Multiple sequence alignment - TraesCS7D01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G100000 chr7D 100.000 4298 0 0 1 4298 60024213 60019916 0.000000e+00 7938.0
1 TraesCS7D01G100000 chr7D 100.000 357 0 0 4682 5038 60019532 60019176 0.000000e+00 660.0
2 TraesCS7D01G100000 chr7D 96.657 359 10 1 4682 5038 618685950 618686308 3.360000e-166 595.0
3 TraesCS7D01G100000 chr7D 96.100 359 12 1 4682 5038 594722847 594722489 7.270000e-163 584.0
4 TraesCS7D01G100000 chr7D 94.737 228 11 1 4071 4298 413997169 413996943 2.230000e-93 353.0
5 TraesCS7D01G100000 chr7D 87.500 72 7 2 1552 1622 112131684 112131614 1.160000e-11 82.4
6 TraesCS7D01G100000 chr7D 84.615 65 5 3 2253 2314 136404229 136404167 5.450000e-05 60.2
7 TraesCS7D01G100000 chr7B 90.593 2764 180 42 1340 4079 2074244 2076951 0.000000e+00 3591.0
8 TraesCS7D01G100000 chr7B 91.495 1846 110 25 2274 4079 2099959 2101797 0.000000e+00 2495.0
9 TraesCS7D01G100000 chr7B 95.556 720 31 1 1521 2239 2099241 2099960 0.000000e+00 1151.0
10 TraesCS7D01G100000 chr7B 89.106 716 40 24 654 1344 2066802 2067504 0.000000e+00 856.0
11 TraesCS7D01G100000 chr7B 83.725 553 45 21 957 1474 2098561 2099103 9.810000e-132 481.0
12 TraesCS7D01G100000 chr7B 84.309 376 45 6 164 533 2097919 2098286 6.200000e-94 355.0
13 TraesCS7D01G100000 chr7B 93.277 238 13 3 4063 4298 583156347 583156583 1.040000e-91 348.0
14 TraesCS7D01G100000 chr7B 92.347 196 10 5 637 828 2098277 2098471 1.790000e-69 274.0
15 TraesCS7D01G100000 chrUn 95.034 1490 57 11 1521 2998 83953400 83951916 0.000000e+00 2326.0
16 TraesCS7D01G100000 chrUn 92.903 1085 74 2 2997 4079 83951755 83950672 0.000000e+00 1574.0
17 TraesCS7D01G100000 chrUn 83.643 538 42 23 973 1474 83954063 83953536 9.880000e-127 464.0
18 TraesCS7D01G100000 chrUn 89.024 82 5 2 720 800 83955695 83955617 1.150000e-16 99.0
19 TraesCS7D01G100000 chrUn 80.488 123 20 4 2194 2314 29800277 29800157 1.930000e-14 91.6
20 TraesCS7D01G100000 chr7A 92.026 1530 99 13 2447 3965 63907356 63905839 0.000000e+00 2128.0
21 TraesCS7D01G100000 chr7A 90.815 577 30 3 1880 2455 63908066 63907512 0.000000e+00 750.0
22 TraesCS7D01G100000 chr7A 81.301 123 20 3 2196 2316 721993986 721994107 4.150000e-16 97.1
23 TraesCS7D01G100000 chr7A 84.722 72 9 2 1552 1622 117087744 117087674 2.520000e-08 71.3
24 TraesCS7D01G100000 chr4D 96.936 359 9 1 4682 5038 150905799 150906157 7.220000e-168 601.0
25 TraesCS7D01G100000 chr4D 96.818 220 6 1 4079 4298 150905488 150905706 2.870000e-97 366.0
26 TraesCS7D01G100000 chr1D 96.369 358 11 1 4683 5038 268153824 268154181 5.620000e-164 588.0
27 TraesCS7D01G100000 chr5D 96.100 359 12 1 4682 5038 330718190 330718548 7.270000e-163 584.0
28 TraesCS7D01G100000 chr5D 96.100 359 11 2 4682 5038 375320853 375321210 2.610000e-162 582.0
29 TraesCS7D01G100000 chr5D 96.100 359 11 2 4682 5038 401315025 401314668 2.610000e-162 582.0
30 TraesCS7D01G100000 chr2D 96.100 359 12 1 4682 5038 333498185 333497827 7.270000e-163 584.0
31 TraesCS7D01G100000 chr2D 95.982 224 8 1 4075 4298 333498484 333498262 3.710000e-96 363.0
32 TraesCS7D01G100000 chr2D 85.088 114 16 1 1725 1837 9622233 9622346 1.150000e-21 115.0
33 TraesCS7D01G100000 chr2D 82.418 91 10 5 2232 2319 566657877 566657790 1.950000e-09 75.0
34 TraesCS7D01G100000 chr6D 96.100 359 11 2 4682 5038 21010421 21010778 2.610000e-162 582.0
35 TraesCS7D01G100000 chr6D 94.737 228 11 1 4071 4298 182685198 182684972 2.230000e-93 353.0
36 TraesCS7D01G100000 chr3B 95.964 223 8 1 4076 4298 431148120 431147899 1.330000e-95 361.0
37 TraesCS7D01G100000 chr3D 95.175 228 10 1 4071 4298 29694805 29694579 4.800000e-95 359.0
38 TraesCS7D01G100000 chr3D 94.760 229 9 3 4071 4298 275450286 275450060 2.230000e-93 353.0
39 TraesCS7D01G100000 chr3A 95.946 222 8 1 4077 4298 546609965 546609745 4.800000e-95 359.0
40 TraesCS7D01G100000 chr5A 98.387 62 1 0 574 635 35116481 35116542 5.330000e-20 110.0
41 TraesCS7D01G100000 chr5A 88.889 63 7 0 1761 1823 701964738 701964676 1.500000e-10 78.7
42 TraesCS7D01G100000 chr4A 84.211 114 17 1 2196 2309 684958105 684957993 5.330000e-20 110.0
43 TraesCS7D01G100000 chr6A 95.522 67 3 0 574 640 487776877 487776811 1.920000e-19 108.0
44 TraesCS7D01G100000 chr4B 83.000 100 17 0 1725 1824 661170206 661170107 1.930000e-14 91.6
45 TraesCS7D01G100000 chr4B 84.524 84 13 0 1740 1823 661187140 661187057 3.230000e-12 84.2
46 TraesCS7D01G100000 chr4B 84.524 84 13 0 1740 1823 662079940 662080023 3.230000e-12 84.2
47 TraesCS7D01G100000 chr1B 80.508 118 17 4 2254 2366 31703707 31703823 8.990000e-13 86.1
48 TraesCS7D01G100000 chr1A 86.420 81 6 5 2205 2282 3758559 3758637 3.230000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G100000 chr7D 60019176 60024213 5037 True 4299.00 7938 100.0000 1 5038 2 chr7D.!!$R5 5037
1 TraesCS7D01G100000 chr7B 2074244 2076951 2707 False 3591.00 3591 90.5930 1340 4079 1 chr7B.!!$F2 2739
2 TraesCS7D01G100000 chr7B 2097919 2101797 3878 False 951.20 2495 89.4864 164 4079 5 chr7B.!!$F4 3915
3 TraesCS7D01G100000 chr7B 2066802 2067504 702 False 856.00 856 89.1060 654 1344 1 chr7B.!!$F1 690
4 TraesCS7D01G100000 chrUn 83950672 83955695 5023 True 1115.75 2326 90.1510 720 4079 4 chrUn.!!$R2 3359
5 TraesCS7D01G100000 chr7A 63905839 63908066 2227 True 1439.00 2128 91.4205 1880 3965 2 chr7A.!!$R2 2085
6 TraesCS7D01G100000 chr4D 150905488 150906157 669 False 483.50 601 96.8770 4079 5038 2 chr4D.!!$F1 959
7 TraesCS7D01G100000 chr2D 333497827 333498484 657 True 473.50 584 96.0410 4075 5038 2 chr2D.!!$R2 963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 881 0.109086 CTCGTCGACAGTGGAATGCT 60.109 55.000 17.16 0.0 0.00 3.79 F
868 882 0.317160 TCGTCGACAGTGGAATGCTT 59.683 50.000 17.16 0.0 0.00 3.91 F
871 885 0.601057 TCGACAGTGGAATGCTTCGA 59.399 50.000 0.00 0.0 0.00 3.71 F
1216 2667 0.819259 GGTACGCACCATGCATCCAT 60.819 55.000 0.00 0.0 45.36 3.41 F
1382 2848 0.835941 AGGAGGCTAGCAAGTCCATG 59.164 55.000 24.31 0.0 0.00 3.66 F
2860 4613 1.005924 TGATCAGGGGAGGCCTTTTTC 59.994 52.381 6.77 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2631 4375 0.034380 GTCCTACTGGAAAAGGCCCC 60.034 60.000 0.00 0.0 45.18 5.80 R
2745 4492 4.646040 TCATGAAATGGTTAGATGCCTTGG 59.354 41.667 0.00 0.0 46.73 3.61 R
2801 4551 8.978874 ATACAATACAAAGTTGCTCATATGGA 57.021 30.769 2.13 0.0 0.00 3.41 R
3122 5066 1.864435 GCGGTAGCATTGTACTCCTCG 60.864 57.143 0.00 0.0 44.35 4.63 R
3186 5130 2.032549 CGTCAAGTTTGAGTGCCTTCAG 60.033 50.000 0.00 0.0 37.98 3.02 R
