Multiple sequence alignment - TraesCS7D01G099300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G099300 chr7D 100.000 5171 0 0 1 5171 59465942 59471112 0.000000e+00 9550.0
1 TraesCS7D01G099300 chr7D 80.597 1139 170 36 3094 4198 14592458 14593579 0.000000e+00 832.0
2 TraesCS7D01G099300 chr7D 82.034 885 130 15 932 1802 14590501 14591370 0.000000e+00 726.0
3 TraesCS7D01G099300 chr7D 92.492 333 24 1 202 533 59417998 59418330 4.690000e-130 475.0
4 TraesCS7D01G099300 chr7D 89.902 307 22 6 536 839 59418723 59419023 2.260000e-103 387.0
5 TraesCS7D01G099300 chr7D 84.814 349 49 4 2750 3095 14592083 14592430 1.070000e-91 348.0
6 TraesCS7D01G099300 chr7D 90.566 106 9 1 1926 2031 500619511 500619615 6.980000e-29 139.0
7 TraesCS7D01G099300 chr7A 93.660 2650 123 21 1 2634 63780959 63783579 0.000000e+00 3921.0
8 TraesCS7D01G099300 chr7A 96.389 1274 39 2 3094 4361 63784102 63785374 0.000000e+00 2091.0
9 TraesCS7D01G099300 chr7A 88.254 945 48 29 4253 5171 63785212 63786119 0.000000e+00 1072.0
10 TraesCS7D01G099300 chr7A 80.316 1138 175 34 3094 4198 13834239 13835360 0.000000e+00 815.0
11 TraesCS7D01G099300 chr7A 98.069 466 8 1 2631 3095 63783610 63784075 0.000000e+00 809.0
12 TraesCS7D01G099300 chr7A 82.127 884 137 11 932 1802 13832279 13833154 0.000000e+00 737.0
13 TraesCS7D01G099300 chr7A 84.682 346 49 4 2753 3095 13833867 13834211 4.960000e-90 342.0
14 TraesCS7D01G099300 chr7A 78.522 433 67 17 1357 1775 20513330 20512910 1.430000e-65 261.0
15 TraesCS7D01G099300 chr7A 91.743 109 8 1 1926 2034 719336175 719336282 3.230000e-32 150.0
16 TraesCS7D01G099300 chr4A 79.649 1140 184 33 3094 4201 722288411 722287288 0.000000e+00 776.0
17 TraesCS7D01G099300 chr4A 80.464 1034 176 23 3102 4126 722331455 722330439 0.000000e+00 767.0
18 TraesCS7D01G099300 chr4A 81.849 887 135 16 932 1804 722294729 722293855 0.000000e+00 723.0
19 TraesCS7D01G099300 chr4A 81.849 887 135 16 932 1804 722296080 722295206 0.000000e+00 723.0
20 TraesCS7D01G099300 chr4A 84.682 346 47 6 2753 3093 722293090 722292746 1.780000e-89 340.0
21 TraesCS7D01G099300 chr4A 91.045 67 6 0 4517 4583 531172121 531172055 1.980000e-14 91.6
22 TraesCS7D01G099300 chr3D 78.992 1190 197 36 2755 3931 15388171 15387022 0.000000e+00 763.0
23 TraesCS7D01G099300 chrUn 81.849 887 135 16 932 1804 307992587 307991713 0.000000e+00 723.0
24 TraesCS7D01G099300 chrUn 81.849 887 135 16 932 1804 335448787 335447913 0.000000e+00 723.0
25 TraesCS7D01G099300 chrUn 78.600 986 179 23 3094 4064 15723463 15724431 1.580000e-174 623.0
26 TraesCS7D01G099300 chrUn 78.093 986 181 24 3094 4064 357011652 357012617 4.460000e-165 592.0
27 TraesCS7D01G099300 chrUn 81.871 342 54 5 2654 2987 15722984 15723325 1.100000e-71 281.0
28 TraesCS7D01G099300 chrUn 81.871 342 54 5 2654 2987 357011173 357011514 1.100000e-71 281.0
29 TraesCS7D01G099300 chrUn 81.871 342 54 5 2654 2987 358520130 358519789 1.100000e-71 281.0
30 TraesCS7D01G099300 chrUn 81.579 342 55 5 2654 2987 15441856 15441515 5.100000e-70 276.0
31 TraesCS7D01G099300 chrUn 81.579 342 55 5 2654 2987 283167533 283167874 5.100000e-70 276.0
32 TraesCS7D01G099300 chr3B 78.991 852 152 20 3092 3931 22518400 22519236 1.630000e-154 556.0
33 TraesCS7D01G099300 chr3A 77.666 797 138 28 998 1761 20914067 20914856 2.840000e-122 449.0
34 TraesCS7D01G099300 chr5B 80.071 281 43 8 4323 4592 437892409 437892687 4.080000e-46 196.0
35 TraesCS7D01G099300 chr5A 83.568 213 26 4 4374 4577 471567018 471567230 1.900000e-44 191.0
36 TraesCS7D01G099300 chr1D 90.741 108 9 1 1927 2034 437855378 437855272 5.400000e-30 143.0
37 TraesCS7D01G099300 chr4B 91.346 104 8 1 1928 2031 608977355 608977253 1.940000e-29 141.0
38 TraesCS7D01G099300 chr2D 90.654 107 9 1 1928 2034 336511134 336511239 1.940000e-29 141.0
