Multiple sequence alignment - TraesCS7D01G100400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G100400 chr7D 100.000 4070 0 0 1 4070 60278086 60282155 0.000000e+00 7516.0
1 TraesCS7D01G100400 chr7D 89.435 407 11 5 3571 3976 52833573 52833198 6.120000e-133 484.0
2 TraesCS7D01G100400 chr7D 81.724 290 40 9 576 858 602823976 602823693 3.160000e-56 230.0
3 TraesCS7D01G100400 chr7A 90.155 3281 205 44 1 3212 64607425 64610656 0.000000e+00 4161.0
4 TraesCS7D01G100400 chr7A 85.526 76 10 1 259 334 200526983 200526909 1.210000e-10 78.7
5 TraesCS7D01G100400 chr5D 97.774 629 12 2 3205 3831 531508160 531507532 0.000000e+00 1083.0
6 TraesCS7D01G100400 chr5D 92.105 152 2 2 3825 3976 531505929 531505788 5.330000e-49 206.0
7 TraesCS7D01G100400 chr5D 86.792 53 5 2 2992 3042 434350564 434350512 1.580000e-04 58.4
8 TraesCS7D01G100400 chr5D 100.000 29 0 0 7 35 370592928 370592900 2.000000e-03 54.7
9 TraesCS7D01G100400 chr7B 90.206 827 54 10 1809 2614 2785237 2786057 0.000000e+00 1053.0
10 TraesCS7D01G100400 chr7B 94.070 371 18 4 1394 1762 2784688 2785056 9.880000e-156 560.0
11 TraesCS7D01G100400 chr7B 90.236 297 27 2 2708 3002 2785989 2786285 1.770000e-103 387.0
12 TraesCS7D01G100400 chr7B 95.767 189 8 0 1101 1289 2784423 2784611 5.110000e-79 305.0
13 TraesCS7D01G100400 chr7B 86.420 81 5 4 261 335 125554608 125554688 2.610000e-12 84.2
14 TraesCS7D01G100400 chr2D 93.483 445 24 4 3533 3976 22496411 22496851 0.000000e+00 656.0
15 TraesCS7D01G100400 chr2D 80.564 319 37 15 1393 1697 566833715 566834022 5.290000e-54 222.0
16 TraesCS7D01G100400 chr2D 82.129 263 32 8 575 822 632759380 632759642 1.150000e-50 211.0
17 TraesCS7D01G100400 chr2A 82.258 310 36 12 1393 1697 706641328 706641623 2.430000e-62 250.0
18 TraesCS7D01G100400 chr2A 81.884 276 37 8 1023 1289 706640979 706641250 1.900000e-53 220.0
19 TraesCS7D01G100400 chr2B 83.333 276 32 9 1023 1289 679812704 679812974 4.060000e-60 243.0
20 TraesCS7D01G100400 chr2B 81.290 310 39 12 1393 1697 679813078 679813373 2.450000e-57 233.0
21 TraesCS7D01G100400 chr4B 93.210 162 10 1 3051 3212 22220417 22220577 1.890000e-58 237.0
22 TraesCS7D01G100400 chr6D 82.117 274 34 7 576 834 454889536 454889263 1.900000e-53 220.0
23 TraesCS7D01G100400 chr6D 81.752 274 35 7 576 834 454923091 454922818 8.860000e-52 215.0
24 TraesCS7D01G100400 chr5B 81.387 274 36 9 576 834 8364006 8364279 4.120000e-50 209.0
25 TraesCS7D01G100400 chr6B 81.319 273 36 8 577 834 384834332 384834060 1.480000e-49 207.0
26 TraesCS7D01G100400 chr1B 80.916 262 32 10 578 822 328965113 328964853 1.490000e-44 191.0
27 TraesCS7D01G100400 chr4A 79.630 270 49 5 576 839 11649827 11649558 5.370000e-44 189.0
28 TraesCS7D01G100400 chr6A 79.926 269 42 11 576 834 65136015 65135749 1.930000e-43 187.0
29 TraesCS7D01G100400 chr6A 84.722 72 10 1 255 325 459601749 459601820 2.030000e-08 71.3
30 TraesCS7D01G100400 chr3D 88.321 137 15 1 3841 3976 64121012 64120876 3.260000e-36 163.0
31 TraesCS7D01G100400 chr4D 76.307 287 36 20 576 847 474975555 474975824 1.540000e-24 124.0
32 TraesCS7D01G100400 chr3B 84.286 70 7 4 793 859 789663235 789663167 9.440000e-07 65.8
33 TraesCS7D01G100400 chr1D 83.582 67 10 1 269 334 374452759 374452825 1.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G100400 chr7D 60278086 60282155 4069 False 7516.00 7516 100.00000 1 4070 1 chr7D.!!$F1 4069
1 TraesCS7D01G100400 chr7A 64607425 64610656 3231 False 4161.00 4161 90.15500 1 3212 1 chr7A.!!$F1 3211
2 TraesCS7D01G100400 chr5D 531505788 531508160 2372 True 644.50 1083 94.93950 3205 3976 2 chr5D.!!$R3 771
3 TraesCS7D01G100400 chr7B 2784423 2786285 1862 False 576.25 1053 92.56975 1101 3002 4 chr7B.!!$F2 1901
4 TraesCS7D01G100400 chr2A 706640979 706641623 644 False 235.00 250 82.07100 1023 1697 2 chr2A.!!$F1 674