4049 6002 0.179045 GGAAGCCAGCCGTATCATGT 60.179 55.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.867109 AGGGACTTCACAGGTCAATG 57.133 50.000 0.00 0.00 27.25 2.82
30 31 2.338809 AGGGACTTCACAGGTCAATGA 58.661 47.619 0.00 0.00 27.25 2.57
31 32 2.711009 AGGGACTTCACAGGTCAATGAA 59.289 45.455 0.00 0.00 27.25 2.57
37 38 3.969287 TCACAGGTCAATGAAGAGGAG 57.031 47.619 0.00 0.00 0.00 3.69
38 39 2.568956 TCACAGGTCAATGAAGAGGAGG 59.431 50.000 0.00 0.00 0.00 4.30
39 40 2.568956 CACAGGTCAATGAAGAGGAGGA 59.431 50.000 0.00 0.00 0.00 3.71
40 41 3.199508 CACAGGTCAATGAAGAGGAGGAT 59.800 47.826 0.00 0.00 0.00 3.24
41 42 3.199508 ACAGGTCAATGAAGAGGAGGATG 59.800 47.826 0.00 0.00 0.00 3.51
42 43 2.172293 AGGTCAATGAAGAGGAGGATGC 59.828 50.000 0.00 0.00 0.00 3.91
43 44 2.092753 GGTCAATGAAGAGGAGGATGCA 60.093 50.000 0.00 0.00 0.00 3.96
44 45 2.941720 GTCAATGAAGAGGAGGATGCAC 59.058 50.000 0.00 0.00 0.00 4.57
45 46 1.938577 CAATGAAGAGGAGGATGCACG 59.061 52.381 0.00 0.00 0.00 5.34
46 47 0.179062 ATGAAGAGGAGGATGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
47 48 1.522580 GAAGAGGAGGATGCACGCC 60.523 63.158 0.00 0.00 0.00 5.68
48 49 2.932130 GAAGAGGAGGATGCACGCCC 62.932 65.000 3.90 0.00 0.00 6.13
49 50 4.554036 GAGGAGGATGCACGCCCC 62.554 72.222 3.90 5.57 0.00 5.80
52 53 4.864334 GAGGATGCACGCCCCCTG 62.864 72.222 3.90 0.00 0.00 4.45
63 64 3.182263 CCCCCTGGGTGTGGTCAA 61.182 66.667 12.71 0.00 38.25 3.18
64 65 2.115266 CCCCTGGGTGTGGTCAAC 59.885 66.667 12.71 0.00 0.00 3.18
73 74 1.886542 GGTGTGGTCAACCTTGATTCC 59.113 52.381 0.10 0.00 39.73 3.01
74 75 1.535462 GTGTGGTCAACCTTGATTCCG 59.465 52.381 0.10 0.00 39.73 4.30
75 76 1.418264 TGTGGTCAACCTTGATTCCGA 59.582 47.619 0.10 0.00 39.73 4.55
76 77 1.804748 GTGGTCAACCTTGATTCCGAC 59.195 52.381 0.10 0.00 39.73 4.79
77 78 1.418264 TGGTCAACCTTGATTCCGACA 59.582 47.619 0.10 0.00 39.73 4.35
78 79 2.158740 TGGTCAACCTTGATTCCGACAA 60.159 45.455 0.10 0.00 39.73 3.18
79 80 2.225727 GGTCAACCTTGATTCCGACAAC 59.774 50.000 0.00 0.00 39.73 3.32
80 81 2.096417 GTCAACCTTGATTCCGACAACG 60.096 50.000 0.00 0.00 39.73 4.10
81 82 3.125956 TCAACCTTGATTCCGACAACGG 61.126 50.000 0.00 0.00 45.51 4.44
90 91 2.333938 CGACAACGGGAGTGACGT 59.666 61.111 0.00 0.00 46.69 4.34
91 92 1.728426 CGACAACGGGAGTGACGTC 60.728 63.158 9.11 9.11 46.69 4.34
92 93 1.658673 GACAACGGGAGTGACGTCT 59.341 57.895 17.92 0.00 46.69 4.18
93 94 0.386985 GACAACGGGAGTGACGTCTC 60.387 60.000 17.92 13.63 46.69 3.36
109 110 1.993370 GTCTCCGACGAAATTGACTGG 59.007 52.381 0.00 0.00 0.00 4.00
110 111 1.067142 TCTCCGACGAAATTGACTGGG 60.067 52.381 0.00 0.00 0.00 4.45
111 112 0.970640 TCCGACGAAATTGACTGGGA 59.029 50.000 0.00 0.00 0.00 4.37
112 113 1.076332 CCGACGAAATTGACTGGGAC 58.924 55.000 0.00 0.00 0.00 4.46
113 114 1.606994 CCGACGAAATTGACTGGGACA 60.607 52.381 0.00 0.00 0.00 4.02
149 150 9.490379 TTTTTAGTTCAAGTTTGCCTGTTTAAA 57.510 25.926 0.00 0.00 0.00 1.52
150 151 8.468720 TTTAGTTCAAGTTTGCCTGTTTAAAC 57.531 30.769 11.54 11.54 37.12 2.01
151 152 6.280855 AGTTCAAGTTTGCCTGTTTAAACT 57.719 33.333 18.72 0.00 46.03 2.66
156 157 5.570234 AGTTTGCCTGTTTAAACTTCGAA 57.430 34.783 18.72 10.55 42.67 3.71
157 158 6.144078 AGTTTGCCTGTTTAAACTTCGAAT 57.856 33.333 18.72 0.00 42.67 3.34
158 159 5.977129 AGTTTGCCTGTTTAAACTTCGAATG 59.023 36.000 18.72 0.00 42.67 2.67
159 160 5.508200 TTGCCTGTTTAAACTTCGAATGT 57.492 34.783 18.72 0.00 0.00 2.71
160 161 5.508200 TGCCTGTTTAAACTTCGAATGTT 57.492 34.783 18.72 2.71 0.00 2.71
161 162 5.897050 TGCCTGTTTAAACTTCGAATGTTT 58.103 33.333 18.72 21.19 40.27 2.83
162 163 7.028926 TGCCTGTTTAAACTTCGAATGTTTA 57.971 32.000 18.72 19.79 38.41 2.01
163 164 7.136119 TGCCTGTTTAAACTTCGAATGTTTAG 58.864 34.615 18.72 15.87 39.85 1.85
164 165 7.012515 TGCCTGTTTAAACTTCGAATGTTTAGA 59.987 33.333 18.72 17.71 39.85 2.10
165 166 7.858879 GCCTGTTTAAACTTCGAATGTTTAGAA 59.141 33.333 18.72 17.55 39.85 2.10
166 167 9.166126 CCTGTTTAAACTTCGAATGTTTAGAAC 57.834 33.333 18.72 24.13 39.85 3.01
167 168 9.931210 CTGTTTAAACTTCGAATGTTTAGAACT 57.069 29.630 26.47 14.33 39.85 3.01
173 174 9.665264 AAACTTCGAATGTTTAGAACTTTGATC 57.335 29.630 18.11 0.00 36.07 2.92
174 175 7.510630 ACTTCGAATGTTTAGAACTTTGATCG 58.489 34.615 0.00 0.00 0.00 3.69
175 176 7.384115 ACTTCGAATGTTTAGAACTTTGATCGA 59.616 33.333 0.00 0.00 0.00 3.59
176 177 7.646446 TCGAATGTTTAGAACTTTGATCGAA 57.354 32.000 0.00 0.00 0.00 3.71
177 178 7.729836 TCGAATGTTTAGAACTTTGATCGAAG 58.270 34.615 19.46 19.46 0.00 3.79
178 179 7.384115 TCGAATGTTTAGAACTTTGATCGAAGT 59.616 33.333 20.76 20.76 41.44 3.01
179 180 8.644619 CGAATGTTTAGAACTTTGATCGAAGTA 58.355 33.333 25.43 10.23 38.86 2.24
180 181 9.959775 GAATGTTTAGAACTTTGATCGAAGTAG 57.040 33.333 25.43 3.81 38.86 2.57
181 182 7.884816 TGTTTAGAACTTTGATCGAAGTAGG 57.115 36.000 25.43 3.68 38.86 3.18
182 183 7.663827 TGTTTAGAACTTTGATCGAAGTAGGA 58.336 34.615 25.43 12.54 38.86 2.94
183 184 8.145767 TGTTTAGAACTTTGATCGAAGTAGGAA 58.854 33.333 25.43 16.80 38.86 3.36
184 185 9.152595 GTTTAGAACTTTGATCGAAGTAGGAAT 57.847 33.333 25.43 11.94 38.86 3.01
189 190 9.314321 GAACTTTGATCGAAGTAGGAATATGAA 57.686 33.333 25.43 0.00 38.86 2.57
255 256 3.589735 TGTTCTGGGTGCCCTATTTTAGA 59.410 43.478 8.91 0.00 36.94 2.10
266 267 5.772672 TGCCCTATTTTAGAGCAACTTTTGA 59.227 36.000 0.00 0.00 36.55 2.69
281 282 2.842208 TTTGAAGACGCCACTTTGTG 57.158 45.000 0.00 0.00 0.00 3.33
319 320 8.841300 AGAAACACTTTTCAATCTCCTAAGTTC 58.159 33.333 0.31 0.00 43.29 3.01
329 330 7.556844 TCAATCTCCTAAGTTCTATTCCACAC 58.443 38.462 0.00 0.00 0.00 3.82
344 345 1.379309 ACACACGTTTTGGTGCCCT 60.379 52.632 3.84 0.00 41.65 5.19
351 352 4.231439 CACGTTTTGGTGCCCTAAAATAC 58.769 43.478 0.00 0.00 31.01 1.89
354 355 4.242475 GTTTTGGTGCCCTAAAATACTGC 58.758 43.478 0.00 0.00 31.01 4.40
363 364 4.022849 GCCCTAAAATACTGCAGCTATTGG 60.023 45.833 15.27 13.80 0.00 3.16
380 381 1.939974 TGGAGATGCTACAACGATGC 58.060 50.000 0.00 0.00 0.00 3.91
381 382 0.855349 GGAGATGCTACAACGATGCG 59.145 55.000 0.00 0.00 0.00 4.73
384 386 1.069204 AGATGCTACAACGATGCGGAT 59.931 47.619 0.00 0.00 0.00 4.18
406 408 3.762779 GCAATCTGCAACACTGGAATAC 58.237 45.455 0.00 0.00 44.26 1.89
413 415 2.678336 GCAACACTGGAATACCTGCTAC 59.322 50.000 0.00 0.00 38.45 3.58
418 424 3.701542 CACTGGAATACCTGCTACAGAGA 59.298 47.826 0.00 0.00 38.45 3.10
422 428 3.881688 GGAATACCTGCTACAGAGACGTA 59.118 47.826 0.00 0.00 32.44 3.57
443 449 1.352114 CCAATTTCATTGCGTGGCAG 58.648 50.000 0.00 0.00 40.61 4.85
444 450 1.337074 CCAATTTCATTGCGTGGCAGT 60.337 47.619 0.00 0.00 40.61 4.40
445 451 1.722464 CAATTTCATTGCGTGGCAGTG 59.278 47.619 6.75 6.75 45.46 3.66
446 452 0.244450 ATTTCATTGCGTGGCAGTGG 59.756 50.000 12.22 0.00 44.48 4.00
