Multiple sequence alignment - TraesCS7D01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G100600 chr7D 100.000 3529 0 0 1 3529 60303939 60300411 0.000000e+00 6517.0
1 TraesCS7D01G100600 chr7D 97.674 430 9 1 1 430 60324940 60324512 0.000000e+00 737.0
2 TraesCS7D01G100600 chr7D 86.014 143 20 0 2732 2874 69393416 69393274 1.700000e-33 154.0
3 TraesCS7D01G100600 chr7A 91.791 2485 130 29 433 2872 64625839 64623384 0.000000e+00 3391.0
4 TraesCS7D01G100600 chr7A 92.399 671 28 8 2870 3529 64622062 64621404 0.000000e+00 935.0
5 TraesCS7D01G100600 chr7A 86.713 143 19 0 2732 2874 524701417 524701275 3.650000e-35 159.0
6 TraesCS7D01G100600 chr7B 92.665 2086 126 17 431 2493 2896254 2894173 0.000000e+00 2979.0
7 TraesCS7D01G100600 chr7B 91.786 767 44 5 2470 3226 2892718 2891961 0.000000e+00 1050.0
8 TraesCS7D01G100600 chr7B 91.787 621 39 3 2613 3223 2892964 2893582 0.000000e+00 854.0
9 TraesCS7D01G100600 chr2D 97.664 428 9 1 1 428 189558561 189558135 0.000000e+00 734.0
10 TraesCS7D01G100600 chr2D 96.977 430 12 1 1 430 189565417 189564989 0.000000e+00 721.0
11 TraesCS7D01G100600 chr2D 75.830 1415 248 61 1001 2386 560215900 560214551 1.790000e-177 632.0
12 TraesCS7D01G100600 chr4D 96.998 433 10 2 1 431 2085371 2085802 0.000000e+00 725.0
13 TraesCS7D01G100600 chr4D 96.330 436 12 3 1 433 113029468 113029902 0.000000e+00 713.0
14 TraesCS7D01G100600 chr4D 77.323 538 95 17 1009 1540 30518426 30518942 3.450000e-75 292.0
15 TraesCS7D01G100600 chr4D 78.261 483 84 14 1072 1549 30513947 30514413 1.240000e-74 291.0
16 TraesCS7D01G100600 chr4D 77.413 487 87 18 1072 1552 30557882 30557413 5.810000e-68 268.0
17 TraesCS7D01G100600 chr4D 95.455 66 3 0 3029 3094 348580009 348580074 4.820000e-19 106.0
18 TraesCS7D01G100600 chr3D 96.759 432 11 3 1 431 517685479 517685050 0.000000e+00 717.0
19 TraesCS7D01G100600 chr3D 86.897 145 19 0 2730 2874 87925998 87926142 2.820000e-36 163.0
20 TraesCS7D01G100600 chr1D 96.752 431 10 4 1 430 461394035 461394462 0.000000e+00 715.0
21 TraesCS7D01G100600 chr1D 96.536 433 11 2 1 430 442036951 442037382 0.000000e+00 713.0
22 TraesCS7D01G100600 chr1D 86.111 144 20 0 2731 2874 449595570 449595427 4.720000e-34 156.0
23 TraesCS7D01G100600 chr1D 93.939 66 4 0 3029 3094 28560801 28560736 2.240000e-17 100.0
24 TraesCS7D01G100600 chr5D 96.744 430 10 3 1 430 343299800 343299375 0.000000e+00 713.0
25 TraesCS7D01G100600 chr5D 84.783 92 12 2 433 523 324368491 324368581 1.350000e-14 91.6
26 TraesCS7D01G100600 chr5D 88.679 53 6 0 471 523 250386387 250386335 8.180000e-07 65.8
27 TraesCS7D01G100600 chr4A 78.586 495 83 16 1064 1552 572307649 572308126 4.430000e-79 305.0
28 TraesCS7D01G100600 chr4A 77.016 496 90 16 1072 1564 572506823 572506349 2.700000e-66 263.0
29 TraesCS7D01G100600 chr2B 72.204 1234 261 52 1185 2379 669052532 669051342 1.590000e-78 303.0
30 TraesCS7D01G100600 chr2B 72.078 1232 266 50 1185 2379 669094354 669093164 7.410000e-77 298.0
31 TraesCS7D01G100600 chr2B 80.970 268 39 9 2127 2393 656512688 656512944 5.970000e-48 202.0
32 TraesCS7D01G100600 chr1A 86.713 143 18 1 2732 2874 5197920 5198061 1.310000e-34 158.0
33 TraesCS7D01G100600 chr3B 86.207 145 19 1 2730 2874 104275538 104275395 4.720000e-34 156.0
34 TraesCS7D01G100600 chr5B 93.939 66 4 0 3029 3094 493170793 493170858 2.240000e-17 100.0
35 TraesCS7D01G100600 chr5B 85.870 92 11 2 433 523 375795927 375796017 2.900000e-16 97.1
36 TraesCS7D01G100600 chr6A 86.170 94 7 4 431 523 524296497 524296409 2.900000e-16 97.1
37 TraesCS7D01G100600 chr3A 93.846 65 3 1 3029 3093 97503089 97503152 2.900000e-16 97.1
38 TraesCS7D01G100600 chr3A 85.714 77 10 1 431 506 147523341 147523417 2.920000e-11 80.5
39 TraesCS7D01G100600 chrUn 100.000 29 0 0 495 523 30097346 30097374 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G100600 chr7D 60300411 60303939 3528 True 6517.0 6517 100.0000 1 3529 1 chr7D.!!$R1 3528
1 TraesCS7D01G100600 chr7A 64621404 64625839 4435 True 2163.0 3391 92.0950 433 3529 2 chr7A.!!$R2 3096
2 TraesCS7D01G100600 chr7B 2891961 2896254 4293 True 2014.5 2979 92.2255 431 3226 2 chr7B.!!$R1 2795
3 TraesCS7D01G100600 chr7B 2892964 2893582 618 False 854.0 854 91.7870 2613 3223 1 chr7B.!!$F1 610
4 TraesCS7D01G100600 chr2D 560214551 560215900 1349 True 632.0 632 75.8300 1001 2386 1 chr2D.!!$R3 1385
5 TraesCS7D01G100600 chr4D 30518426 30518942 516 False 292.0 292 77.3230 1009 1540 1 chr4D.!!$F3 531
6 TraesCS7D01G100600 chr2B 669051342 669052532 1190 True 303.0 303 72.2040 1185 2379 1 chr2B.!!$R1 1194
7 TraesCS7D01G100600 chr2B 669093164 669094354 1190 True 298.0 298 72.0780 1185 2379 1 chr2B.!!$R2 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.033601 ATGCACTCCCTCTCTCTCGT 60.034 55.0 0.0 0.0 0.00 4.18 F
363 364 0.039035 ACTCCCTCTCTCTCGTTGCT 59.961 55.0 0.0 0.0 0.00 3.91 F
366 367 0.383949 CCCTCTCTCTCGTTGCTAGC 59.616 60.0 8.1 8.1 0.00 3.42 F
1761 1815 0.535335 GGAGCATCAAGGACACGGTA 59.465 55.0 0.0 0.0 36.25 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2017 1.666872 GCAGTTGCCGAGGTACGTT 60.667 57.895 0.00 0.00 40.78 3.99 R
2441 2519 4.600692 TGACCATCTCGAGACAAGAAAA 57.399 40.909 19.30 0.00 0.00 2.29 R
2443 2521 3.574396 ACTTGACCATCTCGAGACAAGAA 59.426 43.478 33.15 17.67 38.30 2.52 R
2625 4186 0.534412 AGCTGAAGATGACACCTCCG 59.466 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.339093 GTGAGGGGGTTGGGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
24 25 4.066139 GGTTGGGAGGGCAGCCAT 62.066 66.667 15.19 5.81 0.00 4.40
25 26 2.689691 GGTTGGGAGGGCAGCCATA 61.690 63.158 15.19 0.00 0.00 2.74
26 27 1.453928 GTTGGGAGGGCAGCCATAC 60.454 63.158 15.19 6.82 0.00 2.39
27 28 2.689691 TTGGGAGGGCAGCCATACC 61.690 63.158 21.76 21.76 39.09 2.73
32 33 2.195956 GGGCAGCCATACCCTTCC 59.804 66.667 15.19 0.00 43.36 3.46
33 34 2.195956 GGCAGCCATACCCTTCCC 59.804 66.667 6.55 0.00 0.00 3.97
34 35 2.386935 GGCAGCCATACCCTTCCCT 61.387 63.158 6.55 0.00 0.00 4.20
35 36 1.615262 GCAGCCATACCCTTCCCTT 59.385 57.895 0.00 0.00 0.00 3.95
36 37 0.753111 GCAGCCATACCCTTCCCTTG 60.753 60.000 0.00 0.00 0.00 3.61
37 38 0.106519 CAGCCATACCCTTCCCTTGG 60.107 60.000 0.00 0.00 0.00 3.61
38 39 1.455773 GCCATACCCTTCCCTTGGC 60.456 63.158 0.00 0.00 45.31 4.52
39 40 1.152963 CCATACCCTTCCCTTGGCG 60.153 63.158 0.00 0.00 0.00 5.69
40 41 1.823899 CATACCCTTCCCTTGGCGC 60.824 63.158 0.00 0.00 0.00 6.53
41 42 2.305607 ATACCCTTCCCTTGGCGCA 61.306 57.895 10.83 0.00 0.00 6.09
42 43 2.270874 ATACCCTTCCCTTGGCGCAG 62.271 60.000 10.83 0.00 0.00 5.18
56 57 3.803162 GCAGCCCCCTTCCTCCTC 61.803 72.222 0.00 0.00 0.00 3.71
57 58 2.285668 CAGCCCCCTTCCTCCTCA 60.286 66.667 0.00 0.00 0.00 3.86
58 59 1.695597 CAGCCCCCTTCCTCCTCAT 60.696 63.158 0.00 0.00 0.00 2.90
59 60 0.400525 CAGCCCCCTTCCTCCTCATA 60.401 60.000 0.00 0.00 0.00 2.15
