Multiple sequence alignment - TraesCS7D01G097600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G097600 chr7D 100.000 2411 0 0 1 2411 58864633 58862223 0.000000e+00 4453
1 TraesCS7D01G097600 chr7D 92.063 630 39 6 1008 1636 58793630 58794249 0.000000e+00 876
2 TraesCS7D01G097600 chr7D 87.838 518 35 17 1881 2383 58794625 58795129 1.240000e-162 582
3 TraesCS7D01G097600 chr7D 94.805 77 4 0 1694 1770 58794347 58794423 1.170000e-23 121
4 TraesCS7D01G097600 chr7A 87.604 1323 97 34 356 1643 63428248 63426958 0.000000e+00 1472
5 TraesCS7D01G097600 chr7A 89.934 914 62 15 747 1643 63399015 63398115 0.000000e+00 1151
6 TraesCS7D01G097600 chr7A 90.630 651 45 7 705 1348 63343409 63344050 0.000000e+00 850
7 TraesCS7D01G097600 chr7A 87.751 498 45 13 855 1341 110070705 110071197 3.480000e-158 568
8 TraesCS7D01G097600 chr7A 86.364 550 35 11 1820 2339 63426666 63426127 4.500000e-157 564
9 TraesCS7D01G097600 chr7A 85.390 308 29 10 1344 1643 63356057 63356356 3.010000e-79 305
10 TraesCS7D01G097600 chr7A 81.923 260 38 6 1879 2129 63123578 63123837 6.750000e-51 211
11 TraesCS7D01G097600 chr7A 94.805 77 4 0 1694 1770 63426871 63426795 1.170000e-23 121
12 TraesCS7D01G097600 chr5B 89.903 931 66 18 723 1643 339101215 339100303 0.000000e+00 1173
13 TraesCS7D01G097600 chr5D 90.483 704 45 12 946 1643 298123720 298124407 0.000000e+00 909
14 TraesCS7D01G097600 chr7B 85.589 798 68 32 843 1610 63934812 63935592 0.000000e+00 793
15 TraesCS7D01G097600 chrUn 92.037 540 34 3 1104 1643 467638637 467639167 0.000000e+00 750
16 TraesCS7D01G097600 chrUn 86.806 144 17 2 2 144 135321512 135321370 2.480000e-35 159
17 TraesCS7D01G097600 chrUn 86.806 144 17 2 2 144 135354666 135354524 2.480000e-35 159
18 TraesCS7D01G097600 chrUn 86.806 144 17 2 2 144 239422118 239421976 2.480000e-35 159
19 TraesCS7D01G097600 chrUn 86.806 144 17 2 2 144 245489153 245489011 2.480000e-35 159
20 TraesCS7D01G097600 chrUn 86.806 144 17 2 2 144 367976805 367976947 2.480000e-35 159
21 TraesCS7D01G097600 chrUn 86.111 144 18 2 2 144 91000334 91000476 1.150000e-33 154
22 TraesCS7D01G097600 chrUn 86.111 144 18 2 2 144 91056741 91056883 1.150000e-33 154
23 TraesCS7D01G097600 chrUn 86.111 144 17 3 2 144 91107569 91107710 4.150000e-33 152
24 TraesCS7D01G097600 chrUn 97.403 77 2 0 1694 1770 467639253 467639329 5.410000e-27 132
25 TraesCS7D01G097600 chr4A 87.204 633 36 23 1817 2409 675920668 675921295 0.000000e+00 678
26 TraesCS7D01G097600 chr3B 87.952 498 52 5 1883 2376 790083306 790082813 4.470000e-162 580
27 TraesCS7D01G097600 chr2A 83.871 155 20 4 3 154 694151173 694151021 2.500000e-30 143
28 TraesCS7D01G097600 chr4D 78.000 150 11 8 1461 1610 321815997 321816124 9.240000e-10 75
29 TraesCS7D01G097600 chr1B 78.146 151 9 12 1461 1610 605450458 605450585 9.240000e-10 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G097600 chr7D 58862223 58864633 2410 True 4453.000000 4453 100.000000 1 2411 1 chr7D.!!$R1 2410