39 TraesCS7D01G099300 chr2B 90.654 107 9 1 1928 2034 50021640 50021535 1.940000e-29 141.0
40 TraesCS7D01G099300 chr2B 91.346 104 8 1 1928 2031 242378784 242378886 1.940000e-29 141.0
41 TraesCS7D01G099300 chr1B 90.566 106 9 1 1927 2032 649336958 649337062 6.980000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G099300 chr7D 59465942 59471112 5170 False 9550.000000 9550 100.000000 1 5171 1 chr7D.!!$F1 5170
1 TraesCS7D01G099300 chr7D 14590501 14593579 3078 False 635.333333 832 82.481667 932 4198 3 chr7D.!!$F3 3266
2 TraesCS7D01G099300 chr7D 59417998 59419023 1025 False 431.000000 475 91.197000 202 839 2 chr7D.!!$F4 637
3 TraesCS7D01G099300 chr7A 63780959 63786119 5160 False 1973.250000 3921 94.093000 1 5171 4 chr7A.!!$F3 5170
4 TraesCS7D01G099300 chr7A 13832279 13835360 3081 False 631.333333 815 82.375000 932 4198 3 chr7A.!!$F2 3266
5 TraesCS7D01G099300 chr4A 722287288 722288411 1123 True 776.000000 776 79.649000 3094 4201 1 chr4A.!!$R2 1107
6 TraesCS7D01G099300 chr4A 722330439 722331455 1016 True 767.000000 767 80.464000 3102 4126 1 chr4A.!!$R3 1024
7 TraesCS7D01G099300 chr4A 722292746 722296080 3334 True 595.333333 723 82.793333 932 3093 3 chr4A.!!$R4 2161
8 TraesCS7D01G099300 chr3D 15387022 15388171 1149 True 763.000000 763 78.992000 2755 3931 1 chr3D.!!$R1 1176
9 TraesCS7D01G099300 chrUn 307991713 307992587 874 True 723.000000 723 81.849000 932 1804 1 chrUn.!!$R2 872
10 TraesCS7D01G099300 chrUn 335447913 335448787 874 True 723.000000 723 81.849000 932 1804 1 chrUn.!!$R3 872
11 TraesCS7D01G099300 chrUn 15722984 15724431 1447 False 452.000000 623 80.235500 2654 4064 2 chrUn.!!$F2 1410
12 TraesCS7D01G099300 chrUn 357011173 357012617 1444 False 436.500000 592 79.982000 2654 4064 2 chrUn.!!$F3 1410
13 TraesCS7D01G099300 chr3B 22518400 22519236 836 False 556.000000 556 78.991000 3092 3931 1 chr3B.!!$F1 839
14 TraesCS7D01G099300 chr3A 20914067 20914856 789 False 449.000000 449 77.666000 998 1761 1 chr3A.!!$F1 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 1062 0.106894 TGGCACGTGGTCACAATGTA 59.893 50.000 18.88 0.0 0.00 2.29 F
1400 1830 0.329596 GATGGCTTCCTCAACCCAGT 59.670 55.000 0.00 0.0 0.00 4.00 F
1804 2240 1.002868 CCTCCCACAGGCAAGAGTG 60.003 63.158 0.00 0.0 34.56 3.51 F
2910 4650 1.066573 AGACTCTTGGGATGTTGCTCG 60.067 52.381 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2954 0.245813 AAACGGAGGGAGTAGCGAAC 59.754 55.000 0.00 0.0 0.00 3.95 R
2285 3920 1.202915 TGAGCAACCTCCAAGCAATCA 60.203 47.619 0.00 0.0 37.29 2.57 R
3311 5098 3.123050 GCTAAATATTTTTGCCAGGCCG 58.877 45.455 9.64 0.0 0.00 6.13 R
4358 6195 0.030235 GGTCTTCGCCGCAAAGTTTT 59.970 50.000 0.00 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.788889 TCCTTTTCTTTAGTTAGAGGTTTAAGG 57.211 33.333 0.00 0.00 0.00 2.69
29 30 9.788889 CCTTTTCTTTAGTTAGAGGTTTAAGGA 57.211 33.333 0.00 0.00 0.00 3.36
56 61 0.749454 GATTCTTCCACGGCAGCCAT 60.749 55.000 13.30 0.00 0.00 4.40
175 181 6.289064 ACTATTCATTGTTCTATTCGGTCCC 58.711 40.000 0.00 0.00 0.00 4.46
192 198 0.239879 CCCGATTTTTGGTGTGGACG 59.760 55.000 0.00 0.00 0.00 4.79
227 234 4.600111 ACCTAATCTTGTAAACCCAGTCCA 59.400 41.667 0.00 0.00 0.00 4.02
229 236 5.590259 CCTAATCTTGTAAACCCAGTCCATG 59.410 44.000 0.00 0.00 0.00 3.66
234 241 5.300792 TCTTGTAAACCCAGTCCATGAAAAC 59.699 40.000 0.00 0.00 0.00 2.43
244 251 6.462207 CCCAGTCCATGAAAACAATTTGTACA 60.462 38.462 1.76 4.72 0.00 2.90
286 293 9.358872 GTGAAGAATTATTTCATCCAAGAAACC 57.641 33.333 7.81 0.00 40.03 3.27
293 300 4.577834 TTCATCCAAGAAACCGGTTTTC 57.422 40.909 32.06 23.37 43.67 2.29
324 332 0.865769 AAGAAACATGTGACGCGGAC 59.134 50.000 12.47 7.40 0.00 4.79
345 353 6.417044 CGGACGATTGAACGTTTCTAATCTAT 59.583 38.462 21.12 14.14 46.52 1.98
477 485 3.838317 GGGGGAAAGGCTAATTGAGTTTT 59.162 43.478 0.00 0.00 0.00 2.43