60 61 0.400670 AGCCCCCTTCCTCCTCATAC 60.401 60.000 0.00 0.00 0.00 2.39
61 62 0.694444 GCCCCCTTCCTCCTCATACA 60.694 60.000 0.00 0.00 0.00 2.29
62 63 2.047742 GCCCCCTTCCTCCTCATACAT 61.048 57.143 0.00 0.00 0.00 2.29
63 64 1.981495 CCCCCTTCCTCCTCATACATC 59.019 57.143 0.00 0.00 0.00 3.06
64 65 2.428484 CCCCCTTCCTCCTCATACATCT 60.428 54.545 0.00 0.00 0.00 2.90
65 66 2.903135 CCCCTTCCTCCTCATACATCTC 59.097 54.545 0.00 0.00 0.00 2.75
66 67 2.903135 CCCTTCCTCCTCATACATCTCC 59.097 54.545 0.00 0.00 0.00 3.71
67 68 3.439260 CCCTTCCTCCTCATACATCTCCT 60.439 52.174 0.00 0.00 0.00 3.69
68 69 3.831911 CCTTCCTCCTCATACATCTCCTC 59.168 52.174 0.00 0.00 0.00 3.71
69 70 3.534357 TCCTCCTCATACATCTCCTCC 57.466 52.381 0.00 0.00 0.00 4.30
70 71 2.166829 CCTCCTCATACATCTCCTCCG 58.833 57.143 0.00 0.00 0.00 4.63
71 72 2.489985 CCTCCTCATACATCTCCTCCGT 60.490 54.545 0.00 0.00 0.00 4.69
72 73 3.244946 CCTCCTCATACATCTCCTCCGTA 60.245 52.174 0.00 0.00 0.00 4.02
73 74 4.006989 CTCCTCATACATCTCCTCCGTAG 58.993 52.174 0.00 0.00 0.00 3.51
74 75 3.394940 TCCTCATACATCTCCTCCGTAGT 59.605 47.826 0.00 0.00 0.00 2.73
75 76 4.596212 TCCTCATACATCTCCTCCGTAGTA 59.404 45.833 0.00 0.00 0.00 1.82
76 77 4.938832 CCTCATACATCTCCTCCGTAGTAG 59.061 50.000 0.00 0.00 0.00 2.57
77 78 5.513441 CCTCATACATCTCCTCCGTAGTAGT 60.513 48.000 0.00 0.00 0.00 2.73
78 79 6.295745 CCTCATACATCTCCTCCGTAGTAGTA 60.296 46.154 0.00 0.00 0.00 1.82
79 80 6.699366 TCATACATCTCCTCCGTAGTAGTAG 58.301 44.000 0.00 0.00 0.00 2.57
80 81 6.269538 TCATACATCTCCTCCGTAGTAGTAGT 59.730 42.308 0.00 0.00 0.00 2.73
81 82 4.706035 ACATCTCCTCCGTAGTAGTAGTG 58.294 47.826 0.00 0.00 0.00 2.74
82 83 3.191078 TCTCCTCCGTAGTAGTAGTGC 57.809 52.381 0.00 0.00 0.00 4.40
83 84 2.770802 TCTCCTCCGTAGTAGTAGTGCT 59.229 50.000 0.00 0.00 0.00 4.40
84 85 3.199508 TCTCCTCCGTAGTAGTAGTGCTT 59.800 47.826 0.00 0.00 0.00 3.91
85 86 3.276857 TCCTCCGTAGTAGTAGTGCTTG 58.723 50.000 0.00 0.00 0.00 4.01
86 87 2.358267 CCTCCGTAGTAGTAGTGCTTGG 59.642 54.545 0.00 0.00 0.00 3.61
87 88 1.747355 TCCGTAGTAGTAGTGCTTGGC 59.253 52.381 0.00 0.00 0.00 4.52
88 89 1.533338 CCGTAGTAGTAGTGCTTGGCG 60.533 57.143 0.00 0.00 0.00 5.69
89 90 1.399440 CGTAGTAGTAGTGCTTGGCGA 59.601 52.381 0.00 0.00 0.00 5.54
90 91 2.159476 CGTAGTAGTAGTGCTTGGCGAA 60.159 50.000 0.00 0.00 0.00 4.70
91 92 2.656560 AGTAGTAGTGCTTGGCGAAG 57.343 50.000 3.77 3.77 0.00 3.79
104 105 4.082523 CGAAGCCCTGCCGGAGAA 62.083 66.667 5.05 0.00 0.00 2.87
105 106 2.436824 GAAGCCCTGCCGGAGAAC 60.437 66.667 5.05 0.00 0.00 3.01
106 107 3.978571 GAAGCCCTGCCGGAGAACC 62.979 68.421 5.05 0.00 0.00 3.62
109 110 4.760047 CCCTGCCGGAGAACCACG 62.760 72.222 5.05 0.00 35.59 4.94
110 111 3.691342 CCTGCCGGAGAACCACGA 61.691 66.667 5.05 0.00 35.59 4.35
111 112 2.125912 CTGCCGGAGAACCACGAG 60.126 66.667 5.05 0.00 35.59 4.18
112 113 4.373116 TGCCGGAGAACCACGAGC 62.373 66.667 5.05 0.00 35.59 5.03
113 114 4.070552 GCCGGAGAACCACGAGCT 62.071 66.667 5.05 0.00 35.59 4.09
114 115 2.182030 CCGGAGAACCACGAGCTC 59.818 66.667 2.73 2.73 35.59 4.09
115 116 2.182030 CGGAGAACCACGAGCTCC 59.818 66.667 8.47 0.00 43.73 4.70
116 117 2.636412 CGGAGAACCACGAGCTCCA 61.636 63.158 8.47 0.00 46.74 3.86
117 118 1.901085 GGAGAACCACGAGCTCCAT 59.099 57.895 8.47 0.00 45.89 3.41
118 119 0.250513 GGAGAACCACGAGCTCCATT 59.749 55.000 8.47 0.00 45.89 3.16
119 120 1.363744 GAGAACCACGAGCTCCATTG 58.636 55.000 8.47 2.84 0.00 2.82
120 121 0.674895 AGAACCACGAGCTCCATTGC 60.675 55.000 8.47 0.00 0.00 3.56
121 122 1.648467 GAACCACGAGCTCCATTGCC 61.648 60.000 8.47 0.00 0.00 4.52
122 123 2.046023 CCACGAGCTCCATTGCCA 60.046 61.111 8.47 0.00 0.00 4.92
123 124 2.401766 CCACGAGCTCCATTGCCAC 61.402 63.158 8.47 0.00 0.00 5.01
124 125 2.045926 ACGAGCTCCATTGCCACC 60.046 61.111 8.47 0.00 0.00 4.61
125 126 2.046023 CGAGCTCCATTGCCACCA 60.046 61.111 8.47 0.00 0.00 4.17
126 127 1.452651 CGAGCTCCATTGCCACCAT 60.453 57.895 8.47 0.00 0.00 3.55
127 128 1.721664 CGAGCTCCATTGCCACCATG 61.722 60.000 8.47 0.00 0.00 3.66
128 129 0.682209 GAGCTCCATTGCCACCATGT 60.682 55.000 0.87 0.00 0.00 3.21
129 130 0.682209 AGCTCCATTGCCACCATGTC 60.682 55.000 0.00 0.00 0.00 3.06
130 131 1.996786 GCTCCATTGCCACCATGTCG 61.997 60.000 0.00 0.00 0.00 4.35
131 132 0.677731 CTCCATTGCCACCATGTCGT 60.678 55.000 0.00 0.00 0.00 4.34
132 133 0.676466 TCCATTGCCACCATGTCGTC 60.676 55.000 0.00 0.00 0.00 4.20
133 134 0.959867 CCATTGCCACCATGTCGTCA 60.960 55.000 0.00 0.00 0.00 4.35
134 135 1.097232 CATTGCCACCATGTCGTCAT 58.903 50.000 0.00 0.00 34.21 3.06
142 143 1.719709 CATGTCGTCATGCTGCTGG 59.280 57.895 9.65 0.00 43.66 4.85
143 144 0.741927 CATGTCGTCATGCTGCTGGA 60.742 55.000 9.65 0.00 43.66 3.86
144 145 0.461516 ATGTCGTCATGCTGCTGGAG 60.462 55.000 0.00 0.00 32.51 3.86
145 146 1.079543 GTCGTCATGCTGCTGGAGT 60.080 57.895 0.00 0.00 0.00 3.85
146 147 0.671781 GTCGTCATGCTGCTGGAGTT 60.672 55.000 0.00 0.00 0.00 3.01
147 148 0.390340 TCGTCATGCTGCTGGAGTTC 60.390 55.000 0.00 0.00 0.00 3.01
148 149 0.390866 CGTCATGCTGCTGGAGTTCT 60.391 55.000 0.00 0.00 0.00 3.01
149 150 1.367659 GTCATGCTGCTGGAGTTCTC 58.632 55.000 0.00 0.00 0.00 2.87
150 151 0.251354 TCATGCTGCTGGAGTTCTCC 59.749 55.000 11.53 11.53 0.00 3.71
151 152 0.747283 CATGCTGCTGGAGTTCTCCC 60.747 60.000 15.20 2.85 0.00 4.30
152 153 0.913451 ATGCTGCTGGAGTTCTCCCT 60.913 55.000 15.20 0.00 0.00 4.20
153 154 1.220477 GCTGCTGGAGTTCTCCCTC 59.780 63.158 15.20 8.08 0.00 4.30
154 155 1.548357 GCTGCTGGAGTTCTCCCTCA 61.548 60.000 15.20 11.60 32.91 3.86
155 156 0.979665 CTGCTGGAGTTCTCCCTCAA 59.020 55.000 15.20 0.00 32.91 3.02
156 157 0.687354 TGCTGGAGTTCTCCCTCAAC 59.313 55.000 15.20 2.58 32.91 3.18
157 158 0.980423 GCTGGAGTTCTCCCTCAACT 59.020 55.000 15.20 0.00 36.77 3.16
158 159 1.349357 GCTGGAGTTCTCCCTCAACTT 59.651 52.381 15.20 0.00 34.10 2.66
159 160 2.614229 GCTGGAGTTCTCCCTCAACTTC 60.614 54.545 15.20 0.00 34.10 3.01
160 161 2.903135 CTGGAGTTCTCCCTCAACTTCT 59.097 50.000 15.20 0.00 34.10 2.85
161 162 2.900546 TGGAGTTCTCCCTCAACTTCTC 59.099 50.000 15.20 0.00 34.10 2.87
162 163 2.235155 GGAGTTCTCCCTCAACTTCTCC 59.765 54.545 7.57 0.00 34.10 3.71
163 164 3.169908 GAGTTCTCCCTCAACTTCTCCT 58.830 50.000 0.00 0.00 34.10 3.69
164 165 3.169908 AGTTCTCCCTCAACTTCTCCTC 58.830 50.000 0.00 0.00 29.29 3.71
165 166 3.169908 GTTCTCCCTCAACTTCTCCTCT 58.830 50.000 0.00 0.00 0.00 3.69
166 167 3.094484 TCTCCCTCAACTTCTCCTCTC 57.906 52.381 0.00 0.00 0.00 3.20
167 168 2.107366 CTCCCTCAACTTCTCCTCTCC 58.893 57.143 0.00 0.00 0.00 3.71
168 169 1.199615 CCCTCAACTTCTCCTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
169 170 1.199615 CCTCAACTTCTCCTCTCCCC 58.800 60.000 0.00 0.00 0.00 4.81
170 171 1.273552 CCTCAACTTCTCCTCTCCCCT 60.274 57.143 0.00 0.00 0.00 4.79
171 172 2.545810 CTCAACTTCTCCTCTCCCCTT 58.454 52.381 0.00 0.00 0.00 3.95