5 TraesCS7D01G100400 chr2B 679812704 679813373 669 False 238.00 243 82.31150 1023 1697 2 chr2B.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.179111 TAAATCTGCACCTCTCGCGG 60.179 55.0 6.13 0.00 37.08 6.46 F
1293 1333 0.100682 CAGATCACAGGTACGGTCCG 59.899 60.0 10.48 10.48 31.98 4.79 F
2277 2557 0.257905 TGGCGCCTCTACTTCTAGGA 59.742 55.0 29.70 0.00 34.58 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2173 0.254462 CCTTGCCCTTCCTCTTCCTC 59.746 60.0 0.0 0.00 0.00 3.71 R
2656 2936 0.036388 TGCTGCTGCTGGTAAGTACC 60.036 55.0 17.0 0.17 40.94 3.34 R
3687 3969 0.678048 GACGGCCTCCAAGCAATCTT 60.678 55.0 0.0 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.838202 TCCCTCTTACGGAAGCAAATCT 59.162 45.455 1.22 0.00 32.21 2.40
40 41 1.266718 GCAAATCTGTGCCTCAACGAA 59.733 47.619 0.00 0.00 38.66 3.85
56 57 4.819630 TCAACGAAAAGTAAATCTGCACCT 59.180 37.500 0.00 0.00 0.00 4.00
63 64 0.179111 TAAATCTGCACCTCTCGCGG 60.179 55.000 6.13 0.00 37.08 6.46
147 148 3.198068 AGCAAATATGTGCCTCTACGTG 58.802 45.455 14.50 0.00 46.14 4.49
204 205 8.989653 AAACACGTTTATTTTCCTTTTTCTGA 57.010 26.923 0.00 0.00 0.00 3.27
278 280 2.575279 ACTCTCATGGGAGCAAATCTGT 59.425 45.455 22.95 0.00 41.13 3.41
283 285 2.479566 TGGGAGCAAATCTGTGTCTC 57.520 50.000 0.00 0.00 0.00 3.36
299 301 7.099764 TCTGTGTCTCCATGAGAAGTAAATTC 58.900 38.462 0.00 0.00 40.59 2.17
301 303 5.869888 GTGTCTCCATGAGAAGTAAATTCGT 59.130 40.000 0.00 0.00 40.59 3.85
303 305 4.870426 TCTCCATGAGAAGTAAATTCGTGC 59.130 41.667 0.00 0.00 43.16 5.34
311 313 6.643055 AGAAGTAAATTCGTGCCTCTCGCA 62.643 45.833 0.00 0.00 43.79 5.10
326 328 4.437820 CCTCTCGCAAAAGAAAGAAAAACG 59.562 41.667 0.00 0.00 0.00 3.60
330 332 3.241520 CGCAAAAGAAAGAAAAACGCGTT 60.242 39.130 20.79 20.79 35.75 4.84
354 356 5.975693 TTCGCCCATTTCTTTTCTTACAT 57.024 34.783 0.00 0.00 0.00 2.29
372 374 8.402798 TCTTACATGAAACATAAGGAAAAGCA 57.597 30.769 0.00 0.00 0.00 3.91
463 466 4.363991 AAAGAAATCCTGAGTGAGTGCT 57.636 40.909 0.00 0.00 0.00 4.40
491 494 1.004560 ACACATGACGGTGGCTGAG 60.005 57.895 0.00 0.00 43.08 3.35
551 554 1.073923 CCTTTATAGGAGCCCCGCAAT 59.926 52.381 0.00 0.00 45.05 3.56
565 575 1.362768 CGCAATGAGCAGCTAGTTGA 58.637 50.000 18.81 0.00 46.13 3.18
569 579 6.356767 CGCAATGAGCAGCTAGTTGATAGC 62.357 50.000 18.81 5.96 46.75 2.97
588 598 4.072088 CTCGGCGAACCAACGTGC 62.072 66.667 12.13 0.00 34.57 5.34
599 609 2.112297 AACGTGCGGTTGGATGGT 59.888 55.556 0.00 0.00 37.50 3.55
611 621 1.879575 TGGATGGTTAGGAGGACAGG 58.120 55.000 0.00 0.00 0.00 4.00
648 665 1.147817 AGGGTTCAAATCCTGGTGCTT 59.852 47.619 0.00 0.00 38.36 3.91
683 700 6.563422 TGAATTTATTTCAGGATTTCCAGCG 58.437 36.000 0.00 0.00 39.44 5.18
686 703 8.463930 AATTTATTTCAGGATTTCCAGCGATA 57.536 30.769 0.00 0.00 38.89 2.92
698 715 1.138859 CCAGCGATATGGGTTCAGTGA 59.861 52.381 0.00 0.00 36.64 3.41
734 751 2.543641 TCGACTACGAAGCATCTACGA 58.456 47.619 0.00 0.00 45.74 3.43
750 779 7.921745 AGCATCTACGATGATCAAGATGATATG 59.078 37.037 27.84 15.67 45.29 1.78
757 786 5.219343 TGATCAAGATGATATGACGGCTT 57.781 39.130 0.00 0.00 37.20 4.35
763 792 5.637006 AGATGATATGACGGCTTAGTCTC 57.363 43.478 0.00 0.00 41.47 3.36
779 808 9.685828 GGCTTAGTCTCTTGTAAATACTCATAG 57.314 37.037 0.00 0.00 0.00 2.23
785 814 8.921205 GTCTCTTGTAAATACTCATAGGGGTTA 58.079 37.037 0.00 0.00 0.00 2.85
793 822 2.838202 ACTCATAGGGGTTAGGTGTGTG 59.162 50.000 0.00 0.00 0.00 3.82
799 828 2.549282 GTTAGGTGTGTGTGCGCG 59.451 61.111 0.00 0.00 0.00 6.86
802 831 1.090625 TTAGGTGTGTGTGCGCGTTT 61.091 50.000 8.43 0.00 0.00 3.60
807 836 1.722464 GTGTGTGTGCGCGTTTATAGA 59.278 47.619 8.43 0.00 0.00 1.98
813 842 4.738252 TGTGTGCGCGTTTATAGAGATAAG 59.262 41.667 8.43 0.00 0.00 1.73
822 851 6.581542 GCGTTTATAGAGATAAGTGTATGCGT 59.418 38.462 0.00 0.00 0.00 5.24
1118 1154 1.611491 GCGTGGAAACCATGGAAGAAA 59.389 47.619 21.47 0.00 40.61 2.52
1186 1223 0.179100 CGACGGACATGGAGCTCATT 60.179 55.000 17.19 0.00 32.92 2.57
