Multiple sequence alignment - TraesCS7D01G097800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G097800 chr7D 100.000 4598 0 0 1 4598 58872555 58867958 0.000000e+00 8492.0
1 TraesCS7D01G097800 chr7D 82.432 370 46 10 1788 2140 45035586 45035953 5.780000e-79 305.0
2 TraesCS7D01G097800 chr4A 93.598 1937 93 9 882 2805 675970155 675968237 0.000000e+00 2861.0
3 TraesCS7D01G097800 chr4A 89.897 970 75 15 3642 4598 675967381 675966422 0.000000e+00 1227.0
4 TraesCS7D01G097800 chr4A 92.770 816 51 5 2803 3617 675968177 675967369 0.000000e+00 1173.0
5 TraesCS7D01G097800 chr4A 86.026 229 27 4 58 286 675972719 675972496 1.650000e-59 241.0
6 TraesCS7D01G097800 chr7A 93.483 1872 83 18 945 2805 63446368 63444525 0.000000e+00 2745.0
7 TraesCS7D01G097800 chr7A 93.711 811 46 4 2803 3612 63444448 63443642 0.000000e+00 1210.0
8 TraesCS7D01G097800 chr7A 88.947 959 54 21 3645 4598 63443644 63442733 0.000000e+00 1136.0
9 TraesCS7D01G097800 chr7A 86.989 661 66 9 45 698 63447064 63446417 0.000000e+00 726.0
10 TraesCS7D01G097800 chr7A 81.892 370 48 10 1788 2140 47401697 47402064 1.250000e-75 294.0
11 TraesCS7D01G097800 chr5A 80.531 113 11 7 368 474 359035725 359035618 4.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G097800 chr7D 58867958 58872555 4597 True 8492.00 8492 100.00000 1 4598 1 chr7D.!!$R1 4597
1 TraesCS7D01G097800 chr4A 675966422 675972719 6297 True 1375.50 2861 90.57275 58 4598 4 chr4A.!!$R1 4540
2 TraesCS7D01G097800 chr7A 63442733 63447064 4331 True 1454.25 2745 90.78250 45 4598 4 chr7A.!!$R1 4553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 844 0.099968 TAACCGATCGCCTCGTCAAG 59.900 55.0 10.32 0.0 46.18 3.02 F
1448 3467 0.108756 GACACCGTCTCCTTGGTAGC 60.109 60.0 0.00 0.0 36.50 3.58 F
1585 3615 0.689055 TGCCACTCACTGCAGATCTT 59.311 50.0 23.35 0.0 32.77 2.40 F
3328 5449 0.792640 GCATCATCTTATCGCACCCG 59.207 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 3486 0.034960 TGACCGAGAGAGTGAGGAGG 60.035 60.0 0.00 0.00 0.00 4.30 R
2944 5065 0.890542 TCTGTGCACATCAACCTGCC 60.891 55.0 22.00 0.00 31.97 4.85 R
3576 5697 0.179240 GCAGTGACTGAAATGACGCG 60.179 55.0 18.18 3.53 32.44 6.01 R
4541 6686 0.398522 ACCCGGAGCTCATGGACATA 60.399 55.0 23.32 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.760131 TTTAGTAAATGGTAGGTTCGATTCG 57.240 36.000 0.00 0.00 0.00 3.34
37 38 5.587388 AGTAAATGGTAGGTTCGATTCGA 57.413 39.130 4.29 4.29 0.00 3.71
38 39 5.589192 AGTAAATGGTAGGTTCGATTCGAG 58.411 41.667 8.98 0.00 37.14 4.04
39 40 4.730949 AAATGGTAGGTTCGATTCGAGA 57.269 40.909 8.98 0.00 37.14 4.04
40 41 3.992260 ATGGTAGGTTCGATTCGAGAG 57.008 47.619 8.98 0.00 37.14 3.20
41 42 2.995283 TGGTAGGTTCGATTCGAGAGA 58.005 47.619 8.98 0.00 37.14 3.10
42 43 2.943690 TGGTAGGTTCGATTCGAGAGAG 59.056 50.000 8.98 0.00 43.69 3.20
43 44 3.204526 GGTAGGTTCGATTCGAGAGAGA 58.795 50.000 8.98 0.00 43.69 3.10
44 45 3.626670 GGTAGGTTCGATTCGAGAGAGAA 59.373 47.826 8.98 0.00 43.69 2.87
45 46 4.096081 GGTAGGTTCGATTCGAGAGAGAAA 59.904 45.833 8.98 0.00 43.69 2.52
46 47 4.785511 AGGTTCGATTCGAGAGAGAAAA 57.214 40.909 8.98 0.00 43.69 2.29
47 48 5.331876 AGGTTCGATTCGAGAGAGAAAAT 57.668 39.130 8.98 0.00 43.69 1.82
52 53 6.203808 TCGATTCGAGAGAGAAAATGGTAA 57.796 37.500 4.29 0.00 43.69 2.85
107 108 9.932207 TTTGTATTCCTTCGAAAACTATACTCA 57.068 29.630 0.00 0.00 0.00 3.41
114 115 7.327761 TCCTTCGAAAACTATACTCACGAAAAG 59.672 37.037 0.00 0.00 37.71 2.27
120 121 7.417496 AAACTATACTCACGAAAAGGAACAC 57.583 36.000 0.00 0.00 0.00 3.32
157 158 8.503486 GCAATGTGCATTCTATTTCTTCTATG 57.497 34.615 0.00 0.00 44.26 2.23
213 214 5.590530 TTCTCAGATAGAAGTCTTGCCTC 57.409 43.478 0.00 0.00 39.36 4.70
224 225 4.810191 AGTCTTGCCTCGAAGAATACTT 57.190 40.909 0.00 0.00 39.24 2.24
276 277 3.973206 TCTTAAATGAGGCGGAAGACA 57.027 42.857 0.00 0.00 46.78 3.41
289 290 2.096496 CGGAAGACATGCCTGTTTCATC 59.904 50.000 14.14 4.97 35.14 2.92
294 295 6.127647 GGAAGACATGCCTGTTTCATCAATTA 60.128 38.462 14.14 0.00 35.14 1.40
299 300 7.669427 ACATGCCTGTTTCATCAATTAAGAAA 58.331 30.769 0.00 0.00 28.70 2.52
301 302 6.690530 TGCCTGTTTCATCAATTAAGAAAGG 58.309 36.000 0.00 0.00 32.48 3.11
373 374 3.826157 ACACACATTACAAGGAACATGGG 59.174 43.478 0.00 0.00 0.00 4.00
374 375 2.825532 ACACATTACAAGGAACATGGGC 59.174 45.455 0.00 0.00 0.00 5.36
465 830 2.223021 CCGCAAGTGTCATTCATAACCG 60.223 50.000 0.00 0.00 0.00 4.44
475 840 0.742505 TTCATAACCGATCGCCTCGT 59.257 50.000 10.32 0.00 46.18 4.18
479 844 0.099968 TAACCGATCGCCTCGTCAAG 59.900 55.000 10.32 0.00 46.18 3.02
508 873 2.485479 CCCGGGATGGACAAGACATAAG 60.485 54.545 18.48 0.00 42.00 1.73
513 878 5.602628 GGGATGGACAAGACATAAGACTAC 58.397 45.833 0.00 0.00 0.00 2.73
518 883 5.067413 TGGACAAGACATAAGACTACCGATC 59.933 44.000 0.00 0.00 0.00 3.69
533 898 3.031013 ACCGATCATGTCATAGACACCA 58.969 45.455 1.43 0.00 45.65 4.17
570 935 3.121227 CGACGAATGATGACGATCCATTG 60.121 47.826 0.00 0.00 0.00 2.82
571 936 3.133691 ACGAATGATGACGATCCATTGG 58.866 45.455 0.00 0.00 0.00 3.16
592 957 2.511900 GGGTCGGGTTTGTCCACA 59.488 61.111 0.00 0.00 38.11 4.17
626 996 2.542907 GGCGGCGAACATACCCATG 61.543 63.158 12.98 0.00 38.21 3.66
627 997 2.542907 GCGGCGAACATACCCATGG 61.543 63.158 12.98 4.14 36.39 3.66
633 1003 2.097466 GCGAACATACCCATGGTTTCTG 59.903 50.000 11.73 5.21 37.09 3.02
639 1009 5.332743 ACATACCCATGGTTTCTGTTTGAT 58.667 37.500 11.73 0.00 37.09 2.57
640 1010 5.418840 ACATACCCATGGTTTCTGTTTGATC 59.581 40.000 11.73 0.00 37.09 2.92
644 1014 4.379813 CCCATGGTTTCTGTTTGATCGAAG 60.380 45.833 11.73 0.00 0.00 3.79
646 1016 5.385617 CATGGTTTCTGTTTGATCGAAGAC 58.614 41.667 0.00 0.00 42.51 3.01
681 1051 4.634012 ATACCACTTACAAGCCAAGTCA 57.366 40.909 0.00 0.00 33.99 3.41
691 1061 7.885399 ACTTACAAGCCAAGTCAATTCTATTCT 59.115 33.333 0.00 0.00 30.36 2.40
694 1064 4.592942 AGCCAAGTCAATTCTATTCTGCA 58.407 39.130 0.00 0.00 0.00 4.41