447 453 2.419057 TTTCATTGCGTGGCAGTGGC 62.419 55.000 10.30 10.30 44.48 5.01
448 454 3.672447 CATTGCGTGGCAGTGGCA 61.672 61.111 16.56 16.56 41.48 4.92
457 463 2.639286 GCAGTGGCACCGTGAAAG 59.361 61.111 15.27 0.00 40.72 2.62
468 474 2.227194 ACCGTGAAAGGTGTTGGAATC 58.773 47.619 0.00 0.00 44.07 2.52
489 495 2.741486 TTCTGCCAAGGGGTGCGTAC 62.741 60.000 0.00 0.00 36.17 3.67
533 539 1.066908 GCAGAGAGCAGTACTAGCAGG 59.933 57.143 16.27 0.00 44.79 4.85
535 541 1.566703 AGAGAGCAGTACTAGCAGGGA 59.433 52.381 16.27 0.00 0.00 4.20
536 542 1.679153 GAGAGCAGTACTAGCAGGGAC 59.321 57.143 16.27 0.00 0.00 4.46
537 543 0.747852 GAGCAGTACTAGCAGGGACC 59.252 60.000 16.27 0.00 0.00 4.46
538 544 0.688087 AGCAGTACTAGCAGGGACCC 60.688 60.000 0.59 0.59 0.00 4.46
539 545 0.976073 GCAGTACTAGCAGGGACCCA 60.976 60.000 14.60 0.00 0.00 4.51
540 546 0.824759 CAGTACTAGCAGGGACCCAC 59.175 60.000 14.60 4.11 0.00 4.61
541 547 0.325390 AGTACTAGCAGGGACCCACC 60.325 60.000 14.60 2.43 38.08 4.61
551 557 3.466714 GGACCCACCCCATTGAAAA 57.533 52.632 0.00 0.00 0.00 2.29
552 558 1.951209 GGACCCACCCCATTGAAAAT 58.049 50.000 0.00 0.00 0.00 1.82
553 559 1.831106 GGACCCACCCCATTGAAAATC 59.169 52.381 0.00 0.00 0.00 2.17
554 560 2.534990 GACCCACCCCATTGAAAATCA 58.465 47.619 0.00 0.00 0.00 2.57
555 561 2.497273 GACCCACCCCATTGAAAATCAG 59.503 50.000 0.00 0.00 0.00 2.90
556 562 1.832998 CCCACCCCATTGAAAATCAGG 59.167 52.381 0.00 0.00 0.00 3.86
557 563 1.832998 CCACCCCATTGAAAATCAGGG 59.167 52.381 0.00 0.00 35.96 4.45
591 597 9.813826 AATTATCCTAGAATTATTGTGGGAAGG 57.186 33.333 10.88 0.00 37.14 3.46
592 598 6.848562 ATCCTAGAATTATTGTGGGAAGGT 57.151 37.500 10.88 0.00 37.14 3.50
593 599 6.652205 TCCTAGAATTATTGTGGGAAGGTT 57.348 37.500 4.77 0.00 30.52 3.50
594 600 7.758820 TCCTAGAATTATTGTGGGAAGGTTA 57.241 36.000 4.77 0.00 30.52 2.85
595 601 7.571025 TCCTAGAATTATTGTGGGAAGGTTAC 58.429 38.462 4.77 0.00 30.52 2.50
596 602 6.482308 CCTAGAATTATTGTGGGAAGGTTACG 59.518 42.308 0.00 0.00 0.00 3.18
597 603 5.812286 AGAATTATTGTGGGAAGGTTACGT 58.188 37.500 0.00 0.00 0.00 3.57
598 604 6.949715 AGAATTATTGTGGGAAGGTTACGTA 58.050 36.000 0.00 0.00 0.00 3.57
599 605 7.396418 AGAATTATTGTGGGAAGGTTACGTAA 58.604 34.615 3.29 3.29 0.00 3.18
601 607 4.895668 ATTGTGGGAAGGTTACGTAAGA 57.104 40.909 8.60 0.00 43.62 2.10
602 608 4.686191 TTGTGGGAAGGTTACGTAAGAA 57.314 40.909 8.60 0.00 43.62 2.52
603 609 4.895668 TGTGGGAAGGTTACGTAAGAAT 57.104 40.909 8.60 0.00 43.62 2.40
604 610 5.231702 TGTGGGAAGGTTACGTAAGAATT 57.768 39.130 8.60 3.83 43.62 2.17
605 611 5.623169 TGTGGGAAGGTTACGTAAGAATTT 58.377 37.500 8.60 0.98 43.62 1.82
606 612 6.767456 TGTGGGAAGGTTACGTAAGAATTTA 58.233 36.000 8.60 0.00 43.62 1.40
607 613 6.650390 TGTGGGAAGGTTACGTAAGAATTTAC 59.350 38.462 8.60 4.20 43.62 2.01
619 625 6.638168 GTAAGAATTTACGTTAGCCTTCGT 57.362 37.500 0.00 3.47 42.82 3.85
620 626 7.740519 GTAAGAATTTACGTTAGCCTTCGTA 57.259 36.000 0.00 0.00 40.70 3.43
621 627 6.882458 AAGAATTTACGTTAGCCTTCGTAG 57.118 37.500 0.00 0.00 42.09 3.51
622 628 5.346522 AGAATTTACGTTAGCCTTCGTAGG 58.653 41.667 3.26 3.26 42.09 3.18
623 629 4.725790 ATTTACGTTAGCCTTCGTAGGT 57.274 40.909 10.05 0.00 44.00 3.08
624 630 3.764885 TTACGTTAGCCTTCGTAGGTC 57.235 47.619 10.05 2.43 44.00 3.85
625 631 1.831580 ACGTTAGCCTTCGTAGGTCT 58.168 50.000 10.05 9.61 44.00 3.85
626 632 2.991250 ACGTTAGCCTTCGTAGGTCTA 58.009 47.619 10.05 8.69 44.00 2.59
627 633 3.549794 ACGTTAGCCTTCGTAGGTCTAT 58.450 45.455 10.05 0.00 44.00 1.98
628 634 3.563390 ACGTTAGCCTTCGTAGGTCTATC 59.437 47.826 10.05 9.33 44.00 2.08
629 635 3.562973 CGTTAGCCTTCGTAGGTCTATCA 59.437 47.826 10.05 0.00 44.00 2.15
630 636 4.215827 CGTTAGCCTTCGTAGGTCTATCAT 59.784 45.833 10.05 0.00 44.00 2.45
631 637 5.278364 CGTTAGCCTTCGTAGGTCTATCATT 60.278 44.000 10.05 0.00 44.00 2.57
632 638 6.072838 CGTTAGCCTTCGTAGGTCTATCATTA 60.073 42.308 10.05 0.00 44.00 1.90
633 639 7.361885 CGTTAGCCTTCGTAGGTCTATCATTAT 60.362 40.741 10.05 0.00 44.00 1.28
634 640 6.518208 AGCCTTCGTAGGTCTATCATTATC 57.482 41.667 10.05 0.00 44.00 1.75
635 641 5.124138 AGCCTTCGTAGGTCTATCATTATCG 59.876 44.000 10.05 0.00 44.00 2.92
636 642 5.676584 GCCTTCGTAGGTCTATCATTATCGG 60.677 48.000 10.05 0.00 44.00 4.18
637 643 5.415077 CCTTCGTAGGTCTATCATTATCGGT 59.585 44.000 0.00 0.00 36.74 4.69
638 644 6.596888 CCTTCGTAGGTCTATCATTATCGGTA 59.403 42.308 0.00 0.00 36.74 4.02
639 645 6.974932 TCGTAGGTCTATCATTATCGGTAC 57.025 41.667 0.00 0.00 0.00 3.34
640 646 6.705302 TCGTAGGTCTATCATTATCGGTACT 58.295 40.000 0.00 0.00 0.00 2.73
641 647 7.840931 TCGTAGGTCTATCATTATCGGTACTA 58.159 38.462 0.00 0.00 0.00 1.82
642 648 7.978414 TCGTAGGTCTATCATTATCGGTACTAG 59.022 40.741 0.00 0.00 0.00 2.57
643 649 7.254387 CGTAGGTCTATCATTATCGGTACTAGC 60.254 44.444 0.00 0.00 0.00 3.42
644 650 6.482524 AGGTCTATCATTATCGGTACTAGCA 58.517 40.000 0.00 0.00 0.00 3.49
645 651 6.600032 AGGTCTATCATTATCGGTACTAGCAG 59.400 42.308 0.00 0.00 0.00 4.24
646 652 6.598457 GGTCTATCATTATCGGTACTAGCAGA 59.402 42.308 0.00 0.00 0.00 4.26
647 653 7.201661 GGTCTATCATTATCGGTACTAGCAGAG 60.202 44.444 0.00 0.00 0.00 3.35
648 654 5.906113 ATCATTATCGGTACTAGCAGAGG 57.094 43.478 0.00 0.00 0.00 3.69
649 655 4.079970 TCATTATCGGTACTAGCAGAGGG 58.920 47.826 0.00 0.00 0.00 4.30
650 656 2.581216 TATCGGTACTAGCAGAGGGG 57.419 55.000 0.00 0.00 0.00 4.79
651 657 0.851469 ATCGGTACTAGCAGAGGGGA 59.149 55.000 0.00 0.00 0.00 4.81
652 658 0.851469 TCGGTACTAGCAGAGGGGAT 59.149 55.000 0.00 0.00 0.00 3.85
706 713 2.625790 TCAAAATCCCACCCGAAAGTTG 59.374 45.455 0.00 0.00 0.00 3.16
821 829 3.418068 GCGCTCACTGTCTGCACC 61.418 66.667 0.00 0.00 0.00 5.01
841 849 3.530910 AAGCCCGGACACTTCCACG 62.531 63.158 0.73 0.00 43.00 4.94
848 862 1.990563 CGGACACTTCCACGTGAATAC 59.009 52.381 19.30 1.52 43.00 1.89
867 881 0.109086 CTCGTCGACAGTGGAATGCT 60.109 55.000 17.16 0.00 0.00 3.79
868 882 0.317160 TCGTCGACAGTGGAATGCTT 59.683 50.000 17.16 0.00 0.00 3.91
869 883 0.716108 CGTCGACAGTGGAATGCTTC 59.284 55.000 17.16 0.00 0.00 3.86
870 884 0.716108 GTCGACAGTGGAATGCTTCG 59.284 55.000 11.55 0.00 0.00 3.79
871 885 0.601057 TCGACAGTGGAATGCTTCGA 59.399 50.000 0.00 0.00 0.00 3.71
872 886 1.000394 TCGACAGTGGAATGCTTCGAA 60.000 47.619 0.00 0.00 0.00 3.71
873 887 1.798223 CGACAGTGGAATGCTTCGAAA 59.202 47.619 0.00 0.00 0.00 3.46
934 2333 9.349713 GCTGTTGCTCCTATACTCTATCTATAT 57.650 37.037 0.00 0.00 36.03 0.86
1161 2610 1.687563 TCGACAAGCGGATGGATCTA 58.312 50.000 0.00 0.00 41.33 1.98
1204 2655 1.373748 GTCTTCGCCAAGGTACGCA 60.374 57.895 0.00 0.00 0.00 5.24