1289 1329 0.103208 GGAGCAGATCACAGGTACGG 59.897 60.000 0.00 0.00 0.00 4.02
1290 1330 0.818296 GAGCAGATCACAGGTACGGT 59.182 55.000 0.00 0.00 37.10 4.83
1292 1332 0.179108 GCAGATCACAGGTACGGTCC 60.179 60.000 0.00 0.00 31.98 4.46
1293 1333 0.100682 CAGATCACAGGTACGGTCCG 59.899 60.000 10.48 10.48 31.98 4.79
1300 1340 2.125961 AGGTACGGTCCGATGCTCC 61.126 63.158 20.51 11.82 0.00 4.70
1301 1341 2.125961 GGTACGGTCCGATGCTCCT 61.126 63.158 20.51 0.00 0.00 3.69
1304 1344 3.917760 CGGTCCGATGCTCCTCCC 61.918 72.222 4.91 0.00 0.00 4.30
1305 1345 3.917760 GGTCCGATGCTCCTCCCG 61.918 72.222 0.00 0.00 0.00 5.14
1306 1346 2.833582 GTCCGATGCTCCTCCCGA 60.834 66.667 0.00 0.00 0.00 5.14
1307 1347 2.198703 TCCGATGCTCCTCCCGAT 59.801 61.111 0.00 0.00 0.00 4.18
1310 1350 1.539560 CCGATGCTCCTCCCGATGAT 61.540 60.000 0.00 0.00 0.00 2.45
1318 1358 0.747255 CCTCCCGATGATGACGAGTT 59.253 55.000 0.00 0.00 0.00 3.01
1325 1381 3.679980 CCGATGATGACGAGTTCTTGTTT 59.320 43.478 0.00 0.00 0.00 2.83
1341 1418 5.221880 TCTTGTTTCTTGATTTGGAATGCG 58.778 37.500 0.00 0.00 0.00 4.73
1344 1421 4.278170 TGTTTCTTGATTTGGAATGCGAGT 59.722 37.500 0.00 0.00 0.00 4.18
1350 1444 5.389859 TGATTTGGAATGCGAGTTTGATT 57.610 34.783 0.00 0.00 0.00 2.57
1353 1447 7.374272 TGATTTGGAATGCGAGTTTGATTAAA 58.626 30.769 0.00 0.00 0.00 1.52
1376 1481 3.818210 ACAGCGTAGAGATCGATCTGATT 59.182 43.478 31.88 18.40 37.47 2.57
1378 1483 5.218885 CAGCGTAGAGATCGATCTGATTTT 58.781 41.667 31.88 13.84 37.47 1.82
1380 1485 7.026562 CAGCGTAGAGATCGATCTGATTTTAT 58.973 38.462 31.88 5.91 37.47 1.40
1381 1486 7.008176 CAGCGTAGAGATCGATCTGATTTTATG 59.992 40.741 31.88 18.98 37.47 1.90
1382 1487 6.252441 GCGTAGAGATCGATCTGATTTTATGG 59.748 42.308 31.88 11.73 37.47 2.74
1383 1488 7.530863 CGTAGAGATCGATCTGATTTTATGGA 58.469 38.462 31.88 1.54 37.47 3.41
1384 1489 7.483375 CGTAGAGATCGATCTGATTTTATGGAC 59.517 40.741 31.88 12.74 37.47 4.02
1385 1490 6.385843 AGAGATCGATCTGATTTTATGGACG 58.614 40.000 31.88 0.00 37.47 4.79
1388 1493 5.966636 TCGATCTGATTTTATGGACGTTG 57.033 39.130 0.00 0.00 0.00 4.10
1390 1495 4.552767 CGATCTGATTTTATGGACGTTGGC 60.553 45.833 0.00 0.00 0.00 4.52
1474 1590 2.098233 CAAGTACGCGACGGGCAAT 61.098 57.895 15.93 0.00 43.84 3.56
1603 1719 1.582968 GCTCGTGTTCTACACCGGA 59.417 57.895 9.46 0.00 45.93 5.14
1857 2110 1.275010 TGCACGATACAGAGGCAGAAA 59.725 47.619 0.00 0.00 0.00 2.52
1859 2112 2.742053 GCACGATACAGAGGCAGAAAAA 59.258 45.455 0.00 0.00 0.00 1.94
2071 2342 4.230603 AGCAGCATGATGAACCGG 57.769 55.556 16.67 0.00 39.69 5.28
2098 2369 4.147449 CGCCATGCCCAGAGACGA 62.147 66.667 0.00 0.00 0.00 4.20
2115 2386 2.860735 GACGATGATACCAGCACAAGAC 59.139 50.000 0.00 0.00 0.00 3.01
2189 2460 4.826733 GCTCTCAGATTCAGAGATGGTAGA 59.173 45.833 8.98 0.00 41.01 2.59
2190 2461 5.477984 GCTCTCAGATTCAGAGATGGTAGAT 59.522 44.000 8.98 0.00 41.01 1.98
2191 2462 6.349611 GCTCTCAGATTCAGAGATGGTAGATC 60.350 46.154 8.98 0.00 41.01 2.75
2192 2463 5.704978 TCTCAGATTCAGAGATGGTAGATCG 59.295 44.000 4.78 0.00 37.22 3.69
2201 2475 2.032620 GATGGTAGATCGTCCTGGTGT 58.967 52.381 9.83 0.00 0.00 4.16
2274 2554 0.952280 CGATGGCGCCTCTACTTCTA 59.048 55.000 29.70 3.35 0.00 2.10
2275 2555 1.068885 CGATGGCGCCTCTACTTCTAG 60.069 57.143 29.70 3.68 0.00 2.43
2276 2556 1.271102 GATGGCGCCTCTACTTCTAGG 59.729 57.143 29.70 0.00 35.86 3.02
2277 2557 0.257905 TGGCGCCTCTACTTCTAGGA 59.742 55.000 29.70 0.00 34.58 2.94
2278 2558 0.669619 GGCGCCTCTACTTCTAGGAC 59.330 60.000 22.15 0.00 34.58 3.85
2279 2559 1.682740 GCGCCTCTACTTCTAGGACT 58.317 55.000 0.00 0.00 34.58 3.85
2338 2618 1.342819 CCACCAGCTACCTAGATGCTC 59.657 57.143 0.00 0.00 38.33 4.26
2340 2620 1.062886 ACCAGCTACCTAGATGCTCCA 60.063 52.381 0.00 0.00 38.33 3.86
2377 2657 2.680841 GCATTCAGTTACGGTTATGGCA 59.319 45.455 0.00 0.00 0.00 4.92
2394 2674 2.281692 AGCGCTGCACATCAACCA 60.282 55.556 10.39 0.00 0.00 3.67
2397 2677 2.177531 GCTGCACATCAACCAGCG 59.822 61.111 0.00 0.00 41.99 5.18