172 173 2.235898 CTCAACTTCTCCTCTCCCCTTG 59.764 54.545 0.00 0.00 0.00 3.61
173 174 0.988063 AACTTCTCCTCTCCCCTTGC 59.012 55.000 0.00 0.00 0.00 4.01
174 175 0.118144 ACTTCTCCTCTCCCCTTGCT 59.882 55.000 0.00 0.00 0.00 3.91
175 176 0.540923 CTTCTCCTCTCCCCTTGCTG 59.459 60.000 0.00 0.00 0.00 4.41
176 177 0.911525 TTCTCCTCTCCCCTTGCTGG 60.912 60.000 0.00 0.00 0.00 4.85
177 178 1.306482 CTCCTCTCCCCTTGCTGGA 60.306 63.158 0.00 0.00 38.35 3.86
178 179 0.693767 CTCCTCTCCCCTTGCTGGAT 60.694 60.000 0.00 0.00 38.35 3.41
179 180 0.692419 TCCTCTCCCCTTGCTGGATC 60.692 60.000 0.00 0.00 38.35 3.36
180 181 0.984961 CCTCTCCCCTTGCTGGATCA 60.985 60.000 0.00 0.00 38.35 2.92
181 182 0.914644 CTCTCCCCTTGCTGGATCAA 59.085 55.000 0.00 0.00 38.35 2.57
182 183 0.914644 TCTCCCCTTGCTGGATCAAG 59.085 55.000 0.00 0.00 42.23 3.02
183 184 0.914644 CTCCCCTTGCTGGATCAAGA 59.085 55.000 0.00 0.00 44.61 3.02
184 185 1.283029 CTCCCCTTGCTGGATCAAGAA 59.717 52.381 0.00 0.00 44.61 2.52
185 186 1.283029 TCCCCTTGCTGGATCAAGAAG 59.717 52.381 0.00 2.15 44.61 2.85
186 187 1.684248 CCCCTTGCTGGATCAAGAAGG 60.684 57.143 16.02 16.02 44.61 3.46
187 188 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
188 189 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
189 190 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
190 191 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
191 192 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
192 193 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
193 194 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
194 195 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
195 196 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
196 197 2.100087 GGATCAAGAAGGAGGAGACGTC 59.900 54.545 7.70 7.70 0.00 4.34
197 198 2.588464 TCAAGAAGGAGGAGACGTCT 57.412 50.000 20.18 20.18 0.00 4.18
198 199 2.438411 TCAAGAAGGAGGAGACGTCTC 58.562 52.381 32.96 32.96 42.14 3.36
206 207 3.063084 GAGACGTCTCCGGGCTGT 61.063 66.667 31.24 0.55 38.78 4.40
207 208 1.748122 GAGACGTCTCCGGGCTGTA 60.748 63.158 31.24 0.00 38.78 2.74
208 209 1.991099 GAGACGTCTCCGGGCTGTAC 61.991 65.000 31.24 6.08 38.78 2.90
209 210 3.392595 GACGTCTCCGGGCTGTACG 62.393 68.421 8.70 7.49 38.78 3.67
210 211 3.437795 CGTCTCCGGGCTGTACGT 61.438 66.667 0.00 0.00 0.00 3.57
211 212 2.181021 GTCTCCGGGCTGTACGTG 59.819 66.667 0.00 0.00 0.00 4.49
212 213 2.282674 TCTCCGGGCTGTACGTGT 60.283 61.111 0.00 0.00 0.00 4.49
213 214 2.126071 CTCCGGGCTGTACGTGTG 60.126 66.667 0.00 0.00 0.00 3.82
214 215 2.913578 TCCGGGCTGTACGTGTGT 60.914 61.111 0.00 0.00 0.00 3.72
215 216 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
216 217 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
217 218 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
218 219 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
219 220 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
220 221 0.231279 GGCTGTACGTGTGTTGAACG 59.769 55.000 0.00 0.00 46.32 3.95
221 222 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
226 227 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
227 228 2.970324 TGTGTTGAACGCGGAGGC 60.970 61.111 12.47 0.00 0.00 4.70
247 248 4.170062 CGTCCGTTCGGCGCTAGA 62.170 66.667 7.64 4.43 39.71 2.43
248 249 2.412112 GTCCGTTCGGCGCTAGAT 59.588 61.111 7.64 0.00 39.71 1.98
249 250 1.657794 GTCCGTTCGGCGCTAGATC 60.658 63.158 7.64 5.92 39.71 2.75
250 251 2.726180 CCGTTCGGCGCTAGATCG 60.726 66.667 21.14 21.14 39.71 3.69
251 252 2.726180 CGTTCGGCGCTAGATCGG 60.726 66.667 20.67 9.02 0.00 4.18
252 253 2.719979 GTTCGGCGCTAGATCGGA 59.280 61.111 7.64 0.00 0.00 4.55
253 254 1.286260 GTTCGGCGCTAGATCGGAT 59.714 57.895 7.64 0.00 0.00 4.18
254 255 0.729816 GTTCGGCGCTAGATCGGATC 60.730 60.000 7.64 10.02 0.00 3.36
255 256 0.889638 TTCGGCGCTAGATCGGATCT 60.890 55.000 22.96 22.96 43.33 2.75
256 257 0.889638 TCGGCGCTAGATCGGATCTT 60.890 55.000 24.36 9.91 40.76 2.40
257 258 0.455295 CGGCGCTAGATCGGATCTTC 60.455 60.000 24.36 15.48 40.76 2.87
258 259 0.109039 GGCGCTAGATCGGATCTTCC 60.109 60.000 24.36 16.11 40.76 3.46
279 280 3.108521 GATATGAATCGCCGCGAGT 57.891 52.632 21.61 19.26 39.91 4.18
280 281 2.257974 GATATGAATCGCCGCGAGTA 57.742 50.000 21.61 9.98 39.91 2.59
281 282 1.912110 GATATGAATCGCCGCGAGTAC 59.088 52.381 21.61 14.26 39.91 2.73
282 283 0.385098 TATGAATCGCCGCGAGTACG 60.385 55.000 21.61 6.02 39.91 3.67
283 284 2.023741 GAATCGCCGCGAGTACGA 59.976 61.111 21.61 12.00 39.91 3.43
284 285 2.277756 AATCGCCGCGAGTACGAC 60.278 61.111 21.61 0.00 39.91 4.34
285 286 2.643764 GAATCGCCGCGAGTACGACT 62.644 60.000 21.61 0.18 39.91 4.18
286 287 2.643764 AATCGCCGCGAGTACGACTC 62.644 60.000 21.61 0.00 39.91 3.36
287 288 4.883300 CGCCGCGAGTACGACTCC 62.883 72.222 8.23 3.02 42.12 3.85
288 289 3.807538 GCCGCGAGTACGACTCCA 61.808 66.667 8.23 0.00 42.12 3.86
289 290 3.108343 CCGCGAGTACGACTCCAT 58.892 61.111 8.23 0.00 42.12 3.41
290 291 1.009900 CCGCGAGTACGACTCCATC 60.010 63.158 8.23 0.62 42.12 3.51
291 292 1.712018 CCGCGAGTACGACTCCATCA 61.712 60.000 8.23 0.00 42.12 3.07
292 293 0.098200 CGCGAGTACGACTCCATCAA 59.902 55.000 0.00 0.00 42.12 2.57
293 294 1.546834 GCGAGTACGACTCCATCAAC 58.453 55.000 8.73 0.00 42.12 3.18
294 295 1.798079 GCGAGTACGACTCCATCAACC 60.798 57.143 8.73 0.00 42.12 3.77
295 296 1.531264 CGAGTACGACTCCATCAACCG 60.531 57.143 8.73 0.00 42.12 4.44
296 297 0.172803 AGTACGACTCCATCAACCGC 59.827 55.000 0.00 0.00 0.00 5.68
297 298 1.138036 TACGACTCCATCAACCGCG 59.862 57.895 0.00 0.00 0.00 6.46
298 299 1.588824 TACGACTCCATCAACCGCGT 61.589 55.000 4.92 0.00 0.00 6.01
299 300 1.736645 CGACTCCATCAACCGCGTT 60.737 57.895 4.92 0.00 0.00 4.84
300 301 1.683790 CGACTCCATCAACCGCGTTC 61.684 60.000 4.92 0.00 0.00 3.95
301 302 0.389948 GACTCCATCAACCGCGTTCT 60.390 55.000 4.92 0.00 0.00 3.01
302 303 0.034896 ACTCCATCAACCGCGTTCTT 59.965 50.000 4.92 0.00 0.00 2.52
303 304 0.443869 CTCCATCAACCGCGTTCTTG 59.556 55.000 4.92 3.62 0.00 3.02
304 305 0.250124 TCCATCAACCGCGTTCTTGT 60.250 50.000 4.92 0.00 0.00 3.16
305 306 1.001068 TCCATCAACCGCGTTCTTGTA 59.999 47.619 4.92 0.00 0.00 2.41
306 307 1.801771 CCATCAACCGCGTTCTTGTAA 59.198 47.619 4.92 0.00 0.00 2.41
307 308 2.412325 CCATCAACCGCGTTCTTGTAAC 60.412 50.000 4.92 0.00 0.00 2.50
308 309 0.854062 TCAACCGCGTTCTTGTAACG 59.146 50.000 4.92 5.94 45.56 3.18
314 315 3.921081 CGTTCTTGTAACGCTTCCG 57.079 52.632 0.00 0.00 36.82 4.30
315 316 0.179258 CGTTCTTGTAACGCTTCCGC 60.179 55.000 0.00 0.00 36.82 5.54
316 317 1.145803 GTTCTTGTAACGCTTCCGCT 58.854 50.000 0.00 0.00 38.22 5.52
317 318 1.529865 GTTCTTGTAACGCTTCCGCTT 59.470 47.619 0.00 0.00 38.22 4.68
318 319 2.728690 TCTTGTAACGCTTCCGCTTA 57.271 45.000 0.00 0.00 38.22 3.09
319 320 2.602878 TCTTGTAACGCTTCCGCTTAG 58.397 47.619 0.00 0.00 38.22 2.18
