACCATG 59.563 50.000 0.91 4.05 35.42 3.66
2818 4828 2.703007 GACCTCTTGGCTCTGATACCAT 59.297 50.000 0.91 0.00 35.42 3.55
2819 4829 2.111384 GACCTCTTGGCTCTGATACCA 58.889 52.381 0.00 0.00 36.63 3.25
2820 4830 2.364002 GAGACCTCTTGGCTCTGATACC 59.636 54.545 0.00 0.00 35.26 2.73
2821 4831 2.034053 CGAGACCTCTTGGCTCTGATAC 59.966 54.545 0.00 0.00 35.66 2.24
2822 4832 2.092375 TCGAGACCTCTTGGCTCTGATA 60.092 50.000 0.00 0.00 35.66 2.15
2823 4833 1.110442 CGAGACCTCTTGGCTCTGAT 58.890 55.000 0.00 0.00 35.66 2.90
2824 4834 0.038310 TCGAGACCTCTTGGCTCTGA 59.962 55.000 0.00 0.00 35.66 3.27
2825 4835 0.455410 CTCGAGACCTCTTGGCTCTG 59.545 60.000 6.58 0.00 35.66 3.35
2826 4836 0.039035 ACTCGAGACCTCTTGGCTCT 59.961 55.000 21.68 0.00 35.66 4.09
2827 4837 0.892063 AACTCGAGACCTCTTGGCTC 59.108 55.000 21.68 0.00 36.63 4.70
2828 4838 0.892063 GAACTCGAGACCTCTTGGCT 59.108 55.000 21.68 0.00 36.63 4.75
2829 4839 0.603569 TGAACTCGAGACCTCTTGGC 59.396 55.000 21.68 0.00 36.63 4.52
2830 4840 2.558795 TCTTGAACTCGAGACCTCTTGG 59.441 50.000 21.68 7.09 39.83 3.61
2831 4841 3.570559 GTCTTGAACTCGAGACCTCTTG 58.429 50.000 21.68 9.21 46.74 3.02
2832 4842 3.926821 GTCTTGAACTCGAGACCTCTT 57.073 47.619 21.68 1.43 46.74 2.85
2842 4852 1.376037 CCAGCCGGGTCTTGAACTC 60.376 63.158 1.27 0.00 0.00 3.01
2843 4853 2.750350 CCAGCCGGGTCTTGAACT 59.250 61.111 1.27 0.00 0.00 3.01
2844 4854 3.056328 GCCAGCCGGGTCTTGAAC 61.056 66.667 1.27 0.00 39.65 3.18
2845 4855 4.697756 CGCCAGCCGGGTCTTGAA 62.698 66.667 1.27 0.00 39.65 2.69
2851 4861 3.929334 TTAATTGCGCCAGCCGGGT 62.929 57.895 4.18 0.00 44.33 5.28
2852 4862 2.015227 ATTTAATTGCGCCAGCCGGG 62.015 55.000 4.18 0.00 44.33 5.73
2853 4863 0.179113 AATTTAATTGCGCCAGCCGG 60.179 50.000 4.18 0.00 44.33 6.13
2854 4864 0.922717 CAATTTAATTGCGCCAGCCG 59.077 50.000 4.18 0.00 44.33 5.52
2863 4873 4.091800 CGAAAGTGGGCTGCAATTTAATTG 59.908 41.667 12.84 12.84 43.06 2.32
2864 4874 4.244862 CGAAAGTGGGCTGCAATTTAATT 58.755 39.130 0.50 0.00 0.00 1.40
2865 4875 3.368323 CCGAAAGTGGGCTGCAATTTAAT 60.368 43.478 0.50 0.00 0.00 1.40
2866 4876 2.029470 CCGAAAGTGGGCTGCAATTTAA 60.029 45.455 0.50 0.00 0.00 1.52
2867 4877 1.543802 CCGAAAGTGGGCTGCAATTTA 59.456 47.619 0.50 0.00 0.00 1.40
2868 4878 0.318120 CCGAAAGTGGGCTGCAATTT 59.682 50.000 0.50 0.00 0.00 1.82
2869 4879 0.827507 ACCGAAAGTGGGCTGCAATT 60.828 50.000 0.50 0.00 0.00 2.32
2870 4880 1.228552 ACCGAAAGTGGGCTGCAAT 60.229 52.632 0.50 0.00 0.00 3.56
2871 4881 1.896660 GACCGAAAGTGGGCTGCAA 60.897 57.895 0.50 0.00 32.64 4.08
2872 4882 2.281484 GACCGAAAGTGGGCTGCA 60.281 61.111 0.50 0.00 32.64 4.41
2873 4883 3.056328 GGACCGAAAGTGGGCTGC 61.056 66.667 0.00 0.00 37.14 5.25