2412 2692 0.872388 CAGCGGGTCACCTAAACAAC 59.128 55.000 0.00 0.00 33.28 3.32
2471 2751 2.032550 GCACCAGCAACAGCACATATAG 59.967 50.000 0.00 0.00 41.58 1.31
2513 2793 2.758089 CCGCTGGCAGCAGTTCATC 61.758 63.158 35.94 7.34 42.58 2.92
2514 2794 1.744368 CGCTGGCAGCAGTTCATCT 60.744 57.895 35.94 0.00 42.58 2.90
2617 2897 3.276091 CACACGCCGCTGGAACAA 61.276 61.111 0.00 0.00 38.70 2.83
2618 2898 3.276846 ACACGCCGCTGGAACAAC 61.277 61.111 0.00 0.00 38.70 3.32
2619 2899 4.025401 CACGCCGCTGGAACAACC 62.025 66.667 0.00 0.00 38.70 3.77
2627 2907 2.909965 TGGAACAACCAAGGCCGC 60.910 61.111 0.00 0.00 46.75 6.53
2628 2908 3.680786 GGAACAACCAAGGCCGCC 61.681 66.667 0.00 0.00 38.79 6.13
2629 2909 4.038080 GAACAACCAAGGCCGCCG 62.038 66.667 3.05 0.00 0.00 6.46
2655 2935 1.117142 ACAAGTTGGCCAGCAGCAAT 61.117 50.000 22.64 0.00 46.50 3.56
2656 2936 0.669318 CAAGTTGGCCAGCAGCAATG 60.669 55.000 22.64 8.43 46.50 2.82
2703 2983 2.597510 GCCGGAACCAACAAGGCT 60.598 61.111 5.05 0.00 44.06 4.58
2704 2984 2.919494 GCCGGAACCAACAAGGCTG 61.919 63.158 5.05 0.00 44.06 4.85
2712 2992 0.890683 CCAACAAGGCTGATGGAACC 59.109 55.000 7.51 0.00 46.03 3.62
2722 3002 2.719739 CTGATGGAACCAGCAATCTGT 58.280 47.619 12.73 0.00 41.99 3.41
2725 3005 0.770499 TGGAACCAGCAATCTGTCCA 59.230 50.000 1.85 1.85 40.87 4.02
2726 3006 1.355381 TGGAACCAGCAATCTGTCCAT 59.645 47.619 1.85 0.00 39.29 3.41
2824 3104 0.815213 GATGAGCAGCGGCATTGGTA 60.815 55.000 12.44 0.00 44.61 3.25
2826 3106 0.607762 TGAGCAGCGGCATTGGTAAA 60.608 50.000 12.44 0.00 44.61 2.01
2863 3143 1.169577 ACAGGTAGAGCTGTGAGACG 58.830 55.000 13.32 0.00 31.95 4.18
2864 3144 0.453793 CAGGTAGAGCTGTGAGACGG 59.546 60.000 0.00 0.00 0.00 4.79
2866 3146 1.064314 AGGTAGAGCTGTGAGACGGAT 60.064 52.381 0.00 0.00 0.00 4.18
2900 3181 6.208204 CCAGAGAAAAGATTTGTCAGATGGTT 59.792 38.462 3.30 0.00 0.00 3.67
2922 3203 2.027745 AGGGGATATATGACTTGCAGCG 60.028 50.000 0.00 0.00 0.00 5.18
2943 3224 2.414824 GGAGAGCACTCACTAGTTGTCG 60.415 54.545 13.37 0.00 44.22 4.35
2945 3226 2.226912 AGAGCACTCACTAGTTGTCGTC 59.773 50.000 0.00 0.00 31.97 4.20
3004 3286 5.067273 TGCTTTAGGATTGTTCGGAGAAAA 58.933 37.500 0.00 0.00 45.90 2.29
3009 3291 8.680039 TTTAGGATTGTTCGGAGAAAAAGTTA 57.320 30.769 0.00 0.00 45.90 2.24
3194 3476 5.336213 GCAATCCACTCATCAACATTCAGTT 60.336 40.000 0.00 0.00 42.42 3.16
3200 3482 9.685276 TCCACTCATCAACATTCAGTTTATATT 57.315 29.630 0.00 0.00 38.74 1.28
3247 3529 2.037649 CGATGATACACGAAGTCGCTC 58.962 52.381 0.00 0.00 41.61 5.03
3331 3613 1.019673 CCAATGGATGCCTCTGTTCG 58.980 55.000 0.00 0.00 0.00 3.95
3477 3759 0.249868 TTCGTGGACTCAACCAGCTG 60.250 55.000 6.78 6.78 40.85 4.24
3553 3835 4.504514 GGCTGGCATGATTCTTAGAGATCA 60.505 45.833 0.00 8.64 0.00 2.92
3620 3902 1.281287 ACTGATGCACTGGAAGCAGAT 59.719 47.619 9.71 0.00 46.36 2.90
3649 3931 8.432013 ACTTGCAATAAAAGAGGGAATTTCTTT 58.568 29.630 0.00 0.00 44.47 2.52
3687 3969 8.103305 GGAGCAATTTACCCATTGATATAGAGA 58.897 37.037 0.00 0.00 36.39 3.10
3712 3995 0.178068 GCTTGGAGGCCGTCTCAATA 59.822 55.000 1.71 0.00 44.19 1.90
3766 4049 8.830201 AGTATGCATTCATTGTTAGAGAGATC 57.170 34.615 3.54 0.00 34.22 2.75
3813 4096 5.576447 TCTTGTATTGCTCATACTCGTCA 57.424 39.130 7.78 0.00 38.96 4.35
3821 4104 4.176271 TGCTCATACTCGTCAGAATTGTG 58.824 43.478 0.00 0.00 0.00 3.33
3928 5821 5.278463 CCTGAAAATTGTTGGACGAGATTGT 60.278 40.000 0.00 0.00 0.00 2.71
3929 5822 6.072728 CCTGAAAATTGTTGGACGAGATTGTA 60.073 38.462 0.00 0.00 0.00 2.41
3930 5823 7.265647 TGAAAATTGTTGGACGAGATTGTAA 57.734 32.000 0.00 0.00 0.00 2.41
3931 5824 7.359595 TGAAAATTGTTGGACGAGATTGTAAG 58.640 34.615 0.00 0.00 0.00 2.34
3932 5825 7.227711 TGAAAATTGTTGGACGAGATTGTAAGA 59.772 33.333 0.00 0.00 0.00 2.10
3933 5826 6.481954 AATTGTTGGACGAGATTGTAAGAC 57.518 37.500 0.00 0.00 0.00 3.01
3934 5827 4.866508 TGTTGGACGAGATTGTAAGACT 57.133 40.909 0.00 0.00 0.00 3.24