320 321 1.060698 CTTGTAACGCTTCCGCTTAGC 59.939 52.381 0.00 0.00 38.22 3.09
333 334 0.940833 GCTTAGCGATCTTCAAGGGC 59.059 55.000 0.00 0.00 0.00 5.19
334 335 1.743772 GCTTAGCGATCTTCAAGGGCA 60.744 52.381 0.00 0.00 0.00 5.36
335 336 2.843701 CTTAGCGATCTTCAAGGGCAT 58.156 47.619 0.00 0.00 0.00 4.40
336 337 2.245159 TAGCGATCTTCAAGGGCATG 57.755 50.000 0.00 0.00 0.00 4.06
337 338 0.543277 AGCGATCTTCAAGGGCATGA 59.457 50.000 0.00 0.00 0.00 3.07
338 339 1.065199 AGCGATCTTCAAGGGCATGAA 60.065 47.619 0.00 5.09 37.70 2.57
353 354 2.836262 CATGAAGATGCACTCCCTCTC 58.164 52.381 0.00 0.00 0.00 3.20
354 355 2.244486 TGAAGATGCACTCCCTCTCT 57.756 50.000 0.00 0.00 0.00 3.10
355 356 2.106566 TGAAGATGCACTCCCTCTCTC 58.893 52.381 0.00 0.00 0.00 3.20
356 357 2.292126 TGAAGATGCACTCCCTCTCTCT 60.292 50.000 0.00 0.00 0.00 3.10
357 358 2.071778 AGATGCACTCCCTCTCTCTC 57.928 55.000 0.00 0.00 0.00 3.20
358 359 0.667993 GATGCACTCCCTCTCTCTCG 59.332 60.000 0.00 0.00 0.00 4.04
359 360 0.033601 ATGCACTCCCTCTCTCTCGT 60.034 55.000 0.00 0.00 0.00 4.18
360 361 0.251386 TGCACTCCCTCTCTCTCGTT 60.251 55.000 0.00 0.00 0.00 3.85
361 362 0.172352 GCACTCCCTCTCTCTCGTTG 59.828 60.000 0.00 0.00 0.00 4.10
362 363 0.172352 CACTCCCTCTCTCTCGTTGC 59.828 60.000 0.00 0.00 0.00 4.17
363 364 0.039035 ACTCCCTCTCTCTCGTTGCT 59.961 55.000 0.00 0.00 0.00 3.91
364 365 1.282447 ACTCCCTCTCTCTCGTTGCTA 59.718 52.381 0.00 0.00 0.00 3.49
365 366 1.946768 CTCCCTCTCTCTCGTTGCTAG 59.053 57.143 0.00 0.00 0.00 3.42
366 367 0.383949 CCCTCTCTCTCGTTGCTAGC 59.616 60.000 8.10 8.10 0.00 3.42
367 368 1.098869 CCTCTCTCTCGTTGCTAGCA 58.901 55.000 14.93 14.93 0.00 3.49
368 369 1.680735 CCTCTCTCTCGTTGCTAGCAT 59.319 52.381 20.13 0.00 0.00 3.79
369 370 2.287547 CCTCTCTCTCGTTGCTAGCATC 60.288 54.545 20.13 17.01 0.00 3.91
370 371 2.618241 CTCTCTCTCGTTGCTAGCATCT 59.382 50.000 20.13 0.00 0.00 2.90
371 372 2.616376 TCTCTCTCGTTGCTAGCATCTC 59.384 50.000 20.13 11.21 0.00 2.75
372 373 1.678627 TCTCTCGTTGCTAGCATCTCC 59.321 52.381 20.13 6.21 0.00 3.71
373 374 1.680735 CTCTCGTTGCTAGCATCTCCT 59.319 52.381 20.13 0.00 0.00 3.69
374 375 2.881513 CTCTCGTTGCTAGCATCTCCTA 59.118 50.000 20.13 0.00 0.00 2.94
375 376 2.881513 TCTCGTTGCTAGCATCTCCTAG 59.118 50.000 20.13 11.91 38.24 3.02
376 377 2.881513 CTCGTTGCTAGCATCTCCTAGA 59.118 50.000 20.13 8.93 37.57 2.43
377 378 3.491342 TCGTTGCTAGCATCTCCTAGAT 58.509 45.455 20.13 0.00 37.57 1.98
378 379 3.891977 TCGTTGCTAGCATCTCCTAGATT 59.108 43.478 20.13 0.00 37.57 2.40
379 380 3.986572 CGTTGCTAGCATCTCCTAGATTG 59.013 47.826 20.13 0.00 37.57 2.67
380 381 4.261783 CGTTGCTAGCATCTCCTAGATTGA 60.262 45.833 20.13 0.00 37.57 2.57
381 382 5.566429 CGTTGCTAGCATCTCCTAGATTGAT 60.566 44.000 20.13 0.00 37.57 2.57
382 383 5.657826 TGCTAGCATCTCCTAGATTGATC 57.342 43.478 14.93 0.00 37.57 2.92
383 384 5.331906 TGCTAGCATCTCCTAGATTGATCT 58.668 41.667 14.93 0.00 37.57 2.75
384 385 5.779260 TGCTAGCATCTCCTAGATTGATCTT 59.221 40.000 14.93 0.00 37.57 2.40
385 386 6.101332 GCTAGCATCTCCTAGATTGATCTTG 58.899 44.000 10.63 0.00 37.57 3.02
386 387 5.486735 AGCATCTCCTAGATTGATCTTGG 57.513 43.478 13.24 13.24 46.71 3.61
387 388 4.906664 AGCATCTCCTAGATTGATCTTGGT 59.093 41.667 17.17 4.74 45.88 3.67
388 389 4.996122 GCATCTCCTAGATTGATCTTGGTG 59.004 45.833 17.17 15.36 45.88 4.17
390 391 5.860941 TCTCCTAGATTGATCTTGGTGAC 57.139 43.478 17.17 0.00 45.88 3.67
391 392 5.272402 TCTCCTAGATTGATCTTGGTGACA 58.728 41.667 17.17 2.34 45.88 3.58
392 393 5.127845 TCTCCTAGATTGATCTTGGTGACAC 59.872 44.000 17.17 0.00 45.88 3.67
393 394 4.115516 CCTAGATTGATCTTGGTGACACG 58.884 47.826 11.74 0.00 42.44 4.49
394 395 3.685139 AGATTGATCTTGGTGACACGT 57.315 42.857 0.00 0.00 42.67 4.49
395 396 4.801330 AGATTGATCTTGGTGACACGTA 57.199 40.909 0.00 0.00 42.67 3.57
396 397 4.748892 AGATTGATCTTGGTGACACGTAG 58.251 43.478 0.00 0.00 42.67 3.51
397 398 3.313012 TTGATCTTGGTGACACGTAGG 57.687 47.619 0.00 0.00 42.67 3.18
398 399 2.521126 TGATCTTGGTGACACGTAGGA 58.479 47.619 0.00 0.00 42.67 2.94
399 400 2.894765 TGATCTTGGTGACACGTAGGAA 59.105 45.455 0.00 0.00 42.67 3.36
400 401 3.322541 TGATCTTGGTGACACGTAGGAAA 59.677 43.478 0.00 0.00 42.67 3.13
401 402 3.823281 TCTTGGTGACACGTAGGAAAA 57.177 42.857 0.00 0.00 42.67 2.29
402 403 4.345859 TCTTGGTGACACGTAGGAAAAT 57.654 40.909 0.00 0.00 42.67 1.82
403 404 4.710324 TCTTGGTGACACGTAGGAAAATT 58.290 39.130 0.00 0.00 42.67 1.82
404 405 5.127491 TCTTGGTGACACGTAGGAAAATTT 58.873 37.500 0.00 0.00 42.67 1.82
405 406 5.591067 TCTTGGTGACACGTAGGAAAATTTT 59.409 36.000 2.28 2.28 42.67 1.82
406 407 5.176407 TGGTGACACGTAGGAAAATTTTG 57.824 39.130 8.47 0.00 33.40 2.44
407 408 4.882427 TGGTGACACGTAGGAAAATTTTGA 59.118 37.500 8.47 0.00 33.40 2.69
408 409 5.357314 TGGTGACACGTAGGAAAATTTTGAA 59.643 36.000 8.47 0.00 33.40 2.69
409 410 6.039941 TGGTGACACGTAGGAAAATTTTGAAT 59.960 34.615 8.47 0.00 33.40 2.57
410 411 6.921307 GGTGACACGTAGGAAAATTTTGAATT 59.079 34.615 8.47 0.00 0.00 2.17
411 412 8.077386 GGTGACACGTAGGAAAATTTTGAATTA 58.923 33.333 8.47 0.00 0.00 1.40
412 413 9.620660 GTGACACGTAGGAAAATTTTGAATTAT 57.379 29.630 8.47 0.00 0.00 1.28
415 416 8.921670 ACACGTAGGAAAATTTTGAATTATTGC 58.078 29.630 8.47 0.00 0.00 3.56
416 417 9.139174 CACGTAGGAAAATTTTGAATTATTGCT 57.861 29.630 8.47 0.00 0.00 3.91
421 422 9.705290 AGGAAAATTTTGAATTATTGCTACGTT 57.295 25.926 8.47 0.00 0.00 3.99
422 423 9.952341 GGAAAATTTTGAATTATTGCTACGTTC 57.048 29.630 8.47 0.00 0.00 3.95
423 424 9.952341 GAAAATTTTGAATTATTGCTACGTTCC 57.048 29.630 8.47 0.00 0.00 3.62
424 425 8.474006 AAATTTTGAATTATTGCTACGTTCCC 57.526 30.769 0.00 0.00 0.00 3.97
425 426 5.570234 TTTGAATTATTGCTACGTTCCCC 57.430 39.130 0.00 0.00 0.00 4.81
426 427 4.223556 TGAATTATTGCTACGTTCCCCA 57.776 40.909 0.00 0.00 0.00 4.96
427 428 4.590918 TGAATTATTGCTACGTTCCCCAA 58.409 39.130 0.00 0.00 0.00 4.12
428 429 4.396790 TGAATTATTGCTACGTTCCCCAAC 59.603 41.667 0.00 0.00 0.00 3.77
429 430 3.420300 TTATTGCTACGTTCCCCAACA 57.580 42.857 0.00 0.00 32.14 3.33
447 448 1.137086 ACACATGGACCATCTAGCGAC 59.863 52.381 3.21 0.00 0.00 5.19
473 474 4.418401 GCGCTTGGCATGCCGAAA 62.418 61.111 30.87 19.61 42.87 3.46
474 475 2.202518 CGCTTGGCATGCCGAAAG 60.203 61.111 30.87 27.79 39.42 2.62
531 532 3.056891 CGGGCAAACCTTGTGAAATGTAT 60.057 43.478 0.00 0.00 36.97 2.29
577 578 1.126113 CCTGCGTTACAAGCTTACACG 59.874 52.381 16.12 16.12 35.28 4.49
583 584 4.317980 GCGTTACAAGCTTACACGTGTAAA 60.318 41.667 33.77 19.95 43.06 2.01
615 616 9.297037 GTAAAATAGTATAGGGCCATTTGTGAT 57.703 33.333 6.18 0.00 0.00 3.06
617 618 6.959606 ATAGTATAGGGCCATTTGTGATCT 57.040 37.500 6.18 0.00 0.00 2.75
783 813 6.295249 TGTGCCTGATTCGATTGGAAATATA 58.705 36.000 0.00 0.00 38.36 0.86
918 948 2.288152 GCGTGACACCATCAACCAAAAT 60.288 45.455 0.00 0.00 39.72 1.82