2874 4884 1.966451 GTGGACCGAAAGTGGGCTG 60.966 63.158 0.00 0.00 37.14 4.85
2875 4885 2.430367 GTGGACCGAAAGTGGGCT 59.570 61.111 0.00 0.00 37.14 5.19
2876 4886 3.047877 CGTGGACCGAAAGTGGGC 61.048 66.667 0.00 0.00 39.56 5.36
2877 4887 0.816421 AAACGTGGACCGAAAGTGGG 60.816 55.000 0.00 0.00 40.70 4.61
2878 4888 1.796459 CTAAACGTGGACCGAAAGTGG 59.204 52.381 0.00 0.00 40.70 4.00
2879 4889 1.796459 CCTAAACGTGGACCGAAAGTG 59.204 52.381 0.00 0.00 40.70 3.16
2880 4890 1.875157 GCCTAAACGTGGACCGAAAGT 60.875 52.381 0.00 0.00 40.70 2.66
2881 4891 0.794473 GCCTAAACGTGGACCGAAAG 59.206 55.000 0.00 0.00 40.70 2.62
2882 4892 0.603439 GGCCTAAACGTGGACCGAAA 60.603 55.000 0.00 0.00 40.70 3.46
2883 4893 1.004679 GGCCTAAACGTGGACCGAA 60.005 57.895 0.00 0.00 40.70 4.30
2884 4894 1.909781 AGGCCTAAACGTGGACCGA 60.910 57.895 1.29 0.00 40.70 4.69
2885 4895 1.740296 CAGGCCTAAACGTGGACCG 60.740 63.158 3.98 0.00 44.03 4.79
2886 4896 0.391263 CTCAGGCCTAAACGTGGACC 60.391 60.000 3.98 0.00 31.51 4.46
2887 4897 0.391263 CCTCAGGCCTAAACGTGGAC 60.391 60.000 3.98 0.00 0.00 4.02
2888 4898 1.550130 CCCTCAGGCCTAAACGTGGA 61.550 60.000 3.98 0.00 0.00 4.02
2889 4899 1.078426 CCCTCAGGCCTAAACGTGG 60.078 63.158 3.98 3.09 0.00 4.94
2890 4900 0.108138 CTCCCTCAGGCCTAAACGTG 60.108 60.000 3.98 0.00 0.00 4.49
2891 4901 1.900545 GCTCCCTCAGGCCTAAACGT 61.901 60.000 3.98 0.00 0.00 3.99
2892 4902 1.153349 GCTCCCTCAGGCCTAAACG 60.153 63.158 3.98 0.00 0.00 3.60
2893 4903 1.224870 GGCTCCCTCAGGCCTAAAC 59.775 63.158 3.98 0.00 44.48 2.01
2894 4904 3.741325 GGCTCCCTCAGGCCTAAA 58.259 61.111 3.98 0.00 44.48 1.85
2900 4910 3.314331 ACGTGTGGCTCCCTCAGG 61.314 66.667 0.00 4.93 38.38 3.86
2901 4911 2.047844 CACGTGTGGCTCCCTCAG 60.048 66.667 7.58 0.00 0.00 3.35
2902 4912 2.523168 TCACGTGTGGCTCCCTCA 60.523 61.111 16.51 0.00 0.00 3.86
2903 4913 2.262915 CTCACGTGTGGCTCCCTC 59.737 66.667 16.51 0.00 0.00 4.30
2904 4914 3.314331 CCTCACGTGTGGCTCCCT 61.314 66.667 22.53 0.00 0.00 4.20
2905 4915 4.394712 CCCTCACGTGTGGCTCCC 62.395 72.222 27.37 0.00 0.00 4.30
2906 4916 4.394712 CCCCTCACGTGTGGCTCC 62.395 72.222 27.37 0.00 0.00 4.70
2907 4917 4.394712 CCCCCTCACGTGTGGCTC 62.395 72.222 27.37 0.00 0.00 4.70
2908 4918 4.954118 TCCCCCTCACGTGTGGCT 62.954 66.667 27.37 0.00 0.00 4.75
2909 4919 4.394712 CTCCCCCTCACGTGTGGC 62.395 72.222 27.37 0.00 0.00 5.01
2910 4920 2.923035 ACTCCCCCTCACGTGTGG 60.923 66.667 26.15 26.15 0.00 4.17
2911 4921 2.040009 AACACTCCCCCTCACGTGTG 62.040 60.000 16.51 13.39 40.19 3.82
2912 4922 1.764854 AACACTCCCCCTCACGTGT 60.765 57.895 16.51 0.00 41.92 4.49
2913 4923 1.301716 CAACACTCCCCCTCACGTG 60.302 63.158 9.94 9.94 0.00 4.49