3935 5828 4.556233 TGTTGGACGAGATTGTAAGACTG 58.444 43.478 0.00 0.00 0.00 3.51
3965 5858 6.933130 TGAGTGATACAAGAATTATTTCGCG 58.067 36.000 0.00 0.00 36.93 5.87
3966 5859 5.738370 AGTGATACAAGAATTATTTCGCGC 58.262 37.500 0.00 0.00 36.93 6.86
3970 5863 7.007905 GTGATACAAGAATTATTTCGCGCAAAA 59.992 33.333 8.75 0.39 36.93 2.44
3999 5892 8.461249 AATCTTTTCCTCTATGATGAATGTGG 57.539 34.615 0.00 0.00 0.00 4.17
4000 5893 6.962182 TCTTTTCCTCTATGATGAATGTGGT 58.038 36.000 0.00 0.00 0.00 4.16
4001 5894 7.405292 TCTTTTCCTCTATGATGAATGTGGTT 58.595 34.615 0.00 0.00 0.00 3.67
4002 5895 7.554118 TCTTTTCCTCTATGATGAATGTGGTTC 59.446 37.037 0.00 0.00 37.35 3.62
4003 5896 6.566079 TTCCTCTATGATGAATGTGGTTCT 57.434 37.500 0.00 0.00 37.72 3.01
4004 5897 5.922053 TCCTCTATGATGAATGTGGTTCTG 58.078 41.667 0.00 0.00 37.72 3.02
4005 5898 4.514441 CCTCTATGATGAATGTGGTTCTGC 59.486 45.833 0.00 0.00 37.72 4.26
4006 5899 5.363562 TCTATGATGAATGTGGTTCTGCT 57.636 39.130 0.00 0.00 37.72 4.24
4007 5900 5.748402 TCTATGATGAATGTGGTTCTGCTT 58.252 37.500 0.00 0.00 37.72 3.91
4008 5901 6.182627 TCTATGATGAATGTGGTTCTGCTTT 58.817 36.000 0.00 0.00 37.72 3.51
4009 5902 5.733620 ATGATGAATGTGGTTCTGCTTTT 57.266 34.783 0.00 0.00 37.72 2.27
4010 5903 5.534207 TGATGAATGTGGTTCTGCTTTTT 57.466 34.783 0.00 0.00 37.72 1.94
4056 5949 7.286215 TGTTAGAATAGCTGGTACTATCACC 57.714 40.000 0.00 0.00 39.20 4.02
4057 5950 6.267014 TGTTAGAATAGCTGGTACTATCACCC 59.733 42.308 0.00 0.00 37.84 4.61
4058 5951 4.816126 AGAATAGCTGGTACTATCACCCA 58.184 43.478 0.00 0.00 37.84 4.51
4059 5952 5.216622 AGAATAGCTGGTACTATCACCCAA 58.783 41.667 0.00 0.00 37.84 4.12
4060 5953 5.846714 AGAATAGCTGGTACTATCACCCAAT 59.153 40.000 0.00 0.00 37.84 3.16
4061 5954 3.845781 AGCTGGTACTATCACCCAATG 57.154 47.619 0.00 0.00 37.84 2.82
4062 5955 3.384168 AGCTGGTACTATCACCCAATGA 58.616 45.455 0.00 0.00 43.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.895530 TGCTTCCGTAAGAGGGACAG 59.104 55.000 0.00 0.00 43.02 3.51
7 8 2.939103 CAGATTTGCTTCCGTAAGAGGG 59.061 50.000 0.00 0.00 43.02 4.30
11 12 2.159517 GGCACAGATTTGCTTCCGTAAG 60.160 50.000 0.00 0.00 42.56 2.34
14 15 0.250901 AGGCACAGATTTGCTTCCGT 60.251 50.000 0.00 0.00 42.56 4.69
27 28 4.819630 AGATTTACTTTTCGTTGAGGCACA 59.180 37.500 0.00 0.00 0.00 4.57
40 41 3.003480 GCGAGAGGTGCAGATTTACTTT 58.997 45.455 0.00 0.00 0.00 2.66
84 85 2.354510 TGCCTCTCGAAAAACACAACAG 59.645 45.455 0.00 0.00 0.00 3.16
86 87 2.096819 TGTGCCTCTCGAAAAACACAAC 59.903 45.455 8.13 0.00 35.28 3.32
89 90 2.540973 GGTTGTGCCTCTCGAAAAACAC 60.541 50.000 0.00 0.00 0.00 3.32
120 121 3.698040 AGAGGCACATATTTGCTTCCTTG 59.302 43.478 19.06 0.00 46.96 3.61
147 148 4.930463 GCTAGAGGCACAGTTTTACTTC 57.070 45.455 0.00 0.00 41.35 3.01
184 185 7.591426 CACCTCTCAGAAAAAGGAAAATAAACG 59.409 37.037 0.00 0.00 34.16 3.60
235 237 9.634021 AGAGTCACCTCTTAGAAAAAGAAAAAT 57.366 29.630 0.00 0.00 46.08 1.82
263 265 2.356535 GGAGACACAGATTTGCTCCCAT 60.357 50.000 0.00 0.00 39.33 4.00
264 266 1.003580 GGAGACACAGATTTGCTCCCA 59.996 52.381 0.00 0.00 39.33 4.37
283 285 3.941483 AGGCACGAATTTACTTCTCATGG 59.059 43.478 0.00 0.00 0.00 3.66
303 305 4.437820 CGTTTTTCTTTCTTTTGCGAGAGG 59.562 41.667 0.00 0.00 0.00 3.69
330 332 6.150396 TGTAAGAAAAGAAATGGGCGAAAA 57.850 33.333 0.00 0.00 0.00 2.29
354 356 3.894427 TGCCTGCTTTTCCTTATGTTTCA 59.106 39.130 0.00 0.00 0.00 2.69
363 365 2.765699 TCAGTTTTTGCCTGCTTTTCCT 59.234 40.909 0.00 0.00 0.00 3.36
370 372 1.599071 GGCTTTTCAGTTTTTGCCTGC 59.401 47.619 0.00 0.00 37.58 4.85
372 374 3.625649 TTGGCTTTTCAGTTTTTGCCT 57.374 38.095 0.00 0.00 40.82 4.75
463 466 2.021584 GTCATGTGTCGCGTGCTGA 61.022 57.895 5.77 0.64 34.19 4.26
469 472 3.478394 CCACCGTCATGTGTCGCG 61.478 66.667 0.00 0.00 34.35 5.87
491 494 0.503117 GCTCGTCACTTGACACGTTC 59.497 55.000 9.94 0.00 44.99 3.95
565 575 0.179108 GTTGGTTCGCCGAGAGCTAT 60.179 55.000 0.00 0.00 41.18 2.97