1 TraesCS7D01G097600 chr7D 58793630 58795129 1499 False 526.333333 876 91.568667 1008 2383 3 chr7D.!!$F1 1375
2 TraesCS7D01G097600 chr7A 63398115 63399015 900 True 1151.000000 1151 89.934000 747 1643 1 chr7A.!!$R1 896
3 TraesCS7D01G097600 chr7A 63343409 63344050 641 False 850.000000 850 90.630000 705 1348 1 chr7A.!!$F2 643
4 TraesCS7D01G097600 chr7A 63426127 63428248 2121 True 719.000000 1472 89.591000 356 2339 3 chr7A.!!$R2 1983
5 TraesCS7D01G097600 chr5B 339100303 339101215 912 True 1173.000000 1173 89.903000 723 1643 1 chr5B.!!$R1 920
6 TraesCS7D01G097600 chr5D 298123720 298124407 687 False 909.000000 909 90.483000 946 1643 1 chr5D.!!$F1 697
7 TraesCS7D01G097600 chr7B 63934812 63935592 780 False 793.000000 793 85.589000 843 1610 1 chr7B.!!$F1 767
8 TraesCS7D01G097600 chrUn 467638637 467639329 692 False 441.000000 750 94.720000 1104 1770 2 chrUn.!!$F5 666
9 TraesCS7D01G097600 chr4A 675920668 675921295 627 False 678.000000 678 87.204000 1817 2409 1 chr4A.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 870 0.030705 TTATCTGCCTCCTCCAGCCT 60.031 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2232 0.388134 CACCTGAGCTTGCATTGTGC 60.388 55.0 0.0 0.0 45.29 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.273170 TCAAGCATGACAACTTTCTTTTCG 58.727 37.500 0.00 0.00 0.00 3.46
28 29 4.228912 AGCATGACAACTTTCTTTTCGG 57.771 40.909 0.00 0.00 0.00 4.30
29 30 3.882888 AGCATGACAACTTTCTTTTCGGA 59.117 39.130 0.00 0.00 0.00 4.55
30 31 4.520492 AGCATGACAACTTTCTTTTCGGAT 59.480 37.500 0.00 0.00 0.00 4.18
31 32 4.618489 GCATGACAACTTTCTTTTCGGATG 59.382 41.667 0.00 0.00 0.00 3.51
32 33 5.562696 GCATGACAACTTTCTTTTCGGATGA 60.563 40.000 0.00 0.00 0.00 2.92
33 34 5.418310 TGACAACTTTCTTTTCGGATGAC 57.582 39.130 0.00 0.00 0.00 3.06
34 35 4.878971 TGACAACTTTCTTTTCGGATGACA 59.121 37.500 0.00 0.00 0.00 3.58
35 36 5.355630 TGACAACTTTCTTTTCGGATGACAA 59.644 36.000 0.00 0.00 0.00 3.18
36 37 5.821204 ACAACTTTCTTTTCGGATGACAAG 58.179 37.500 0.00 0.00 33.98 3.16
37 38 5.357032 ACAACTTTCTTTTCGGATGACAAGT 59.643 36.000 0.00 0.00 34.28 3.16
38 39 6.127730 ACAACTTTCTTTTCGGATGACAAGTT 60.128 34.615 0.00 0.00 34.28 2.66
39 40 6.451064 ACTTTCTTTTCGGATGACAAGTTT 57.549 33.333 0.00 0.00 34.28 2.66
40 41 6.495706 ACTTTCTTTTCGGATGACAAGTTTC 58.504 36.000 0.00 0.00 34.28 2.78
41 42 6.094881 ACTTTCTTTTCGGATGACAAGTTTCA 59.905 34.615 0.00 0.00 34.28 2.69
42 43 5.673337 TCTTTTCGGATGACAAGTTTCAG 57.327 39.130 0.00 0.00 34.28 3.02
43 44 5.123227 TCTTTTCGGATGACAAGTTTCAGT 58.877 37.500 0.00 0.00 34.28 3.41
44 45 5.588648 TCTTTTCGGATGACAAGTTTCAGTT 59.411 36.000 0.00 0.00 34.28 3.16
45 46 5.828299 TTTCGGATGACAAGTTTCAGTTT 57.172 34.783 0.00 0.00 0.00 2.66
46 47 5.418310 TTCGGATGACAAGTTTCAGTTTC 57.582 39.130 0.00 0.00 0.00 2.78