1205 2656 1.373748 TCTTCGCCAAGGTACGCAC 60.374 57.895 0.00 0.00 0.00 5.34
1206 2657 2.357760 TTCGCCAAGGTACGCACC 60.358 61.111 0.00 0.00 46.19 5.01
1214 2665 3.420943 GGTACGCACCATGCATCC 58.579 61.111 0.00 0.00 45.36 3.51
1216 2667 0.819259 GGTACGCACCATGCATCCAT 60.819 55.000 0.00 0.00 45.36 3.41
1234 2699 7.108194 GCATCCATGATATACTCCATCAGAAA 58.892 38.462 0.00 0.00 35.93 2.52
1237 2702 9.736414 ATCCATGATATACTCCATCAGAAAAAG 57.264 33.333 0.00 0.00 35.93 2.27
1247 2712 3.056393 CCATCAGAAAAAGAAGCCATGCA 60.056 43.478 0.00 0.00 0.00 3.96
1248 2713 4.382685 CCATCAGAAAAAGAAGCCATGCAT 60.383 41.667 0.00 0.00 0.00 3.96
1249 2714 4.182693 TCAGAAAAAGAAGCCATGCATG 57.817 40.909 20.19 20.19 0.00 4.06
1250 2715 2.671396 CAGAAAAAGAAGCCATGCATGC 59.329 45.455 21.69 11.82 0.00 4.06
1251 2716 2.300723 AGAAAAAGAAGCCATGCATGCA 59.699 40.909 25.04 25.04 0.00 3.96
1265 2730 2.300433 GCATGCATGGTAAGGATGACA 58.700 47.619 27.34 0.00 37.02 3.58
1283 2748 4.676546 TGACACAGTCGATCTTCATCATC 58.323 43.478 0.00 0.00 34.95 2.92
1286 2751 3.973767 CACAGTCGATCTTCATCATCTCG 59.026 47.826 0.00 0.00 0.00 4.04
1313 2779 4.038162 ACAGCTAGTCTTTTCGTGTCTCTT 59.962 41.667 0.00 0.00 0.00 2.85
1314 2780 4.619336 CAGCTAGTCTTTTCGTGTCTCTTC 59.381 45.833 0.00 0.00 0.00 2.87
1315 2781 4.521256 AGCTAGTCTTTTCGTGTCTCTTCT 59.479 41.667 0.00 0.00 0.00 2.85
1316 2782 5.010213 AGCTAGTCTTTTCGTGTCTCTTCTT 59.990 40.000 0.00 0.00 0.00 2.52
1317 2783 5.692654 GCTAGTCTTTTCGTGTCTCTTCTTT 59.307 40.000 0.00 0.00 0.00 2.52
1318 2784 5.975410 AGTCTTTTCGTGTCTCTTCTTTG 57.025 39.130 0.00 0.00 0.00 2.77
1319 2785 5.420409 AGTCTTTTCGTGTCTCTTCTTTGT 58.580 37.500 0.00 0.00 0.00 2.83
1382 2848 0.835941 AGGAGGCTAGCAAGTCCATG 59.164 55.000 24.31 0.00 0.00 3.66
1451 2917 5.488645 TGAAAACAACTCCCGTTAAACTC 57.511 39.130 0.00 0.00 0.00 3.01
1474 2944 7.012989 ACTCGGGGTATGCAAAATTTAATACTC 59.987 37.037 13.82 11.42 0.00 2.59
1475 2945 6.263617 TCGGGGTATGCAAAATTTAATACTCC 59.736 38.462 18.88 18.88 41.08 3.85
1476 2946 6.516028 CGGGGTATGCAAAATTTAATACTCCC 60.516 42.308 20.99 20.29 41.33 4.30
1478 2948 7.255836 GGGGTATGCAAAATTTAATACTCCCTC 60.256 40.741 18.44 7.85 39.35 4.30
1480 2950 9.569122 GGTATGCAAAATTTAATACTCCCTCTA 57.431 33.333 13.82 0.00 0.00 2.43
1501 2971 7.439356 CCTCTAATCTGAATTAATTGACGCAGA 59.561 37.037 15.68 15.68 36.88 4.26
1502 2972 8.131455 TCTAATCTGAATTAATTGACGCAGAC 57.869 34.615 15.66 0.00 35.49 3.51
1503 2973 6.992063 AATCTGAATTAATTGACGCAGACT 57.008 33.333 15.66 6.23 35.49 3.24
1504 2974 6.595772 ATCTGAATTAATTGACGCAGACTC 57.404 37.500 15.66 0.00 35.49 3.36
1505 2975 5.724328 TCTGAATTAATTGACGCAGACTCT 58.276 37.500 5.17 0.00 0.00 3.24
1506 2976 6.863275 TCTGAATTAATTGACGCAGACTCTA 58.137 36.000 5.17 0.00 0.00 2.43
1507 2977 6.975197 TCTGAATTAATTGACGCAGACTCTAG 59.025 38.462 5.17 0.00 0.00 2.43
1508 2978 6.863275 TGAATTAATTGACGCAGACTCTAGA 58.137 36.000 5.17 0.00 0.00 2.43
1509 2979 6.975197 TGAATTAATTGACGCAGACTCTAGAG 59.025 38.462 18.49 18.49 0.00 2.43
1510 2980 6.701145 ATTAATTGACGCAGACTCTAGAGA 57.299 37.500 26.57 0.31 0.00 3.10
1512 2982 5.590530 AATTGACGCAGACTCTAGAGAAT 57.409 39.130 26.57 10.93 0.00 2.40
1513 2983 4.362932 TTGACGCAGACTCTAGAGAATG 57.637 45.455 26.57 21.85 0.00 2.67
1514 2984 3.348119 TGACGCAGACTCTAGAGAATGT 58.652 45.455 26.57 15.37 0.00 2.71
1515 2985 3.375610 TGACGCAGACTCTAGAGAATGTC 59.624 47.826 26.57 21.78 0.00 3.06
1516 2986 2.685897 ACGCAGACTCTAGAGAATGTCC 59.314 50.000 26.57 10.52 0.00 4.02
1518 2988 3.243035 CGCAGACTCTAGAGAATGTCCTG 60.243 52.174 26.57 19.44 0.00 3.86
1519 2989 3.068024 GCAGACTCTAGAGAATGTCCTGG 59.932 52.174 26.57 7.81 0.00 4.45
1532 3093 8.180165 AGAGAATGTCCTGGGTCAAGATATATA 58.820 37.037 0.00 0.00 0.00 0.86
1540 3101 6.183360 CCTGGGTCAAGATATATAGATCAGGC 60.183 46.154 9.90 3.48 32.13 4.85
1561 3122 3.524541 CCTTGATTTAAATGTGCAGGCC 58.475 45.455 5.17 0.00 0.00 5.19
1832 3399 8.933522 ATCCTACCTATGGGTATAATTCACAT 57.066 34.615 8.62 0.00 45.87 3.21
1839 3406 5.560722 TGGGTATAATTCACATGACCGAT 57.439 39.130 0.00 0.00 0.00 4.18
1842 3409 5.995282 GGGTATAATTCACATGACCGATCAA 59.005 40.000 0.00 0.00 38.69 2.57
1877 3444 4.032703 GCATGTGGCACGAATTCTTATT 57.967 40.909 13.77 0.00 43.97 1.40
1891 3458 8.814235 ACGAATTCTTATTAGATACAAACACCG 58.186 33.333 3.52 0.00 0.00 4.94
1895 3462 8.470040 TTCTTATTAGATACAAACACCGACAC 57.530 34.615 0.00 0.00 0.00 3.67
1902 3469 3.691049 ACAAACACCGACACTTCATTG 57.309 42.857 0.00 0.00 0.00 2.82
2055 3622 2.273449 CCATTTCTCCAGCCGCCT 59.727 61.111 0.00 0.00 0.00 5.52
2061 3628 4.093291 CTCCAGCCGCCTCTGCTT 62.093 66.667 0.00 0.00 36.81 3.91
2081 3648 2.581354 GCTCCACGAGTGCCTCAT 59.419 61.111 0.00 0.00 31.39 2.90
2175 3742 3.053842 AGACCCTCTCATGCATGAATGTT 60.054 43.478 28.39 13.01 36.18 2.71
2591 4334 4.522405 TGTTGGTGTACATCCCAAATGAAG 59.478 41.667 17.06 0.00 42.12 3.02
2595 4338 3.129287 GTGTACATCCCAAATGAAGCCTG 59.871 47.826 0.00 0.00 0.00 4.85
2602 4345 1.197721 CCAAATGAAGCCTGTGTCGTC 59.802 52.381 0.00 0.00 0.00 4.20
2625 4368 7.254852 GTCCTGAATGAACTTTGTAACAAACA 58.745 34.615 0.00 0.00 35.88 2.83
2796 4543 8.593945 AGAGGGACATATTGCTTTTTGATTTA 57.406 30.769 0.00 0.00 0.00 1.40
2860 4613 1.005924 TGATCAGGGGAGGCCTTTTTC 59.994 52.381 6.77 0.00 0.00 2.29
2925 4678 4.335874 TCGTGTAGAGATCTTCAAGGCTAC 59.664 45.833 0.00 3.43 0.00 3.58
2926 4679 4.498345 CGTGTAGAGATCTTCAAGGCTACC 60.498 50.000 12.16 5.56 0.00 3.18
3033 4948 8.321353 CAGTAGCCTTGGTATTCATCCATATAA 58.679 37.037 0.00 0.00 34.75 0.98
3122 5066 1.131693 GGCAAATACACCTACAACGGC 59.868 52.381 0.00 0.00 0.00 5.68
3186 5130 2.622436 GGAAGTGCAGAGGTGATGTAC 58.378 52.381 0.00 0.00 33.96 2.90
3444 5397 9.769093 TTCACACTATATATATTCGATGTCGTG 57.231 33.333 0.00 0.00 40.80 4.35
3465 5418 7.638683 GTCGTGGATAGTTGCATATTTTTGTAC 59.361 37.037 0.00 0.00 0.00 2.90
3477 5430 6.032460 GCATATTTTTGTACAAACTCGCTCAC 59.968 38.462 20.43 3.56 0.00 3.51
3486 5439 5.751243 ACAAACTCGCTCACACTTAAATT 57.249 34.783 0.00 0.00 0.00 1.82
3493 5446 6.366332 ACTCGCTCACACTTAAATTAGTTGAG 59.634 38.462 11.92 11.92 36.92 3.02
3588 5541 8.595362 AGCTAGCTAGGAAAAATTAATTTGGT 57.405 30.769 17.69 8.51 0.00 3.67
3672 5625 0.179000 GACAGGTTGGCCTCATCGAT 59.821 55.000 3.32 0.00 44.97 3.59
3674 5627 1.837439 ACAGGTTGGCCTCATCGATAA 59.163 47.619 3.32 0.00 44.97 1.75
3865 5818 5.163774 GGTGAGTTTCTCTACCACTACTACG 60.164 48.000 10.88 0.00 34.34 3.51
3876 5829 5.458041 ACCACTACTACGTACAAACATGT 57.542 39.130 0.00 0.00 0.00 3.21
3938 5891 2.439507 TCTGGAGCCCACCAAGAATATC 59.560 50.000 0.00 0.00 39.59 1.63
3944 5897 3.010584 AGCCCACCAAGAATATCACACTT 59.989 43.478 0.00 0.00 0.00 3.16