569 579 2.049433 ACGTTGGTTCGCCGAGAG 60.049 61.111 0.00 0.00 41.18 3.20
588 598 1.134491 GTCCTCCTAACCATCCAACCG 60.134 57.143 0.00 0.00 0.00 4.44
611 621 1.763770 CTGGTGGGCTGGGATATCC 59.236 63.158 13.87 13.87 0.00 2.59
672 689 2.568623 ACCCATATCGCTGGAAATCC 57.431 50.000 0.00 0.00 38.69 3.01
673 690 3.476552 TGAACCCATATCGCTGGAAATC 58.523 45.455 0.64 0.00 38.69 2.17
679 696 2.101415 TCTCACTGAACCCATATCGCTG 59.899 50.000 0.00 0.00 0.00 5.18
683 700 4.219115 TCTCCTCTCACTGAACCCATATC 58.781 47.826 0.00 0.00 0.00 1.63
686 703 2.630889 TCTCCTCTCACTGAACCCAT 57.369 50.000 0.00 0.00 0.00 4.00
698 715 0.034380 TCGACGGGAACATCTCCTCT 60.034 55.000 0.00 0.00 44.68 3.69
716 733 4.469625 TCATCGTAGATGCTTCGTAGTC 57.530 45.455 5.23 0.00 45.12 2.59
724 741 5.718724 TCATCTTGATCATCGTAGATGCT 57.281 39.130 22.34 0.00 45.12 3.79
725 742 7.919621 TCATATCATCTTGATCATCGTAGATGC 59.080 37.037 22.34 0.00 42.24 3.91
727 744 8.127954 CGTCATATCATCTTGATCATCGTAGAT 58.872 37.037 0.00 0.00 38.83 1.98
728 745 7.414540 CCGTCATATCATCTTGATCATCGTAGA 60.415 40.741 0.00 0.00 38.26 2.59
734 751 5.417754 AGCCGTCATATCATCTTGATCAT 57.582 39.130 0.00 0.00 38.26 2.45
750 779 6.562518 AGTATTTACAAGAGACTAAGCCGTC 58.437 40.000 0.00 0.00 0.00 4.79
757 786 8.287350 ACCCCTATGAGTATTTACAAGAGACTA 58.713 37.037 0.00 0.00 0.00 2.59
763 792 7.931948 CACCTAACCCCTATGAGTATTTACAAG 59.068 40.741 0.00 0.00 0.00 3.16
779 808 1.964373 CGCACACACACCTAACCCC 60.964 63.158 0.00 0.00 0.00 4.95
781 810 2.943653 GCGCACACACACCTAACC 59.056 61.111 0.30 0.00 0.00 2.85
785 814 0.882927 ATAAACGCGCACACACACCT 60.883 50.000 5.73 0.00 0.00 4.00
793 822 4.738740 ACACTTATCTCTATAAACGCGCAC 59.261 41.667 5.73 0.00 0.00 5.34
799 828 8.798748 ACACGCATACACTTATCTCTATAAAC 57.201 34.615 0.00 0.00 0.00 2.01
813 842 7.869016 AACACTCATATATACACGCATACAC 57.131 36.000 0.00 0.00 0.00 2.90
878 910 1.133294 TCCAAGAAAACTCCCAACCCC 60.133 52.381 0.00 0.00 0.00 4.95
1118 1154 0.751643 AGCACCAAACGTTGCTTCCT 60.752 50.000 6.64 0.00 33.34 3.36
1147 1184 4.832608 GCGAAGTGGTAGCCGGGG 62.833 72.222 2.18 0.00 0.00 5.73
1186 1223 3.066190 CGGCGGAGGTAGTGGACA 61.066 66.667 0.00 0.00 0.00 4.02
1289 1329 2.203771 ATCGGGAGGAGCATCGGAC 61.204 63.158 0.00 0.00 34.37 4.79
1290 1330 2.198703 ATCGGGAGGAGCATCGGA 59.801 61.111 0.00 0.00 34.37 4.55
1292 1332 0.389556 CATCATCGGGAGGAGCATCG 60.390 60.000 0.00 0.00 34.37 3.84
1293 1333 0.972134 TCATCATCGGGAGGAGCATC 59.028 55.000 0.00 0.00 31.61 3.91
1300 1340 1.678627 AGAACTCGTCATCATCGGGAG 59.321 52.381 0.00 0.00 32.71 4.30
1301 1341 1.763968 AGAACTCGTCATCATCGGGA 58.236 50.000 0.00 0.00 32.71 5.14
1304 1344 4.623167 AGAAACAAGAACTCGTCATCATCG 59.377 41.667 0.00 0.00 0.00 3.84
1305 1345 6.146184 TCAAGAAACAAGAACTCGTCATCATC 59.854 38.462 0.00 0.00 0.00 2.92
1306 1346 5.991606 TCAAGAAACAAGAACTCGTCATCAT 59.008 36.000 0.00 0.00 0.00 2.45
1307 1347 5.356426 TCAAGAAACAAGAACTCGTCATCA 58.644 37.500 0.00 0.00 0.00 3.07
1310 1350 6.458206 CCAAATCAAGAAACAAGAACTCGTCA 60.458 38.462 0.00 0.00 0.00 4.35
1318 1358 5.009510 TCGCATTCCAAATCAAGAAACAAGA 59.990 36.000 0.00 0.00 0.00 3.02
1325 1381 4.518590 TCAAACTCGCATTCCAAATCAAGA 59.481 37.500 0.00 0.00 0.00 3.02
1341 1418 7.347508 TCTCTACGCTGTTTTAATCAAACTC 57.652 36.000 0.00 0.00 44.68 3.01
1344 1421 6.809689 TCGATCTCTACGCTGTTTTAATCAAA 59.190 34.615 0.00 0.00 0.00 2.69
1350 1444 5.296035 TCAGATCGATCTCTACGCTGTTTTA 59.704 40.000 25.00 0.00 34.22 1.52
1353 1447 3.206964 TCAGATCGATCTCTACGCTGTT 58.793 45.455 25.00 0.00 34.22 3.16
1360 1454 7.175119 ACGTCCATAAAATCAGATCGATCTCTA 59.825 37.037 25.00 16.18 34.22 2.43
1376 1481 3.906998 CAACATTGCCAACGTCCATAAA 58.093 40.909 0.00 0.00 0.00 1.40
1390 1495 3.571571 CATGAACACCTCTGCAACATTG 58.428 45.455 0.00 0.00 0.00 2.82
1705 1821 3.493503 CGTAGGACGAAGGGCAATTAATC 59.506 47.826 0.00 0.00 46.05 1.75