47 48 4.703897 TCGGATGACAAGTTTCAGTTTCT 58.296 39.130 0.00 0.00 0.00 2.52
48 49 5.123227 TCGGATGACAAGTTTCAGTTTCTT 58.877 37.500 0.00 0.00 0.00 2.52
49 50 5.236478 TCGGATGACAAGTTTCAGTTTCTTC 59.764 40.000 0.00 0.00 0.00 2.87
50 51 5.444122 GGATGACAAGTTTCAGTTTCTTCG 58.556 41.667 0.00 0.00 0.00 3.79
51 52 4.875544 TGACAAGTTTCAGTTTCTTCGG 57.124 40.909 0.00 0.00 0.00 4.30
52 53 3.625764 TGACAAGTTTCAGTTTCTTCGGG 59.374 43.478 0.00 0.00 0.00 5.14
53 54 2.949644 ACAAGTTTCAGTTTCTTCGGGG 59.050 45.455 0.00 0.00 0.00 5.73
54 55 2.949644 CAAGTTTCAGTTTCTTCGGGGT 59.050 45.455 0.00 0.00 0.00 4.95
55 56 3.292492 AGTTTCAGTTTCTTCGGGGTT 57.708 42.857 0.00 0.00 0.00 4.11
56 57 3.628008 AGTTTCAGTTTCTTCGGGGTTT 58.372 40.909 0.00 0.00 0.00 3.27
57 58 3.380320 AGTTTCAGTTTCTTCGGGGTTTG 59.620 43.478 0.00 0.00 0.00 2.93
58 59 2.721425 TCAGTTTCTTCGGGGTTTGT 57.279 45.000 0.00 0.00 0.00 2.83
59 60 3.007473 TCAGTTTCTTCGGGGTTTGTT 57.993 42.857 0.00 0.00 0.00 2.83
60 61 3.358118 TCAGTTTCTTCGGGGTTTGTTT 58.642 40.909 0.00 0.00 0.00 2.83
61 62 3.764972 TCAGTTTCTTCGGGGTTTGTTTT 59.235 39.130 0.00 0.00 0.00 2.43
62 63 4.221041 TCAGTTTCTTCGGGGTTTGTTTTT 59.779 37.500 0.00 0.00 0.00 1.94
63 64 4.565166 CAGTTTCTTCGGGGTTTGTTTTTC 59.435 41.667 0.00 0.00 0.00 2.29
64 65 4.464951 AGTTTCTTCGGGGTTTGTTTTTCT 59.535 37.500 0.00 0.00 0.00 2.52
65 66 5.046878 AGTTTCTTCGGGGTTTGTTTTTCTT 60.047 36.000 0.00 0.00 0.00 2.52
66 67 5.408880 TTCTTCGGGGTTTGTTTTTCTTT 57.591 34.783 0.00 0.00 0.00 2.52
67 68 5.408880 TCTTCGGGGTTTGTTTTTCTTTT 57.591 34.783 0.00 0.00 0.00 2.27
68 69 5.412640 TCTTCGGGGTTTGTTTTTCTTTTC 58.587 37.500 0.00 0.00 0.00 2.29
69 70 3.771798 TCGGGGTTTGTTTTTCTTTTCG 58.228 40.909 0.00 0.00 0.00 3.46
70 71 2.861335 CGGGGTTTGTTTTTCTTTTCGG 59.139 45.455 0.00 0.00 0.00 4.30
71 72 3.429135 CGGGGTTTGTTTTTCTTTTCGGA 60.429 43.478 0.00 0.00 0.00 4.55
72 73 4.699637 GGGGTTTGTTTTTCTTTTCGGAT 58.300 39.130 0.00 0.00 0.00 4.18
73 74 4.509970 GGGGTTTGTTTTTCTTTTCGGATG 59.490 41.667 0.00 0.00 0.00 3.51
74 75 5.113383 GGGTTTGTTTTTCTTTTCGGATGT 58.887 37.500 0.00 0.00 0.00 3.06
75 76 5.233476 GGGTTTGTTTTTCTTTTCGGATGTC 59.767 40.000 0.00 0.00 0.00 3.06
76 77 5.808030 GGTTTGTTTTTCTTTTCGGATGTCA 59.192 36.000 0.00 0.00 0.00 3.58
77 78 6.311690 GGTTTGTTTTTCTTTTCGGATGTCAA 59.688 34.615 0.00 0.00 0.00 3.18
78 79 6.879188 TTGTTTTTCTTTTCGGATGTCAAC 57.121 33.333 0.00 0.00 0.00 3.18
79 80 6.202516 TGTTTTTCTTTTCGGATGTCAACT 57.797 33.333 0.00 0.00 0.00 3.16
80 81 6.626302 TGTTTTTCTTTTCGGATGTCAACTT 58.374 32.000 0.00 0.00 0.00 2.66
81 82 7.093992 TGTTTTTCTTTTCGGATGTCAACTTT 58.906 30.769 0.00 0.00 0.00 2.66
82 83 8.244802 TGTTTTTCTTTTCGGATGTCAACTTTA 58.755 29.630 0.00 0.00 0.00 1.85
83 84 8.743099 GTTTTTCTTTTCGGATGTCAACTTTAG 58.257 33.333 0.00 0.00 0.00 1.85
84 85 7.562454 TTTCTTTTCGGATGTCAACTTTAGT 57.438 32.000 0.00 0.00 0.00 2.24
85 86 7.562454 TTCTTTTCGGATGTCAACTTTAGTT 57.438 32.000 0.00 0.00 39.12 2.24