1180 1213 4.771356 ACGATGACGACGCCGGTG 62.771 66.667 14.93 14.93 42.66 4.94
1198 1231 2.726351 GCCCTCCTCTCCAACCTCG 61.726 68.421 0.00 0.00 0.00 4.63
1296 1329 1.517832 GCACGAGCTCCACTACCAT 59.482 57.895 8.47 0.00 37.91 3.55
1325 1358 2.338620 CGTCAGCTTCACCGTGGA 59.661 61.111 0.00 0.00 0.00 4.02
1334 1367 2.462255 TTCACCGTGGACGAGTACGC 62.462 60.000 0.00 0.00 43.96 4.42
1491 1533 4.388499 GGCGTGACCGTCCACCAT 62.388 66.667 0.00 0.00 36.15 3.55
1533 1575 2.029073 ACGCACTTCCTCCACACG 59.971 61.111 0.00 0.00 0.00 4.49
1761 1815 0.535335 GGAGCATCAAGGACACGGTA 59.465 55.000 0.00 0.00 36.25 4.02
1860 1915 2.949678 CACTGCTACTACCGCGCG 60.950 66.667 25.67 25.67 0.00 6.86
2441 2519 5.473846 TGTCGTCAGAACTCAGAAAGTCTAT 59.526 40.000 0.00 0.00 37.17 1.98
2443 2521 6.864165 GTCGTCAGAACTCAGAAAGTCTATTT 59.136 38.462 0.00 0.00 37.17 1.40
2448 2526 9.265901 TCAGAACTCAGAAAGTCTATTTTCTTG 57.734 33.333 0.00 0.00 43.08 3.02
2478 2563 2.900546 TGGTCAAGTCTTCCCTCTTCTC 59.099 50.000 0.70 0.00 0.00 2.87
2499 4057 3.053455 CACGGTCAAGTCTTCTTCACTC 58.947 50.000 0.00 0.00 0.00 3.51
2520 4078 5.010415 ACTCCTTTCCTTTCTTTTGCAGATG 59.990 40.000 0.00 0.00 0.00 2.90
2694 4255 1.939974 ATGCTATGCACGTGTCGATT 58.060 45.000 18.38 0.45 43.04 3.34
2914 5801 8.914011 AGGGAGGCAGTATTTGTTTATATTTTC 58.086 33.333 0.00 0.00 0.00 2.29
2915 5802 8.141909 GGGAGGCAGTATTTGTTTATATTTTCC 58.858 37.037 0.00 0.00 0.00 3.13
3008 5905 4.859304 ACACAAGTCCAGTACGACATTA 57.141 40.909 4.09 0.00 35.07 1.90
3025 5922 5.968261 CGACATTAGATATAGACATCGCTGG 59.032 44.000 0.00 0.00 0.00 4.85
3066 5963 2.693591 CCTTTCATCCGGAGCACTAGTA 59.306 50.000 11.34 0.00 0.00 1.82
3071 5968 2.412112 CGGAGCACTAGTACCGGC 59.588 66.667 20.35 10.22 41.41 6.13
3125 6022 2.388232 GCAACATCGTCACGGGTCC 61.388 63.158 0.00 0.00 0.00 4.46
3137 6034 2.303311 TCACGGGTCCAATGTAACATCA 59.697 45.455 0.00 0.00 0.00 3.07
3326 6223 5.435686 AATAGCCACTTCAGAATACCACA 57.564 39.130 0.00 0.00 0.00 4.17
3363 6260 0.033601 AATGTGGAGCCCGCCAAATA 60.034 50.000 0.00 0.00 40.20 1.40
3381 6278 6.593770 GCCAAATAAAGGTGAAATTGGTTAGG 59.406 38.462 0.00 0.00 39.53 2.69
3439 6336 7.961326 AGTGCAGGATATTGGTAAGAAATTT 57.039 32.000 0.00 0.00 0.00 1.82
3443 6340 8.811017 TGCAGGATATTGGTAAGAAATTTTTGA 58.189 29.630 0.00 0.00 0.00 2.69
3455 6352 6.254281 AGAAATTTTTGATACCTGGACACG 57.746 37.500 0.00 0.00 0.00 4.49
3459 6356 7.931578 AATTTTTGATACCTGGACACGATTA 57.068 32.000 0.00 0.00 0.00 1.75
3469 6366 4.806247 CCTGGACACGATTAGATTTGAGTC 59.194 45.833 0.00 0.00 0.00 3.36
3470 6367 4.755411 TGGACACGATTAGATTTGAGTCC 58.245 43.478 0.00 0.00 43.41 3.85
3472 6369 4.439700 GGACACGATTAGATTTGAGTCCGA 60.440 45.833 0.00 0.00 35.49 4.55
3473 6370 5.068234 ACACGATTAGATTTGAGTCCGAA 57.932 39.130 0.00 0.00 0.00 4.30
3474 6371 5.661458 ACACGATTAGATTTGAGTCCGAAT 58.339 37.500 0.00 0.00 0.00 3.34
3475 6372 5.749109 ACACGATTAGATTTGAGTCCGAATC 59.251 40.000 7.80 7.80 41.46 2.52
3476 6373 4.976731 ACGATTAGATTTGAGTCCGAATCG 59.023 41.667 15.45 15.45 44.34 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.339093 CCCTCCCAACCCCCTCAC 61.339 72.222 0.00 0.00 0.00 3.51
7 8 2.689691 TATGGCTGCCCTCCCAACC 61.690 63.158 17.53 0.00 34.25 3.77
8 9 1.453928 GTATGGCTGCCCTCCCAAC 60.454 63.158 17.53 0.00 34.25 3.77
9 10 2.689691 GGTATGGCTGCCCTCCCAA 61.690 63.158 17.53 0.00 34.25 4.12
10 11 3.096495 GGTATGGCTGCCCTCCCA 61.096 66.667 17.53 0.00 35.21 4.37
11 12 3.890926 GGGTATGGCTGCCCTCCC 61.891 72.222 17.53 19.73 43.67 4.30
16 17 1.937924 AAGGGAAGGGTATGGCTGCC 61.938 60.000 12.87 12.87 0.00 4.85
17 18 0.753111 CAAGGGAAGGGTATGGCTGC 60.753 60.000 0.00 0.00 0.00 5.25
18 19 0.106519 CCAAGGGAAGGGTATGGCTG 60.107 60.000 0.00 0.00 0.00 4.85
19 20 2.321720 CCAAGGGAAGGGTATGGCT 58.678 57.895 0.00 0.00 0.00 4.75
21 22 1.152963 CGCCAAGGGAAGGGTATGG 60.153 63.158 0.00 0.00 0.00 2.74
22 23 1.823899 GCGCCAAGGGAAGGGTATG 60.824 63.158 0.00 0.00 0.00 2.39
23 24 2.270874 CTGCGCCAAGGGAAGGGTAT 62.271 60.000 4.18 0.00 0.00 2.73
24 25 2.931105 TGCGCCAAGGGAAGGGTA 60.931 61.111 4.18 0.00 0.00 3.69
25 26 4.351054 CTGCGCCAAGGGAAGGGT 62.351 66.667 4.18 0.00 0.00 4.34
39 40 3.803162 GAGGAGGAAGGGGGCTGC 61.803 72.222 0.00 0.00 0.00 5.25
40 41 0.400525 TATGAGGAGGAAGGGGGCTG 60.401 60.000 0.00 0.00 0.00 4.85
41 42 0.400670 GTATGAGGAGGAAGGGGGCT 60.401 60.000 0.00 0.00 0.00 5.19
42 43 0.694444 TGTATGAGGAGGAAGGGGGC 60.694 60.000 0.00 0.00 0.00 5.80
43 44 1.981495 GATGTATGAGGAGGAAGGGGG 59.019 57.143 0.00 0.00 0.00 5.40
44 45 2.903135 GAGATGTATGAGGAGGAAGGGG 59.097 54.545 0.00 0.00 0.00 4.79
45 46 2.903135 GGAGATGTATGAGGAGGAAGGG 59.097 54.545 0.00 0.00 0.00 3.95
46 47 3.831911 GAGGAGATGTATGAGGAGGAAGG 59.168 52.174 0.00 0.00 0.00 3.46
47 48 3.831911 GGAGGAGATGTATGAGGAGGAAG 59.168 52.174 0.00 0.00 0.00 3.46
48 49 3.752218 CGGAGGAGATGTATGAGGAGGAA 60.752 52.174 0.00 0.00 0.00 3.36
49 50 2.224892 CGGAGGAGATGTATGAGGAGGA 60.225 54.545 0.00 0.00 0.00 3.71
50 51 2.166829 CGGAGGAGATGTATGAGGAGG 58.833 57.143 0.00 0.00 0.00 4.30
51 52 2.870175 ACGGAGGAGATGTATGAGGAG 58.130 52.381 0.00 0.00 0.00 3.69
52 53 3.394940 ACTACGGAGGAGATGTATGAGGA 59.605 47.826 0.00 0.00 0.00 3.71
53 54 3.757270 ACTACGGAGGAGATGTATGAGG 58.243 50.000 0.00 0.00 0.00 3.86
54 55 5.553123 ACTACTACGGAGGAGATGTATGAG 58.447 45.833 15.87 0.00 35.30 2.90
55 56 5.563876 ACTACTACGGAGGAGATGTATGA 57.436 43.478 15.87 0.00 35.30 2.15
56 57 6.369340 CACTACTACTACGGAGGAGATGTATG 59.631 46.154 15.87 0.33 35.30 2.39
57 58 6.465948 CACTACTACTACGGAGGAGATGTAT 58.534 44.000 15.87 0.00 35.30 2.29
58 59 5.741383 GCACTACTACTACGGAGGAGATGTA 60.741 48.000 15.87 0.00 35.30 2.29
59 60 4.706035 CACTACTACTACGGAGGAGATGT 58.294 47.826 15.87 8.83 35.30 3.06
60 61 3.499157 GCACTACTACTACGGAGGAGATG 59.501 52.174 15.87 9.95 35.30 2.90
61 62 3.391955 AGCACTACTACTACGGAGGAGAT 59.608 47.826 15.87 0.00 35.30 2.75
62 63 2.770802 AGCACTACTACTACGGAGGAGA 59.229 50.000 15.87 0.00 35.30 3.71
63 64 3.196939 AGCACTACTACTACGGAGGAG 57.803 52.381 4.92 4.92 39.90 3.69
64 65 3.276857 CAAGCACTACTACTACGGAGGA 58.723 50.000 0.00 0.00 0.00 3.71
65 66 2.358267 CCAAGCACTACTACTACGGAGG 59.642 54.545 0.00 0.00 0.00 4.30
66 67 2.223525 GCCAAGCACTACTACTACGGAG 60.224 54.545 0.00 0.00 0.00 4.63
67 68 1.747355 GCCAAGCACTACTACTACGGA 59.253 52.381 0.00 0.00 0.00 4.69
68 69 1.533338 CGCCAAGCACTACTACTACGG 60.533 57.143 0.00 0.00 0.00 4.02
69 70 1.399440 TCGCCAAGCACTACTACTACG 59.601 52.381 0.00 0.00 0.00 3.51
70 71 3.436496 CTTCGCCAAGCACTACTACTAC 58.564 50.000 0.00 0.00 0.00 2.73
71 72 3.777465 CTTCGCCAAGCACTACTACTA 57.223 47.619 0.00 0.00 0.00 1.82
72 73 2.656560 CTTCGCCAAGCACTACTACT 57.343 50.000 0.00 0.00 0.00 2.57
87 88 4.082523 TTCTCCGGCAGGGCTTCG 62.083 66.667 2.05 0.00 38.33 3.79
88 89 2.436824 GTTCTCCGGCAGGGCTTC 60.437 66.667 2.05 0.00 38.33 3.86