479 487 5.482526 GGGGGAAAGGCTAATTGAGTTTTAA 59.517 40.000 0.00 0.00 0.00 1.52
482 490 7.549134 GGGGAAAGGCTAATTGAGTTTTAATTG 59.451 37.037 0.00 0.00 0.00 2.32
490 498 9.337091 GCTAATTGAGTTTTAATTGCTAAACGA 57.663 29.630 0.00 0.00 38.83 3.85
541 939 1.153289 AGCTCCATGATCACGTGCC 60.153 57.895 11.67 5.73 0.00 5.01
546 944 0.177836 CCATGATCACGTGCCAGGTA 59.822 55.000 11.67 0.00 0.00 3.08
574 972 7.202223 CCTTTTCCCATTAATCTCCCTCTGATA 60.202 40.741 0.00 0.00 0.00 2.15
608 1006 4.518590 TCCCACTGTTTCACAATGTACATG 59.481 41.667 9.63 6.45 0.00 3.21
610 1008 5.451908 CCACTGTTTCACAATGTACATGTC 58.548 41.667 9.63 0.00 0.00 3.06
663 1061 1.153066 TGGCACGTGGTCACAATGT 60.153 52.632 18.88 0.00 0.00 2.71
664 1062 0.106894 TGGCACGTGGTCACAATGTA 59.893 50.000 18.88 0.00 0.00 2.29
705 1103 7.380870 TGTCACATAAATGAAAAACCGACATTG 59.619 33.333 0.00 0.00 35.00 2.82
706 1104 7.381139 GTCACATAAATGAAAAACCGACATTGT 59.619 33.333 0.00 0.00 35.00 2.71
707 1105 7.923344 TCACATAAATGAAAAACCGACATTGTT 59.077 29.630 0.00 0.00 35.00 2.83
773 1171 7.035840 AGAAACAATGATAAGCATGTGGATC 57.964 36.000 0.00 0.00 37.28 3.36
775 1173 7.994911 AGAAACAATGATAAGCATGTGGATCTA 59.005 33.333 0.00 0.00 37.28 1.98
885 1288 0.677731 ACAGGTGGCACCGATGATTG 60.678 55.000 29.76 22.80 44.90 2.67
912 1315 4.943705 GCTTCAAATCTATGGACTGTTGGA 59.056 41.667 0.00 0.00 0.00 3.53
944 1347 1.936658 GCAACAAGCAAGCAAAGGC 59.063 52.632 0.00 0.00 44.79 4.35
1056 1465 3.419828 CTGTCGGCAACTGCAACA 58.580 55.556 3.76 6.51 44.36 3.33
1400 1830 0.329596 GATGGCTTCCTCAACCCAGT 59.670 55.000 0.00 0.00 0.00 4.00
1745 2178 1.060122 GGCGTTTATGTTCTTCGACCG 59.940 52.381 0.00 0.00 0.00 4.79
1804 2240 1.002868 CCTCCCACAGGCAAGAGTG 60.003 63.158 0.00 0.00 34.56 3.51
1854 2290 3.610242 GTCGTTGCACAAACACAATTGAA 59.390 39.130 13.59 0.00 38.84 2.69
1855 2291 4.090642 GTCGTTGCACAAACACAATTGAAA 59.909 37.500 13.59 0.00 38.84 2.69
1856 2292 4.867047 TCGTTGCACAAACACAATTGAAAT 59.133 33.333 13.59 0.00 38.84 2.17
1857 2293 5.349817 TCGTTGCACAAACACAATTGAAATT 59.650 32.000 13.59 0.03 38.84 1.82
1889 2325 2.666272 TCATTTGCTGGTGGTGGTTA 57.334 45.000 0.00 0.00 0.00 2.85
1921 2954 6.707608 TGATTTAGTTGGCATGCTATCAGTAG 59.292 38.462 18.92 0.00 0.00 2.57
1924 2957 4.446371 AGTTGGCATGCTATCAGTAGTTC 58.554 43.478 18.92 0.00 0.00 3.01
1946 2979 3.367703 CGCTACTCCCTCCGTTTTCTAAA 60.368 47.826 0.00 0.00 0.00 1.85
2052 3643 9.577110 TTGCTTTGACAATAGATTCATTCATTC 57.423 29.630 0.00 0.00 0.00 2.67
2084 3719 4.210537 CCGTACGATAATTTGTGGATGTCC 59.789 45.833 18.76 0.00 0.00 4.02
2107 3742 3.546002 TTTTAAAGGTCATGGAACGCG 57.454 42.857 3.53 3.53 0.00 6.01
2197 3832 1.273606 TCGTTGCCTCAGAGGAAGAAG 59.726 52.381 21.89 5.14 37.67 2.85
2229 3864 7.703058 AATGGTGGGTAAATTAGTTTCTGAG 57.297 36.000 0.00 0.00 0.00 3.35
2245 3880 8.982091 AGTTTCTGAGATGCTACTATGTACTA 57.018 34.615 0.00 0.00 0.00 1.82
2246 3881 9.581289 AGTTTCTGAGATGCTACTATGTACTAT 57.419 33.333 0.00 0.00 0.00 2.12
2389 4024 5.247337 GGGTCAATTCCCAATTTTTCAGGTA 59.753 40.000 0.00 0.00 46.30 3.08
2409 4044 8.746530 TCAGGTACAAAGATACTACGAGAAAAT 58.253 33.333 0.00 0.00 0.00 1.82
2462 4097 8.010697 TCAAGAACTAGTATGGGATATGGAAGA 58.989 37.037 0.00 0.00 0.00 2.87
2465 4100 6.613153 ACTAGTATGGGATATGGAAGAAGC 57.387 41.667 0.00 0.00 0.00 3.86
2523 4161 8.950208 AGATATTGGAAGCTACAAGTAACTTC 57.050 34.615 12.64 12.64 37.47 3.01
2570 4208 5.362651 AGGAGGATTTGGCCCTGTATATAT 58.637 41.667 0.00 0.00 33.36 0.86
2704 4436 8.357290 TCCTTGTGCTCATTACTTAGTAGTTA 57.643 34.615 0.00 0.00 35.78 2.24
2910 4650 1.066573 AGACTCTTGGGATGTTGCTCG 60.067 52.381 0.00 0.00 0.00 5.03
3002 4746 8.584157 TGGTACATATTTGCATTCCCATATTTC 58.416 33.333 0.00 0.00 0.00 2.17
3569 5365 6.838401 ATTCTTGAGATCCTTAGTGGGAAT 57.162 37.500 0.00 0.00 39.02 3.01