110 111 3.402628 AAAAGTCGGTGTCATAGTGCT 57.597 42.857 0.00 0.00 0.00 4.40
111 112 3.402628 AAAGTCGGTGTCATAGTGCTT 57.597 42.857 0.00 0.00 0.00 3.91
112 113 2.656560 AGTCGGTGTCATAGTGCTTC 57.343 50.000 0.00 0.00 0.00 3.86
113 114 1.893137 AGTCGGTGTCATAGTGCTTCA 59.107 47.619 0.00 0.00 0.00 3.02
114 115 2.497675 AGTCGGTGTCATAGTGCTTCAT 59.502 45.455 0.00 0.00 0.00 2.57
115 116 2.604914 GTCGGTGTCATAGTGCTTCATG 59.395 50.000 0.00 0.00 0.00 3.07
116 117 1.328680 CGGTGTCATAGTGCTTCATGC 59.671 52.381 0.00 0.00 43.25 4.06
117 118 1.672881 GGTGTCATAGTGCTTCATGCC 59.327 52.381 0.00 0.00 42.00 4.40
118 119 2.358957 GTGTCATAGTGCTTCATGCCA 58.641 47.619 0.00 0.00 42.00 4.92
119 120 2.947652 GTGTCATAGTGCTTCATGCCAT 59.052 45.455 0.00 0.00 42.00 4.40
120 121 4.129380 GTGTCATAGTGCTTCATGCCATA 58.871 43.478 0.00 0.00 42.00 2.74
121 122 4.024556 GTGTCATAGTGCTTCATGCCATAC 60.025 45.833 0.00 0.00 42.00 2.39
122 123 3.185188 GTCATAGTGCTTCATGCCATACG 59.815 47.826 0.00 0.00 42.00 3.06
123 124 2.979814 TAGTGCTTCATGCCATACGT 57.020 45.000 0.00 0.00 42.00 3.57
124 125 1.656652 AGTGCTTCATGCCATACGTC 58.343 50.000 0.00 0.00 42.00 4.34
125 126 1.208052 AGTGCTTCATGCCATACGTCT 59.792 47.619 0.00 0.00 42.00 4.18
126 127 1.328680 GTGCTTCATGCCATACGTCTG 59.671 52.381 0.00 0.00 42.00 3.51
127 128 0.305922 GCTTCATGCCATACGTCTGC 59.694 55.000 0.00 0.00 35.15 4.26
128 129 0.940126 CTTCATGCCATACGTCTGCC 59.060 55.000 0.00 0.00 0.00 4.85
129 130 0.251634 TTCATGCCATACGTCTGCCA 59.748 50.000 0.00 0.00 0.00 4.92
130 131 0.461870 TCATGCCATACGTCTGCCAC 60.462 55.000 0.00 0.00 0.00 5.01
131 132 0.462581 CATGCCATACGTCTGCCACT 60.463 55.000 0.00 0.00 0.00 4.00
132 133 0.253044 ATGCCATACGTCTGCCACTT 59.747 50.000 0.00 0.00 0.00 3.16
133 134 0.899019 TGCCATACGTCTGCCACTTA 59.101 50.000 0.00 0.00 0.00 2.24
134 135 1.484653 TGCCATACGTCTGCCACTTAT 59.515 47.619 0.00 0.00 0.00 1.73
135 136 2.135933 GCCATACGTCTGCCACTTATC 58.864 52.381 0.00 0.00 0.00 1.75
136 137 2.483013 GCCATACGTCTGCCACTTATCA 60.483 50.000 0.00 0.00 0.00 2.15
137 138 3.803715 GCCATACGTCTGCCACTTATCAT 60.804 47.826 0.00 0.00 0.00 2.45
138 139 4.380531 CCATACGTCTGCCACTTATCATT 58.619 43.478 0.00 0.00 0.00 2.57
139 140 4.816385 CCATACGTCTGCCACTTATCATTT 59.184 41.667 0.00 0.00 0.00 2.32
140 141 5.296780 CCATACGTCTGCCACTTATCATTTT 59.703 40.000 0.00 0.00 0.00 1.82
141 142 4.685169 ACGTCTGCCACTTATCATTTTG 57.315 40.909 0.00 0.00 0.00 2.44
142 143 3.440173 ACGTCTGCCACTTATCATTTTGG 59.560 43.478 0.00 0.00 0.00 3.28
143 144 3.181497 CGTCTGCCACTTATCATTTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
144 145 3.763897 GTCTGCCACTTATCATTTTGGGT 59.236 43.478 0.00 0.00 0.00 4.51
145 146 4.220602 GTCTGCCACTTATCATTTTGGGTT 59.779 41.667 0.00 0.00 0.00 4.11
146 147 5.417580 GTCTGCCACTTATCATTTTGGGTTA 59.582 40.000 0.00 0.00 0.00 2.85
147 148 6.096846 GTCTGCCACTTATCATTTTGGGTTAT 59.903 38.462 0.00 0.00 0.00 1.89