3971 5924 1.898863 AGGTGAAGCATGGGGAGTAT 58.101 50.000 0.00 0.00 0.00 2.12
3995 5948 4.143333 GAAGCGGCGTGGCCTCTA 62.143 66.667 9.37 0.00 43.49 2.43
4013 5966 3.894427 CTCTAGGAGAAGCTATTGAGGCA 59.106 47.826 0.00 0.00 0.00 4.75
4016 5969 2.843113 AGGAGAAGCTATTGAGGCAGTT 59.157 45.455 0.00 0.00 0.00 3.16
4028 5981 0.465287 AGGCAGTTGCACCCAAAAAG 59.535 50.000 6.43 0.00 44.36 2.27
4042 5995 3.132925 CCAAAAAGGGCACTTGACAATG 58.867 45.455 0.00 0.00 36.93 2.82
4047 6000 4.009352 AAAGGGCACTTGACAATGGATGT 61.009 43.478 0.00 0.00 39.82 3.06
4059 6012 4.129380 ACAATGGATGTCACATGATACGG 58.871 43.478 0.00 0.00 37.96 4.02
4063 6016 2.138320 GATGTCACATGATACGGCTGG 58.862 52.381 0.00 0.00 0.00 4.85
4073 6026 0.759346 ATACGGCTGGCTTCCCTTAG 59.241 55.000 0.00 0.00 0.00 2.18
4149 6102 4.202326 ACACTCTTAACCGAACAACCATCT 60.202 41.667 0.00 0.00 0.00 2.90
4158 6111 3.306364 CCGAACAACCATCTCTCAAGACT 60.306 47.826 0.00 0.00 33.32 3.24
4236 6189 0.538977 TTCTTCTCACCCTCGTCGGT 60.539 55.000 0.00 0.00 36.18 4.69
4716 6669 8.651391 TGTGTAGTTCTCGATGTTTTCTTTTA 57.349 30.769 0.00 0.00 0.00 1.52
4788 6741 5.649782 ACGAAAGAAAAATGGATCATGCT 57.350 34.783 0.00 0.00 0.00 3.79
4930 6883 8.953368 AATCGGAGTTACGGTTTAAAAGATAT 57.047 30.769 0.00 0.00 32.43 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.110486 GTGAAGTCCCTTCCTTGCCA 59.890 55.000 1.80 0.00 39.51 4.92
2 3 0.110486 TGTGAAGTCCCTTCCTTGCC 59.890 55.000 1.80 0.00 39.51 4.52
3 4 1.528129 CTGTGAAGTCCCTTCCTTGC 58.472 55.000 1.80 0.00 39.51 4.01
4 5 1.421646 ACCTGTGAAGTCCCTTCCTTG 59.578 52.381 1.80 0.00 39.51 3.61
5 6 1.700186 GACCTGTGAAGTCCCTTCCTT 59.300 52.381 1.80 0.00 39.51 3.36
6 7 1.353091 GACCTGTGAAGTCCCTTCCT 58.647 55.000 1.80 0.00 39.51 3.36
8 9 2.930826 TTGACCTGTGAAGTCCCTTC 57.069 50.000 0.00 0.00 40.54 3.46
10 11 2.338809 TCATTGACCTGTGAAGTCCCT 58.661 47.619 0.00 0.00 33.09 4.20
16 17 3.008375 CCTCCTCTTCATTGACCTGTGAA 59.992 47.826 0.00 0.00 33.63 3.18
17 18 2.568956 CCTCCTCTTCATTGACCTGTGA 59.431 50.000 0.00 0.00 0.00 3.58
18 19 2.568956 TCCTCCTCTTCATTGACCTGTG 59.431 50.000 0.00 0.00 0.00 3.66
19 20 2.907892 TCCTCCTCTTCATTGACCTGT 58.092 47.619 0.00 0.00 0.00 4.00
20 21 3.806380 CATCCTCCTCTTCATTGACCTG 58.194 50.000 0.00 0.00 0.00 4.00
21 22 2.172293 GCATCCTCCTCTTCATTGACCT 59.828 50.000 0.00 0.00 0.00 3.85
22 23 2.092753 TGCATCCTCCTCTTCATTGACC 60.093 50.000 0.00 0.00 0.00 4.02
24 25 2.419159 CGTGCATCCTCCTCTTCATTGA 60.419 50.000 0.00 0.00 0.00 2.57
25 26 1.938577 CGTGCATCCTCCTCTTCATTG 59.061 52.381 0.00 0.00 0.00 2.82
26 27 1.745141 GCGTGCATCCTCCTCTTCATT 60.745 52.381 0.00 0.00 0.00 2.57
27 28 0.179062 GCGTGCATCCTCCTCTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
28 29 1.219124 GCGTGCATCCTCCTCTTCA 59.781 57.895 0.00 0.00 0.00 3.02
29 30 1.522580 GGCGTGCATCCTCCTCTTC 60.523 63.158 0.00 0.00 0.00 2.87
30 31 2.586792 GGCGTGCATCCTCCTCTT 59.413 61.111 0.00 0.00 0.00 2.85
31 32 3.474570 GGGCGTGCATCCTCCTCT 61.475 66.667 7.73 0.00 0.00 3.69
32 33 4.554036 GGGGCGTGCATCCTCCTC 62.554 72.222 7.73 0.00 0.00 3.71
35 36 4.864334 CAGGGGGCGTGCATCCTC 62.864 72.222 7.73 3.88 0.00 3.71
48 49 2.006805 AAGGTTGACCACACCCAGGG 62.007 60.000 2.85 2.85 38.89 4.45
49 50 0.823356 CAAGGTTGACCACACCCAGG 60.823 60.000 2.56 0.00 38.89 4.45
50 51 0.182537 TCAAGGTTGACCACACCCAG 59.817 55.000 2.56 0.00 38.89 4.45
51 52 0.850100 ATCAAGGTTGACCACACCCA 59.150 50.000 2.56 0.00 40.49 4.51
52 53 1.886542 GAATCAAGGTTGACCACACCC 59.113 52.381 2.56 0.00 40.49 4.61
53 54 1.886542 GGAATCAAGGTTGACCACACC 59.113 52.381 2.56 0.00 40.49 4.16
54 55 1.535462 CGGAATCAAGGTTGACCACAC 59.465 52.381 2.56 0.00 40.49 3.82
55 56 1.418264 TCGGAATCAAGGTTGACCACA 59.582 47.619 2.56 0.00 40.49 4.17
56 57 1.804748 GTCGGAATCAAGGTTGACCAC 59.195 52.381 2.56 0.00 40.49 4.16
57 58 1.418264 TGTCGGAATCAAGGTTGACCA 59.582 47.619 2.56 0.00 40.49 4.02
58 59 2.178912 TGTCGGAATCAAGGTTGACC 57.821 50.000 0.00 0.00 40.49 4.02
59 60 2.096417 CGTTGTCGGAATCAAGGTTGAC 60.096 50.000 0.00 0.00 40.49 3.18
60 61 2.139917 CGTTGTCGGAATCAAGGTTGA 58.860 47.619 0.00 0.00 42.14 3.18
61 62 2.594529 CGTTGTCGGAATCAAGGTTG 57.405 50.000 0.00 0.00 0.00 3.77
73 74 1.728426 GACGTCACTCCCGTTGTCG 60.728 63.158 11.55 0.00 38.92 4.35
74 75 0.386985 GAGACGTCACTCCCGTTGTC 60.387 60.000 19.50 0.00 38.92 3.18
75 76 1.658673 GAGACGTCACTCCCGTTGT 59.341 57.895 19.50 0.00 38.92 3.32
76 77 4.554163 GAGACGTCACTCCCGTTG 57.446 61.111 19.50 0.00 38.92 4.10
90 91 1.067142 CCCAGTCAATTTCGTCGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
91 92 1.067142 TCCCAGTCAATTTCGTCGGAG 60.067 52.381 0.00 0.00 0.00 4.63
92 93 0.970640 TCCCAGTCAATTTCGTCGGA 59.029 50.000 0.00 0.00 0.00 4.55
93 94 1.076332 GTCCCAGTCAATTTCGTCGG 58.924 55.000 0.00 0.00 0.00 4.79
94 95 1.726791 CTGTCCCAGTCAATTTCGTCG 59.273 52.381 0.00 0.00 0.00 5.12
95 96 1.464997 GCTGTCCCAGTCAATTTCGTC 59.535 52.381 0.00 0.00 33.43 4.20
96 97 1.523758 GCTGTCCCAGTCAATTTCGT 58.476 50.000 0.00 0.00 33.43 3.85
97 98 0.804989 GGCTGTCCCAGTCAATTTCG 59.195 55.000 0.00 0.00 35.96 3.46
98 99 1.815003 CAGGCTGTCCCAGTCAATTTC 59.185 52.381 6.28 0.00 38.73 2.17
99 100 1.145738 ACAGGCTGTCCCAGTCAATTT 59.854 47.619 15.88 0.00 38.73 1.82
100 101 0.773644 ACAGGCTGTCCCAGTCAATT 59.226 50.000 15.88 0.00 38.73 2.32
101 102 1.556911 CTACAGGCTGTCCCAGTCAAT 59.443 52.381 25.80 0.00 38.73 2.57
102 103 0.976641 CTACAGGCTGTCCCAGTCAA 59.023 55.000 25.80 2.48 38.73 3.18
103 104 0.178932 ACTACAGGCTGTCCCAGTCA 60.179 55.000 25.80 3.32 38.73 3.41
104 105 0.977395 AACTACAGGCTGTCCCAGTC 59.023 55.000 25.80 0.00 36.18 3.51
105 106 1.435256 AAACTACAGGCTGTCCCAGT 58.565 50.000 25.80 19.19 37.14 4.00
106 107 2.568623 AAAACTACAGGCTGTCCCAG 57.431 50.000 25.80 18.48 35.39 4.45
123 124 9.490379 TTTAAACAGGCAAACTTGAACTAAAAA 57.510 25.926 0.00 0.00 0.00 1.94
124 125 8.927721 GTTTAAACAGGCAAACTTGAACTAAAA 58.072 29.630 13.51 0.00 32.96 1.52
125 126 8.308207 AGTTTAAACAGGCAAACTTGAACTAAA 58.692 29.630 20.06 0.00 41.09 1.85
126 127 7.832769 AGTTTAAACAGGCAAACTTGAACTAA 58.167 30.769 20.06 0.00 41.09 2.24
127 128 7.399245 AGTTTAAACAGGCAAACTTGAACTA 57.601 32.000 20.06 0.00 41.09 2.24
128 129 6.280855 AGTTTAAACAGGCAAACTTGAACT 57.719 33.333 20.06 0.00 41.09 3.01
134 135 5.570234 TTCGAAGTTTAAACAGGCAAACT 57.430 34.783 20.06 0.00 44.72 2.66
135 136 5.746721 ACATTCGAAGTTTAAACAGGCAAAC 59.253 36.000 20.06 0.00 35.36 2.93
136 137 5.897050 ACATTCGAAGTTTAAACAGGCAAA 58.103 33.333 20.06 8.07 0.00 3.68
137 138 5.508200 ACATTCGAAGTTTAAACAGGCAA 57.492 34.783 20.06 7.94 0.00 4.52