89 90 4.035102 GGTTCTCCGGCAGGGCTT 62.035 66.667 2.05 0.00 38.33 4.35
92 93 4.760047 CGTGGTTCTCCGGCAGGG 62.760 72.222 2.05 0.00 38.33 4.45
93 94 3.649277 CTCGTGGTTCTCCGGCAGG 62.649 68.421 0.00 0.00 36.30 4.85
94 95 2.125912 CTCGTGGTTCTCCGGCAG 60.126 66.667 0.00 0.00 36.30 4.85
95 96 4.373116 GCTCGTGGTTCTCCGGCA 62.373 66.667 0.00 0.00 36.30 5.69
96 97 3.991536 GAGCTCGTGGTTCTCCGGC 62.992 68.421 0.00 0.00 36.30 6.13
97 98 2.182030 GAGCTCGTGGTTCTCCGG 59.818 66.667 0.00 0.00 36.30 5.14
98 99 2.182030 GGAGCTCGTGGTTCTCCG 59.818 66.667 7.83 0.00 37.28 4.63
99 100 0.250513 AATGGAGCTCGTGGTTCTCC 59.749 55.000 7.83 0.00 45.02 3.71
100 101 1.363744 CAATGGAGCTCGTGGTTCTC 58.636 55.000 7.83 0.00 0.00 2.87
101 102 0.674895 GCAATGGAGCTCGTGGTTCT 60.675 55.000 7.83 0.00 0.00 3.01
102 103 1.648467 GGCAATGGAGCTCGTGGTTC 61.648 60.000 7.83 0.00 34.17 3.62
103 104 1.675641 GGCAATGGAGCTCGTGGTT 60.676 57.895 7.83 0.00 34.17 3.67
104 105 2.045926 GGCAATGGAGCTCGTGGT 60.046 61.111 7.83 0.00 34.17 4.16
105 106 2.046023 TGGCAATGGAGCTCGTGG 60.046 61.111 7.83 0.00 34.17 4.94
106 107 2.401766 GGTGGCAATGGAGCTCGTG 61.402 63.158 7.83 6.97 34.17 4.35
107 108 2.045926 GGTGGCAATGGAGCTCGT 60.046 61.111 7.83 0.00 34.17 4.18
108 109 1.452651 ATGGTGGCAATGGAGCTCG 60.453 57.895 7.83 0.00 34.17 5.03
109 110 0.682209 ACATGGTGGCAATGGAGCTC 60.682 55.000 4.71 4.71 34.17 4.09
110 111 0.682209 GACATGGTGGCAATGGAGCT 60.682 55.000 0.00 0.00 34.17 4.09
111 112 1.811860 GACATGGTGGCAATGGAGC 59.188 57.895 0.00 0.00 0.00 4.70
112 113 0.677731 ACGACATGGTGGCAATGGAG 60.678 55.000 0.00 0.64 0.00 3.86
113 114 0.676466 GACGACATGGTGGCAATGGA 60.676 55.000 0.00 0.00 0.00 3.41
114 115 0.959867 TGACGACATGGTGGCAATGG 60.960 55.000 0.00 0.00 0.00 3.16
115 116 1.097232 ATGACGACATGGTGGCAATG 58.903 50.000 0.00 0.00 35.21 2.82
116 117 1.097232 CATGACGACATGGTGGCAAT 58.903 50.000 18.37 0.00 46.95 3.56
117 118 2.553962 CATGACGACATGGTGGCAA 58.446 52.632 18.37 0.00 46.95 4.52
118 119 4.299756 CATGACGACATGGTGGCA 57.700 55.556 18.37 0.00 46.95 4.92
125 126 0.461516 CTCCAGCAGCATGACGACAT 60.462 55.000 0.00 0.00 39.69 3.06
126 127 1.079612 CTCCAGCAGCATGACGACA 60.080 57.895 0.00 0.00 39.69 4.35
127 128 0.671781 AACTCCAGCAGCATGACGAC 60.672 55.000 0.00 0.00 39.69 4.34
128 129 0.390340 GAACTCCAGCAGCATGACGA 60.390 55.000 0.00 0.00 39.69 4.20
129 130 0.390866 AGAACTCCAGCAGCATGACG 60.391 55.000 0.00 0.00 39.69 4.35
130 131 1.367659 GAGAACTCCAGCAGCATGAC 58.632 55.000 0.00 0.00 39.69 3.06
131 132 3.849002 GAGAACTCCAGCAGCATGA 57.151 52.632 0.00 0.00 39.69 3.07
142 143 3.169908 AGGAGAAGTTGAGGGAGAACTC 58.830 50.000 0.00 0.00 32.33 3.01
143 144 3.169908 GAGGAGAAGTTGAGGGAGAACT 58.830 50.000 0.00 0.00 35.08 3.01
144 145 3.169908 AGAGGAGAAGTTGAGGGAGAAC 58.830 50.000 0.00 0.00 0.00 3.01
145 146 3.436243 GAGAGGAGAAGTTGAGGGAGAA 58.564 50.000 0.00 0.00 0.00 2.87
146 147 2.291930 GGAGAGGAGAAGTTGAGGGAGA 60.292 54.545 0.00 0.00 0.00 3.71
147 148 2.107366 GGAGAGGAGAAGTTGAGGGAG 58.893 57.143 0.00 0.00 0.00 4.30
148 149 1.273324 GGGAGAGGAGAAGTTGAGGGA 60.273 57.143 0.00 0.00 0.00 4.20
149 150 1.199615 GGGAGAGGAGAAGTTGAGGG 58.800 60.000 0.00 0.00 0.00 4.30
150 151 1.199615 GGGGAGAGGAGAAGTTGAGG 58.800 60.000 0.00 0.00 0.00 3.86
151 152 2.235898 CAAGGGGAGAGGAGAAGTTGAG 59.764 54.545 0.00 0.00 0.00 3.02
152 153 2.260822 CAAGGGGAGAGGAGAAGTTGA 58.739 52.381 0.00 0.00 0.00 3.18
153 154 1.339535 GCAAGGGGAGAGGAGAAGTTG 60.340 57.143 0.00 0.00 0.00 3.16
154 155 0.988063 GCAAGGGGAGAGGAGAAGTT 59.012 55.000 0.00 0.00 0.00 2.66
155 156 0.118144 AGCAAGGGGAGAGGAGAAGT 59.882 55.000 0.00 0.00 0.00 3.01
156 157 0.540923 CAGCAAGGGGAGAGGAGAAG 59.459 60.000 0.00 0.00 0.00 2.85
157 158 0.911525 CCAGCAAGGGGAGAGGAGAA 60.912 60.000 0.00 0.00 0.00 2.87
158 159 1.306482 CCAGCAAGGGGAGAGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
159 160 0.693767 ATCCAGCAAGGGGAGAGGAG 60.694 60.000 0.00 0.00 37.96 3.69
160 161 0.692419 GATCCAGCAAGGGGAGAGGA 60.692 60.000 0.00 0.00 37.96 3.71
161 162 0.984961 TGATCCAGCAAGGGGAGAGG 60.985 60.000 0.00 0.00 37.96 3.69
162 163 0.914644 TTGATCCAGCAAGGGGAGAG 59.085 55.000 0.00 0.00 37.96 3.20
163 164 0.914644 CTTGATCCAGCAAGGGGAGA 59.085 55.000 0.00 0.00 41.15 3.71
164 165 0.914644 TCTTGATCCAGCAAGGGGAG 59.085 55.000 4.79 0.00 44.14 4.30
165 166 1.283029 CTTCTTGATCCAGCAAGGGGA 59.717 52.381 4.79 0.00 44.14 4.81
166 167 1.684248 CCTTCTTGATCCAGCAAGGGG 60.684 57.143 4.79 4.42 44.14 4.79
167 168 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
168 169 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
169 170 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
170 171 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
171 172 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
172 173 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
173 174 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
174 175 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
175 176 2.100087 GACGTCTCCTCCTTCTTGATCC 59.900 54.545 8.70 0.00 0.00 3.36
176 177 3.020984 AGACGTCTCCTCCTTCTTGATC 58.979 50.000 13.58 0.00 0.00 2.92
177 178 3.020984 GAGACGTCTCCTCCTTCTTGAT 58.979 50.000 31.24 0.00 37.02 2.57
178 179 2.438411 GAGACGTCTCCTCCTTCTTGA 58.562 52.381 31.24 0.00 37.02 3.02
179 180 2.931512 GAGACGTCTCCTCCTTCTTG 57.068 55.000 31.24 0.00 37.02 3.02
194 195 2.181021 CACGTACAGCCCGGAGAC 59.819 66.667 0.73 0.00 0.00 3.36
195 196 2.282674 ACACGTACAGCCCGGAGA 60.283 61.111 0.73 0.00 0.00 3.71
196 197 2.126071 CACACGTACAGCCCGGAG 60.126 66.667 0.73 0.00 0.00 4.63
197 198 2.500714 AACACACGTACAGCCCGGA 61.501 57.895 0.73 0.00 0.00 5.14
198 199 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
199 200 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
200 201 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
201 202 0.231279 CGTTCAACACACGTACAGCC 59.769 55.000 0.00 0.00 32.80 4.85
202 203 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
203 204 0.111878 CGCGTTCAACACACGTACAG 60.112 55.000 0.00 0.00 39.92 2.74
204 205 1.481019 CCGCGTTCAACACACGTACA 61.481 55.000 4.92 0.00 39.92 2.90
205 206 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
206 207 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
207 208 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
208 209 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
209 210 2.935955 CCTCCGCGTTCAACACAC 59.064 61.111 4.92 0.00 0.00 3.82
210 211 2.970324 GCCTCCGCGTTCAACACA 60.970 61.111 4.92 0.00 0.00 3.72
230 231 3.465296 ATCTAGCGCCGAACGGACG 62.465 63.158 17.63 18.63 43.93 4.79
231 232 1.657794 GATCTAGCGCCGAACGGAC 60.658 63.158 17.63 7.92 43.93 4.79
232 233 2.719979 GATCTAGCGCCGAACGGA 59.280 61.111 17.63 0.00 43.93 4.69