148 149 6.667414 TCTGCCACTTATCATTTTGGGTTATT 59.333 34.615 0.00 0.00 0.00 1.40
149 150 7.836685 TCTGCCACTTATCATTTTGGGTTATTA 59.163 33.333 0.00 0.00 0.00 0.98
150 151 8.546083 TGCCACTTATCATTTTGGGTTATTAT 57.454 30.769 0.00 0.00 0.00 1.28
151 152 8.986991 TGCCACTTATCATTTTGGGTTATTATT 58.013 29.630 0.00 0.00 0.00 1.40
152 153 9.830975 GCCACTTATCATTTTGGGTTATTATTT 57.169 29.630 0.00 0.00 0.00 1.40
181 182 2.763249 GCAATCCGCTTATGGAAGTG 57.237 50.000 0.00 0.00 42.46 3.16
185 186 4.635769 CGCTTATGGAAGTGGCCA 57.364 55.556 0.00 0.00 43.23 5.36
239 240 5.857471 CATGGTGTATGTTCCATTGGAAT 57.143 39.130 20.67 8.91 44.04 3.01
240 241 6.957920 CATGGTGTATGTTCCATTGGAATA 57.042 37.500 20.67 18.32 44.04 1.75
241 242 7.528996 CATGGTGTATGTTCCATTGGAATAT 57.471 36.000 25.24 25.24 44.04 1.28
242 243 7.954835 CATGGTGTATGTTCCATTGGAATATT 58.045 34.615 26.55 14.96 44.04 1.28
243 244 7.345422 TGGTGTATGTTCCATTGGAATATTG 57.655 36.000 26.55 0.00 44.04 1.90
244 245 7.122048 TGGTGTATGTTCCATTGGAATATTGA 58.878 34.615 26.55 14.37 44.04 2.57
245 246 7.617329 TGGTGTATGTTCCATTGGAATATTGAA 59.383 33.333 26.55 11.26 44.04 2.69
246 247 8.641541 GGTGTATGTTCCATTGGAATATTGAAT 58.358 33.333 26.55 10.65 44.04 2.57
247 248 9.467258 GTGTATGTTCCATTGGAATATTGAATG 57.533 33.333 26.55 1.49 44.04 2.67
248 249 8.640651 TGTATGTTCCATTGGAATATTGAATGG 58.359 33.333 26.55 20.68 44.04 3.16
249 250 7.679732 ATGTTCCATTGGAATATTGAATGGT 57.320 32.000 20.67 10.72 44.04 3.55
250 251 6.876155 TGTTCCATTGGAATATTGAATGGTG 58.124 36.000 20.67 9.42 44.04 4.17
251 252 6.440010 TGTTCCATTGGAATATTGAATGGTGT 59.560 34.615 20.67 0.00 44.04 4.16
252 253 7.038445 TGTTCCATTGGAATATTGAATGGTGTT 60.038 33.333 20.67 0.00 44.04 3.32
253 254 7.111247 TCCATTGGAATATTGAATGGTGTTC 57.889 36.000 23.36 0.00 44.44 3.18
254 255 6.666980 TCCATTGGAATATTGAATGGTGTTCA 59.333 34.615 23.36 10.47 44.44 3.18
255 256 7.345132 TCCATTGGAATATTGAATGGTGTTCAT 59.655 33.333 23.36 0.00 44.44 2.57
256 257 8.640651 CCATTGGAATATTGAATGGTGTTCATA 58.359 33.333 19.41 0.00 40.82 2.15
257 258 9.687210 CATTGGAATATTGAATGGTGTTCATAG 57.313 33.333 0.00 0.00 34.44 2.23
258 259 8.821686 TTGGAATATTGAATGGTGTTCATAGT 57.178 30.769 0.00 0.00 34.44 2.12
259 260 8.821686 TGGAATATTGAATGGTGTTCATAGTT 57.178 30.769 0.00 0.00 34.44 2.24
260 261 8.685427 TGGAATATTGAATGGTGTTCATAGTTG 58.315 33.333 0.00 0.00 34.44 3.16
261 262 8.902806 GGAATATTGAATGGTGTTCATAGTTGA 58.097 33.333 0.00 0.00 34.44 3.18
265 266 6.513806 TGAATGGTGTTCATAGTTGAATGG 57.486 37.500 0.00 0.00 43.49 3.16
266 267 6.009589 TGAATGGTGTTCATAGTTGAATGGT 58.990 36.000 0.00 0.00 43.49 3.55
267 268 7.171653 TGAATGGTGTTCATAGTTGAATGGTA 58.828 34.615 0.00 0.00 43.49 3.25
268 269 7.833682 TGAATGGTGTTCATAGTTGAATGGTAT 59.166 33.333 0.00 0.00 43.49 2.73
269 270 7.572523 ATGGTGTTCATAGTTGAATGGTATG 57.427 36.000 0.00 0.00 43.49 2.39