1706 1822 3.463944 CGTAGGACGAAGGGCAATTAAT 58.536 45.455 0.00 0.00 46.05 1.40
1707 1823 2.896168 CGTAGGACGAAGGGCAATTAA 58.104 47.619 0.00 0.00 46.05 1.40
1709 1825 0.743345 GCGTAGGACGAAGGGCAATT 60.743 55.000 2.65 0.00 46.05 2.32
1902 2173 0.254462 CCTTGCCCTTCCTCTTCCTC 59.746 60.000 0.00 0.00 0.00 3.71
2097 2368 3.866651 ACAGTCTTGTGCTGGTATCATC 58.133 45.455 0.00 0.00 38.22 2.92
2098 2369 3.988976 ACAGTCTTGTGCTGGTATCAT 57.011 42.857 0.00 0.00 38.22 2.45
2115 2386 1.215647 GCCTGGACCGTAGTCACAG 59.784 63.158 0.00 1.15 45.48 3.66
2189 2460 1.003580 AGCATGAAACACCAGGACGAT 59.996 47.619 0.00 0.00 0.00 3.73
2190 2461 0.396435 AGCATGAAACACCAGGACGA 59.604 50.000 0.00 0.00 0.00 4.20
2191 2462 1.732259 GTAGCATGAAACACCAGGACG 59.268 52.381 0.00 0.00 0.00 4.79
2192 2463 1.732259 CGTAGCATGAAACACCAGGAC 59.268 52.381 0.00 0.00 0.00 3.85
2201 2475 3.342719 TCATCAAAGCCGTAGCATGAAA 58.657 40.909 0.00 0.00 43.56 2.69
2274 2554 5.108187 TGTAGTCGTTGTATCCTAGTCCT 57.892 43.478 0.00 0.00 0.00 3.85
2275 2555 4.261114 GCTGTAGTCGTTGTATCCTAGTCC 60.261 50.000 0.00 0.00 0.00 3.85
2276 2556 4.334759 TGCTGTAGTCGTTGTATCCTAGTC 59.665 45.833 0.00 0.00 0.00 2.59
2277 2557 4.096081 GTGCTGTAGTCGTTGTATCCTAGT 59.904 45.833 0.00 0.00 0.00 2.57
2278 2558 4.599047 GTGCTGTAGTCGTTGTATCCTAG 58.401 47.826 0.00 0.00 0.00 3.02
2279 2559 3.064408 CGTGCTGTAGTCGTTGTATCCTA 59.936 47.826 0.00 0.00 0.00 2.94
2377 2657 2.281692 TGGTTGATGTGCAGCGCT 60.282 55.556 2.64 2.64 0.00 5.92
2394 2674 0.601841 CGTTGTTTAGGTGACCCGCT 60.602 55.000 0.00 0.00 35.12 5.52
2397 2677 3.711937 ACCGTTGTTTAGGTGACCC 57.288 52.632 0.00 0.00 39.66 4.46
2403 2683 0.435769 CGTACGCACCGTTGTTTAGG 59.564 55.000 0.52 0.00 41.54 2.69
2406 2686 2.627555 GCGTACGCACCGTTGTTT 59.372 55.556 33.90 0.00 41.54 2.83
2471 2751 2.358737 AGTGCTGCTGCGGGTAAC 60.359 61.111 10.99 3.10 43.34 2.50
2509 2789 2.159043 GCTGCTGCAGGTAAGTAGATGA 60.159 50.000 29.05 0.00 39.41 2.92
2513 2793 3.840831 TGCTGCTGCAGGTAAGTAG 57.159 52.632 29.05 4.36 45.31 2.57
2571 2851 5.842907 TGCTGCTGGTAAGTATATGTACTG 58.157 41.667 2.55 0.00 40.24 2.74
2612 2892 4.038080 CGGCGGCCTTGGTTGTTC 62.038 66.667 18.34 0.00 0.00 3.18
2623 2903 4.038080 CTTGTTGGTTCCGGCGGC 62.038 66.667 23.83 8.24 0.00 6.53
2624 2904 2.190841 AACTTGTTGGTTCCGGCGG 61.191 57.895 22.51 22.51 0.00 6.13
2625 2905 1.008995 CAACTTGTTGGTTCCGGCG 60.009 57.895 0.00 0.00 0.00 6.46
2626 2906 1.362355 CCAACTTGTTGGTTCCGGC 59.638 57.895 20.87 0.00 37.32 6.13
2627 2907 1.362355 GCCAACTTGTTGGTTCCGG 59.638 57.895 26.99 0.00 43.90 5.14
2628 2908 1.362355 GGCCAACTTGTTGGTTCCG 59.638 57.895 26.99 7.99 43.90 4.30
2629 2909 0.389025 CTGGCCAACTTGTTGGTTCC 59.611 55.000 26.99 21.72 43.90 3.62
2656 2936 0.036388 TGCTGCTGCTGGTAAGTACC 60.036 55.000 17.00 0.17 40.94 3.34
2703 2983 2.618816 GGACAGATTGCTGGTTCCATCA 60.619 50.000 0.00 0.00 46.60 3.07
2704 2984 2.019984 GGACAGATTGCTGGTTCCATC 58.980 52.381 0.00 0.00 46.60 3.51
2719 2999 7.685398 AGTATATGTACTGTTGCTGATGGACAG 60.685 40.741 0.71 1.51 42.88 3.51
2722 3002 6.731292 AGTATATGTACTGTTGCTGATGGA 57.269 37.500 0.71 0.00 39.66 3.41
2725 3005 8.018537 TGGTAAGTATATGTACTGTTGCTGAT 57.981 34.615 2.55 0.00 40.24 2.90
2726 3006 7.412853 TGGTAAGTATATGTACTGTTGCTGA 57.587 36.000 2.55 0.00 40.24 4.26
2790 3070 0.982852 TCATCGCTCCCCTGACCAAT 60.983 55.000 0.00 0.00 0.00 3.16
2824 3104 2.042831 GCTGCACATCGCTCCCTTT 61.043 57.895 0.00 0.00 43.06 3.11
2826 3106 2.060383 TAGCTGCACATCGCTCCCT 61.060 57.895 1.02 0.00 43.06 4.20
2843 3123 2.357075 CGTCTCACAGCTCTACCTGTA 58.643 52.381 0.00 0.00 43.85 2.74
2883 3164 4.540099 TCCCCTAACCATCTGACAAATCTT 59.460 41.667 0.00 0.00 0.00 2.40
2900 3181 3.195610 CGCTGCAAGTCATATATCCCCTA 59.804 47.826 0.00 0.00 35.30 3.53
2922 3203 2.414824 CGACAACTAGTGAGTGCTCTCC 60.415 54.545 13.00 4.98 39.75 3.71
2943 3224 4.180496 CCCTAACGGCGAGTTGAC 57.820 61.111 16.62 0.00 44.01 3.18