697 1067 6.154021 AGCCAAGTCAATTCTATTCTGCATTT 59.846 34.615 0.00 0.00 0.00 2.32
698 1068 6.815142 GCCAAGTCAATTCTATTCTGCATTTT 59.185 34.615 0.00 0.00 0.00 1.82
699 1069 7.332678 GCCAAGTCAATTCTATTCTGCATTTTT 59.667 33.333 0.00 0.00 0.00 1.94
717 1087 3.374042 TTTTGACAAACCACTCCTCCA 57.626 42.857 0.00 0.00 0.00 3.86
718 1088 3.593442 TTTGACAAACCACTCCTCCAT 57.407 42.857 0.00 0.00 0.00 3.41
719 1089 3.593442 TTGACAAACCACTCCTCCATT 57.407 42.857 0.00 0.00 0.00 3.16
720 1090 4.715534 TTGACAAACCACTCCTCCATTA 57.284 40.909 0.00 0.00 0.00 1.90
721 1091 4.927267 TGACAAACCACTCCTCCATTAT 57.073 40.909 0.00 0.00 0.00 1.28
722 1092 5.255397 TGACAAACCACTCCTCCATTATT 57.745 39.130 0.00 0.00 0.00 1.40
723 1093 5.253330 TGACAAACCACTCCTCCATTATTC 58.747 41.667 0.00 0.00 0.00 1.75
724 1094 5.222027 TGACAAACCACTCCTCCATTATTCA 60.222 40.000 0.00 0.00 0.00 2.57
725 1095 5.831103 ACAAACCACTCCTCCATTATTCAT 58.169 37.500 0.00 0.00 0.00 2.57
726 1096 6.256053 ACAAACCACTCCTCCATTATTCATT 58.744 36.000 0.00 0.00 0.00 2.57
727 1097 6.378280 ACAAACCACTCCTCCATTATTCATTC 59.622 38.462 0.00 0.00 0.00 2.67
728 1098 4.708177 ACCACTCCTCCATTATTCATTCG 58.292 43.478 0.00 0.00 0.00 3.34
729 1099 3.499918 CCACTCCTCCATTATTCATTCGC 59.500 47.826 0.00 0.00 0.00 4.70
730 1100 4.129380 CACTCCTCCATTATTCATTCGCA 58.871 43.478 0.00 0.00 0.00 5.10
731 1101 4.576053 CACTCCTCCATTATTCATTCGCAA 59.424 41.667 0.00 0.00 0.00 4.85
732 1102 5.066375 CACTCCTCCATTATTCATTCGCAAA 59.934 40.000 0.00 0.00 0.00 3.68
733 1103 5.652014 ACTCCTCCATTATTCATTCGCAAAA 59.348 36.000 0.00 0.00 0.00 2.44
734 1104 6.152661 ACTCCTCCATTATTCATTCGCAAAAA 59.847 34.615 0.00 0.00 0.00 1.94
735 1105 6.329496 TCCTCCATTATTCATTCGCAAAAAC 58.671 36.000 0.00 0.00 0.00 2.43
736 1106 5.519927 CCTCCATTATTCATTCGCAAAAACC 59.480 40.000 0.00 0.00 0.00 3.27
737 1107 5.098893 TCCATTATTCATTCGCAAAAACCG 58.901 37.500 0.00 0.00 0.00 4.44
738 1108 4.862018 CCATTATTCATTCGCAAAAACCGT 59.138 37.500 0.00 0.00 0.00 4.83
739 1109 5.347364 CCATTATTCATTCGCAAAAACCGTT 59.653 36.000 0.00 0.00 0.00 4.44
740 1110 5.814314 TTATTCATTCGCAAAAACCGTTG 57.186 34.783 0.00 0.00 0.00 4.10
751 1121 5.896922 CAAAAACCGTTGCATCATTTACA 57.103 34.783 0.00 0.00 0.00 2.41
752 1122 6.279227 CAAAAACCGTTGCATCATTTACAA 57.721 33.333 0.00 0.00 0.00 2.41
753 1123 6.709643 CAAAAACCGTTGCATCATTTACAAA 58.290 32.000 0.00 0.00 0.00 2.83
754 1124 7.351223 CAAAAACCGTTGCATCATTTACAAAT 58.649 30.769 0.00 0.00 0.00 2.32
755 1125 8.491152 CAAAAACCGTTGCATCATTTACAAATA 58.509 29.630 0.00 0.00 0.00 1.40
756 1126 8.770438 AAAACCGTTGCATCATTTACAAATAT 57.230 26.923 0.00 0.00 0.00 1.28
757 1127 7.754069 AACCGTTGCATCATTTACAAATATG 57.246 32.000 0.00 0.00 0.00 1.78
758 1128 7.094508 ACCGTTGCATCATTTACAAATATGA 57.905 32.000 0.00 0.00 35.43 2.15
759 1129 7.542890 ACCGTTGCATCATTTACAAATATGAA 58.457 30.769 0.00 0.00 34.69 2.57
760 1130 7.487829 ACCGTTGCATCATTTACAAATATGAAC 59.512 33.333 0.00 0.00 34.69 3.18
761 1131 7.487509 CCGTTGCATCATTTACAAATATGAACA 59.512 33.333 0.00 0.00 34.69 3.18
762 1132 8.313227 CGTTGCATCATTTACAAATATGAACAC 58.687 33.333 0.00 0.00 34.69 3.32
763 1133 8.594687 GTTGCATCATTTACAAATATGAACACC 58.405 33.333 0.00 0.00 34.69 4.16
764 1134 7.834803 TGCATCATTTACAAATATGAACACCA 58.165 30.769 0.00 0.00 34.69 4.17
765 1135 7.758980 TGCATCATTTACAAATATGAACACCAC 59.241 33.333 0.00 0.00 34.69 4.16
766 1136 7.222611 GCATCATTTACAAATATGAACACCACC 59.777 37.037 0.00 0.00 34.69 4.61
767 1137 6.847400 TCATTTACAAATATGAACACCACCG 58.153 36.000 0.00 0.00 0.00 4.94
768 1138 4.688511 TTACAAATATGAACACCACCGC 57.311 40.909 0.00 0.00 0.00 5.68
769 1139 2.509569 ACAAATATGAACACCACCGCA 58.490 42.857 0.00 0.00 0.00 5.69
770 1140 3.088532 ACAAATATGAACACCACCGCAT 58.911 40.909 0.00 0.00 0.00 4.73
771 1141 3.509575 ACAAATATGAACACCACCGCATT 59.490 39.130 0.00 0.00 0.00 3.56
772 1142 4.021544 ACAAATATGAACACCACCGCATTT 60.022 37.500 0.00 0.00 0.00 2.32
773 1143 3.781079 ATATGAACACCACCGCATTTG 57.219 42.857 0.00 0.00 0.00 2.32
774 1144 0.602562 ATGAACACCACCGCATTTGG 59.397 50.000 0.00 0.00 40.32 3.28
775 1145 1.288752 GAACACCACCGCATTTGGG 59.711 57.895 0.68 0.00 38.59 4.12
782 1152 2.442643 CCGCATTTGGGGCAGGAT 60.443 61.111 0.26 0.00 41.34 3.24
783 1153 2.492773 CCGCATTTGGGGCAGGATC 61.493 63.158 0.26 0.00 41.34 3.36
784 1154 2.492773 CGCATTTGGGGCAGGATCC 61.493 63.158 2.48 2.48 0.00 3.36
785 1155 1.381599 GCATTTGGGGCAGGATCCA 60.382 57.895 15.82 0.00 0.00 3.41
786 1156 0.761702 GCATTTGGGGCAGGATCCAT 60.762 55.000 15.82 0.00 32.48 3.41
787 1157 1.335145 CATTTGGGGCAGGATCCATC 58.665 55.000 15.82 4.51 32.48 3.51
800 1170 4.615588 GGATCCATCCAAAGACTAGGAG 57.384 50.000 6.95 0.00 46.38 3.69
801 1171 3.326297 GGATCCATCCAAAGACTAGGAGG 59.674 52.174 6.95 2.86 46.38 4.30
802 1172 3.776731 TCCATCCAAAGACTAGGAGGA 57.223 47.619 9.41 9.31 37.90 3.71
810 1180 6.026186 TCCAAAGACTAGGAGGAGAAAATCT 58.974 40.000 0.00 0.00 0.00 2.40
811 1181 7.189794 TCCAAAGACTAGGAGGAGAAAATCTA 58.810 38.462 0.00 0.00 0.00 1.98
814 1184 6.025793 AGACTAGGAGGAGAAAATCTAGCT 57.974 41.667 0.00 0.00 32.87 3.32
817 1187 7.888546 AGACTAGGAGGAGAAAATCTAGCTATC 59.111 40.741 0.00 0.00 32.87 2.08
819 1189 8.176780 ACTAGGAGGAGAAAATCTAGCTATCAT 58.823 37.037 0.00 0.00 32.87 2.45
836 1206 6.707599 CTATCATAGCTAGTAAAAACCGGC 57.292 41.667 0.00 0.00 0.00 6.13
837 1207 3.450578 TCATAGCTAGTAAAAACCGGCG 58.549 45.455 0.00 0.00 0.00 6.46
838 1208 2.298411 TAGCTAGTAAAAACCGGCGG 57.702 50.000 27.06 27.06 0.00 6.13
856 2848 3.231160 GCGGTTCGTAAAAATGGACAAG 58.769 45.455 0.00 0.00 0.00 3.16
861 2853 6.128499 CGGTTCGTAAAAATGGACAAGATGTA 60.128 38.462 0.00 0.00 0.00 2.29
862 2854 7.571613 CGGTTCGTAAAAATGGACAAGATGTAA 60.572 37.037 0.00 0.00 0.00 2.41
863 2855 8.241367 GGTTCGTAAAAATGGACAAGATGTAAT 58.759 33.333 0.00 0.00 0.00 1.89
864 2856 9.061610 GTTCGTAAAAATGGACAAGATGTAATG 57.938 33.333 0.00 0.00 0.00 1.90
865 2857 8.330466 TCGTAAAAATGGACAAGATGTAATGT 57.670 30.769 0.00 0.00 0.00 2.71