270 271 5.885352 TGGTGTTCATAGTTGAATGGTATGG 59.115 40.000 0.00 0.00 43.49 2.74
271 272 5.885912 GGTGTTCATAGTTGAATGGTATGGT 59.114 40.000 0.00 0.00 43.49 3.55
272 273 6.183360 GGTGTTCATAGTTGAATGGTATGGTG 60.183 42.308 0.00 0.00 43.49 4.17
273 274 6.374333 GTGTTCATAGTTGAATGGTATGGTGT 59.626 38.462 0.00 0.00 43.49 4.16
274 275 6.374053 TGTTCATAGTTGAATGGTATGGTGTG 59.626 38.462 0.00 0.00 43.49 3.82
275 276 6.061022 TCATAGTTGAATGGTATGGTGTGT 57.939 37.500 0.00 0.00 0.00 3.72
276 277 7.189079 TCATAGTTGAATGGTATGGTGTGTA 57.811 36.000 0.00 0.00 0.00 2.90
277 278 7.801104 TCATAGTTGAATGGTATGGTGTGTAT 58.199 34.615 0.00 0.00 0.00 2.29
278 279 8.271458 TCATAGTTGAATGGTATGGTGTGTATT 58.729 33.333 0.00 0.00 0.00 1.89
279 280 8.559536 CATAGTTGAATGGTATGGTGTGTATTC 58.440 37.037 0.00 0.00 0.00 1.75
280 281 6.721318 AGTTGAATGGTATGGTGTGTATTCT 58.279 36.000 0.00 0.00 0.00 2.40
281 282 6.823689 AGTTGAATGGTATGGTGTGTATTCTC 59.176 38.462 0.00 0.00 0.00 2.87
282 283 6.560003 TGAATGGTATGGTGTGTATTCTCT 57.440 37.500 0.00 0.00 0.00 3.10
283 284 7.669089 TGAATGGTATGGTGTGTATTCTCTA 57.331 36.000 0.00 0.00 0.00 2.43
284 285 8.084985 TGAATGGTATGGTGTGTATTCTCTAA 57.915 34.615 0.00 0.00 0.00 2.10
285 286 8.204160 TGAATGGTATGGTGTGTATTCTCTAAG 58.796 37.037 0.00 0.00 0.00 2.18
286 287 7.914427 ATGGTATGGTGTGTATTCTCTAAGA 57.086 36.000 0.00 0.00 0.00 2.10
287 288 7.348080 TGGTATGGTGTGTATTCTCTAAGAG 57.652 40.000 0.00 0.00 0.00 2.85
288 289 6.323996 TGGTATGGTGTGTATTCTCTAAGAGG 59.676 42.308 0.00 0.00 0.00 3.69
289 290 6.550108 GGTATGGTGTGTATTCTCTAAGAGGA 59.450 42.308 0.00 0.00 0.00 3.71
290 291 7.069578 GGTATGGTGTGTATTCTCTAAGAGGAA 59.930 40.741 0.00 0.00 0.00 3.36
291 292 6.928348 TGGTGTGTATTCTCTAAGAGGAAA 57.072 37.500 0.00 0.00 0.00 3.13
292 293 7.496346 TGGTGTGTATTCTCTAAGAGGAAAT 57.504 36.000 0.00 0.00 0.00 2.17
293 294 8.603898 TGGTGTGTATTCTCTAAGAGGAAATA 57.396 34.615 0.00 0.00 0.00 1.40
294 295 9.213777 TGGTGTGTATTCTCTAAGAGGAAATAT 57.786 33.333 0.00 0.00 0.00 1.28
309 310 9.896645 AAGAGGAAATATAATATGCATCGTCAT 57.103 29.630 0.19 0.00 0.00 3.06
312 313 9.265901 AGGAAATATAATATGCATCGTCATAGC 57.734 33.333 0.19 0.00 32.99 2.97
313 314 9.045223 GGAAATATAATATGCATCGTCATAGCA 57.955 33.333 0.19 0.00 43.14 3.49
320 321 4.123497 TGCATCGTCATAGCATATACCC 57.877 45.455 0.00 0.00 32.55 3.69
321 322 3.118775 TGCATCGTCATAGCATATACCCC 60.119 47.826 0.00 0.00 32.55 4.95
322 323 3.118775 GCATCGTCATAGCATATACCCCA 60.119 47.826 0.00 0.00 0.00 4.96
323 324 4.433615 CATCGTCATAGCATATACCCCAC 58.566 47.826 0.00 0.00 0.00 4.61
324 325 2.490509 TCGTCATAGCATATACCCCACG 59.509 50.000 0.00 0.00 0.00 4.94
325 326 2.618053 GTCATAGCATATACCCCACGC 58.382 52.381 0.00 0.00 0.00 5.34
326 327 1.553248 TCATAGCATATACCCCACGCC 59.447 52.381 0.00 0.00 0.00 5.68
327 328 1.277842 CATAGCATATACCCCACGCCA 59.722 52.381 0.00 0.00 0.00 5.69
328 329 0.682852 TAGCATATACCCCACGCCAC 59.317 55.000 0.00 0.00 0.00 5.01