233 234 2.726180 CGATCTAGCGCCGAACGG 60.726 66.667 15.85 9.00 43.93 4.44
235 236 0.729816 GATCCGATCTAGCGCCGAAC 60.730 60.000 2.29 0.00 0.00 3.95
236 237 0.889638 AGATCCGATCTAGCGCCGAA 60.890 55.000 9.27 0.00 38.00 4.30
237 238 0.889638 AAGATCCGATCTAGCGCCGA 60.890 55.000 11.39 0.39 39.08 5.54
238 239 0.455295 GAAGATCCGATCTAGCGCCG 60.455 60.000 11.39 0.00 39.08 6.46
239 240 0.109039 GGAAGATCCGATCTAGCGCC 60.109 60.000 11.39 7.37 39.08 6.53
240 241 3.410098 GGAAGATCCGATCTAGCGC 57.590 57.895 11.39 0.00 39.08 5.92
250 251 2.854777 CGATTCATATCGCGGAAGATCC 59.145 50.000 6.13 0.00 46.15 3.36
261 262 1.912110 GTACTCGCGGCGATTCATATC 59.088 52.381 26.60 8.52 34.61 1.63
262 263 1.728179 CGTACTCGCGGCGATTCATAT 60.728 52.381 26.60 9.68 34.61 1.78
263 264 0.385098 CGTACTCGCGGCGATTCATA 60.385 55.000 26.60 12.84 34.61 2.15
264 265 1.657487 CGTACTCGCGGCGATTCAT 60.657 57.895 26.60 13.83 34.61 2.57
265 266 2.277692 CGTACTCGCGGCGATTCA 60.278 61.111 26.60 10.93 34.61 2.57
266 267 2.023741 TCGTACTCGCGGCGATTC 59.976 61.111 26.60 16.73 34.61 2.52
267 268 2.277756 GTCGTACTCGCGGCGATT 60.278 61.111 26.60 22.48 37.00 3.34
268 269 3.165670 GAGTCGTACTCGCGGCGAT 62.166 63.158 26.60 17.43 41.85 4.58
269 270 3.857854 GAGTCGTACTCGCGGCGA 61.858 66.667 24.84 24.84 41.85 5.54
270 271 4.883300 GGAGTCGTACTCGCGGCG 62.883 72.222 17.70 17.70 45.96 6.46
271 272 2.985486 GATGGAGTCGTACTCGCGGC 62.985 65.000 6.13 0.00 45.96 6.53
272 273 1.009900 GATGGAGTCGTACTCGCGG 60.010 63.158 6.13 0.00 45.96 6.46
273 274 0.098200 TTGATGGAGTCGTACTCGCG 59.902 55.000 0.00 0.00 45.96 5.87
274 275 1.546834 GTTGATGGAGTCGTACTCGC 58.453 55.000 8.33 3.96 45.96 5.03
275 276 1.531264 CGGTTGATGGAGTCGTACTCG 60.531 57.143 8.33 0.00 45.96 4.18
276 277 1.798079 GCGGTTGATGGAGTCGTACTC 60.798 57.143 6.50 6.50 44.32 2.59
277 278 0.172803 GCGGTTGATGGAGTCGTACT 59.827 55.000 0.00 0.00 0.00 2.73
278 279 1.138047 CGCGGTTGATGGAGTCGTAC 61.138 60.000 0.00 0.00 0.00 3.67
279 280 1.138036 CGCGGTTGATGGAGTCGTA 59.862 57.895 0.00 0.00 0.00 3.43
280 281 2.126071 CGCGGTTGATGGAGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
281 282 1.683790 GAACGCGGTTGATGGAGTCG 61.684 60.000 12.47 0.00 0.00 4.18
282 283 0.389948 AGAACGCGGTTGATGGAGTC 60.390 55.000 12.47 0.00 0.00 3.36
283 284 0.034896 AAGAACGCGGTTGATGGAGT 59.965 50.000 12.47 0.00 0.00 3.85
284 285 0.443869 CAAGAACGCGGTTGATGGAG 59.556 55.000 12.47 0.00 0.00 3.86
285 286 0.250124 ACAAGAACGCGGTTGATGGA 60.250 50.000 20.59 0.00 0.00 3.41
286 287 1.434555 TACAAGAACGCGGTTGATGG 58.565 50.000 20.59 1.93 0.00 3.51
287 288 2.720590 CGTTACAAGAACGCGGTTGATG 60.721 50.000 20.59 12.77 36.82 3.07
288 289 1.458064 CGTTACAAGAACGCGGTTGAT 59.542 47.619 20.59 10.19 36.82 2.57
289 290 0.854062 CGTTACAAGAACGCGGTTGA 59.146 50.000 20.59 5.90 36.82 3.18
290 291 3.338603 CGTTACAAGAACGCGGTTG 57.661 52.632 12.47 13.64 36.82 3.77
296 297 3.921081 CGGAAGCGTTACAAGAACG 57.079 52.632 5.50 5.50 45.56 3.95
314 315 0.940833 GCCCTTGAAGATCGCTAAGC 59.059 55.000 0.00 0.00 0.00 3.09
315 316 2.315925 TGCCCTTGAAGATCGCTAAG 57.684 50.000 0.00 0.00 0.00 2.18
316 317 2.170397 TCATGCCCTTGAAGATCGCTAA 59.830 45.455 0.00 0.00 0.00 3.09
317 318 1.762370 TCATGCCCTTGAAGATCGCTA 59.238 47.619 0.00 0.00 0.00 4.26
318 319 0.543277 TCATGCCCTTGAAGATCGCT 59.457 50.000 0.00 0.00 0.00 4.93
319 320 1.382522 TTCATGCCCTTGAAGATCGC 58.617 50.000 0.00 0.00 32.07 4.58
333 334 2.435069 AGAGAGGGAGTGCATCTTCATG 59.565 50.000 0.00 0.00 0.00 3.07
334 335 2.699846 GAGAGAGGGAGTGCATCTTCAT 59.300 50.000 0.00 0.00 0.00 2.57
335 336 2.106566 GAGAGAGGGAGTGCATCTTCA 58.893 52.381 0.00 0.00 0.00 3.02
336 337 2.362077 GAGAGAGAGGGAGTGCATCTTC 59.638 54.545 0.00 0.87 0.00 2.87
337 338 2.387757 GAGAGAGAGGGAGTGCATCTT 58.612 52.381 0.00 0.00 0.00 2.40
338 339 1.750332 CGAGAGAGAGGGAGTGCATCT 60.750 57.143 0.00 0.00 0.00 2.90
339 340 0.667993 CGAGAGAGAGGGAGTGCATC 59.332 60.000 0.00 0.00 0.00 3.91
340 341 0.033601 ACGAGAGAGAGGGAGTGCAT 60.034 55.000 0.00 0.00 0.00 3.96
341 342 0.251386 AACGAGAGAGAGGGAGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
342 343 0.172352 CAACGAGAGAGAGGGAGTGC 59.828 60.000 0.00 0.00 0.00 4.40
343 344 0.172352 GCAACGAGAGAGAGGGAGTG 59.828 60.000 0.00 0.00 0.00 3.51
344 345 0.039035 AGCAACGAGAGAGAGGGAGT 59.961 55.000 0.00 0.00 0.00 3.85
345 346 1.946768 CTAGCAACGAGAGAGAGGGAG 59.053 57.143 0.00 0.00 0.00 4.30
346 347 2.019668 GCTAGCAACGAGAGAGAGGGA 61.020 57.143 10.63 0.00 0.00 4.20
347 348 0.383949 GCTAGCAACGAGAGAGAGGG 59.616 60.000 10.63 0.00 0.00 4.30
348 349 1.098869 TGCTAGCAACGAGAGAGAGG 58.901 55.000 16.84 0.00 0.00 3.69
349 350 2.618241 AGATGCTAGCAACGAGAGAGAG 59.382 50.000 23.54 0.00 0.00 3.20
350 351 2.616376 GAGATGCTAGCAACGAGAGAGA 59.384 50.000 23.54 0.00 0.00 3.10
351 352 2.287547 GGAGATGCTAGCAACGAGAGAG 60.288 54.545 23.54 0.00 0.00 3.20
352 353 1.678627 GGAGATGCTAGCAACGAGAGA 59.321 52.381 23.54 0.00 0.00 3.10
353 354 1.680735 AGGAGATGCTAGCAACGAGAG 59.319 52.381 23.54 0.00 0.00 3.20
354 355 1.769026 AGGAGATGCTAGCAACGAGA 58.231 50.000 23.54 0.00 0.00 4.04
355 356 2.881513 TCTAGGAGATGCTAGCAACGAG 59.118 50.000 23.54 16.53 0.00 4.18
356 357 2.932261 TCTAGGAGATGCTAGCAACGA 58.068 47.619 23.54 8.42 0.00 3.85
357 358 3.932545 ATCTAGGAGATGCTAGCAACG 57.067 47.619 23.54 6.00 32.80 4.10
358 359 5.207110 TCAATCTAGGAGATGCTAGCAAC 57.793 43.478 23.54 19.83 34.65 4.17
359 360 5.779260 AGATCAATCTAGGAGATGCTAGCAA 59.221 40.000 23.54 5.32 34.65 3.91
360 361 5.331906 AGATCAATCTAGGAGATGCTAGCA 58.668 41.667 21.85 21.85 34.65 3.49
361 362 5.920193 AGATCAATCTAGGAGATGCTAGC 57.080 43.478 8.10 8.10 34.65 3.42
362 363 6.211184 ACCAAGATCAATCTAGGAGATGCTAG 59.789 42.308 2.20 2.20 34.65 3.42
363 364 6.014755 CACCAAGATCAATCTAGGAGATGCTA 60.015 42.308 0.00 0.00 34.65 3.49
364 365 4.906664 ACCAAGATCAATCTAGGAGATGCT 59.093 41.667 0.00 0.00 34.65 3.79
365 366 4.996122 CACCAAGATCAATCTAGGAGATGC 59.004 45.833 0.00 0.00 34.65 3.91
366 367 6.183360 TGTCACCAAGATCAATCTAGGAGATG 60.183 42.308 0.00 0.00 34.65 2.90
367 368 5.901853 TGTCACCAAGATCAATCTAGGAGAT 59.098 40.000 0.00 0.00 36.28 2.75
368 369 5.127845 GTGTCACCAAGATCAATCTAGGAGA 59.872 44.000 0.00 0.00 35.76 3.71
369 370 5.355596 GTGTCACCAAGATCAATCTAGGAG 58.644 45.833 0.00 0.00 35.76 3.69
370 371 4.142160 CGTGTCACCAAGATCAATCTAGGA 60.142 45.833 0.00 0.00 35.76 2.94
371 372 4.115516 CGTGTCACCAAGATCAATCTAGG 58.884 47.826 0.00 0.00 35.76 3.02
372 373 4.748892 ACGTGTCACCAAGATCAATCTAG 58.251 43.478 0.00 0.00 35.76 2.43
373 374 4.801330 ACGTGTCACCAAGATCAATCTA 57.199 40.909 0.00 0.00 35.76 1.98
374 375 3.685139 ACGTGTCACCAAGATCAATCT 57.315 42.857 0.00 0.00 39.22 2.40
375 376 3.865745 CCTACGTGTCACCAAGATCAATC 59.134 47.826 0.00 0.00 0.00 2.67
376 377 3.513912 TCCTACGTGTCACCAAGATCAAT 59.486 43.478 0.00 0.00 0.00 2.57