866 2858 9.438228 TCGTAAAAATGGACAAGATGTAATGTA 57.562 29.630 0.00 0.00 0.00 2.29
870 2862 9.705290 AAAAATGGACAAGATGTAATGTAAACC 57.295 29.630 0.00 0.00 0.00 3.27
871 2863 8.415950 AAATGGACAAGATGTAATGTAAACCA 57.584 30.769 0.00 0.00 0.00 3.67
872 2864 8.593945 AATGGACAAGATGTAATGTAAACCAT 57.406 30.769 0.00 0.00 34.78 3.55
873 2865 8.593945 ATGGACAAGATGTAATGTAAACCATT 57.406 30.769 0.00 0.00 45.68 3.16
874 2866 8.415950 TGGACAAGATGTAATGTAAACCATTT 57.584 30.769 0.00 0.00 41.01 2.32
875 2867 8.865090 TGGACAAGATGTAATGTAAACCATTTT 58.135 29.630 0.00 0.00 41.01 1.82
876 2868 9.705290 GGACAAGATGTAATGTAAACCATTTTT 57.295 29.630 0.00 0.00 41.01 1.94
1094 3092 2.835895 GCCGTCCTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
1095 3093 2.123640 CCGTCCTCCTCCTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
1096 3094 2.695970 CCGTCCTCCTCCTCCTCCT 61.696 68.421 0.00 0.00 0.00 3.69
1097 3095 1.152839 CGTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1098 3096 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1099 3097 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
1100 3098 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1101 3099 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1102 3100 2.197324 CCTCCTCCTCCTCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
1103 3101 2.197324 CTCCTCCTCCTCCTCCGG 59.803 72.222 0.00 0.00 0.00 5.14
1104 3102 4.144727 TCCTCCTCCTCCTCCGGC 62.145 72.222 0.00 0.00 0.00 6.13
1448 3467 0.108756 GACACCGTCTCCTTGGTAGC 60.109 60.000 0.00 0.00 36.50 3.58
1467 3486 2.359967 ACTCTACCGCCCTCCTTGC 61.360 63.158 0.00 0.00 0.00 4.01
1485 3504 1.381165 GCCTCCTCACTCTCTCGGTC 61.381 65.000 0.00 0.00 0.00 4.79
1524 3543 1.610554 GCTTCAGTACACGCCCCCTA 61.611 60.000 0.00 0.00 0.00 3.53
1585 3615 0.689055 TGCCACTCACTGCAGATCTT 59.311 50.000 23.35 0.00 32.77 2.40
1595 3625 5.005740 TCACTGCAGATCTTGTTGCTTAAT 58.994 37.500 23.35 0.00 40.87 1.40
1596 3626 5.474532 TCACTGCAGATCTTGTTGCTTAATT 59.525 36.000 23.35 0.00 40.87 1.40
1602 3632 9.787532 TGCAGATCTTGTTGCTTAATTATTTAC 57.212 29.630 6.27 0.00 40.87 2.01
1637 3667 2.869801 TGAATGCCGAATCCGAATACAC 59.130 45.455 0.00 0.00 38.22 2.90
1638 3668 1.878953 ATGCCGAATCCGAATACACC 58.121 50.000 0.00 0.00 38.22 4.16
1664 3694 6.402222 AGAAATGGACATGAGAACTGAGTAC 58.598 40.000 0.00 0.00 0.00 2.73
1674 3704 4.202461 TGAGAACTGAGTACTTGCCCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
1689 3720 3.738982 CCCAAATTTTCCCCAACTGAAC 58.261 45.455 0.00 0.00 0.00 3.18
1692 3723 4.815846 CCAAATTTTCCCCAACTGAACAAG 59.184 41.667 0.00 0.00 0.00 3.16
1697 3728 7.610580 ATTTTCCCCAACTGAACAAGAATTA 57.389 32.000 0.00 0.00 0.00 1.40
1719 3750 3.222603 AGTGTTGTCCCCACAGAATTTC 58.777 45.455 0.00 0.00 35.24 2.17
1735 3766 6.546034 ACAGAATTTCCCCTATTGATTAACCG 59.454 38.462 0.00 0.00 0.00 4.44
1747 3778 6.619801 ATTGATTAACCGATGCTAGTTTCC 57.380 37.500 0.00 0.00 0.00 3.13
1761 3792 9.988815 GATGCTAGTTTCCTGATATTCTTTAGA 57.011 33.333 0.00 0.00 0.00 2.10
1774 3805 8.840321 TGATATTCTTTAGATTGCCTTTAGTGC 58.160 33.333 0.00 0.00 0.00 4.40
1780 3811 2.040278 AGATTGCCTTTAGTGCTGTGGA 59.960 45.455 0.00 0.00 0.00 4.02
1857 3888 8.999431 TGCCTTTAGTTATTCTGAAGTTAAGTG 58.001 33.333 0.00 0.00 37.86 3.16
1858 3889 9.000486 GCCTTTAGTTATTCTGAAGTTAAGTGT 58.000 33.333 0.00 0.00 37.86 3.55
2175 4215 5.181245 TGGTAACATTTTCTGTCTTGCTAGC 59.819 40.000 8.10 8.10 46.17 3.42
2179 4219 5.706916 ACATTTTCTGTCTTGCTAGCAATG 58.293 37.500 29.40 21.99 35.20 2.82
2249 4289 5.239525 GTGGGAAGCCAGTAATTGACATATC 59.760 44.000 0.00 0.00 0.00 1.63
2250 4290 5.132648 TGGGAAGCCAGTAATTGACATATCT 59.867 40.000 0.00 0.00 0.00 1.98
2251 4291 6.064717 GGGAAGCCAGTAATTGACATATCTT 58.935 40.000 0.00 0.00 0.00 2.40
2252 4292 6.547510 GGGAAGCCAGTAATTGACATATCTTT 59.452 38.462 0.00 0.00 0.00 2.52
2253 4293 7.420800 GGAAGCCAGTAATTGACATATCTTTG 58.579 38.462 0.00 0.00 0.00 2.77
2377 4418 4.633126 CACCACTTGTCATCTAATGTCCTG 59.367 45.833 0.00 0.00 0.00 3.86
2436 4477 8.980832 ATAAGTAGTTCTGATATCCCCAAGAT 57.019 34.615 0.00 0.00 39.15 2.40
2456 4497 8.960591 CCAAGATGAAATAGTTAACAGGTTGAT 58.039 33.333 8.61 0.00 0.00 2.57
2506 4548 4.944177 AGTGTAGGATACCCACTTGTACT 58.056 43.478 0.00 0.00 44.33 2.73
2514 4556 6.040616 AGGATACCCACTTGTACTTCTTATCG 59.959 42.308 0.00 0.00 33.88 2.92
2569 4611 2.299867 CCCACACCAATCTTCCTTTTGG 59.700 50.000 0.29 0.29 46.37 3.28
2647 4689 3.165875 GCATCACCTAGCCTACCATCTA 58.834 50.000 0.00 0.00 0.00 1.98
2658 4700 5.224441 AGCCTACCATCTACCTATTTTGGA 58.776 41.667 0.00 0.00 0.00 3.53
2710 4752 5.424121 TTCTTTTGTAGAAAGCTCACTGC 57.576 39.130 0.00 0.00 39.90 4.40
2711 4753 4.024893 TTCTTTTGTAGAAAGCTCACTGCG 60.025 41.667 0.00 0.00 41.35 5.18
2712 4754 6.425135 TTCTTTTGTAGAAAGCTCACTGCGT 61.425 40.000 0.00 0.00 41.35 5.24
2734 4776 7.101781 GCGTTTTGTGTTATGTATAAAATGCG 58.898 34.615 0.00 0.00 40.87 4.73
2737 4779 8.369588 GTTTTGTGTTATGTATAAAATGCGGTG 58.630 33.333 0.00 0.00 0.00 4.94
2760 4802 6.956371 GTGCAATTCTAAACTGAAAAGGCACT 60.956 38.462 16.37 0.00 41.89 4.40
2832 4953 9.476202 AAGTTTAACAATCCAATTCTAAACTGC 57.524 29.630 12.62 0.00 37.65 4.40
2846 4967 3.801114 AAACTGCTTTTGGTGGAGAAC 57.199 42.857 0.00 0.00 0.00 3.01
2848 4969 1.308998 CTGCTTTTGGTGGAGAACGT 58.691 50.000 0.00 0.00 0.00 3.99
2861 4982 6.432783 TGGTGGAGAACGTTTTGATATCATTT 59.567 34.615 6.17 0.00 0.00 2.32
2863 4984 8.455682 GGTGGAGAACGTTTTGATATCATTTTA 58.544 33.333 6.17 0.00 0.00 1.52
2864 4985 9.490663 GTGGAGAACGTTTTGATATCATTTTAG 57.509 33.333 6.17 0.67 0.00 1.85
2865 4986 9.443323 TGGAGAACGTTTTGATATCATTTTAGA 57.557 29.630 6.17 0.00 0.00 2.10
2898 5019 5.620738 TTAGAAGGCTTACTGCATCTCAT 57.379 39.130 0.00 0.00 45.15 2.90
2901 5022 4.102838 AGAAGGCTTACTGCATCTCATGAT 59.897 41.667 0.00 0.00 45.15 2.45
2902 5023 5.306419 AGAAGGCTTACTGCATCTCATGATA 59.694 40.000 0.00 0.00 45.15 2.15