138 139 5.508200 AACATTCGAAGTTTAAACAGGCA 57.492 34.783 20.06 0.20 0.00 4.75
139 140 7.357303 TCTAAACATTCGAAGTTTAAACAGGC 58.643 34.615 20.06 7.86 39.96 4.85
140 141 9.166126 GTTCTAAACATTCGAAGTTTAAACAGG 57.834 33.333 20.06 8.71 39.96 4.00
141 142 9.931210 AGTTCTAAACATTCGAAGTTTAAACAG 57.069 29.630 27.07 20.53 39.96 3.16
147 148 9.665264 GATCAAAGTTCTAAACATTCGAAGTTT 57.335 29.630 21.19 21.19 39.54 2.66
148 149 8.009974 CGATCAAAGTTCTAAACATTCGAAGTT 58.990 33.333 3.35 5.64 33.14 2.66
149 150 7.384115 TCGATCAAAGTTCTAAACATTCGAAGT 59.616 33.333 3.35 0.00 0.00 3.01
150 151 7.729836 TCGATCAAAGTTCTAAACATTCGAAG 58.270 34.615 3.35 0.00 0.00 3.79
151 152 7.646446 TCGATCAAAGTTCTAAACATTCGAA 57.354 32.000 0.00 0.00 0.00 3.71
152 153 7.384115 ACTTCGATCAAAGTTCTAAACATTCGA 59.616 33.333 0.00 0.00 36.02 3.71
153 154 7.510630 ACTTCGATCAAAGTTCTAAACATTCG 58.489 34.615 0.00 0.00 36.02 3.34
154 155 9.959775 CTACTTCGATCAAAGTTCTAAACATTC 57.040 33.333 3.99 0.00 40.01 2.67
155 156 8.936864 CCTACTTCGATCAAAGTTCTAAACATT 58.063 33.333 3.99 0.00 40.01 2.71
156 157 8.311836 TCCTACTTCGATCAAAGTTCTAAACAT 58.688 33.333 3.99 0.00 40.01 2.71
157 158 7.663827 TCCTACTTCGATCAAAGTTCTAAACA 58.336 34.615 3.99 0.00 40.01 2.83
158 159 8.530269 TTCCTACTTCGATCAAAGTTCTAAAC 57.470 34.615 3.99 0.00 40.01 2.01
161 162 9.967346 CATATTCCTACTTCGATCAAAGTTCTA 57.033 33.333 3.99 0.00 40.01 2.10
162 163 8.696374 TCATATTCCTACTTCGATCAAAGTTCT 58.304 33.333 3.99 0.00 40.01 3.01
163 164 8.873215 TCATATTCCTACTTCGATCAAAGTTC 57.127 34.615 3.99 0.00 40.01 3.01
164 165 9.099454 GTTCATATTCCTACTTCGATCAAAGTT 57.901 33.333 3.99 0.00 40.01 2.66
165 166 7.435488 CGTTCATATTCCTACTTCGATCAAAGT 59.565 37.037 4.15 4.15 42.10 2.66
166 167 7.648112 TCGTTCATATTCCTACTTCGATCAAAG 59.352 37.037 0.00 0.00 0.00 2.77
167 168 7.485810 TCGTTCATATTCCTACTTCGATCAAA 58.514 34.615 0.00 0.00 0.00 2.69
168 169 7.034685 TCGTTCATATTCCTACTTCGATCAA 57.965 36.000 0.00 0.00 0.00 2.57
169 170 6.628919 TCGTTCATATTCCTACTTCGATCA 57.371 37.500 0.00 0.00 0.00 2.92
170 171 7.140048 ACTTCGTTCATATTCCTACTTCGATC 58.860 38.462 0.00 0.00 0.00 3.69
171 172 7.040473 ACTTCGTTCATATTCCTACTTCGAT 57.960 36.000 0.00 0.00 0.00 3.59
172 173 6.446781 ACTTCGTTCATATTCCTACTTCGA 57.553 37.500 0.00 0.00 0.00 3.71
173 174 7.416022 ACTACTTCGTTCATATTCCTACTTCG 58.584 38.462 0.00 0.00 0.00 3.79
176 177 9.570468 TCATACTACTTCGTTCATATTCCTACT 57.430 33.333 0.00 0.00 0.00 2.57
179 180 9.698309 CATTCATACTACTTCGTTCATATTCCT 57.302 33.333 0.00 0.00 0.00 3.36
180 181 9.477484 ACATTCATACTACTTCGTTCATATTCC 57.523 33.333 0.00 0.00 0.00 3.01
183 184 9.181805 CGAACATTCATACTACTTCGTTCATAT 57.818 33.333 0.00 0.00 32.92 1.78
184 185 8.186163 ACGAACATTCATACTACTTCGTTCATA 58.814 33.333 0.00 0.00 40.45 2.15
185 186 7.033791 ACGAACATTCATACTACTTCGTTCAT 58.966 34.615 0.00 0.00 40.45 2.57
186 187 6.384224 ACGAACATTCATACTACTTCGTTCA 58.616 36.000 0.00 0.00 40.45 3.18
189 190 8.746922 TTAAACGAACATTCATACTACTTCGT 57.253 30.769 0.00 0.00 44.01 3.85
221 222 2.956333 ACCCAGAACAGCAAAACCTTAC 59.044 45.455 0.00 0.00 0.00 2.34
222 223 2.955660 CACCCAGAACAGCAAAACCTTA 59.044 45.455 0.00 0.00 0.00 2.69
223 224 1.756538 CACCCAGAACAGCAAAACCTT 59.243 47.619 0.00 0.00 0.00 3.50
224 225 1.402787 CACCCAGAACAGCAAAACCT 58.597 50.000 0.00 0.00 0.00 3.50
255 256 1.065551 GTGGCGTCTTCAAAAGTTGCT 59.934 47.619 0.00 0.00 32.82 3.91
305 306 7.278868 GTGTGTGGAATAGAACTTAGGAGATTG 59.721 40.741 0.00 0.00 0.00 2.67
306 307 7.331791 GTGTGTGGAATAGAACTTAGGAGATT 58.668 38.462 0.00 0.00 0.00 2.40
309 310 5.103000 CGTGTGTGGAATAGAACTTAGGAG 58.897 45.833 0.00 0.00 0.00 3.69
310 311 4.525487 ACGTGTGTGGAATAGAACTTAGGA 59.475 41.667 0.00 0.00 0.00 2.94
313 314 6.017770 CCAAAACGTGTGTGGAATAGAACTTA 60.018 38.462 6.58 0.00 34.05 2.24
316 317 4.035909 ACCAAAACGTGTGTGGAATAGAAC 59.964 41.667 16.85 0.00 36.23 3.01
319 320 3.851838 GCACCAAAACGTGTGTGGAATAG 60.852 47.826 16.85 6.88 36.08 1.73
324 325 1.226831 GGCACCAAAACGTGTGTGG 60.227 57.895 10.11 10.11 36.08 4.17
344 345 6.205464 GCATCTCCAATAGCTGCAGTATTTTA 59.795 38.462 16.64 7.47 44.94 1.52
354 355 3.492383 CGTTGTAGCATCTCCAATAGCTG 59.508 47.826 0.00 0.00 37.94 4.24
363 364 0.855349 CCGCATCGTTGTAGCATCTC 59.145 55.000 0.00 0.00 0.00 2.75
367 368 1.428370 GCATCCGCATCGTTGTAGCA 61.428 55.000 0.00 0.00 38.36 3.49
390 392 1.470098 GCAGGTATTCCAGTGTTGCAG 59.530 52.381 0.00 0.00 32.45 4.41
395 397 3.441101 TCTGTAGCAGGTATTCCAGTGT 58.559 45.455 0.00 0.00 35.89 3.55
443 449 3.030652 CACCTTTCACGGTGCCAC 58.969 61.111 2.51 0.00 46.98 5.01
448 454 2.158667 AGATTCCAACACCTTTCACGGT 60.159 45.455 0.00 0.00 37.93 4.83
451 457 5.523369 CAGAAAGATTCCAACACCTTTCAC 58.477 41.667 13.83 0.00 44.00 3.18
457 463 2.238521 TGGCAGAAAGATTCCAACACC 58.761 47.619 0.00 0.00 0.00 4.16
468 474 2.629656 CGCACCCCTTGGCAGAAAG 61.630 63.158 0.00 0.00 33.59 2.62
489 495 4.112341 GCTGGGCTGCAAAGCTCG 62.112 66.667 15.91 0.00 38.32 5.03
533 539 1.831106 GATTTTCAATGGGGTGGGTCC 59.169 52.381 0.00 0.00 0.00 4.46
535 541 2.539302 CTGATTTTCAATGGGGTGGGT 58.461 47.619 0.00 0.00 0.00 4.51
536 542 1.832998 CCTGATTTTCAATGGGGTGGG 59.167 52.381 0.00 0.00 0.00 4.61
537 543 1.832998 CCCTGATTTTCAATGGGGTGG 59.167 52.381 0.00 0.00 30.46 4.61
538 544 1.832998 CCCCTGATTTTCAATGGGGTG 59.167 52.381 11.13 0.00 43.52 4.61
539 545 1.273781 CCCCCTGATTTTCAATGGGGT 60.274 52.381 17.13 0.00 45.78 4.95
540 546 1.499368 CCCCCTGATTTTCAATGGGG 58.501 55.000 13.55 13.55 46.42 4.96
565 571 9.813826 CCTTCCCACAATAATTCTAGGATAATT 57.186 33.333 0.00 0.00 0.00 1.40
566 572 8.960064 ACCTTCCCACAATAATTCTAGGATAAT 58.040 33.333 0.00 0.00 0.00 1.28
567 573 8.344939 ACCTTCCCACAATAATTCTAGGATAA 57.655 34.615 0.00 0.00 0.00 1.75
568 574 7.947782 ACCTTCCCACAATAATTCTAGGATA 57.052 36.000 0.00 0.00 0.00 2.59
569 575 6.848562 ACCTTCCCACAATAATTCTAGGAT 57.151 37.500 0.00 0.00 0.00 3.24
570 576 6.652205 AACCTTCCCACAATAATTCTAGGA 57.348 37.500 0.00 0.00 0.00 2.94
571 577 6.482308 CGTAACCTTCCCACAATAATTCTAGG 59.518 42.308 0.00 0.00 0.00 3.02
572 578 7.046033 ACGTAACCTTCCCACAATAATTCTAG 58.954 38.462 0.00 0.00 0.00 2.43
573 579 6.949715 ACGTAACCTTCCCACAATAATTCTA 58.050 36.000 0.00 0.00 0.00 2.10
574 580 5.812286 ACGTAACCTTCCCACAATAATTCT 58.188 37.500 0.00 0.00 0.00 2.40
575 581 7.550196 TCTTACGTAACCTTCCCACAATAATTC 59.450 37.037 3.29 0.00 0.00 2.17
576 582 7.396418 TCTTACGTAACCTTCCCACAATAATT 58.604 34.615 3.29 0.00 0.00 1.40
577 583 6.949715 TCTTACGTAACCTTCCCACAATAAT 58.050 36.000 3.29 0.00 0.00 1.28
578 584 6.357579 TCTTACGTAACCTTCCCACAATAA 57.642 37.500 3.29 0.00 0.00 1.40