2914 4924 1.458777 TCAACACTCCCCCTCACGT 60.459 57.895 0.00 0.00 0.00 4.49
2915 4925 1.004918 GTCAACACTCCCCCTCACG 60.005 63.158 0.00 0.00 0.00 4.35
2916 4926 1.004918 CGTCAACACTCCCCCTCAC 60.005 63.158 0.00 0.00 0.00 3.51
2917 4927 0.178955 TACGTCAACACTCCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
2918 4928 1.192428 ATACGTCAACACTCCCCCTC 58.808 55.000 0.00 0.00 0.00 4.30
2919 4929 2.537633 TATACGTCAACACTCCCCCT 57.462 50.000 0.00 0.00 0.00 4.79
2920 4930 3.832615 ATTATACGTCAACACTCCCCC 57.167 47.619 0.00 0.00 0.00 5.40
2921 4931 4.689345 GCATATTATACGTCAACACTCCCC 59.311 45.833 0.00 0.00 0.00 4.81
2922 4932 5.405571 CAGCATATTATACGTCAACACTCCC 59.594 44.000 0.00 0.00 0.00 4.30
2923 4933 5.107453 GCAGCATATTATACGTCAACACTCC 60.107 44.000 0.00 0.00 0.00 3.85
2924 4934 5.107453 GGCAGCATATTATACGTCAACACTC 60.107 44.000 0.00 0.00 0.00 3.51
2925 4935 4.750098 GGCAGCATATTATACGTCAACACT 59.250 41.667 0.00 0.00 0.00 3.55
2926 4936 4.750098 AGGCAGCATATTATACGTCAACAC 59.250 41.667 0.00 0.00 0.00 3.32
2927 4937 4.956085 AGGCAGCATATTATACGTCAACA 58.044 39.130 0.00 0.00 0.00 3.33
2928 4938 6.157211 ACTAGGCAGCATATTATACGTCAAC 58.843 40.000 0.00 0.00 0.00 3.18
2929 4939 6.208797 AGACTAGGCAGCATATTATACGTCAA 59.791 38.462 0.00 0.00 0.00 3.18
2930 4940 5.710567 AGACTAGGCAGCATATTATACGTCA 59.289 40.000 0.00 0.00 0.00 4.35
2931 4941 6.094325 AGAGACTAGGCAGCATATTATACGTC 59.906 42.308 0.00 0.00 0.00 4.34
2932 4942 5.946972 AGAGACTAGGCAGCATATTATACGT 59.053 40.000 0.00 0.00 0.00 3.57
2933 4943 6.443934 AGAGACTAGGCAGCATATTATACG 57.556 41.667 0.00 0.00 0.00 3.06
2934 4944 7.093727 TGGAAGAGACTAGGCAGCATATTATAC 60.094 40.741 0.00 0.00 0.00 1.47
2935 4945 6.954102 TGGAAGAGACTAGGCAGCATATTATA 59.046 38.462 0.00 0.00 0.00 0.98
2936 4946 5.782331 TGGAAGAGACTAGGCAGCATATTAT 59.218 40.000 0.00 0.00 0.00 1.28
2937 4947 5.147767 TGGAAGAGACTAGGCAGCATATTA 58.852 41.667 0.00 0.00 0.00 0.98
2938 4948 3.969976 TGGAAGAGACTAGGCAGCATATT 59.030 43.478 0.00 0.00 0.00 1.28
2939 4949 3.581101 TGGAAGAGACTAGGCAGCATAT 58.419 45.455 0.00 0.00 0.00 1.78
2940 4950 3.032265 TGGAAGAGACTAGGCAGCATA 57.968 47.619 0.00 0.00 0.00 3.14
2941 4951 1.871418 TGGAAGAGACTAGGCAGCAT 58.129 50.000 0.00 0.00 0.00 3.79
2942 4952 1.759445 GATGGAAGAGACTAGGCAGCA 59.241 52.381 0.00 0.00 0.00 4.41
2943 4953 1.759445 TGATGGAAGAGACTAGGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
2944 4954 3.295093 TCTGATGGAAGAGACTAGGCAG 58.705 50.000 0.00 0.00 0.00 4.85
2945 4955 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
2946 4956 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