3580 5376 5.066593 CCTTAGTGGGAATAGGAATTCTGC 58.933 45.833 5.23 0.00 41.18 4.26
3651 5451 9.730420 GTTCATAAACACCCATATAACATGAAC 57.270 33.333 0.00 7.58 41.12 3.18
3736 5537 3.437052 GGCAGTTATGGGATGAGGGAAAT 60.437 47.826 0.00 0.00 0.00 2.17
3756 5557 8.206189 GGGAAATTGGATTGATATTGTTGATGT 58.794 33.333 0.00 0.00 0.00 3.06
3783 5593 0.104934 ACTCCCAAGTCTCACCCAGT 60.105 55.000 0.00 0.00 0.00 4.00
3963 5776 3.199880 AGAGGATTCATTTGCTACCCG 57.800 47.619 0.00 0.00 0.00 5.28
3964 5777 2.158755 AGAGGATTCATTTGCTACCCGG 60.159 50.000 0.00 0.00 0.00 5.73
4253 6090 9.981460 ACTAATTCTAAAAATCAACCTCCTCAT 57.019 29.630 0.00 0.00 0.00 2.90
4307 6144 7.325694 TCTAAAAACTATTACCAACCTCCTCG 58.674 38.462 0.00 0.00 0.00 4.63
4312 6149 4.831710 ACTATTACCAACCTCCTCGGATAC 59.168 45.833 0.00 0.00 36.31 2.24
4342 6179 4.137116 AGACCCAAAAGTTTTGGCTTTC 57.863 40.909 33.28 27.14 37.68 2.62
4353 6190 7.595311 AAGTTTTGGCTTTCTTACAAACAAG 57.405 32.000 0.00 0.00 34.21 3.16
4354 6191 6.106003 AGTTTTGGCTTTCTTACAAACAAGG 58.894 36.000 0.00 0.00 34.21 3.61
4355 6192 3.726291 TGGCTTTCTTACAAACAAGGC 57.274 42.857 0.00 0.00 41.12 4.35
4356 6193 2.364002 TGGCTTTCTTACAAACAAGGCC 59.636 45.455 0.00 0.00 40.26 5.19
4357 6194 2.364002 GGCTTTCTTACAAACAAGGCCA 59.636 45.455 5.01 0.00 36.15 5.36
4358 6195 3.181470 GGCTTTCTTACAAACAAGGCCAA 60.181 43.478 5.01 0.00 36.15 4.52
4359 6196 4.438148 GCTTTCTTACAAACAAGGCCAAA 58.562 39.130 5.01 0.00 0.00 3.28
4360 6197 4.873259 GCTTTCTTACAAACAAGGCCAAAA 59.127 37.500 5.01 0.00 0.00 2.44
4361 6198 5.352846 GCTTTCTTACAAACAAGGCCAAAAA 59.647 36.000 5.01 0.00 0.00 1.94
4362 6199 6.674519 GCTTTCTTACAAACAAGGCCAAAAAC 60.675 38.462 5.01 0.00 0.00 2.43
4363 6200 5.669164 TCTTACAAACAAGGCCAAAAACT 57.331 34.783 5.01 0.00 0.00 2.66
4364 6201 6.043854 TCTTACAAACAAGGCCAAAAACTT 57.956 33.333 5.01 0.00 0.00 2.66
4365 6202 6.468543 TCTTACAAACAAGGCCAAAAACTTT 58.531 32.000 5.01 0.00 0.00 2.66
4366 6203 6.370166 TCTTACAAACAAGGCCAAAAACTTTG 59.630 34.615 5.01 0.46 0.00 2.77
4367 6204 3.190327 ACAAACAAGGCCAAAAACTTTGC 59.810 39.130 5.01 0.00 0.00 3.68
4368 6205 1.650825 ACAAGGCCAAAAACTTTGCG 58.349 45.000 5.01 0.00 0.00 4.85
4369 6206 0.936600 CAAGGCCAAAAACTTTGCGG 59.063 50.000 5.01 0.00 0.00 5.69
4370 6207 0.813610 AAGGCCAAAAACTTTGCGGC 60.814 50.000 5.01 7.16 38.28 6.53
4371 6208 2.594048 GGCCAAAAACTTTGCGGCG 61.594 57.895 0.51 0.51 39.30 6.46
4372 6209 1.590259 GCCAAAAACTTTGCGGCGA 60.590 52.632 12.98 0.00 32.19 5.54
4373 6210 1.148759 GCCAAAAACTTTGCGGCGAA 61.149 50.000 12.98 0.00 32.19 4.70
4374 6211 0.852136 CCAAAAACTTTGCGGCGAAG 59.148 50.000 24.88 24.88 0.00 3.79
4375 6212 1.535015 CCAAAAACTTTGCGGCGAAGA 60.535 47.619 31.35 0.00 0.00 2.87
4376 6213 1.516864 CAAAAACTTTGCGGCGAAGAC 59.483 47.619 31.35 0.00 0.00 3.01
4377 6214 0.030235 AAAACTTTGCGGCGAAGACC 59.970 50.000 31.35 0.00 0.00 3.85
4378 6215 1.792118 AAACTTTGCGGCGAAGACCC 61.792 55.000 31.35 0.00 0.00 4.46
4379 6216 2.668212 CTTTGCGGCGAAGACCCA 60.668 61.111 22.79 0.00 0.00 4.51
4380 6217 2.203224 TTTGCGGCGAAGACCCAA 60.203 55.556 12.98 0.17 0.00 4.12
4381 6218 1.791103 CTTTGCGGCGAAGACCCAAA 61.791 55.000 22.79 9.52 32.49 3.28
4382 6219 1.384989 TTTGCGGCGAAGACCCAAAA 61.385 50.000 12.98 0.00 31.27 2.44
4383 6220 1.791103 TTGCGGCGAAGACCCAAAAG 61.791 55.000 12.98 0.00 0.00 2.27
4384 6221 2.258726 GCGGCGAAGACCCAAAAGT 61.259 57.895 12.98 0.00 0.00 2.66
4385 6222 1.792118 GCGGCGAAGACCCAAAAGTT 61.792 55.000 12.98 0.00 0.00 2.66
4386 6223 0.666374 CGGCGAAGACCCAAAAGTTT 59.334 50.000 0.00 0.00 0.00 2.66
4387 6224 1.066454 CGGCGAAGACCCAAAAGTTTT 59.934 47.619 0.00 0.00 0.00 2.43
4388 6225 2.469826 GGCGAAGACCCAAAAGTTTTG 58.530 47.619 19.48 19.48 0.00 2.44
4389 6226 2.469826 GCGAAGACCCAAAAGTTTTGG 58.530 47.619 32.19 32.19 39.25 3.28