377 378 2.894765 TCCTACGTGTCACCAAGATCAA 59.105 45.455 0.00 0.00 0.00 2.57
378 379 2.521126 TCCTACGTGTCACCAAGATCA 58.479 47.619 0.00 0.00 0.00 2.92
379 380 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
380 381 4.345859 TTTTCCTACGTGTCACCAAGAT 57.654 40.909 0.00 0.00 0.00 2.40
381 382 3.823281 TTTTCCTACGTGTCACCAAGA 57.177 42.857 0.00 0.00 0.00 3.02
382 383 5.432885 AAATTTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
383 384 5.357314 TCAAAATTTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
384 385 4.882427 TCAAAATTTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
385 386 5.427036 TCAAAATTTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
386 387 7.924103 AATTCAAAATTTTCCTACGTGTCAC 57.076 32.000 0.00 0.00 0.00 3.67
389 390 8.921670 GCAATAATTCAAAATTTTCCTACGTGT 58.078 29.630 0.00 0.00 0.00 4.49
390 391 9.139174 AGCAATAATTCAAAATTTTCCTACGTG 57.861 29.630 0.00 0.00 0.00 4.49
395 396 9.705290 AACGTAGCAATAATTCAAAATTTTCCT 57.295 25.926 0.00 0.00 0.00 3.36
396 397 9.952341 GAACGTAGCAATAATTCAAAATTTTCC 57.048 29.630 0.00 0.00 0.00 3.13
397 398 9.952341 GGAACGTAGCAATAATTCAAAATTTTC 57.048 29.630 0.00 0.00 0.00 2.29
398 399 8.931775 GGGAACGTAGCAATAATTCAAAATTTT 58.068 29.630 0.00 0.00 0.00 1.82
399 400 7.547722 GGGGAACGTAGCAATAATTCAAAATTT 59.452 33.333 0.00 0.00 0.00 1.82
400 401 7.039270 GGGGAACGTAGCAATAATTCAAAATT 58.961 34.615 0.00 0.00 0.00 1.82
401 402 6.153680 TGGGGAACGTAGCAATAATTCAAAAT 59.846 34.615 0.00 0.00 0.00 1.82
402 403 5.477291 TGGGGAACGTAGCAATAATTCAAAA 59.523 36.000 0.00 0.00 0.00 2.44
403 404 5.010933 TGGGGAACGTAGCAATAATTCAAA 58.989 37.500 0.00 0.00 0.00 2.69
404 405 4.590918 TGGGGAACGTAGCAATAATTCAA 58.409 39.130 0.00 0.00 0.00 2.69
405 406 4.223556 TGGGGAACGTAGCAATAATTCA 57.776 40.909 0.00 0.00 0.00 2.57
406 407 4.396790 TGTTGGGGAACGTAGCAATAATTC 59.603 41.667 0.00 0.00 0.00 2.17
407 408 4.157105 GTGTTGGGGAACGTAGCAATAATT 59.843 41.667 0.00 0.00 0.00 1.40
408 409 3.692593 GTGTTGGGGAACGTAGCAATAAT 59.307 43.478 0.00 0.00 0.00 1.28
409 410 3.075884 GTGTTGGGGAACGTAGCAATAA 58.924 45.455 0.00 0.00 0.00 1.40
410 411 2.038689 TGTGTTGGGGAACGTAGCAATA 59.961 45.455 0.00 0.00 0.00 1.90
411 412 1.202830 TGTGTTGGGGAACGTAGCAAT 60.203 47.619 0.00 0.00 0.00 3.56
412 413 0.180642 TGTGTTGGGGAACGTAGCAA 59.819 50.000 0.00 0.00 0.00 3.91
413 414 0.398696 ATGTGTTGGGGAACGTAGCA 59.601 50.000 0.00 0.00 0.00 3.49
414 415 0.802494 CATGTGTTGGGGAACGTAGC 59.198 55.000 0.00 0.00 0.00 3.58
415 416 1.002659 TCCATGTGTTGGGGAACGTAG 59.997 52.381 0.00 0.00 46.45 3.51
416 417 1.057471 TCCATGTGTTGGGGAACGTA 58.943 50.000 0.00 0.00 46.45 3.57
417 418 0.536460 GTCCATGTGTTGGGGAACGT 60.536 55.000 0.00 0.00 46.45 3.99
418 419 1.241315 GGTCCATGTGTTGGGGAACG 61.241 60.000 0.00 0.00 46.45 3.95
419 420 0.178975 TGGTCCATGTGTTGGGGAAC 60.179 55.000 0.00 0.00 46.45 3.62
420 421 0.783206 ATGGTCCATGTGTTGGGGAA 59.217 50.000 2.68 0.00 46.45 3.97
421 422 0.331278 GATGGTCCATGTGTTGGGGA 59.669 55.000 9.76 0.00 46.45 4.81
422 423 0.332632 AGATGGTCCATGTGTTGGGG 59.667 55.000 9.76 0.00 46.45 4.96
423 424 2.923121 CTAGATGGTCCATGTGTTGGG 58.077 52.381 9.76 0.00 46.45 4.12
425 426 1.935873 CGCTAGATGGTCCATGTGTTG 59.064 52.381 9.76 1.88 0.00 3.33
426 427 1.831106 TCGCTAGATGGTCCATGTGTT 59.169 47.619 9.76 0.00 0.00 3.32
427 428 1.137086 GTCGCTAGATGGTCCATGTGT 59.863 52.381 9.76 0.00 0.00 3.72
428 429 1.858091 GTCGCTAGATGGTCCATGTG 58.142 55.000 9.76 1.81 0.00 3.21
429 430 0.385751 CGTCGCTAGATGGTCCATGT 59.614 55.000 9.76 8.10 0.00 3.21
439 440 0.372679 CGCTTGTAGTCGTCGCTAGA 59.627 55.000 0.00 0.00 0.00 2.43
447 448 1.361668 ATGCCAAGCGCTTGTAGTCG 61.362 55.000 39.50 27.84 38.85 4.18
558 559 1.790623 ACGTGTAAGCTTGTAACGCAG 59.209 47.619 22.41 12.81 37.76 5.18
695 706 8.757982 AACTTTAATATGATGAGATGCAACCT 57.242 30.769 0.00 0.00 0.00 3.50
696 707 9.241317 CAAACTTTAATATGATGAGATGCAACC 57.759 33.333 0.00 0.00 0.00 3.77
697 708 8.749499 GCAAACTTTAATATGATGAGATGCAAC 58.251 33.333 0.00 0.00 0.00 4.17
698 709 7.644945 CGCAAACTTTAATATGATGAGATGCAA 59.355 33.333 0.00 0.00 0.00 4.08
699 710 7.012232 TCGCAAACTTTAATATGATGAGATGCA 59.988 33.333 0.00 0.00 0.00 3.96
700 711 7.355017 TCGCAAACTTTAATATGATGAGATGC 58.645 34.615 0.00 0.00 0.00 3.91
701 712 9.720667 TTTCGCAAACTTTAATATGATGAGATG 57.279 29.630 0.00 0.00 0.00 2.90
737 767 7.361127 CACATAGGTTCGAGTCGATATTTACT 58.639 38.462 17.34 10.49 35.23 2.24
809 839 6.540914 TCCACTGTACCTTCTAAAACTTTGTG 59.459 38.462 0.00 0.00 0.00 3.33
824 854 5.364157 AGGATTCTTGTCTATCCACTGTACC 59.636 44.000 0.00 0.00 42.29 3.34
918 948 9.603298 CTACGTAGCGTTGATTCATAGTAAATA 57.397 33.333 10.14 0.00 41.54 1.40
931 961 2.525750 CGTTACCTACGTAGCGTTGA 57.474 50.000 17.41 6.50 45.14 3.18
986 1019 4.137879 CCATGCTCAGCTGGCTAC 57.862 61.111 22.36 8.50 0.00 3.58
1057 1090 2.992114 AGAGCGCTCGGGAAGTGT 60.992 61.111 30.39 8.81 37.82 3.55
1059 1092 2.361865 AGAGAGCGCTCGGGAAGT 60.362 61.111 30.39 13.23 45.98 3.01
1180 1213 2.726351 CGAGGTTGGAGAGGAGGGC 61.726 68.421 0.00 0.00 0.00 5.19
1860 1915 2.176792 CCGGCGCTGCTTTCTTTC 59.823 61.111 11.81 0.00 0.00 2.62
1906 1970 2.742372 GTGGTCTGCGGCGAACAT 60.742 61.111 12.98 0.00 32.46 2.71
1953 2017 1.666872 GCAGTTGCCGAGGTACGTT 60.667 57.895 0.00 0.00 40.78 3.99
2441 2519 4.600692 TGACCATCTCGAGACAAGAAAA 57.399 40.909 19.30 0.00 0.00 2.29
2443 2521 3.574396 ACTTGACCATCTCGAGACAAGAA 59.426 43.478 33.15 17.67 38.30 2.52
2448 2526 3.428316 GGAAGACTTGACCATCTCGAGAC 60.428 52.174 19.30 5.47 34.66 3.36
2478 2563 3.053455 GAGTGAAGAAGACTTGACCGTG 58.947 50.000 0.00 0.00 40.21 4.94
2499 4057 3.992427 GCATCTGCAAAAGAAAGGAAAGG 59.008 43.478 0.00 0.00 38.79 3.11
2625 4186 0.534412 AGCTGAAGATGACACCTCCG 59.466 55.000 0.00 0.00 0.00 4.63
2933 5821 8.621532 ACCGTATAAAATCTATGCACAATCAT 57.378 30.769 0.00 0.00 0.00 2.45
3008 5905 4.830046 AGTGAACCAGCGATGTCTATATCT 59.170 41.667 0.00 0.00 0.00 1.98
3025 5922 7.709613 TGAAAGGTCAGTTTTCTACTAGTGAAC 59.290 37.037 5.39 5.52 35.94 3.18
3084 5981 5.067674 GCATCAAGTTGCAATATTAGTCCCA 59.932 40.000 0.59 0.00 42.31 4.37
3125 6022 6.513806 TGAAACCCATCTGATGTTACATTG 57.486 37.500 15.95 0.00 0.00 2.82
3283 6180 9.770503 GCTATTTTCTATCGATAACTCATACGA 57.229 33.333 6.58 0.00 39.01 3.43
3284 6181 9.011407 GGCTATTTTCTATCGATAACTCATACG 57.989 37.037 6.58 0.00 0.00 3.06
3285 6182 9.856488 TGGCTATTTTCTATCGATAACTCATAC 57.144 33.333 6.58 0.00 0.00 2.39
3306 6203 3.197766 CCTGTGGTATTCTGAAGTGGCTA 59.802 47.826 0.00 0.00 0.00 3.93
3326 6223 5.766670 CCACATTATCATCTGCATACAACCT 59.233 40.000 0.00 0.00 0.00 3.50
3439 6336 5.925506 TCTAATCGTGTCCAGGTATCAAA 57.074 39.130 0.00 0.00 0.00 2.69
3443 6340 6.098409 ACTCAAATCTAATCGTGTCCAGGTAT 59.902 38.462 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.