2903 5024 5.758790 AGGCTTACTGCATCTCATGATAT 57.241 39.130 0.00 0.00 45.15 1.63
2923 5044 9.992910 ATGATATATGTATAAAATGCAAGTGCG 57.007 29.630 0.00 0.00 45.83 5.34
2932 5053 7.975866 ATAAAATGCAAGTGCGATTCTAAAG 57.024 32.000 0.00 0.00 45.83 1.85
2944 5065 2.122783 TTCTAAAGTGGAATGGCCCG 57.877 50.000 0.00 0.00 34.97 6.13
2946 5067 1.379309 TAAAGTGGAATGGCCCGGC 60.379 57.895 0.00 0.00 34.97 6.13
3214 5335 2.487762 CTGCCCACAAAACGTGTATGAT 59.512 45.455 0.00 0.00 44.78 2.45
3265 5386 2.034812 CCAGTACGAGGGCTACATTCTC 59.965 54.545 0.00 0.00 0.00 2.87
3328 5449 0.792640 GCATCATCTTATCGCACCCG 59.207 55.000 0.00 0.00 0.00 5.28
3409 5530 1.901591 CCATTGAAGGTGTGCAGAGT 58.098 50.000 0.00 0.00 0.00 3.24
3458 5579 3.444388 CCAGTAGTGAGTCACCCTAGTTC 59.556 52.174 19.71 0.00 34.49 3.01
3513 5634 3.245087 TGTTGTAAAGGGCCAAGCAGATA 60.245 43.478 6.18 0.00 0.00 1.98
3579 5700 6.655062 TGTATAAATTGCTCCTTTATTCGCG 58.345 36.000 0.00 0.00 32.51 5.87
3584 5705 2.627945 TGCTCCTTTATTCGCGTCATT 58.372 42.857 5.77 0.00 0.00 2.57
3602 5723 5.220359 CGTCATTTCAGTCACTGCAATCTAG 60.220 44.000 0.00 0.00 25.88 2.43
3614 5735 5.355071 CACTGCAATCTAGCTTGTATTTCCA 59.645 40.000 8.05 0.00 34.99 3.53
3617 5738 5.123820 TGCAATCTAGCTTGTATTTCCACAC 59.876 40.000 8.05 0.00 34.99 3.82
3618 5739 5.727791 GCAATCTAGCTTGTATTTCCACACG 60.728 44.000 8.05 0.00 0.00 4.49
3619 5740 4.794278 TCTAGCTTGTATTTCCACACGA 57.206 40.909 0.00 0.00 0.00 4.35
3620 5741 5.142061 TCTAGCTTGTATTTCCACACGAA 57.858 39.130 0.00 0.00 0.00 3.85
3621 5742 4.927425 TCTAGCTTGTATTTCCACACGAAC 59.073 41.667 0.00 0.00 0.00 3.95
3622 5743 3.740115 AGCTTGTATTTCCACACGAACT 58.260 40.909 0.00 0.00 0.00 3.01
3623 5744 4.134563 AGCTTGTATTTCCACACGAACTT 58.865 39.130 0.00 0.00 0.00 2.66
3624 5745 4.024048 AGCTTGTATTTCCACACGAACTTG 60.024 41.667 0.00 0.00 0.00 3.16
3625 5746 3.889196 TGTATTTCCACACGAACTTGC 57.111 42.857 0.00 0.00 0.00 4.01
3626 5747 3.472652 TGTATTTCCACACGAACTTGCT 58.527 40.909 0.00 0.00 0.00 3.91
3627 5748 3.249799 TGTATTTCCACACGAACTTGCTG 59.750 43.478 0.00 0.00 0.00 4.41
3628 5749 2.031258 TTTCCACACGAACTTGCTGA 57.969 45.000 0.00 0.00 0.00 4.26
3629 5750 2.031258 TTCCACACGAACTTGCTGAA 57.969 45.000 0.00 0.00 0.00 3.02
3630 5751 1.581934 TCCACACGAACTTGCTGAAG 58.418 50.000 0.00 0.00 35.07 3.02
3631 5752 0.588252 CCACACGAACTTGCTGAAGG 59.412 55.000 0.00 0.00 32.95 3.46
3632 5753 1.581934 CACACGAACTTGCTGAAGGA 58.418 50.000 0.00 0.00 32.95 3.36
3633 5754 1.528586 CACACGAACTTGCTGAAGGAG 59.471 52.381 0.00 0.00 32.95 3.69
3634 5755 1.151668 CACGAACTTGCTGAAGGAGG 58.848 55.000 0.00 0.00 32.95 4.30
3635 5756 0.759346 ACGAACTTGCTGAAGGAGGT 59.241 50.000 0.00 0.00 32.95 3.85
3636 5757 1.141053 ACGAACTTGCTGAAGGAGGTT 59.859 47.619 0.00 0.00 38.30 3.50
3637 5758 2.367567 ACGAACTTGCTGAAGGAGGTTA 59.632 45.455 0.00 0.00 35.96 2.85
3638 5759 3.181458 ACGAACTTGCTGAAGGAGGTTAA 60.181 43.478 0.00 0.00 35.96 2.01
3639 5760 3.433615 CGAACTTGCTGAAGGAGGTTAAG 59.566 47.826 0.00 0.00 35.96 1.85
3640 5761 4.642429 GAACTTGCTGAAGGAGGTTAAGA 58.358 43.478 0.00 0.00 35.96 2.10
3641 5762 4.917906 ACTTGCTGAAGGAGGTTAAGAT 57.082 40.909 0.00 0.00 32.95 2.40
3642 5763 5.248380 ACTTGCTGAAGGAGGTTAAGATT 57.752 39.130 0.00 0.00 32.95 2.40
3643 5764 5.006386 ACTTGCTGAAGGAGGTTAAGATTG 58.994 41.667 0.00 0.00 32.95 2.67
3644 5765 4.640771 TGCTGAAGGAGGTTAAGATTGT 57.359 40.909 0.00 0.00 0.00 2.71
3645 5766 4.985538 TGCTGAAGGAGGTTAAGATTGTT 58.014 39.130 0.00 0.00 0.00 2.83
3646 5767 5.385198 TGCTGAAGGAGGTTAAGATTGTTT 58.615 37.500 0.00 0.00 0.00 2.83
3647 5768 5.833131 TGCTGAAGGAGGTTAAGATTGTTTT 59.167 36.000 0.00 0.00 0.00 2.43
3648 5769 6.016276 TGCTGAAGGAGGTTAAGATTGTTTTC 60.016 38.462 0.00 0.00 0.00 2.29
3649 5770 6.570571 GCTGAAGGAGGTTAAGATTGTTTTCC 60.571 42.308 0.00 0.00 0.00 3.13
3650 5771 5.472137 TGAAGGAGGTTAAGATTGTTTTCCG 59.528 40.000 0.00 0.00 0.00 4.30
3690 5811 7.340699 GTGACGAATCTGATACTAGCATTTTG 58.659 38.462 0.00 0.00 0.00 2.44
3710 5832 1.199097 GTGCTGGTTTCCGTATTGTGG 59.801 52.381 0.00 0.00 0.00 4.17
3712 5834 2.156098 GCTGGTTTCCGTATTGTGGAA 58.844 47.619 0.00 0.00 43.59 3.53
3732 5854 4.711846 GGAAGGGGTTTCTTTTGCATAGAT 59.288 41.667 0.00 0.00 36.03 1.98
3791 5913 9.758651 ACCTTACATGAATTTAACCTGTTTTTC 57.241 29.630 0.00 0.00 0.00 2.29
3835 5957 7.997482 AGAAGATCTGAAATGTCAAATGGATG 58.003 34.615 0.00 0.00 31.88 3.51
3986 6110 6.868864 TCCTTCGAATCGATCCATAATTTCTC 59.131 38.462 6.06 0.00 35.23 2.87
4017 6141 1.372087 CTGTCTCTGGCCGCCATTTC 61.372 60.000 13.86 4.93 30.82 2.17
4024 6148 4.179579 GCCGCCATTTCCGACTGC 62.180 66.667 0.00 0.00 0.00 4.40
4065 6189 2.579787 GTCCGGACACGATGAGCG 60.580 66.667 29.75 0.00 44.60 5.03
4084 6208 0.327259 GTCCCTCCTAGCCGGTTTTT 59.673 55.000 1.90 0.00 0.00 1.94
4189 6313 3.297620 CCGGTTTGCTGCTTGCCT 61.298 61.111 0.00 0.00 42.00 4.75
4190 6314 2.730094 CGGTTTGCTGCTTGCCTT 59.270 55.556 0.00 0.00 42.00 4.35
4321 6457 4.553323 CATCAGACTGCACATATGATCGA 58.447 43.478 10.38 0.00 0.00 3.59
4322 6458 4.234530 TCAGACTGCACATATGATCGAG 57.765 45.455 10.38 2.31 0.00 4.04
4325 6461 3.126073 GACTGCACATATGATCGAGCAA 58.874 45.455 7.76 0.00 0.00 3.91
4326 6462 3.129109 ACTGCACATATGATCGAGCAAG 58.871 45.455 7.76 0.39 0.00 4.01
4327 6463 1.869132 TGCACATATGATCGAGCAAGC 59.131 47.619 7.76 7.90 0.00 4.01
4330 6466 2.541346 CACATATGATCGAGCAAGCGTT 59.459 45.455 7.76 0.00 0.00 4.84
4331 6467 2.541346 ACATATGATCGAGCAAGCGTTG 59.459 45.455 7.76 3.90 0.00 4.10
4332 6468 2.293677 TATGATCGAGCAAGCGTTGT 57.706 45.000 7.76 0.00 0.00 3.32
4333 6469 0.723414 ATGATCGAGCAAGCGTTGTG 59.277 50.000 7.76 0.00 0.00 3.33
4334 6470 1.225854 GATCGAGCAAGCGTTGTGC 60.226 57.895 0.00 0.00 46.98 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.823818 CGAATCGAACCTACCATTTACTAAATT 58.176 33.333 0.00 0.00 0.00 1.82
11 12 8.199449 TCGAATCGAACCTACCATTTACTAAAT 58.801 33.333 1.57 0.00 31.06 1.40