4390 6227 2.469826 CGAAGACCCAAAAGTTTTGGC 58.530 47.619 33.28 23.44 38.23 4.52
4391 6228 2.100749 CGAAGACCCAAAAGTTTTGGCT 59.899 45.455 33.28 24.32 38.23 4.75
4392 6229 3.430236 CGAAGACCCAAAAGTTTTGGCTT 60.430 43.478 33.28 29.84 38.23 4.35
4393 6230 4.513442 GAAGACCCAAAAGTTTTGGCTTT 58.487 39.130 33.28 25.99 40.07 3.51
4394 6231 4.137116 AGACCCAAAAGTTTTGGCTTTC 57.863 40.909 33.28 27.14 37.68 2.62
4395 6232 3.774766 AGACCCAAAAGTTTTGGCTTTCT 59.225 39.130 33.28 28.43 37.68 2.52
4396 6233 4.119862 GACCCAAAAGTTTTGGCTTTCTC 58.880 43.478 33.28 20.06 37.68 2.87
4397 6234 3.517500 ACCCAAAAGTTTTGGCTTTCTCA 59.482 39.130 33.28 0.00 37.68 3.27
4398 6235 3.871006 CCCAAAAGTTTTGGCTTTCTCAC 59.129 43.478 33.28 0.00 37.68 3.51
4399 6236 4.502962 CCAAAAGTTTTGGCTTTCTCACA 58.497 39.130 29.52 0.00 37.68 3.58
4400 6237 4.934602 CCAAAAGTTTTGGCTTTCTCACAA 59.065 37.500 29.52 0.00 37.68 3.33
4401 6238 5.411053 CCAAAAGTTTTGGCTTTCTCACAAA 59.589 36.000 29.52 0.00 37.68 2.83
4402 6239 6.306397 CAAAAGTTTTGGCTTTCTCACAAAC 58.694 36.000 18.80 0.00 37.68 2.93
4403 6240 4.799564 AGTTTTGGCTTTCTCACAAACA 57.200 36.364 0.00 0.00 34.21 2.83
4404 6241 5.146010 AGTTTTGGCTTTCTCACAAACAA 57.854 34.783 0.00 0.00 34.21 2.83
4443 6280 1.323534 CCGTGGCTAGAAATTTCGACG 59.676 52.381 12.42 14.73 0.00 5.12
4444 6281 1.266891 CGTGGCTAGAAATTTCGACGC 60.267 52.381 12.42 14.62 0.00 5.19
4445 6282 0.996462 TGGCTAGAAATTTCGACGCG 59.004 50.000 12.42 3.53 0.00 6.01
4446 6283 0.997196 GGCTAGAAATTTCGACGCGT 59.003 50.000 13.85 13.85 0.00 6.01
4447 6284 1.006287 GGCTAGAAATTTCGACGCGTC 60.006 52.381 28.96 28.96 0.00 5.19
4479 6325 4.501915 CCAAATCAACAAGAATGGTGCAGT 60.502 41.667 0.00 0.00 44.26 4.40
4480 6326 3.928727 ATCAACAAGAATGGTGCAGTG 57.071 42.857 0.00 0.00 44.26 3.66
4481 6327 2.653726 TCAACAAGAATGGTGCAGTGT 58.346 42.857 0.00 0.00 44.26 3.55
4482 6328 3.023119 TCAACAAGAATGGTGCAGTGTT 58.977 40.909 0.00 0.00 44.26 3.32
4500 6346 7.010923 TGCAGTGTTGTTCATTCCAAAATTAAC 59.989 33.333 0.00 0.00 32.14 2.01
4513 6359 6.632909 TCCAAAATTAACTCATGCAATCCAG 58.367 36.000 0.00 0.00 0.00 3.86
4545 6391 6.372659 GTCAGTCAATACACTGGATGAAACAT 59.627 38.462 0.91 0.00 43.59 2.71
4560 6406 8.168058 TGGATGAAACATTCCATATCATCATCT 58.832 33.333 14.00 0.00 45.12 2.90
4577 6423 7.356680 TCATCATCTTACCAAATCATTTCCCT 58.643 34.615 0.00 0.00 0.00 4.20
4582 6428 6.310941 TCTTACCAAATCATTTCCCTGACAA 58.689 36.000 0.00 0.00 0.00 3.18
4618 6464 6.819397 GCCTAGGGCTAAAACTATAAATGG 57.181 41.667 11.72 0.00 46.69 3.16
4619 6465 6.540083 GCCTAGGGCTAAAACTATAAATGGA 58.460 40.000 11.72 0.00 46.69 3.41
4654 6500 6.797033 CGCTAATGAACACTACCTTGAAAAAG 59.203 38.462 0.00 0.00 0.00 2.27
4775 6622 4.525949 GAGGGAACTACGGCGGGC 62.526 72.222 13.24 0.00 44.43 6.13
4777 6624 4.397832 GGGAACTACGGCGGGCAA 62.398 66.667 13.24 0.00 0.00 4.52
4778 6625 2.818274 GGAACTACGGCGGGCAAG 60.818 66.667 13.24 5.54 0.00 4.01
4779 6626 2.818274 GAACTACGGCGGGCAAGG 60.818 66.667 13.24 0.00 0.00 3.61
4782 6629 3.845259 CTACGGCGGGCAAGGCTA 61.845 66.667 13.24 0.00 34.19 3.93
4783 6630 3.792053 CTACGGCGGGCAAGGCTAG 62.792 68.421 13.24 0.00 34.19 3.42
4878 6725 4.542697 ACTTCAATTTAACACCACCACCT 58.457 39.130 0.00 0.00 0.00 4.00
4927 6774 3.088194 TGGGCGATTAGTTGATACGAC 57.912 47.619 0.00 0.00 0.00 4.34
4939 6786 6.085555 AGTTGATACGACAAACAAGAGAGA 57.914 37.500 0.00 0.00 0.00 3.10
4950 6797 8.936864 CGACAAACAAGAGAGATTACCTAAATT 58.063 33.333 0.00 0.00 0.00 1.82
4954 6801 8.943909 AACAAGAGAGATTACCTAAATTACCG 57.056 34.615 0.00 0.00 0.00 4.02
4993 6840 1.002430 TGGAGCAGAACAGGATGACAC 59.998 52.381 0.00 0.00 39.69 3.67
5025 6872 0.038801 GCTCCGATGATGCGAGATGA 60.039 55.000 0.00 0.00 0.00 2.92
5054 6901 3.834489 ACAAAGCGAGATGATCTGGAT 57.166 42.857 8.72 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.788889 TCCTTAAACCTCTAACTAAAGAAAAGG 57.211 33.333 0.00 0.00 0.00 3.11