329 330 1.054406 AGCATATACCCCACGCCACT 61.054 55.000 0.00 0.00 0.00 4.00
330 331 0.602905 GCATATACCCCACGCCACTC 60.603 60.000 0.00 0.00 0.00 3.51
331 332 0.756294 CATATACCCCACGCCACTCA 59.244 55.000 0.00 0.00 0.00 3.41
332 333 0.756903 ATATACCCCACGCCACTCAC 59.243 55.000 0.00 0.00 0.00 3.51
333 334 1.669049 TATACCCCACGCCACTCACG 61.669 60.000 0.00 0.00 0.00 4.35
340 341 4.436998 CGCCACTCACGGACCCTC 62.437 72.222 0.00 0.00 0.00 4.30
341 342 2.997897 GCCACTCACGGACCCTCT 60.998 66.667 0.00 0.00 0.00 3.69
342 343 2.584391 GCCACTCACGGACCCTCTT 61.584 63.158 0.00 0.00 0.00 2.85
343 344 1.255667 GCCACTCACGGACCCTCTTA 61.256 60.000 0.00 0.00 0.00 2.10
344 345 1.263356 CCACTCACGGACCCTCTTAA 58.737 55.000 0.00 0.00 0.00 1.85
345 346 1.067071 CCACTCACGGACCCTCTTAAC 60.067 57.143 0.00 0.00 0.00 2.01
346 347 1.616865 CACTCACGGACCCTCTTAACA 59.383 52.381 0.00 0.00 0.00 2.41
347 348 2.036733 CACTCACGGACCCTCTTAACAA 59.963 50.000 0.00 0.00 0.00 2.83
348 349 2.904434 ACTCACGGACCCTCTTAACAAT 59.096 45.455 0.00 0.00 0.00 2.71
349 350 3.262420 CTCACGGACCCTCTTAACAATG 58.738 50.000 0.00 0.00 0.00 2.82
350 351 2.027561 TCACGGACCCTCTTAACAATGG 60.028 50.000 0.00 0.00 0.00 3.16
351 352 1.280998 ACGGACCCTCTTAACAATGGG 59.719 52.381 0.00 0.00 44.89 4.00
359 360 4.141688 CCCTCTTAACAATGGGTAGAGACC 60.142 50.000 8.62 0.00 46.13 3.85
370 371 3.095102 GGTAGAGACCGATGTTTAGGC 57.905 52.381 0.00 0.00 35.52 3.93
442 445 4.469586 TCAGTTAGACATGCTATGTTGGGA 59.530 41.667 0.00 0.00 45.03 4.37
479 482 9.923143 AATATATGTAAGATGCAGCGTTACTTA 57.077 29.630 18.44 16.81 0.00 2.24
483 486 6.771076 TGTAAGATGCAGCGTTACTTAATTG 58.229 36.000 18.44 0.00 0.00 2.32
533 536 7.982919 TCAAATGAGAAAATGGGCATTTATCTG 59.017 33.333 0.00 0.00 39.88 2.90
535 538 6.455360 TGAGAAAATGGGCATTTATCTGTC 57.545 37.500 1.22 0.00 39.88 3.51
536 539 6.189859 TGAGAAAATGGGCATTTATCTGTCT 58.810 36.000 1.22 0.00 39.88 3.41
537 540 6.664816 TGAGAAAATGGGCATTTATCTGTCTT 59.335 34.615 1.22 0.00 39.88 3.01
548 551 7.201794 GGCATTTATCTGTCTTTAGGGGTAAAC 60.202 40.741 0.00 0.00 0.00 2.01
559 562 5.643421 TTAGGGGTAAACGGGCATTTATA 57.357 39.130 0.00 0.00 0.00 0.98
560 563 4.523168 AGGGGTAAACGGGCATTTATAA 57.477 40.909 0.00 0.00 0.00 0.98
580 583 2.187946 GCCATGGACCGGACAGAG 59.812 66.667 18.40 3.57 0.00 3.35
616 620 1.200020 CATTTTGAGCAAGTCCCGGAC 59.800 52.381 9.81 9.81 0.00 4.79
668 693 2.922335 GCCAATCGTTTCTTGGTTGCTC 60.922 50.000 4.19 0.00 44.17 4.26
674 699 4.420168 TCGTTTCTTGGTTGCTCAAAAAG 58.580 39.130 0.00 1.84 0.00 2.27
675 700 4.156922 TCGTTTCTTGGTTGCTCAAAAAGA 59.843 37.500 5.42 5.42 0.00 2.52
676 701 4.862018 CGTTTCTTGGTTGCTCAAAAAGAA 59.138 37.500 13.38 13.38 35.36 2.52
677 702 5.347364 CGTTTCTTGGTTGCTCAAAAAGAAA 59.653 36.000 19.65 19.65 39.86 2.52
678 703 6.128688 CGTTTCTTGGTTGCTCAAAAAGAAAA 60.129 34.615 22.43 12.58 41.58 2.29
688 713 6.329496 TGCTCAAAAAGAAAATCACGAGTTT 58.671 32.000 0.00 0.00 0.00 2.66