12 13 7.546358 TCGAATCGAACCTACCATTTACTAAA 58.454 34.615 1.57 0.00 31.06 1.85
13 14 7.067372 TCTCGAATCGAACCTACCATTTACTAA 59.933 37.037 6.84 0.00 34.74 2.24
14 15 6.543465 TCTCGAATCGAACCTACCATTTACTA 59.457 38.462 6.84 0.00 34.74 1.82
15 16 5.359009 TCTCGAATCGAACCTACCATTTACT 59.641 40.000 6.84 0.00 34.74 2.24
16 17 5.585390 TCTCGAATCGAACCTACCATTTAC 58.415 41.667 6.84 0.00 34.74 2.01
17 18 5.591472 TCTCTCGAATCGAACCTACCATTTA 59.409 40.000 6.84 0.00 34.74 1.40
18 19 4.401519 TCTCTCGAATCGAACCTACCATTT 59.598 41.667 6.84 0.00 34.74 2.32
19 20 3.952323 TCTCTCGAATCGAACCTACCATT 59.048 43.478 6.84 0.00 34.74 3.16
20 21 3.552875 TCTCTCGAATCGAACCTACCAT 58.447 45.455 6.84 0.00 34.74 3.55
21 22 2.943690 CTCTCTCGAATCGAACCTACCA 59.056 50.000 6.84 0.00 34.74 3.25
22 23 3.204526 TCTCTCTCGAATCGAACCTACC 58.795 50.000 6.84 0.00 34.74 3.18
23 24 4.879104 TTCTCTCTCGAATCGAACCTAC 57.121 45.455 6.84 0.00 34.74 3.18
24 25 5.892160 TTTTCTCTCTCGAATCGAACCTA 57.108 39.130 6.84 0.00 34.74 3.08
25 26 4.785511 TTTTCTCTCTCGAATCGAACCT 57.214 40.909 6.84 0.00 34.74 3.50
26 27 4.268884 CCATTTTCTCTCTCGAATCGAACC 59.731 45.833 6.84 0.00 34.74 3.62
27 28 4.865365 ACCATTTTCTCTCTCGAATCGAAC 59.135 41.667 6.84 0.00 34.74 3.95
28 29 5.073311 ACCATTTTCTCTCTCGAATCGAA 57.927 39.130 6.84 0.00 34.74 3.71
29 30 4.720649 ACCATTTTCTCTCTCGAATCGA 57.279 40.909 4.91 4.91 0.00 3.59
30 31 6.197468 GTCTTACCATTTTCTCTCTCGAATCG 59.803 42.308 0.00 0.00 0.00 3.34
31 32 7.036220 TGTCTTACCATTTTCTCTCTCGAATC 58.964 38.462 0.00 0.00 0.00 2.52
32 33 6.936279 TGTCTTACCATTTTCTCTCTCGAAT 58.064 36.000 0.00 0.00 0.00 3.34
33 34 6.340962 TGTCTTACCATTTTCTCTCTCGAA 57.659 37.500 0.00 0.00 0.00 3.71
34 35 5.977489 TGTCTTACCATTTTCTCTCTCGA 57.023 39.130 0.00 0.00 0.00 4.04
35 36 6.091441 CCTTTGTCTTACCATTTTCTCTCTCG 59.909 42.308 0.00 0.00 0.00 4.04
36 37 6.372937 CCCTTTGTCTTACCATTTTCTCTCTC 59.627 42.308 0.00 0.00 0.00 3.20
37 38 6.183361 ACCCTTTGTCTTACCATTTTCTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
38 39 6.004574 ACCCTTTGTCTTACCATTTTCTCTC 58.995 40.000 0.00 0.00 0.00 3.20
39 40 5.953571 ACCCTTTGTCTTACCATTTTCTCT 58.046 37.500 0.00 0.00 0.00 3.10
40 41 7.754851 TTACCCTTTGTCTTACCATTTTCTC 57.245 36.000 0.00 0.00 0.00 2.87
41 42 7.232737 CCTTTACCCTTTGTCTTACCATTTTCT 59.767 37.037 0.00 0.00 0.00 2.52
42 43 7.375834 CCTTTACCCTTTGTCTTACCATTTTC 58.624 38.462 0.00 0.00 0.00 2.29
43 44 6.269077 CCCTTTACCCTTTGTCTTACCATTTT 59.731 38.462 0.00 0.00 0.00 1.82
44 45 5.778241 CCCTTTACCCTTTGTCTTACCATTT 59.222 40.000 0.00 0.00 0.00 2.32
45 46 5.162914 ACCCTTTACCCTTTGTCTTACCATT 60.163 40.000 0.00 0.00 0.00 3.16
46 47 4.355889 ACCCTTTACCCTTTGTCTTACCAT 59.644 41.667 0.00 0.00 0.00 3.55
47 48 3.723154 ACCCTTTACCCTTTGTCTTACCA 59.277 43.478 0.00 0.00 0.00 3.25
52 53 2.158370 CCCAACCCTTTACCCTTTGTCT 60.158 50.000 0.00 0.00 0.00 3.41
107 108 8.021396 GCATAAGAATTTAGTGTTCCTTTTCGT 58.979 33.333 0.00 0.00 0.00 3.85
114 115 7.009540 GCACATTGCATAAGAATTTAGTGTTCC 59.990 37.037 0.00 0.00 44.26 3.62
157 158 8.715191 TGATTCCAATTATTACCAAAACATGC 57.285 30.769 0.00 0.00 0.00 4.06
213 214 7.913821 GCCTTTATTGGGTTTAAGTATTCTTCG 59.086 37.037 0.00 0.00 35.36 3.79
255 256 4.280436 TGTCTTCCGCCTCATTTAAGAA 57.720 40.909 0.00 0.00 0.00 2.52
256 257 3.973206 TGTCTTCCGCCTCATTTAAGA 57.027 42.857 0.00 0.00 0.00 2.10
270 271 4.771590 TTGATGAAACAGGCATGTCTTC 57.228 40.909 3.65 11.37 39.29 2.87
276 277 7.178983 TCCTTTCTTAATTGATGAAACAGGCAT 59.821 33.333 0.00 0.00 30.34 4.40
336 337 1.134640 GTGTGTGGGGTTGTTTTTCCC 60.135 52.381 0.00 0.00 42.73 3.97
350 351 4.321156 CCCATGTTCCTTGTAATGTGTGTG 60.321 45.833 0.00 0.00 0.00 3.82
373 374 2.484062 CCAGGTTGGCCGATGATGC 61.484 63.158 0.00 0.00 40.50 3.91
374 375 3.831883 CCAGGTTGGCCGATGATG 58.168 61.111 0.00 0.00 40.50 3.07
395 396 2.126346 GCTTTGTGGCGTCCATGC 60.126 61.111 1.90 2.34 35.28 4.06
402 767 0.662619 TTCTCAACAGCTTTGTGGCG 59.337 50.000 8.01 0.00 37.29 5.69
409 774 6.017109 ACGAATGTTATTGTTCTCAACAGCTT 60.017 34.615 0.00 0.00 43.27 3.74
465 830 1.880340 CCTGCTTGACGAGGCGATC 60.880 63.158 0.00 0.00 0.00 3.69
484 849 4.856801 CTTGTCCATCCCGGGCCG 62.857 72.222 21.46 21.46 39.41 6.13
486 851 2.124695 GTCTTGTCCATCCCGGGC 60.125 66.667 18.49 0.73 41.21 6.13
487 852 1.128200 TATGTCTTGTCCATCCCGGG 58.872 55.000 16.85 16.85 34.36 5.73
488 853 2.434336 TCTTATGTCTTGTCCATCCCGG 59.566 50.000 0.00 0.00 0.00 5.73
489 854 3.133003 AGTCTTATGTCTTGTCCATCCCG 59.867 47.826 0.00 0.00 0.00 5.14
491 856 5.602628 GGTAGTCTTATGTCTTGTCCATCC 58.397 45.833 0.00 0.00 0.00 3.51
492 857 5.067413 TCGGTAGTCTTATGTCTTGTCCATC 59.933 44.000 0.00 0.00 0.00 3.51
493 858 4.954202 TCGGTAGTCTTATGTCTTGTCCAT 59.046 41.667 0.00 0.00 0.00 3.41
494 859 4.338012 TCGGTAGTCTTATGTCTTGTCCA 58.662 43.478 0.00 0.00 0.00 4.02
495 860 4.978083 TCGGTAGTCTTATGTCTTGTCC 57.022 45.455 0.00 0.00 0.00 4.02
497 862 6.096987 ACATGATCGGTAGTCTTATGTCTTGT 59.903 38.462 0.00 0.00 0.00 3.16
498 863 6.507900 ACATGATCGGTAGTCTTATGTCTTG 58.492 40.000 0.00 0.00 0.00 3.02
508 873 5.453648 GTGTCTATGACATGATCGGTAGTC 58.546 45.833 0.00 0.00 44.63 2.59
513 878 3.733443 TGGTGTCTATGACATGATCGG 57.267 47.619 0.00 0.00 44.63 4.18
518 883 5.608449 AGATCACATGGTGTCTATGACATG 58.392 41.667 3.65 0.00 44.63 3.21
533 898 1.202348 TCGTCGCACTCAAGATCACAT 59.798 47.619 0.00 0.00 0.00 3.21
570 935 3.889134 GACAAACCCGACCCGACCC 62.889 68.421 0.00 0.00 0.00 4.46
571 936 2.357881 GACAAACCCGACCCGACC 60.358 66.667 0.00 0.00 0.00 4.79
592 957 2.669950 GCCGCCAAATGAAAACGTATGT 60.670 45.455 0.00 0.00 0.00 2.29
626 996 3.493503 ACGTCTTCGATCAAACAGAAACC 59.506 43.478 0.00 0.00 40.62 3.27
627 997 4.710528 ACGTCTTCGATCAAACAGAAAC 57.289 40.909 0.00 0.00 40.62 2.78
633 1003 3.518590 ACCCATACGTCTTCGATCAAAC 58.481 45.455 0.00 0.00 40.62 2.93
639 1009 3.947910 AGAAAACCCATACGTCTTCGA 57.052 42.857 0.00 0.00 40.62 3.71