32 33 2.094545 GCTGCCGTGGAAGAATCATTTT 60.095 45.455 0.00 0.00 0.00 1.82
36 37 1.377202 GGCTGCCGTGGAAGAATCA 60.377 57.895 1.35 0.00 0.00 2.57
175 181 0.386731 GGCGTCCACACCAAAAATCG 60.387 55.000 0.00 0.00 0.00 3.34
183 189 1.303317 AATTCAGGGCGTCCACACC 60.303 57.895 9.71 0.00 34.83 4.16
192 198 3.584733 AGATTAGGTGGAATTCAGGGC 57.415 47.619 7.93 0.00 0.00 5.19
227 234 8.659925 TGCTTCATTGTACAAATTGTTTTCAT 57.340 26.923 13.23 0.00 0.00 2.57
234 241 7.201342 CGGTGTAATGCTTCATTGTACAAATTG 60.201 37.037 13.23 7.63 35.54 2.32
244 251 4.323417 TCTTCACGGTGTAATGCTTCATT 58.677 39.130 8.17 0.00 37.80 2.57
286 293 3.007614 TCTTGGACTTCCCTAGAAAACCG 59.992 47.826 0.00 0.00 42.48 4.44
293 300 4.697352 CACATGTTTCTTGGACTTCCCTAG 59.303 45.833 0.00 0.00 38.85 3.02
324 332 7.694388 TCCATAGATTAGAAACGTTCAATCG 57.306 36.000 17.48 8.98 34.90 3.34
345 353 3.361786 TCAGTATCAGTCCGACAATCCA 58.638 45.455 0.40 0.00 0.00 3.41
477 485 8.391859 TCGCATAAGAAAATCGTTTAGCAATTA 58.608 29.630 0.00 0.00 0.00 1.40
479 487 6.781138 TCGCATAAGAAAATCGTTTAGCAAT 58.219 32.000 0.00 0.00 0.00 3.56
482 490 7.487180 TTTTCGCATAAGAAAATCGTTTAGC 57.513 32.000 1.32 0.00 42.91 3.09
541 939 6.717084 GGAGATTAATGGGAAAAGGATACCTG 59.283 42.308 0.00 0.00 32.13 4.00
546 944 5.678672 AGAGGGAGATTAATGGGAAAAGGAT 59.321 40.000 0.00 0.00 0.00 3.24
574 972 1.056660 ACAGTGGGAAGGACGTGAAT 58.943 50.000 0.00 0.00 0.00 2.57
638 1036 0.106894 TGACCACGTGCCACATGTAA 59.893 50.000 10.91 0.00 31.85 2.41
639 1037 0.601576 GTGACCACGTGCCACATGTA 60.602 55.000 24.80 0.50 31.85 2.29
644 1042 1.282570 CATTGTGACCACGTGCCAC 59.717 57.895 23.70 23.70 0.00 5.01
725 1123 9.334947 TCTTTCTGGAGTCATCAAAATGATATC 57.665 33.333 0.00 0.00 43.62 1.63
742 1140 7.177216 ACATGCTTATCATTGTTTCTTTCTGGA 59.823 33.333 0.00 0.00 31.79 3.86
773 1171 3.305094 CCGCGTGTAGGTGTTTTGTATAG 59.695 47.826 4.92 0.00 0.00 1.31
775 1173 2.070783 CCGCGTGTAGGTGTTTTGTAT 58.929 47.619 4.92 0.00 0.00 2.29
885 1288 3.557595 CAGTCCATAGATTTGAAGCCGTC 59.442 47.826 0.00 0.00 0.00 4.79
912 1315 1.882912 TGTTGCTTTCAGCGATCAGT 58.117 45.000 0.00 0.00 46.26 3.41
941 1344 3.439857 TTCTGCTTGTCCTAATTGCCT 57.560 42.857 0.00 0.00 0.00 4.75
943 1346 4.094887 TCGATTTCTGCTTGTCCTAATTGC 59.905 41.667 0.00 0.00 0.00 3.56
944 1347 5.728898 GCTCGATTTCTGCTTGTCCTAATTG 60.729 44.000 0.00 0.00 0.00 2.32
986 1392 0.250209 CAGCATGCTAGCTACCCCAG 60.250 60.000 22.19 0.00 44.54 4.45
988 1394 1.072159 CCAGCATGCTAGCTACCCC 59.928 63.158 22.19 0.00 44.54 4.95
989 1395 1.072159 CCCAGCATGCTAGCTACCC 59.928 63.158 22.19 1.79 44.54 3.69
1400 1830 4.631740 TCCCGGTGAGACTGGCCA 62.632 66.667 4.71 4.71 43.40 5.36
1804 2240 2.297701 TGGAGACAGAAACCAAAGTGC 58.702 47.619 0.00 0.00 35.01 4.40
1854 2290 9.218440 CCAGCAAATGAATTTGTAACCTTAATT 57.782 29.630 15.27 0.00 46.63 1.40
1855 2291 8.374743 ACCAGCAAATGAATTTGTAACCTTAAT 58.625 29.630 15.27 0.00 46.63 1.40
1856 2292 7.655328 CACCAGCAAATGAATTTGTAACCTTAA 59.345 33.333 15.27 0.00 46.63 1.85
1857 2293 7.151308 CACCAGCAAATGAATTTGTAACCTTA 58.849 34.615 15.27 0.00 46.63 2.69
1889 2325 5.186409 AGCATGCCAACTAAATCAAGATTGT 59.814 36.000 15.66 0.00 0.00 2.71
1921 2954 0.245813 AAACGGAGGGAGTAGCGAAC 59.754 55.000 0.00 0.00 0.00 3.95
1924 2957 0.531200 AGAAAACGGAGGGAGTAGCG 59.469 55.000 0.00 0.00 0.00 4.26
2052 3643 6.194508 CACAAATTATCGTACGGAGCAAAATG 59.805 38.462 16.52 8.13 0.00 2.32
2084 3719 4.323336 CGCGTTCCATGACCTTTAAAATTG 59.677 41.667 0.00 0.00 0.00 2.32
2107 3742 4.218417 CACATATAGCAATTACCCAAGGCC 59.782 45.833 0.00 0.00 0.00 5.19
2197 3832 7.446769 ACTAATTTACCCACCATTTTTGTTCC 58.553 34.615 0.00 0.00 0.00 3.62
2285 3920 1.202915 TGAGCAACCTCCAAGCAATCA 60.203 47.619 0.00 0.00 37.29 2.57