3009 3291 7.062322 TGCTCCCATATGAATATGTTTTGACT 58.938 34.615 3.65 0.00 38.73 3.41
3140 3422 6.819284 TGATTTGATTTGAGCTGGTTTTCTT 58.181 32.000 0.00 0.00 0.00 2.52
3141 3423 6.409524 TGATTTGATTTGAGCTGGTTTTCT 57.590 33.333 0.00 0.00 0.00 2.52
3146 3428 3.094572 CCCTGATTTGATTTGAGCTGGT 58.905 45.455 0.00 0.00 0.00 4.00
3201 3483 9.717942 GTTGATACTAGATAGCAGATGGAAAAT 57.282 33.333 0.00 0.00 28.97 1.82
3247 3529 3.661944 ATTCTCCAGAATAGCATCAGCG 58.338 45.455 0.00 0.00 42.48 5.18
3477 3759 7.328737 TCTGTATTAAGCTTAACTCTTCCCAC 58.671 38.462 20.85 9.23 0.00 4.61
3553 3835 3.755378 GCTAAAGATGATTGATCCCGCAT 59.245 43.478 0.00 0.00 0.00 4.73
3620 3902 8.650143 AAATTCCCTCTTTTATTGCAAGTAGA 57.350 30.769 4.94 4.06 0.00 2.59
3649 3931 7.836685 TGGGTAAATTGCTCCATTGTAAAGATA 59.163 33.333 0.00 0.00 0.00 1.98
3687 3969 0.678048 GACGGCCTCCAAGCAATCTT 60.678 55.000 0.00 0.00 0.00 2.40
3712 3995 9.785982 GATCTATTTGCTACTCCTTCCTTAATT 57.214 33.333 0.00 0.00 0.00 1.40
3813 4096 5.916661 ATGACTAGTACCGTCACAATTCT 57.083 39.130 15.39 0.00 43.44 2.40
3928 5821 9.996554 TCTTGTATCACTCAATTTTCAGTCTTA 57.003 29.630 0.00 0.00 0.00 2.10
3929 5822 8.908786 TCTTGTATCACTCAATTTTCAGTCTT 57.091 30.769 0.00 0.00 0.00 3.01
3930 5823 8.908786 TTCTTGTATCACTCAATTTTCAGTCT 57.091 30.769 0.00 0.00 0.00 3.24
3974 5867 8.057623 ACCACATTCATCATAGAGGAAAAGATT 58.942 33.333 0.00 0.00 36.00 2.40
3975 5868 7.580910 ACCACATTCATCATAGAGGAAAAGAT 58.419 34.615 0.00 0.00 36.00 2.40
3976 5869 6.962182 ACCACATTCATCATAGAGGAAAAGA 58.038 36.000 0.00 0.00 36.00 2.52
3977 5870 7.555554 AGAACCACATTCATCATAGAGGAAAAG 59.444 37.037 0.00 0.00 40.09 2.27
3978 5871 7.337689 CAGAACCACATTCATCATAGAGGAAAA 59.662 37.037 0.00 0.00 40.09 2.29
3979 5872 6.825213 CAGAACCACATTCATCATAGAGGAAA 59.175 38.462 0.00 0.00 40.09 3.13
3980 5873 6.351711 CAGAACCACATTCATCATAGAGGAA 58.648 40.000 0.00 0.00 40.09 3.36
3981 5874 5.685861 GCAGAACCACATTCATCATAGAGGA 60.686 44.000 0.00 0.00 40.09 3.71
3982 5875 4.514441 GCAGAACCACATTCATCATAGAGG 59.486 45.833 0.00 0.00 40.09 3.69
3983 5876 5.366460 AGCAGAACCACATTCATCATAGAG 58.634 41.667 0.00 0.00 40.09 2.43
3984 5877 5.363562 AGCAGAACCACATTCATCATAGA 57.636 39.130 0.00 0.00 40.09 1.98
3985 5878 6.446781 AAAGCAGAACCACATTCATCATAG 57.553 37.500 0.00 0.00 40.09 2.23
3986 5879 6.839124 AAAAGCAGAACCACATTCATCATA 57.161 33.333 0.00 0.00 40.09 2.15
3987 5880 5.733620 AAAAGCAGAACCACATTCATCAT 57.266 34.783 0.00 0.00 40.09 2.45
3988 5881 5.534207 AAAAAGCAGAACCACATTCATCA 57.466 34.783 0.00 0.00 40.09 3.07
4030 5923 9.021807 GGTGATAGTACCAGCTATTCTAACATA 57.978 37.037 0.00 0.00 40.54 2.29
4031 5924 7.038941 GGGTGATAGTACCAGCTATTCTAACAT 60.039 40.741 0.00 0.00 42.69 2.71
4032 5925 6.267014 GGGTGATAGTACCAGCTATTCTAACA 59.733 42.308 0.00 0.00 42.69 2.41
4033 5926 6.267014 TGGGTGATAGTACCAGCTATTCTAAC 59.733 42.308 0.00 0.00 42.69 2.34
4034 5927 6.378745 TGGGTGATAGTACCAGCTATTCTAA 58.621 40.000 0.00 0.00 42.69 2.10
4035 5928 5.960704 TGGGTGATAGTACCAGCTATTCTA 58.039 41.667 0.00 0.00 42.69 2.10
4036 5929 4.816126 TGGGTGATAGTACCAGCTATTCT 58.184 43.478 0.00 0.00 42.69 2.40
4037 5930 5.546621 TTGGGTGATAGTACCAGCTATTC 57.453 43.478 0.00 0.00 42.69 1.75
4038 5931 5.606749 TCATTGGGTGATAGTACCAGCTATT 59.393 40.000 0.00 0.00 42.69 1.73
4039 5932 5.155161 TCATTGGGTGATAGTACCAGCTAT 58.845 41.667 0.00 0.00 42.69 2.97
4040 5933 4.552674 TCATTGGGTGATAGTACCAGCTA 58.447 43.478 0.00 0.00 42.69 3.32
4041 5934 3.384168 TCATTGGGTGATAGTACCAGCT 58.616 45.455 0.00 0.00 42.69 4.24
4042 5935 3.838244 TCATTGGGTGATAGTACCAGC 57.162 47.619 0.00 0.00 42.69 4.85
4043 5936 5.070981 AGACATCATTGGGTGATAGTACCAG 59.929 44.000 0.00 0.00 45.76 4.00
4044 5937 4.968719 AGACATCATTGGGTGATAGTACCA 59.031 41.667 0.00 0.00 45.76 3.25
4045 5938 5.552870 AGACATCATTGGGTGATAGTACC 57.447 43.478 0.00 0.00 45.76 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.