640 1010 5.689068 GGTATAGAAAACCCATACGTCTTCG 59.311 44.000 0.00 0.00 43.34 3.79
644 1014 5.910614 AGTGGTATAGAAAACCCATACGTC 58.089 41.667 0.00 0.00 36.06 4.34
646 1016 7.267128 TGTAAGTGGTATAGAAAACCCATACG 58.733 38.462 0.00 0.00 36.06 3.06
697 1067 3.374042 TGGAGGAGTGGTTTGTCAAAA 57.626 42.857 0.00 0.00 0.00 2.44
698 1068 3.593442 ATGGAGGAGTGGTTTGTCAAA 57.407 42.857 0.00 0.00 0.00 2.69
699 1069 3.593442 AATGGAGGAGTGGTTTGTCAA 57.407 42.857 0.00 0.00 0.00 3.18
700 1070 4.927267 ATAATGGAGGAGTGGTTTGTCA 57.073 40.909 0.00 0.00 0.00 3.58
701 1071 5.253330 TGAATAATGGAGGAGTGGTTTGTC 58.747 41.667 0.00 0.00 0.00 3.18
702 1072 5.255397 TGAATAATGGAGGAGTGGTTTGT 57.745 39.130 0.00 0.00 0.00 2.83
703 1073 6.458751 CGAATGAATAATGGAGGAGTGGTTTG 60.459 42.308 0.00 0.00 0.00 2.93
704 1074 5.590259 CGAATGAATAATGGAGGAGTGGTTT 59.410 40.000 0.00 0.00 0.00 3.27
705 1075 5.126067 CGAATGAATAATGGAGGAGTGGTT 58.874 41.667 0.00 0.00 0.00 3.67
706 1076 4.708177 CGAATGAATAATGGAGGAGTGGT 58.292 43.478 0.00 0.00 0.00 4.16
707 1077 3.499918 GCGAATGAATAATGGAGGAGTGG 59.500 47.826 0.00 0.00 0.00 4.00
708 1078 4.129380 TGCGAATGAATAATGGAGGAGTG 58.871 43.478 0.00 0.00 0.00 3.51
709 1079 4.422073 TGCGAATGAATAATGGAGGAGT 57.578 40.909 0.00 0.00 0.00 3.85
710 1080 5.756195 TTTGCGAATGAATAATGGAGGAG 57.244 39.130 0.00 0.00 0.00 3.69
711 1081 6.329496 GTTTTTGCGAATGAATAATGGAGGA 58.671 36.000 0.00 0.00 0.00 3.71
712 1082 5.519927 GGTTTTTGCGAATGAATAATGGAGG 59.480 40.000 0.00 0.00 0.00 4.30
713 1083 5.229887 CGGTTTTTGCGAATGAATAATGGAG 59.770 40.000 0.00 0.00 0.00 3.86
714 1084 5.098893 CGGTTTTTGCGAATGAATAATGGA 58.901 37.500 0.00 0.00 0.00 3.41
715 1085 4.862018 ACGGTTTTTGCGAATGAATAATGG 59.138 37.500 0.00 0.00 0.00 3.16
716 1086 6.232788 CAACGGTTTTTGCGAATGAATAATG 58.767 36.000 0.00 0.00 0.00 1.90
717 1087 5.164002 GCAACGGTTTTTGCGAATGAATAAT 60.164 36.000 0.00 0.00 42.38 1.28
718 1088 4.149046 GCAACGGTTTTTGCGAATGAATAA 59.851 37.500 0.00 0.00 42.38 1.40
719 1089 3.670991 GCAACGGTTTTTGCGAATGAATA 59.329 39.130 0.00 0.00 42.38 1.75
720 1090 2.474735 GCAACGGTTTTTGCGAATGAAT 59.525 40.909 0.00 0.00 42.38 2.57
721 1091 1.855360 GCAACGGTTTTTGCGAATGAA 59.145 42.857 0.00 0.00 42.38 2.57
722 1092 1.482278 GCAACGGTTTTTGCGAATGA 58.518 45.000 0.00 0.00 42.38 2.57
723 1093 3.996017 GCAACGGTTTTTGCGAATG 57.004 47.368 0.00 0.00 42.38 2.67
729 1099 5.896922 TGTAAATGATGCAACGGTTTTTG 57.103 34.783 0.00 0.00 0.00 2.44
730 1100 6.910536 TTTGTAAATGATGCAACGGTTTTT 57.089 29.167 0.00 0.00 33.04 1.94
731 1101 8.655092 CATATTTGTAAATGATGCAACGGTTTT 58.345 29.630 0.00 0.00 33.04 2.43
732 1102 8.031864 TCATATTTGTAAATGATGCAACGGTTT 58.968 29.630 0.00 0.00 33.04 3.27
733 1103 7.542890 TCATATTTGTAAATGATGCAACGGTT 58.457 30.769 0.00 0.00 33.04 4.44
734 1104 7.094508 TCATATTTGTAAATGATGCAACGGT 57.905 32.000 0.00 0.00 33.04 4.83
735 1105 7.487509 TGTTCATATTTGTAAATGATGCAACGG 59.512 33.333 0.00 0.00 33.04 4.44
736 1106 8.313227 GTGTTCATATTTGTAAATGATGCAACG 58.687 33.333 0.00 0.00 33.04 4.10
737 1107 8.594687 GGTGTTCATATTTGTAAATGATGCAAC 58.405 33.333 0.00 0.00 33.04 4.17
738 1108 8.309656 TGGTGTTCATATTTGTAAATGATGCAA 58.690 29.630 0.00 0.00 32.40 4.08
739 1109 7.758980 GTGGTGTTCATATTTGTAAATGATGCA 59.241 33.333 0.00 0.00 32.40 3.96
740 1110 7.222611 GGTGGTGTTCATATTTGTAAATGATGC 59.777 37.037 0.27 0.00 32.40 3.91
741 1111 7.431960 CGGTGGTGTTCATATTTGTAAATGATG 59.568 37.037 0.27 1.87 32.40 3.07
742 1112 7.479980 CGGTGGTGTTCATATTTGTAAATGAT 58.520 34.615 0.27 0.00 32.40 2.45
743 1113 6.623986 GCGGTGGTGTTCATATTTGTAAATGA 60.624 38.462 0.27 0.00 0.00 2.57
744 1114 5.514914 GCGGTGGTGTTCATATTTGTAAATG 59.485 40.000 0.27 0.00 0.00 2.32
745 1115 5.184096 TGCGGTGGTGTTCATATTTGTAAAT 59.816 36.000 0.00 0.00 0.00 1.40
746 1116 4.519350 TGCGGTGGTGTTCATATTTGTAAA 59.481 37.500 0.00 0.00 0.00 2.01
747 1117 4.072839 TGCGGTGGTGTTCATATTTGTAA 58.927 39.130 0.00 0.00 0.00 2.41
748 1118 3.676093 TGCGGTGGTGTTCATATTTGTA 58.324 40.909 0.00 0.00 0.00 2.41
749 1119 2.509569 TGCGGTGGTGTTCATATTTGT 58.490 42.857 0.00 0.00 0.00 2.83
750 1120 3.781079 ATGCGGTGGTGTTCATATTTG 57.219 42.857 0.00 0.00 0.00 2.32
751 1121 4.493547 CAAATGCGGTGGTGTTCATATTT 58.506 39.130 0.00 0.00 0.00 1.40
752 1122 3.119173 CCAAATGCGGTGGTGTTCATATT 60.119 43.478 0.00 0.00 0.00 1.28
753 1123 2.426738 CCAAATGCGGTGGTGTTCATAT 59.573 45.455 0.00 0.00 0.00 1.78
754 1124 1.815613 CCAAATGCGGTGGTGTTCATA 59.184 47.619 0.00 0.00 0.00 2.15
755 1125 0.602562 CCAAATGCGGTGGTGTTCAT 59.397 50.000 0.00 0.00 0.00 2.57
756 1126 1.459455 CCCAAATGCGGTGGTGTTCA 61.459 55.000 0.09 0.00 34.01 3.18
757 1127 1.288752 CCCAAATGCGGTGGTGTTC 59.711 57.895 0.09 0.00 34.01 3.18
758 1128 2.206536 CCCCAAATGCGGTGGTGTT 61.207 57.895 0.09 0.00 34.01 3.32
759 1129 2.600173 CCCCAAATGCGGTGGTGT 60.600 61.111 0.09 0.00 34.01 4.16
760 1130 4.067913 GCCCCAAATGCGGTGGTG 62.068 66.667 0.09 0.00 34.01 4.17
761 1131 4.612279 TGCCCCAAATGCGGTGGT 62.612 61.111 0.09 0.00 34.01 4.16
762 1132 3.762247 CTGCCCCAAATGCGGTGG 61.762 66.667 0.00 0.00 35.77 4.61
763 1133 3.762247 CCTGCCCCAAATGCGGTG 61.762 66.667 0.00 0.00 33.12 4.94
764 1134 3.301222 ATCCTGCCCCAAATGCGGT 62.301 57.895 0.00 0.00 33.12 5.68
765 1135 2.442643 ATCCTGCCCCAAATGCGG 60.443 61.111 0.00 0.00 34.81 5.69
766 1136 2.492773 GGATCCTGCCCCAAATGCG 61.493 63.158 3.84 0.00 0.00 4.73
767 1137 0.761702 ATGGATCCTGCCCCAAATGC 60.762 55.000 14.23 0.00 35.85 3.56
768 1138 1.335145 GATGGATCCTGCCCCAAATG 58.665 55.000 14.23 0.00 35.85 2.32
769 1139 0.189327 GGATGGATCCTGCCCCAAAT 59.811 55.000 14.23 0.00 43.73 2.32
770 1140 1.620259 GGATGGATCCTGCCCCAAA 59.380 57.895 14.23 0.00 43.73 3.28
771 1141 3.345747 GGATGGATCCTGCCCCAA 58.654 61.111 14.23 0.00 43.73 4.12
780 1150 4.227197 TCCTCCTAGTCTTTGGATGGATC 58.773 47.826 0.00 0.00 30.41 3.36
781 1151 4.078336 TCTCCTCCTAGTCTTTGGATGGAT 60.078 45.833 10.33 0.00 32.96 3.41