2409 4044 4.748102 CCTTCTTGCAACTTGTAACTACGA 59.252 41.667 0.00 0.00 0.00 3.43
2465 4100 8.647143 ATCAAAAATTGTAAAGCCGGATAATG 57.353 30.769 5.05 0.00 0.00 1.90
2523 4161 7.361286 CCTTCTCCAAGTTTATTTTCTTCGGAG 60.361 40.741 0.00 0.00 38.60 4.63
2697 4429 8.574251 TGGTGCACAATTAATTCATAACTACT 57.426 30.769 20.43 0.00 0.00 2.57
3311 5098 3.123050 GCTAAATATTTTTGCCAGGCCG 58.877 45.455 9.64 0.00 0.00 6.13
3569 5365 5.163163 ACATTGATGGCTAGCAGAATTCCTA 60.163 40.000 18.24 0.00 0.00 2.94
3580 5376 3.287867 AACCTCCACATTGATGGCTAG 57.712 47.619 0.00 0.00 39.85 3.42
3736 5537 7.700022 TGACACATCAACAATATCAATCCAA 57.300 32.000 0.00 0.00 0.00 3.53
3806 5616 3.128764 TCTTGCACACATAGTAGTCCGAG 59.871 47.826 0.00 0.00 0.00 4.63
3937 5747 5.824624 GGTAGCAAATGAATCCTCTTCATCA 59.175 40.000 1.27 0.00 38.11 3.07
3963 5776 6.929606 GGTCATATCATTAACACTGTAGGACC 59.070 42.308 0.00 0.00 32.77 4.46
3964 5777 7.497595 TGGTCATATCATTAACACTGTAGGAC 58.502 38.462 0.00 0.00 0.00 3.85
4149 5980 5.888724 TGGTTTTGATTGACTACTTCCACAA 59.111 36.000 0.00 0.00 0.00 3.33
4296 6133 0.102481 CACGTATCCGAGGAGGTTGG 59.898 60.000 0.00 0.00 41.99 3.77
4307 6144 3.536956 TGGGTCTTGATTCACGTATCC 57.463 47.619 0.00 0.00 0.00 2.59
4312 6149 4.568152 AACTTTTGGGTCTTGATTCACG 57.432 40.909 0.00 0.00 0.00 4.35
4342 6179 6.541969 CAAAGTTTTTGGCCTTGTTTGTAAG 58.458 36.000 3.32 0.00 0.00 2.34
4353 6190 2.594048 CGCCGCAAAGTTTTTGGCC 61.594 57.895 17.89 0.00 42.76 5.36
4354 6191 1.148759 TTCGCCGCAAAGTTTTTGGC 61.149 50.000 15.04 15.04 42.29 4.52
4355 6192 0.852136 CTTCGCCGCAAAGTTTTTGG 59.148 50.000 3.97 0.00 0.00 3.28
4356 6193 1.516864 GTCTTCGCCGCAAAGTTTTTG 59.483 47.619 0.00 0.00 0.00 2.44
4357 6194 1.535226 GGTCTTCGCCGCAAAGTTTTT 60.535 47.619 0.00 0.00 0.00 1.94
4358 6195 0.030235 GGTCTTCGCCGCAAAGTTTT 59.970 50.000 0.00 0.00 0.00 2.43
4359 6196 1.652563 GGTCTTCGCCGCAAAGTTT 59.347 52.632 0.00 0.00 0.00 2.66
4360 6197 2.258726 GGGTCTTCGCCGCAAAGTT 61.259 57.895 0.00 0.00 0.00 2.66
4361 6198 2.668550 GGGTCTTCGCCGCAAAGT 60.669 61.111 0.00 0.00 0.00 2.66
4362 6199 1.791103 TTTGGGTCTTCGCCGCAAAG 61.791 55.000 0.00 0.00 30.69 2.77
4363 6200 1.384989 TTTTGGGTCTTCGCCGCAAA 61.385 50.000 0.00 0.00 31.59 3.68
4364 6201 1.791103 CTTTTGGGTCTTCGCCGCAA 61.791 55.000 0.00 0.00 0.00 4.85
4365 6202 2.203224 TTTTGGGTCTTCGCCGCA 60.203 55.556 0.00 0.00 0.00 5.69
4366 6203 1.792118 AACTTTTGGGTCTTCGCCGC 61.792 55.000 0.00 0.00 0.00 6.53
4367 6204 0.666374 AAACTTTTGGGTCTTCGCCG 59.334 50.000 0.00 0.00 0.00 6.46
4368 6205 2.469826 CAAAACTTTTGGGTCTTCGCC 58.530 47.619 6.37 0.00 0.00 5.54
4369 6206 2.469826 CCAAAACTTTTGGGTCTTCGC 58.530 47.619 21.44 0.00 35.96 4.70
4370 6207 2.100749 AGCCAAAACTTTTGGGTCTTCG 59.899 45.455 25.79 6.21 46.27 3.79
4371 6208 3.819564 AGCCAAAACTTTTGGGTCTTC 57.180 42.857 25.79 13.57 46.27 2.87
4376 6213 3.871006 GTGAGAAAGCCAAAACTTTTGGG 59.129 43.478 27.42 10.98 39.93 4.12
4377 6214 4.502962 TGTGAGAAAGCCAAAACTTTTGG 58.497 39.130 23.91 23.91 39.93 3.28
4378 6215 6.073331 TGTTTGTGAGAAAGCCAAAACTTTTG 60.073 34.615 7.21 7.21 39.93 2.44
4379 6216 5.994668 TGTTTGTGAGAAAGCCAAAACTTTT 59.005 32.000 0.00 0.00 39.93 2.27
4380 6217 5.546526 TGTTTGTGAGAAAGCCAAAACTTT 58.453 33.333 0.00 0.00 42.49 2.66
4381 6218 5.146010 TGTTTGTGAGAAAGCCAAAACTT 57.854 34.783 0.00 0.00 30.57 2.66
4382 6219 4.799564 TGTTTGTGAGAAAGCCAAAACT 57.200 36.364 0.00 0.00 30.57 2.66
4383 6220 4.329801 CCTTGTTTGTGAGAAAGCCAAAAC 59.670 41.667 0.00 0.00 30.57 2.43
4384 6221 4.502962 CCTTGTTTGTGAGAAAGCCAAAA 58.497 39.130 0.00 0.00 30.57 2.44
4385 6222 3.678529 GCCTTGTTTGTGAGAAAGCCAAA 60.679 43.478 0.00 0.00 0.00 3.28
4386 6223 2.159114 GCCTTGTTTGTGAGAAAGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
4387 6224 1.408702 GCCTTGTTTGTGAGAAAGCCA 59.591 47.619 0.00 0.00 0.00 4.75