2947 4957 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
2948 4958 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
2949 4959 4.138290 GACCGATCTGATGGAAGAGACTA 58.862 47.826 11.46 0.00 0.00 2.59
2950 4960 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
2951 4961 2.955660 AGACCGATCTGATGGAAGAGAC 59.044 50.000 11.46 0.00 32.29 3.36
2952 4962 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
2953 4963 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
2954 4964 4.222810 TCAAAAGACCGATCTGATGGAAGA 59.777 41.667 11.46 0.00 34.48 2.87
2955 4965 4.507710 TCAAAAGACCGATCTGATGGAAG 58.492 43.478 11.46 0.00 34.48 3.46
2956 4966 4.551702 TCAAAAGACCGATCTGATGGAA 57.448 40.909 11.46 0.00 34.48 3.53
2957 4967 4.760530 ATCAAAAGACCGATCTGATGGA 57.239 40.909 11.46 0.00 34.48 3.41
2958 4968 4.497006 GCAATCAAAAGACCGATCTGATGG 60.497 45.833 0.00 0.00 34.48 3.51
2959 4969 4.095334 TGCAATCAAAAGACCGATCTGATG 59.905 41.667 0.00 0.00 34.48 3.07
2960 4970 4.264253 TGCAATCAAAAGACCGATCTGAT 58.736 39.130 0.00 0.00 34.48 2.90
2961 4971 3.673902 TGCAATCAAAAGACCGATCTGA 58.326 40.909 0.00 0.00 34.48 3.27
2962 4972 4.627611 ATGCAATCAAAAGACCGATCTG 57.372 40.909 0.00 0.00 34.48 2.90
2963 4973 4.142315 CCAATGCAATCAAAAGACCGATCT 60.142 41.667 0.00 0.00 36.42 2.75
2964 4974 4.107622 CCAATGCAATCAAAAGACCGATC 58.892 43.478 0.00 0.00 0.00 3.69
2965 4975 3.676873 GCCAATGCAATCAAAAGACCGAT 60.677 43.478 0.00 0.00 37.47 4.18
2966 4976 2.352617 GCCAATGCAATCAAAAGACCGA 60.353 45.455 0.00 0.00 37.47 4.69
2967 4977 1.994779 GCCAATGCAATCAAAAGACCG 59.005 47.619 0.00 0.00 37.47 4.79
2968 4978 3.323751 AGCCAATGCAATCAAAAGACC 57.676 42.857 0.00 0.00 41.13 3.85
2969 4979 5.314923 TCTAGCCAATGCAATCAAAAGAC 57.685 39.130 0.00 0.00 41.13 3.01
2970 4980 4.142315 GCTCTAGCCAATGCAATCAAAAGA 60.142 41.667 0.00 0.00 41.13 2.52
2971 4981 4.110482 GCTCTAGCCAATGCAATCAAAAG 58.890 43.478 0.00 0.00 41.13 2.27
2972 4982 3.510753 TGCTCTAGCCAATGCAATCAAAA 59.489 39.130 0.00 0.00 41.13 2.44
2973 4983 3.090790 TGCTCTAGCCAATGCAATCAAA 58.909 40.909 0.00 0.00 41.13 2.69
2974 4984 2.725637 TGCTCTAGCCAATGCAATCAA 58.274 42.857 0.00 0.00 41.13 2.57
2975 4985 2.423446 TGCTCTAGCCAATGCAATCA 57.577 45.000 0.00 0.00 41.13 2.57
2976 4986 2.607282 GCATGCTCTAGCCAATGCAATC 60.607 50.000 11.37 0.00 44.74 2.67
2977 4987 1.340248 GCATGCTCTAGCCAATGCAAT 59.660 47.619 11.37 0.00 44.74 3.56
2978 4988 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
2979 4989 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
2980 4990 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
2981 4991 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