579 585 5.999205 TCTTACGTAACCTTCCCACAATA 57.001 39.130 3.29 0.00 0.00 1.90
580 586 4.895668 TCTTACGTAACCTTCCCACAAT 57.104 40.909 3.29 0.00 0.00 2.71
581 587 4.686191 TTCTTACGTAACCTTCCCACAA 57.314 40.909 3.29 0.00 0.00 3.33
582 588 4.895668 ATTCTTACGTAACCTTCCCACA 57.104 40.909 3.29 0.00 0.00 4.17
583 589 7.065216 GTAAATTCTTACGTAACCTTCCCAC 57.935 40.000 3.29 0.00 0.00 4.61
596 602 6.638168 ACGAAGGCTAACGTAAATTCTTAC 57.362 37.500 15.82 0.00 40.92 2.34
597 603 6.974622 CCTACGAAGGCTAACGTAAATTCTTA 59.025 38.462 20.89 5.53 42.77 2.10
598 604 5.809051 CCTACGAAGGCTAACGTAAATTCTT 59.191 40.000 20.89 0.00 42.77 2.52
599 605 5.346522 CCTACGAAGGCTAACGTAAATTCT 58.653 41.667 20.89 3.49 42.77 2.40
600 606 5.632445 CCTACGAAGGCTAACGTAAATTC 57.368 43.478 20.89 0.00 42.77 2.17
614 620 6.497785 ACCGATAATGATAGACCTACGAAG 57.502 41.667 0.00 0.00 0.00 3.79
615 621 7.164122 AGTACCGATAATGATAGACCTACGAA 58.836 38.462 0.00 0.00 0.00 3.85
616 622 6.705302 AGTACCGATAATGATAGACCTACGA 58.295 40.000 0.00 0.00 0.00 3.43
617 623 6.981762 AGTACCGATAATGATAGACCTACG 57.018 41.667 0.00 0.00 0.00 3.51
618 624 7.551974 TGCTAGTACCGATAATGATAGACCTAC 59.448 40.741 0.00 0.00 0.00 3.18
619 625 7.627311 TGCTAGTACCGATAATGATAGACCTA 58.373 38.462 0.00 0.00 0.00 3.08
620 626 6.482524 TGCTAGTACCGATAATGATAGACCT 58.517 40.000 0.00 0.00 0.00 3.85
621 627 6.598457 TCTGCTAGTACCGATAATGATAGACC 59.402 42.308 0.00 0.00 0.00 3.85
622 628 7.201661 CCTCTGCTAGTACCGATAATGATAGAC 60.202 44.444 0.00 0.00 0.00 2.59
623 629 6.824196 CCTCTGCTAGTACCGATAATGATAGA 59.176 42.308 0.00 0.00 0.00 1.98
624 630 6.038825 CCCTCTGCTAGTACCGATAATGATAG 59.961 46.154 0.00 0.00 0.00 2.08
625 631 5.886474 CCCTCTGCTAGTACCGATAATGATA 59.114 44.000 0.00 0.00 0.00 2.15
626 632 4.707448 CCCTCTGCTAGTACCGATAATGAT 59.293 45.833 0.00 0.00 0.00 2.45
627 633 4.079970 CCCTCTGCTAGTACCGATAATGA 58.920 47.826 0.00 0.00 0.00 2.57
628 634 3.193691 CCCCTCTGCTAGTACCGATAATG 59.806 52.174 0.00 0.00 0.00 1.90
629 635 3.075582 TCCCCTCTGCTAGTACCGATAAT 59.924 47.826 0.00 0.00 0.00 1.28
630 636 2.444388 TCCCCTCTGCTAGTACCGATAA 59.556 50.000 0.00 0.00 0.00 1.75
631 637 2.060275 TCCCCTCTGCTAGTACCGATA 58.940 52.381 0.00 0.00 0.00 2.92
632 638 0.851469 TCCCCTCTGCTAGTACCGAT 59.149 55.000 0.00 0.00 0.00 4.18
633 639 0.851469 ATCCCCTCTGCTAGTACCGA 59.149 55.000 0.00 0.00 0.00 4.69
634 640 0.962489 CATCCCCTCTGCTAGTACCG 59.038 60.000 0.00 0.00 0.00 4.02
635 641 2.158445 TCTCATCCCCTCTGCTAGTACC 60.158 54.545 0.00 0.00 0.00 3.34
636 642 2.888414 GTCTCATCCCCTCTGCTAGTAC 59.112 54.545 0.00 0.00 0.00 2.73
637 643 2.158445 GGTCTCATCCCCTCTGCTAGTA 60.158 54.545 0.00 0.00 0.00 1.82
638 644 1.412361 GGTCTCATCCCCTCTGCTAGT 60.412 57.143 0.00 0.00 0.00 2.57
639 645 1.337118 GGTCTCATCCCCTCTGCTAG 58.663 60.000 0.00 0.00 0.00 3.42
640 646 0.468214 CGGTCTCATCCCCTCTGCTA 60.468 60.000 0.00 0.00 0.00 3.49
641 647 1.760086 CGGTCTCATCCCCTCTGCT 60.760 63.158 0.00 0.00 0.00 4.24
642 648 2.818132 CGGTCTCATCCCCTCTGC 59.182 66.667 0.00 0.00 0.00 4.26
643 649 2.025767 CTGCGGTCTCATCCCCTCTG 62.026 65.000 0.00 0.00 0.00 3.35
644 650 1.760086 CTGCGGTCTCATCCCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
645 651 0.755698 TACTGCGGTCTCATCCCCTC 60.756 60.000 0.00 0.00 0.00 4.30
646 652 0.105453 ATACTGCGGTCTCATCCCCT 60.105 55.000 0.00 0.00 0.00 4.79
647 653 0.318762 GATACTGCGGTCTCATCCCC 59.681 60.000 0.00 0.00 0.00 4.81
648 654 0.039074 CGATACTGCGGTCTCATCCC 60.039 60.000 0.00 0.00 0.00 3.85
649 655 0.039074 CCGATACTGCGGTCTCATCC 60.039 60.000 0.00 0.00 46.07 3.51
650 656 3.481009 CCGATACTGCGGTCTCATC 57.519 57.895 0.00 0.00 46.07 2.92
706 713 0.671251 TTTTCGTGTTCCATGCCACC 59.329 50.000 0.00 0.00 0.00 4.61
821 829 3.668386 GGAAGTGTCCGGGCTTTG 58.332 61.111 7.97 0.00 33.05 2.77
841 849 2.161012 TCCACTGTCGACGAGTATTCAC 59.839 50.000 16.68 0.00 0.00 3.18
848 862 0.109086 AGCATTCCACTGTCGACGAG 60.109 55.000 11.62 11.73 0.00 4.18
867 881 7.925993 AGCGTCAATATTAATTCCATTTCGAA 58.074 30.769 0.00 0.00 0.00 3.71
868 882 7.490962 AGCGTCAATATTAATTCCATTTCGA 57.509 32.000 0.00 0.00 0.00 3.71
869 883 8.560576 AAAGCGTCAATATTAATTCCATTTCG 57.439 30.769 0.00 0.00 0.00 3.46
871 885 9.019764 CGAAAAGCGTCAATATTAATTCCATTT 57.980 29.630 0.00 0.00 34.64 2.32
872 886 8.560576 CGAAAAGCGTCAATATTAATTCCATT 57.439 30.769 0.00 0.00 34.64 3.16
934 2333 8.292448 GTGCTACACGCTAGGTTTTATATAGTA 58.708 37.037 0.00 0.00 40.11 1.82
935 2334 7.014038 AGTGCTACACGCTAGGTTTTATATAGT 59.986 37.037 0.00 0.00 39.64 2.12
1079 2528 1.673808 GATCACGGCGTACTTCCCCT 61.674 60.000 14.22 0.00 0.00 4.79
1131 2580 0.599204 GCTTGTCGAACCGGAAGACA 60.599 55.000 20.95 20.95 42.36 3.41
1204 2655 4.537288 TGGAGTATATCATGGATGCATGGT 59.463 41.667 24.85 21.40 33.61 3.55
1205 2656 5.106876 TGGAGTATATCATGGATGCATGG 57.893 43.478 24.85 8.55 33.61 3.66
1206 2657 6.354130 TGATGGAGTATATCATGGATGCATG 58.646 40.000 20.28 20.28 30.03 4.06
1207 2658 6.386050 TCTGATGGAGTATATCATGGATGCAT 59.614 38.462 0.00 0.00 34.33 3.96
1211 2662 9.736414 CTTTTTCTGATGGAGTATATCATGGAT 57.264 33.333 0.00 0.00 34.33 3.41
1213 2664 9.565090 TTCTTTTTCTGATGGAGTATATCATGG 57.435 33.333 0.00 0.00 34.33 3.66
1216 2667 7.716998 GGCTTCTTTTTCTGATGGAGTATATCA 59.283 37.037 0.00 0.00 33.76 2.15
1218 2669 7.577303 TGGCTTCTTTTTCTGATGGAGTATAT 58.423 34.615 0.00 0.00 0.00 0.86
1247 2712 3.054139 ACTGTGTCATCCTTACCATGCAT 60.054 43.478 0.00 0.00 0.00 3.96
1248 2713 2.305635 ACTGTGTCATCCTTACCATGCA 59.694 45.455 0.00 0.00 0.00 3.96
1249 2714 2.939103 GACTGTGTCATCCTTACCATGC 59.061 50.000 0.00 0.00 32.09 4.06
1250 2715 3.119137 TCGACTGTGTCATCCTTACCATG 60.119 47.826 0.00 0.00 32.09 3.66
1251 2716 3.096852 TCGACTGTGTCATCCTTACCAT 58.903 45.455 0.00 0.00 32.09 3.55
1260 2725 4.725790 TGATGAAGATCGACTGTGTCAT 57.274 40.909 0.00 0.00 32.09 3.06
1265 2730 3.629855 ACGAGATGATGAAGATCGACTGT 59.370 43.478 0.00 0.00 37.16 3.55
1304 2770 3.546815 CCTGCAAACAAAGAAGAGACACG 60.547 47.826 0.00 0.00 0.00 4.49
1307 2773 3.627577 TCACCTGCAAACAAAGAAGAGAC 59.372 43.478 0.00 0.00 0.00 3.36
1309 2775 4.637483 TTCACCTGCAAACAAAGAAGAG 57.363 40.909 0.00 0.00 0.00 2.85
1358 2824 1.225704 CTTGCTAGCCTCCTTGGGG 59.774 63.158 13.29 0.00 36.00 4.96
1372 2838 3.102097 GCGGTAGCATGGACTTGC 58.898 61.111 0.00 2.30 44.35 4.01
1382 2848 0.169009 CCTTTTGAAGCAGCGGTAGC 59.831 55.000 0.00 0.00 45.58 3.58
1384 2850 1.241315 GGCCTTTTGAAGCAGCGGTA 61.241 55.000 0.00 0.00 0.00 4.02
1388 2854 0.104671 TGTTGGCCTTTTGAAGCAGC 59.895 50.000 3.32 0.00 0.00 5.25
1451 2917 6.443792 GGAGTATTAAATTTTGCATACCCCG 58.556 40.000 0.00 0.00 0.00 5.73