782 1152 3.272285 TCTCCTCCTAGTCTTTGGATGGA 59.728 47.826 0.00 0.00 32.66 3.41
783 1153 3.647636 TCTCCTCCTAGTCTTTGGATGG 58.352 50.000 0.00 0.00 0.00 3.51
784 1154 5.683876 TTTCTCCTCCTAGTCTTTGGATG 57.316 43.478 0.00 0.00 0.00 3.51
785 1155 6.676189 AGATTTTCTCCTCCTAGTCTTTGGAT 59.324 38.462 0.00 0.00 0.00 3.41
786 1156 6.026186 AGATTTTCTCCTCCTAGTCTTTGGA 58.974 40.000 0.00 0.00 0.00 3.53
787 1157 6.306643 AGATTTTCTCCTCCTAGTCTTTGG 57.693 41.667 0.00 0.00 0.00 3.28
788 1158 6.983890 GCTAGATTTTCTCCTCCTAGTCTTTG 59.016 42.308 0.00 0.00 31.86 2.77
789 1159 6.900743 AGCTAGATTTTCTCCTCCTAGTCTTT 59.099 38.462 0.00 0.00 31.86 2.52
790 1160 6.440354 AGCTAGATTTTCTCCTCCTAGTCTT 58.560 40.000 0.00 0.00 31.86 3.01
791 1161 6.025793 AGCTAGATTTTCTCCTCCTAGTCT 57.974 41.667 0.00 0.00 31.86 3.24
793 1163 7.531317 TGATAGCTAGATTTTCTCCTCCTAGT 58.469 38.462 0.00 0.00 31.86 2.57
795 1165 9.693739 CTATGATAGCTAGATTTTCTCCTCCTA 57.306 37.037 0.00 0.00 0.00 2.94
814 1184 5.224888 CGCCGGTTTTTACTAGCTATGATA 58.775 41.667 1.90 0.00 0.00 2.15
817 1187 2.542595 CCGCCGGTTTTTACTAGCTATG 59.457 50.000 1.90 0.00 0.00 2.23
819 1189 1.550072 ACCGCCGGTTTTTACTAGCTA 59.450 47.619 1.02 0.00 27.29 3.32
824 1194 0.532640 ACGAACCGCCGGTTTTTACT 60.533 50.000 24.22 0.00 46.95 2.24
825 1195 1.144136 TACGAACCGCCGGTTTTTAC 58.856 50.000 24.22 9.21 46.95 2.01
826 1196 1.871080 TTACGAACCGCCGGTTTTTA 58.129 45.000 24.22 14.09 46.95 1.52
829 1199 1.020437 TTTTTACGAACCGCCGGTTT 58.980 45.000 24.22 10.89 46.95 3.27
831 1201 0.518195 CATTTTTACGAACCGCCGGT 59.482 50.000 1.02 1.02 37.65 5.28
832 1202 0.179184 CCATTTTTACGAACCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
833 1203 0.797542 TCCATTTTTACGAACCGCCG 59.202 50.000 0.00 0.00 0.00 6.46
834 1204 1.536331 TGTCCATTTTTACGAACCGCC 59.464 47.619 0.00 0.00 0.00 6.13
835 1205 2.973419 TGTCCATTTTTACGAACCGC 57.027 45.000 0.00 0.00 0.00 5.68
836 1206 4.735662 TCTTGTCCATTTTTACGAACCG 57.264 40.909 0.00 0.00 0.00 4.44
837 1207 6.009115 ACATCTTGTCCATTTTTACGAACC 57.991 37.500 0.00 0.00 0.00 3.62
838 1208 9.061610 CATTACATCTTGTCCATTTTTACGAAC 57.938 33.333 0.00 0.00 0.00 3.95
883 2875 8.567285 TTTGGGTTGTTCAAAATGTTTTACAT 57.433 26.923 0.00 0.00 41.31 2.29
884 2876 7.979444 TTTGGGTTGTTCAAAATGTTTTACA 57.021 28.000 0.00 0.00 32.01 2.41
885 2877 8.508062 ACTTTTGGGTTGTTCAAAATGTTTTAC 58.492 29.630 0.00 0.00 41.41 2.01
886 2878 8.622948 ACTTTTGGGTTGTTCAAAATGTTTTA 57.377 26.923 0.00 0.00 41.41 1.52
887 2879 7.517614 ACTTTTGGGTTGTTCAAAATGTTTT 57.482 28.000 0.00 0.00 41.41 2.43
924 2916 7.678171 ACTGAATTTACAAATTTGTATCCCCCT 59.322 33.333 27.14 11.94 42.66 4.79
1362 3381 0.251354 TGCTGTGGAGGAAGAGCATC 59.749 55.000 0.00 0.00 41.14 3.91
1448 3467 1.517832 CAAGGAGGGCGGTAGAGTG 59.482 63.158 0.00 0.00 0.00 3.51
1456 3475 4.168291 GAGGAGGCAAGGAGGGCG 62.168 72.222 0.00 0.00 38.57 6.13
1467 3486 0.034960 TGACCGAGAGAGTGAGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
1485 3504 2.480416 GCACTCCTCGTCTGGTTATCTG 60.480 54.545 0.00 0.00 0.00 2.90
1524 3543 6.301486 ACTGAAACCGTTAACCCTAGAAATT 58.699 36.000 0.00 0.00 0.00 1.82
1585 3615 7.486551 GGCAACATCGTAAATAATTAAGCAACA 59.513 33.333 0.00 0.00 0.00 3.33
1595 3625 6.516739 TCAAATGGGCAACATCGTAAATAA 57.483 33.333 0.00 0.00 39.40 1.40
1596 3626 6.516739 TTCAAATGGGCAACATCGTAAATA 57.483 33.333 0.00 0.00 39.40 1.40
1602 3632 1.928503 GCATTCAAATGGGCAACATCG 59.071 47.619 4.98 0.00 39.40 3.84
1638 3668 5.704515 ACTCAGTTCTCATGTCCATTTCTTG 59.295 40.000 0.00 0.00 0.00 3.02
1664 3694 2.106338 AGTTGGGGAAAATTTGGGCAAG 59.894 45.455 0.00 0.00 0.00 4.01
1674 3704 5.948742 AATTCTTGTTCAGTTGGGGAAAA 57.051 34.783 0.00 0.00 0.00 2.29
1689 3720 4.582656 TGTGGGGACAACACTTAATTCTTG 59.417 41.667 0.00 0.00 46.06 3.02
1692 3723 4.394729 TCTGTGGGGACAACACTTAATTC 58.605 43.478 0.00 0.00 46.06 2.17
1697 3728 3.312736 AATTCTGTGGGGACAACACTT 57.687 42.857 0.00 0.00 46.06 3.16
1719 3750 4.021102 AGCATCGGTTAATCAATAGGGG 57.979 45.455 0.00 0.00 0.00 4.79
1735 3766 9.988815 TCTAAAGAATATCAGGAAACTAGCATC 57.011 33.333 0.00 0.00 40.21 3.91
1761 3792 2.584835 TCCACAGCACTAAAGGCAAT 57.415 45.000 0.00 0.00 0.00 3.56
1774 3805 7.636150 ACTTCTGGAATTCATTAATCCACAG 57.364 36.000 7.93 2.29 0.00 3.66
1857 3888 9.516314 AAGCTCAAATCAAACTACAAACTTAAC 57.484 29.630 0.00 0.00 0.00 2.01
1859 3890 9.515020 CAAAGCTCAAATCAAACTACAAACTTA 57.485 29.630 0.00 0.00 0.00 2.24
1860 3891 8.034804 ACAAAGCTCAAATCAAACTACAAACTT 58.965 29.630 0.00 0.00 0.00 2.66
1861 3892 7.489113 CACAAAGCTCAAATCAAACTACAAACT 59.511 33.333 0.00 0.00 0.00 2.66
1862 3893 7.254084 CCACAAAGCTCAAATCAAACTACAAAC 60.254 37.037 0.00 0.00 0.00 2.93
1863 3894 6.756074 CCACAAAGCTCAAATCAAACTACAAA 59.244 34.615 0.00 0.00 0.00 2.83
2175 4215 2.365582 GTGGTGGGCTAGTTACCATTG 58.634 52.381 14.91 0.00 45.38 2.82
2179 4219 0.252197 CTGGTGGTGGGCTAGTTACC 59.748 60.000 5.55 5.55 35.05 2.85
2190 4230 1.880819 GCCATTTCTGCCTGGTGGTG 61.881 60.000 0.00 0.00 34.86 4.17
2377 4418 9.695526 TTTATGATTGATGTTTTATGCTATGCC 57.304 29.630 0.00 0.00 0.00 4.40
2456 4497 1.142060 CGCAGGGTCCCATAATGGTTA 59.858 52.381 11.55 0.00 35.17 2.85
2506 4548 5.759059 TGACCCTAGTACCTTCGATAAGAA 58.241 41.667 0.00 0.00 34.37 2.52
2514 4556 4.710375 TCAACAGATGACCCTAGTACCTTC 59.290 45.833 0.00 0.00 31.50 3.46
2569 4611 5.156355 CAAAGCACTGGACACATTGTTATC 58.844 41.667 0.00 0.00 30.61 1.75
2647 4689 6.604795 CAGAACATTCTCCATCCAAAATAGGT 59.395 38.462 0.00 0.00 34.74 3.08
2658 4700 6.598503 TGAATGCTATCAGAACATTCTCCAT 58.401 36.000 18.10 0.00 46.29 3.41
2701 4743 1.094785 AACACAAAACGCAGTGAGCT 58.905 45.000 0.00 0.00 45.00 4.09
2710 4752 7.271653 ACCGCATTTTATACATAACACAAAACG 59.728 33.333 0.00 0.00 0.00 3.60
2711 4753 8.369588 CACCGCATTTTATACATAACACAAAAC 58.630 33.333 0.00 0.00 0.00 2.43
2712 4754 7.062371 GCACCGCATTTTATACATAACACAAAA 59.938 33.333 0.00 0.00 0.00 2.44