4388 6225 1.269778 GGCCTTGTTTGTGAGAAAGCC 60.270 52.381 0.00 0.00 0.00 4.35
4389 6226 1.408702 TGGCCTTGTTTGTGAGAAAGC 59.591 47.619 3.32 0.00 0.00 3.51
4390 6227 3.799281 TTGGCCTTGTTTGTGAGAAAG 57.201 42.857 3.32 0.00 0.00 2.62
4391 6228 4.543590 TTTTGGCCTTGTTTGTGAGAAA 57.456 36.364 3.32 0.00 0.00 2.52
4392 6229 4.751767 ATTTTGGCCTTGTTTGTGAGAA 57.248 36.364 3.32 0.00 0.00 2.87
4393 6230 4.751767 AATTTTGGCCTTGTTTGTGAGA 57.248 36.364 3.32 0.00 0.00 3.27
4394 6231 4.035441 CCAAATTTTGGCCTTGTTTGTGAG 59.965 41.667 14.96 0.00 45.17 3.51
4395 6232 3.944015 CCAAATTTTGGCCTTGTTTGTGA 59.056 39.130 14.96 0.00 45.17 3.58
4396 6233 4.290104 CCAAATTTTGGCCTTGTTTGTG 57.710 40.909 14.96 1.86 45.17 3.33
4423 6260 1.323534 CGTCGAAATTTCTAGCCACGG 59.676 52.381 15.92 0.00 0.00 4.94
4426 6263 0.996462 CGCGTCGAAATTTCTAGCCA 59.004 50.000 15.92 0.00 0.00 4.75
4443 6280 3.740044 TGATTTGGATTCTTTCGACGC 57.260 42.857 0.00 0.00 0.00 5.19
4444 6281 5.029650 TGTTGATTTGGATTCTTTCGACG 57.970 39.130 0.00 0.00 0.00 5.12
4445 6282 6.668323 TCTTGTTGATTTGGATTCTTTCGAC 58.332 36.000 0.00 0.00 0.00 4.20
4446 6283 6.875948 TCTTGTTGATTTGGATTCTTTCGA 57.124 33.333 0.00 0.00 0.00 3.71
4447 6284 7.062605 CCATTCTTGTTGATTTGGATTCTTTCG 59.937 37.037 0.00 0.00 32.91 3.46
4448 6285 7.874528 ACCATTCTTGTTGATTTGGATTCTTTC 59.125 33.333 0.00 0.00 34.37 2.62
4479 6325 9.258826 CATGAGTTAATTTTGGAATGAACAACA 57.741 29.630 0.00 3.34 38.56 3.33
4480 6326 8.223100 GCATGAGTTAATTTTGGAATGAACAAC 58.777 33.333 0.00 0.00 38.56 3.32
4481 6327 7.930325 TGCATGAGTTAATTTTGGAATGAACAA 59.070 29.630 0.00 0.00 38.56 2.83
4482 6328 7.440198 TGCATGAGTTAATTTTGGAATGAACA 58.560 30.769 0.00 0.00 38.56 3.18
4500 6346 2.876581 TGCACCTGGATTGCATGAG 58.123 52.632 7.81 0.00 45.06 2.90
4513 6359 3.187227 CAGTGTATTGACTGACTTGCACC 59.813 47.826 0.00 0.00 45.39 5.01
4560 6406 5.835819 TGTTGTCAGGGAAATGATTTGGTAA 59.164 36.000 0.00 0.00 0.00 2.85
4563 6409 4.559153 GTGTTGTCAGGGAAATGATTTGG 58.441 43.478 0.00 0.00 0.00 3.28
4577 6423 1.092921 GCTTCGTGGTGGTGTTGTCA 61.093 55.000 0.00 0.00 0.00 3.58
4582 6428 1.671742 CTAGGCTTCGTGGTGGTGT 59.328 57.895 0.00 0.00 0.00 4.16
4616 6462 9.772973 AGTGTTCATTAGCGTTATTTATATCCA 57.227 29.630 0.00 0.00 0.00 3.41
4749 6596 4.334481 CGCCGTAGTTCCCTCAAATAAAAT 59.666 41.667 0.00 0.00 0.00 1.82
4751 6598 3.264104 CGCCGTAGTTCCCTCAAATAAA 58.736 45.455 0.00 0.00 0.00 1.40
4752 6599 2.419021 CCGCCGTAGTTCCCTCAAATAA 60.419 50.000 0.00 0.00 0.00 1.40
4753 6600 1.137479 CCGCCGTAGTTCCCTCAAATA 59.863 52.381 0.00 0.00 0.00 1.40
4754 6601 0.107848 CCGCCGTAGTTCCCTCAAAT 60.108 55.000 0.00 0.00 0.00 2.32
4775 6622 2.706339 ATGAGTTCAGGCTAGCCTTG 57.294 50.000 34.20 26.28 45.70 3.61
4776 6623 3.728385 AAATGAGTTCAGGCTAGCCTT 57.272 42.857 34.20 19.92 45.70 4.35
4777 6624 7.857018 ATCAATAAAATGAGTTCAGGCTAGCCT 60.857 37.037 31.30 31.30 38.83 4.58
4778 6625 5.590259 TCAATAAAATGAGTTCAGGCTAGCC 59.410 40.000 27.19 27.19 0.00 3.93
4779 6626 6.683974 TCAATAAAATGAGTTCAGGCTAGC 57.316 37.500 6.04 6.04 0.00 3.42
4782 6629 9.211485 CAAAAATCAATAAAATGAGTTCAGGCT 57.789 29.630 0.00 0.00 36.68 4.58
4783 6630 8.992073 ACAAAAATCAATAAAATGAGTTCAGGC 58.008 29.630 0.00 0.00 36.68 4.85
4834 6681 9.271828 GAAGTCAATTTCTCTTTCTCTCTTTCT 57.728 33.333 0.00 0.00 0.00 2.52
4878 6725 4.576053 CCTTTGTATGAGCCGAATCAATGA 59.424 41.667 0.00 0.00 31.76 2.57
4939 6786 7.571025 ACTGGTTGATCGGTAATTTAGGTAAT 58.429 34.615 0.00 0.00 0.00 1.89
4950 6797 0.528924 CCGTGACTGGTTGATCGGTA 59.471 55.000 0.00 0.00 34.38 4.02
4954 6801 2.544685 CATCTCCGTGACTGGTTGATC 58.455 52.381 0.00 0.00 0.00 2.92
5025 6872 4.832248 TCATCTCGCTTTGTATCTTGGTT 58.168 39.130 0.00 0.00 0.00 3.67
5069 6916 3.735029 GCTCGACAGACCGGACGT 61.735 66.667 9.46 4.57 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.