1474 2944 6.483307 TGCGTCAATTAATTCAGATTAGAGGG 59.517 38.462 0.00 0.00 0.00 4.30
1475 2945 7.439356 TCTGCGTCAATTAATTCAGATTAGAGG 59.561 37.037 11.37 5.81 0.00 3.69
1476 2946 8.272176 GTCTGCGTCAATTAATTCAGATTAGAG 58.728 37.037 16.14 0.00 33.80 2.43
1478 2948 8.136057 AGTCTGCGTCAATTAATTCAGATTAG 57.864 34.615 16.14 5.17 33.80 1.73
1480 2950 6.820656 AGAGTCTGCGTCAATTAATTCAGATT 59.179 34.615 16.14 13.32 33.80 2.40
1481 2951 6.344500 AGAGTCTGCGTCAATTAATTCAGAT 58.656 36.000 16.14 8.71 33.80 2.90
1483 2953 6.975197 TCTAGAGTCTGCGTCAATTAATTCAG 59.025 38.462 1.86 3.23 0.00 3.02
1485 2955 7.197017 TCTCTAGAGTCTGCGTCAATTAATTC 58.803 38.462 19.21 0.00 0.00 2.17
1486 2956 7.101652 TCTCTAGAGTCTGCGTCAATTAATT 57.898 36.000 19.21 0.00 0.00 1.40
1489 2959 6.095580 ACATTCTCTAGAGTCTGCGTCAATTA 59.904 38.462 19.21 0.00 0.00 1.40
1495 2965 2.685897 GGACATTCTCTAGAGTCTGCGT 59.314 50.000 19.21 10.44 0.00 5.24
1496 2966 2.948979 AGGACATTCTCTAGAGTCTGCG 59.051 50.000 19.21 7.57 0.00 5.18
1501 2971 3.011821 TGACCCAGGACATTCTCTAGAGT 59.988 47.826 19.21 0.45 0.00 3.24
1502 2972 3.636679 TGACCCAGGACATTCTCTAGAG 58.363 50.000 13.98 13.98 0.00 2.43
1503 2973 3.757947 TGACCCAGGACATTCTCTAGA 57.242 47.619 0.00 0.00 0.00 2.43
1504 2974 4.026744 TCTTGACCCAGGACATTCTCTAG 58.973 47.826 0.00 0.00 0.00 2.43
1505 2975 4.061131 TCTTGACCCAGGACATTCTCTA 57.939 45.455 0.00 0.00 0.00 2.43
1506 2976 2.907892 TCTTGACCCAGGACATTCTCT 58.092 47.619 0.00 0.00 0.00 3.10
1507 2977 3.922171 ATCTTGACCCAGGACATTCTC 57.078 47.619 0.00 0.00 0.00 2.87
1508 2978 8.180165 TCTATATATCTTGACCCAGGACATTCT 58.820 37.037 0.00 0.00 0.00 2.40
1509 2979 8.367660 TCTATATATCTTGACCCAGGACATTC 57.632 38.462 0.00 0.00 0.00 2.67
1510 2980 8.923838 ATCTATATATCTTGACCCAGGACATT 57.076 34.615 0.00 0.00 0.00 2.71
1512 2982 7.478721 TGATCTATATATCTTGACCCAGGACA 58.521 38.462 0.00 0.00 0.00 4.02
1513 2983 7.069331 CCTGATCTATATATCTTGACCCAGGAC 59.931 44.444 17.27 0.00 36.02 3.85
1514 2984 7.128751 CCTGATCTATATATCTTGACCCAGGA 58.871 42.308 17.27 0.00 36.02 3.86
1515 2985 6.183360 GCCTGATCTATATATCTTGACCCAGG 60.183 46.154 17.54 17.54 36.53 4.45
1516 2986 6.183360 GGCCTGATCTATATATCTTGACCCAG 60.183 46.154 0.00 0.00 0.00 4.45
1518 2988 5.902431 AGGCCTGATCTATATATCTTGACCC 59.098 44.000 3.11 0.00 0.00 4.46
1519 2989 7.124901 TCAAGGCCTGATCTATATATCTTGACC 59.875 40.741 5.69 0.00 34.92 4.02
1532 3093 5.163478 GCACATTTAAATCAAGGCCTGATCT 60.163 40.000 5.69 0.73 44.43 2.75
1540 3101 3.055963 TGGCCTGCACATTTAAATCAAGG 60.056 43.478 3.32 4.49 0.00 3.61
1546 3107 0.600557 CCGTGGCCTGCACATTTAAA 59.399 50.000 3.32 0.00 0.00 1.52
1746 3313 6.293790 GGGATTGTACTGAAACTTGGTGTTAC 60.294 42.308 0.00 0.00 38.03 2.50
1832 3399 6.677675 GCATAAATTCATGTGTTGATCGGTCA 60.678 38.462 0.00 0.00 33.34 4.02
1866 3433 9.027129 TCGGTGTTTGTATCTAATAAGAATTCG 57.973 33.333 0.00 0.00 34.73 3.34
1877 3444 5.456548 TGAAGTGTCGGTGTTTGTATCTA 57.543 39.130 0.00 0.00 0.00 1.98
1895 3462 6.638468 GCAAAAAGAGGTTAGACACAATGAAG 59.362 38.462 0.00 0.00 0.00 3.02
1902 3469 4.798574 CCATGCAAAAAGAGGTTAGACAC 58.201 43.478 0.00 0.00 0.00 3.67
2081 3648 4.853468 TGTAACATAAGGATCCTTGCCA 57.147 40.909 33.18 16.84 37.47 4.92
2549 4291 6.600032 ACCAACACCCCTTTTATTTTGTTTTC 59.400 34.615 0.00 0.00 0.00 2.29
2591 4334 0.037326 TCATTCAGGACGACACAGGC 60.037 55.000 0.00 0.00 0.00 4.85
2595 4338 3.560068 ACAAAGTTCATTCAGGACGACAC 59.440 43.478 0.00 0.00 0.00 3.67
2602 4345 8.647143 AATGTTTGTTACAAAGTTCATTCAGG 57.353 30.769 11.07 0.00 40.89 3.86
2625 4368 2.417652 ACTGGAAAAGGCCCCAAAAAT 58.582 42.857 0.00 0.00 31.11 1.82
2631 4375 0.034380 GTCCTACTGGAAAAGGCCCC 60.034 60.000 0.00 0.00 45.18 5.80
2696 4443 6.435292 ACCTAACTCTTGTACATGTCCTTT 57.565 37.500 0.00 1.89 0.00 3.11
2745 4492 4.646040 TCATGAAATGGTTAGATGCCTTGG 59.354 41.667 0.00 0.00 46.73 3.61
2801 4551 8.978874 ATACAATACAAAGTTGCTCATATGGA 57.021 30.769 2.13 0.00 0.00 3.41
2925 4678 3.458189 CAGTAGCTAAATGGTCCTTCGG 58.542 50.000 0.00 0.00 0.00 4.30
2926 4679 2.866762 GCAGTAGCTAAATGGTCCTTCG 59.133 50.000 0.00 0.00 37.91 3.79
3033 4948 9.010767 AGTTATGGGGTTTCTGGTTATATTACT 57.989 33.333 0.00 0.00 0.00 2.24
3047 4962 8.608185 AAATACATCAATCAGTTATGGGGTTT 57.392 30.769 0.00 0.00 0.00 3.27
3122 5066 1.864435 GCGGTAGCATTGTACTCCTCG 60.864 57.143 0.00 0.00 44.35 4.63
3186 5130 2.032549 CGTCAAGTTTGAGTGCCTTCAG 60.033 50.000 0.00 0.00 37.98 3.02
3444 5397 9.855021 AGTTTGTACAAAAATATGCAACTATCC 57.145 29.630 22.14 4.70 31.33 2.59
3465 5418 6.888430 ACTAATTTAAGTGTGAGCGAGTTTG 58.112 36.000 0.00 0.00 0.00 2.93
3545 5498 7.402862 AGCTAGCTAATTTAAGGGTCTTCAAA 58.597 34.615 17.69 0.00 0.00 2.69
3588 5541 7.673926 TCCAGCTGGAGTACACATATGATATAA 59.326 37.037 32.00 1.97 39.78 0.98
3672 5625 1.153449 CCCGCTTGGAGCATCGTTA 60.153 57.895 0.50 0.00 42.58 3.18
3674 5627 3.390521 TCCCGCTTGGAGCATCGT 61.391 61.111 0.50 0.00 42.58 3.73
3711 5664 1.583556 TCTTCTGGGCAATGGCTCTA 58.416 50.000 6.78 0.00 42.67 2.43
3718 5671 7.083062 TCATTCTACATATCTTCTGGGCAAT 57.917 36.000 0.00 0.00 0.00 3.56
3893 5846 9.787435 AGACCTGTAAATAAATCTTTACACACA 57.213 29.630 5.54 0.00 43.26 3.72
3918 5871 2.173356 TGATATTCTTGGTGGGCTCCAG 59.827 50.000 0.00 0.00 38.80 3.86
3938 5891 2.620251 TCACCTTCTCCACAAGTGTG 57.380 50.000 4.38 4.38 45.23 3.82
3944 5897 1.271543 CCATGCTTCACCTTCTCCACA 60.272 52.381 0.00 0.00 0.00 4.17
3971 5924 1.578926 CCACGCCGCTTCAATGAAA 59.421 52.632 0.00 0.00 0.00 2.69
3995 5948 2.476199 ACTGCCTCAATAGCTTCTCCT 58.524 47.619 0.00 0.00 0.00 3.69
4028 5981 1.549203 ACATCCATTGTCAAGTGCCC 58.451 50.000 0.00 0.00 30.89 5.36
4042 5995 2.138320 CAGCCGTATCATGTGACATCC 58.862 52.381 0.00 0.00 0.00 3.51
4047 6000 0.541392 AAGCCAGCCGTATCATGTGA 59.459 50.000 0.00 0.00 0.00 3.58
4049 6002 0.179045 GGAAGCCAGCCGTATCATGT 60.179 55.000 0.00 0.00 0.00 3.21
4059 6012 4.157849 AGTAATTCTAAGGGAAGCCAGC 57.842 45.455 0.00 0.00 37.36 4.85
4063 6016 7.553044 TCTTTTGCTAGTAATTCTAAGGGAAGC 59.447 37.037 0.00 0.00 37.36 3.86
4073 6026 3.939592 ACGGGCTCTTTTGCTAGTAATTC 59.060 43.478 0.00 0.00 0.00 2.17
4117 6070 2.933906 CGGTTAAGAGTGTGTGTTGTGT 59.066 45.455 0.00 0.00 0.00 3.72
4149 6102 6.436027 AGATGGACCTATTGTAGTCTTGAGA 58.564 40.000 0.00 0.00 33.39 3.27
4236 6189 2.105649 TGTGTGAACACTAAGGCCATCA 59.894 45.455 14.28 0.00 46.55 3.07
4260 6213 4.442375 ACCACATTCAAACACGTTTTGA 57.558 36.364 16.64 16.64 36.71 2.69
4716 6669 9.839185 ATAAACACCCACTATAGTCATATAGGT 57.161 33.333 1.26 0.88 43.57 3.08
4800 6753 9.823647 TTTTAGATATTGTTTTGGAAGCAAACA 57.176 25.926 0.00 0.00 41.36 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.