2734 4776 4.686091 GCCTTTTCAGTTTAGAATTGCACC 59.314 41.667 0.00 0.00 0.00 5.01
2737 4779 5.403466 CAGTGCCTTTTCAGTTTAGAATTGC 59.597 40.000 0.00 0.00 0.00 3.56
2818 4939 4.990426 CCACCAAAAGCAGTTTAGAATTGG 59.010 41.667 0.00 0.00 41.18 3.16
2832 4953 4.364415 TCAAAACGTTCTCCACCAAAAG 57.636 40.909 0.00 0.00 0.00 2.27
2875 4996 5.420725 TGAGATGCAGTAAGCCTTCTAAA 57.579 39.130 0.00 0.00 44.83 1.85
2877 4998 4.651045 TCATGAGATGCAGTAAGCCTTCTA 59.349 41.667 0.00 0.00 44.83 2.10
2898 5019 9.213799 TCGCACTTGCATTTTATACATATATCA 57.786 29.630 1.48 0.00 42.21 2.15
2902 5023 8.786898 AGAATCGCACTTGCATTTTATACATAT 58.213 29.630 1.48 0.00 42.21 1.78
2903 5024 8.153479 AGAATCGCACTTGCATTTTATACATA 57.847 30.769 1.48 0.00 42.21 2.29
2921 5042 2.033424 GGCCATTCCACTTTAGAATCGC 59.967 50.000 0.00 0.00 37.19 4.58
2923 5044 2.618709 CGGGCCATTCCACTTTAGAATC 59.381 50.000 4.39 0.00 36.21 2.52
2944 5065 0.890542 TCTGTGCACATCAACCTGCC 60.891 55.000 22.00 0.00 31.97 4.85
2946 5067 1.538512 CCTTCTGTGCACATCAACCTG 59.461 52.381 22.00 6.84 0.00 4.00
3214 5335 3.866379 AAGGGCATCAACCAGCGCA 62.866 57.895 11.47 0.00 45.01 6.09
3409 5530 3.371097 GACCGGAGCGCCATCTTCA 62.371 63.158 9.46 0.00 0.00 3.02
3458 5579 3.067180 GCTTCATGGACACATACCATTGG 59.933 47.826 0.00 0.00 44.51 3.16
3513 5634 4.130118 CTCTCCACAGCAGTAAAAGTGTT 58.870 43.478 0.00 0.00 0.00 3.32
3576 5697 0.179240 GCAGTGACTGAAATGACGCG 60.179 55.000 18.18 3.53 32.44 6.01
3579 5700 5.447010 GCTAGATTGCAGTGACTGAAATGAC 60.447 44.000 22.95 9.89 39.60 3.06
3584 5705 3.969287 AGCTAGATTGCAGTGACTGAA 57.031 42.857 18.18 1.76 32.44 3.02
3602 5723 4.219033 CAAGTTCGTGTGGAAATACAAGC 58.781 43.478 0.00 0.00 36.14 4.01
3614 5735 1.541233 CCTCCTTCAGCAAGTTCGTGT 60.541 52.381 0.00 0.00 0.00 4.49
3617 5738 1.884235 AACCTCCTTCAGCAAGTTCG 58.116 50.000 0.00 0.00 0.00 3.95
3618 5739 4.642429 TCTTAACCTCCTTCAGCAAGTTC 58.358 43.478 0.00 0.00 0.00 3.01
3619 5740 4.706842 TCTTAACCTCCTTCAGCAAGTT 57.293 40.909 0.00 0.00 0.00 2.66
3620 5741 4.917906 ATCTTAACCTCCTTCAGCAAGT 57.082 40.909 0.00 0.00 0.00 3.16
3621 5742 5.006386 ACAATCTTAACCTCCTTCAGCAAG 58.994 41.667 0.00 0.00 0.00 4.01
3622 5743 4.985538 ACAATCTTAACCTCCTTCAGCAA 58.014 39.130 0.00 0.00 0.00 3.91
3623 5744 4.640771 ACAATCTTAACCTCCTTCAGCA 57.359 40.909 0.00 0.00 0.00 4.41
3624 5745 5.966742 AAACAATCTTAACCTCCTTCAGC 57.033 39.130 0.00 0.00 0.00 4.26
3625 5746 6.348540 CGGAAAACAATCTTAACCTCCTTCAG 60.349 42.308 0.00 0.00 0.00 3.02
3626 5747 5.472137 CGGAAAACAATCTTAACCTCCTTCA 59.528 40.000 0.00 0.00 0.00 3.02
3627 5748 5.106277 CCGGAAAACAATCTTAACCTCCTTC 60.106 44.000 0.00 0.00 0.00 3.46
3628 5749 4.765339 CCGGAAAACAATCTTAACCTCCTT 59.235 41.667 0.00 0.00 0.00 3.36
3629 5750 4.332828 CCGGAAAACAATCTTAACCTCCT 58.667 43.478 0.00 0.00 0.00 3.69
3630 5751 3.442625 CCCGGAAAACAATCTTAACCTCC 59.557 47.826 0.73 0.00 0.00 4.30
3631 5752 4.077108 ACCCGGAAAACAATCTTAACCTC 58.923 43.478 0.73 0.00 0.00 3.85
3632 5753 3.824443 CACCCGGAAAACAATCTTAACCT 59.176 43.478 0.73 0.00 0.00 3.50
3633 5754 3.570975 ACACCCGGAAAACAATCTTAACC 59.429 43.478 0.73 0.00 0.00 2.85
3634 5755 4.612033 CGACACCCGGAAAACAATCTTAAC 60.612 45.833 0.73 0.00 33.91 2.01
3635 5756 3.499157 CGACACCCGGAAAACAATCTTAA 59.501 43.478 0.73 0.00 33.91 1.85
3636 5757 3.068560 CGACACCCGGAAAACAATCTTA 58.931 45.455 0.73 0.00 33.91 2.10
3637 5758 1.877443 CGACACCCGGAAAACAATCTT 59.123 47.619 0.73 0.00 33.91 2.40
3638 5759 1.202722 ACGACACCCGGAAAACAATCT 60.203 47.619 0.73 0.00 43.93 2.40
3639 5760 1.069500 CACGACACCCGGAAAACAATC 60.069 52.381 0.73 0.00 43.93 2.67
3640 5761 0.948678 CACGACACCCGGAAAACAAT 59.051 50.000 0.73 0.00 43.93 2.71
3641 5762 0.107800 TCACGACACCCGGAAAACAA 60.108 50.000 0.73 0.00 43.93 2.83
3642 5763 0.107800 TTCACGACACCCGGAAAACA 60.108 50.000 0.73 0.00 43.93 2.83
3643 5764 0.305617 GTTCACGACACCCGGAAAAC 59.694 55.000 0.73 0.00 43.93 2.43
3644 5765 0.814812 GGTTCACGACACCCGGAAAA 60.815 55.000 0.73 0.00 43.93 2.29
3645 5766 1.227615 GGTTCACGACACCCGGAAA 60.228 57.895 0.73 0.00 43.93 3.13
3646 5767 2.422591 GGTTCACGACACCCGGAA 59.577 61.111 0.73 0.00 43.93 4.30
3690 5811 1.199097 CCACAATACGGAAACCAGCAC 59.801 52.381 0.00 0.00 0.00 4.40
3701 5823 3.067684 AGAAACCCCTTCCACAATACG 57.932 47.619 0.00 0.00 34.21 3.06
3710 5832 5.921962 ATCTATGCAAAAGAAACCCCTTC 57.078 39.130 6.25 0.00 0.00 3.46
3712 5834 7.400052 ACATTTATCTATGCAAAAGAAACCCCT 59.600 33.333 6.25 0.00 0.00 4.79
3732 5854 9.143155 TCTACCTAACTAGATGCATGACATTTA 57.857 33.333 2.46 0.00 39.84 1.40
3791 5913 9.868277 GATCTTCTGAATGTATATAACCAGAGG 57.132 37.037 0.00 0.00 33.02 3.69
3826 5948 7.768240 TGAGATTTCTGTGAATCATCCATTTG 58.232 34.615 0.00 0.00 38.27 2.32
3835 5957 8.180267 ACGATGAATTTGAGATTTCTGTGAATC 58.820 33.333 0.00 0.00 36.50 2.52
3986 6110 3.406764 CCAGAGACAGGAAAAGGAAGTG 58.593 50.000 0.00 0.00 0.00 3.16
4017 6141 0.101399 ACATTAGCTCGAGCAGTCGG 59.899 55.000 36.87 23.50 46.80 4.79
4024 6148 0.460284 ACCGGCAACATTAGCTCGAG 60.460 55.000 8.45 8.45 0.00 4.04
4057 6181 1.953017 CTAGGAGGGACGCTCATCG 59.047 63.158 19.96 6.59 45.38 3.84
4065 6189 0.327259 AAAAACCGGCTAGGAGGGAC 59.673 55.000 0.00 0.00 45.00 4.46
4066 6190 0.326927 CAAAAACCGGCTAGGAGGGA 59.673 55.000 0.00 0.00 45.00 4.20
4106 6230 2.421424 CCCTGCTGCTCTTGATAAACAC 59.579 50.000 0.00 0.00 0.00 3.32
4222 6349 2.182030 GAGAACGGCAGAGTCGGG 59.818 66.667 0.00 0.00 33.75 5.14
4223 6350 2.202492 CGAGAACGGCAGAGTCGG 60.202 66.667 0.00 0.00 33.75 4.79
4271 6407 3.054802 CAGGAGGTACAGCTCCAAGAAAT 60.055 47.826 25.14 4.81 41.98 2.17
4273 6409 1.902508 CAGGAGGTACAGCTCCAAGAA 59.097 52.381 25.14 0.00 41.98 2.52
4333 6469 1.086696 TTCCGAGCTAATGCACAAGC 58.913 50.000 13.03 13.03 42.74 4.01
4334 6470 4.361451 AAATTCCGAGCTAATGCACAAG 57.639 40.909 0.00 0.00 42.74 3.16
4541 6686 0.398522 ACCCGGAGCTCATGGACATA 60.399 55.000 23.32 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.