2982 4992 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
2983 4993 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
2984 4994 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
2985 4995 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
2986 4996 3.170791 TGTAGAAGTGCATGCTCTAGC 57.829 47.619 21.70 16.29 42.50 3.42
2987 4997 4.753233 AGTTGTAGAAGTGCATGCTCTAG 58.247 43.478 21.70 0.00 0.00 2.43
2988 4998 4.808414 AGTTGTAGAAGTGCATGCTCTA 57.192 40.909 21.70 15.62 0.00 2.43
2989 4999 3.692257 AGTTGTAGAAGTGCATGCTCT 57.308 42.857 20.33 18.23 0.00 4.09
2990 5000 5.171476 TCTTAGTTGTAGAAGTGCATGCTC 58.829 41.667 20.33 15.94 0.00 4.26
2991 5001 5.152623 TCTTAGTTGTAGAAGTGCATGCT 57.847 39.130 20.33 0.00 0.00 3.79
2992 5002 5.728898 GCATCTTAGTTGTAGAAGTGCATGC 60.729 44.000 11.82 11.82 33.60 4.06
2993 5003 5.352293 TGCATCTTAGTTGTAGAAGTGCATG 59.648 40.000 0.00 0.00 36.10 4.06
2994 5004 5.491070 TGCATCTTAGTTGTAGAAGTGCAT 58.509 37.500 0.00 0.00 36.10 3.96
2995 5005 4.893608 TGCATCTTAGTTGTAGAAGTGCA 58.106 39.130 0.00 0.00 37.36 4.57
2996 5006 5.582269 TGATGCATCTTAGTTGTAGAAGTGC 59.418 40.000 26.32 0.00 33.80 4.40
2997 5007 7.783090 ATGATGCATCTTAGTTGTAGAAGTG 57.217 36.000 26.32 0.00 0.00 3.16
3004 5014 9.783081 TGTCATAATATGATGCATCTTAGTTGT 57.217 29.630 26.32 13.06 42.04 3.32
3124 5134 9.186323 CCAATTTTACGTACATGACAAATCAAA 57.814 29.630 0.00 0.00 38.69 2.69
3125 5135 7.327275 GCCAATTTTACGTACATGACAAATCAA 59.673 33.333 0.00 0.00 38.69 2.57
3127 5137 6.804295 TGCCAATTTTACGTACATGACAAATC 59.196 34.615 0.00 0.00 0.00 2.17
3128 5138 6.682746 TGCCAATTTTACGTACATGACAAAT 58.317 32.000 0.00 0.00 0.00 2.32
3129 5139 6.073327 TGCCAATTTTACGTACATGACAAA 57.927 33.333 0.00 0.00 0.00 2.83
3131 5141 5.690997 TTGCCAATTTTACGTACATGACA 57.309 34.783 0.00 0.00 0.00 3.58
3132 5142 7.469260 AGTATTGCCAATTTTACGTACATGAC 58.531 34.615 0.00 0.00 0.00 3.06
3134 5144 9.944663 ATTAGTATTGCCAATTTTACGTACATG 57.055 29.630 0.00 0.00 0.00 3.21
3136 5146 9.386010 AGATTAGTATTGCCAATTTTACGTACA 57.614 29.630 0.00 0.00 0.00 2.90
3291 5413 5.404946 CAGTTGTTTTCATGCAGGGATTAG 58.595 41.667 0.00 0.00 0.00 1.73
3342 5464 5.944007 TGGCTAGGGTTGAAAATTTCTAGAC 59.056 40.000 7.29 9.72 33.87 2.59
3344 5466 6.830838 AGATGGCTAGGGTTGAAAATTTCTAG 59.169 38.462 7.29 1.59 0.00 2.43
3346 5468 5.583932 AGATGGCTAGGGTTGAAAATTTCT 58.416 37.500 7.29 0.00 0.00 2.52
3383 5505 4.532126 TGCCTCCTGTTTCTCTTGATAAGA 59.468 41.667 0.00 0.00 35.87 2.10
3393 5515 1.078143 GGCGATGCCTCCTGTTTCT 60.078 57.895 0.00 0.00 46.69 2.52
3435 5557 0.535335 TGGGTCTGCTATCCACGTTC 59.465 55.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.