689 714 6.472163 TGCTCAAAAAGAAAATCACGAGTTTC 59.528 34.615 11.05 11.05 43.37 2.78
720 745 0.884704 ACCAGCCAATCACGTCACAC 60.885 55.000 0.00 0.00 0.00 3.82
739 764 1.078426 CAACCTCCATCCCACGGAC 60.078 63.158 0.00 0.00 32.98 4.79
741 766 3.480133 CCTCCATCCCACGGACCC 61.480 72.222 0.00 0.00 32.98 4.46
809 836 2.434336 CCATTCTCTACCCATCCAACGA 59.566 50.000 0.00 0.00 0.00 3.85
819 846 2.446435 CCATCCAACGATCCAAACCTT 58.554 47.619 0.00 0.00 0.00 3.50
824 851 4.513442 TCCAACGATCCAAACCTTATCTG 58.487 43.478 0.00 0.00 0.00 2.90
837 870 0.030705 TTATCTGCCTCCTCCAGCCT 60.031 55.000 0.00 0.00 0.00 4.58
842 875 2.040043 CCTCCTCCAGCCTCCCAT 60.040 66.667 0.00 0.00 0.00 4.00
844 877 1.383664 CTCCTCCAGCCTCCCATCA 60.384 63.158 0.00 0.00 0.00 3.07
882 920 0.526211 GCTTCTCGCCCCGAAAATTT 59.474 50.000 0.00 0.00 34.74 1.82
886 924 0.451783 CTCGCCCCGAAAATTTCCTG 59.548 55.000 0.00 0.00 34.74 3.86
887 925 0.037017 TCGCCCCGAAAATTTCCTGA 59.963 50.000 0.00 0.00 31.06 3.86
888 926 1.102978 CGCCCCGAAAATTTCCTGAT 58.897 50.000 0.00 0.00 0.00 2.90
919 959 4.717280 CACCACTCTCTCCTATTTAACCCT 59.283 45.833 0.00 0.00 0.00 4.34
999 1057 3.646715 CAAACCCCTCCGGCTCCA 61.647 66.667 0.00 0.00 33.26 3.86
1209 1267 3.721706 AAGCTCCCCTTCCAGCGG 61.722 66.667 0.00 0.00 40.84 5.52
1311 1369 4.078516 GCGTACCTGGTCGGGCTT 62.079 66.667 0.63 0.00 36.97 4.35
1443 1501 1.677552 CCGGTCAAGCTACTGGGTT 59.322 57.895 6.60 0.00 41.51 4.11
1473 1556 2.365617 TCCTGTCTGGTGTCTTCTGTTC 59.634 50.000 0.00 0.00 37.07 3.18
1475 1558 1.068588 TGTCTGGTGTCTTCTGTTCGG 59.931 52.381 0.00 0.00 0.00 4.30
1508 1593 2.038426 TGATGTGTCGTCTTGTCCCATT 59.962 45.455 0.00 0.00 0.00 3.16
1510 1595 1.270625 TGTGTCGTCTTGTCCCATTCC 60.271 52.381 0.00 0.00 0.00 3.01
1511 1596 0.323629 TGTCGTCTTGTCCCATTCCC 59.676 55.000 0.00 0.00 0.00 3.97
1512 1597 0.323629 GTCGTCTTGTCCCATTCCCA 59.676 55.000 0.00 0.00 0.00 4.37
1513 1598 1.065418 GTCGTCTTGTCCCATTCCCAT 60.065 52.381 0.00 0.00 0.00 4.00
1519 1604 1.294041 TGTCCCATTCCCATGTAGCA 58.706 50.000 0.00 0.00 0.00 3.49
1557 1642 6.463995 AATGGCAGTGAAAAGTTCAGTTAA 57.536 33.333 0.00 0.00 41.24 2.01
1559 1644 4.201871 TGGCAGTGAAAAGTTCAGTTAACG 60.202 41.667 0.00 0.00 41.24 3.18
1567 1652 3.705043 AGTTCAGTTAACGTCTCGTGT 57.295 42.857 0.00 0.00 43.29 4.49
1617 1704 3.587923 TGCTTTGTGATTTTGCTATGGC 58.412 40.909 0.00 0.00 39.26 4.40
1641 1728 0.736636 TAGTCGGATGTAGCGTGGTG 59.263 55.000 0.00 0.00 0.00 4.17
1642 1729 2.165301 GTCGGATGTAGCGTGGTGC 61.165 63.158 0.00 0.00 46.98 5.01
1665 1752 0.469705 TTGCTGCAGTGATGGGGTTT 60.470 50.000 16.64 0.00 0.00 3.27
1666 1753 1.180456 TGCTGCAGTGATGGGGTTTG 61.180 55.000 16.64 0.00 0.00 2.93
1672 1775 0.112412 AGTGATGGGGTTTGGGTCAC 59.888 55.000 0.00 0.00 39.47 3.67
1692 1795 3.806380 ACAGCATTTTGTGATTTTGCCA 58.194 36.364 0.00 0.00 33.85 4.92
1731 1872 4.657013 TGCATGTTGTTTGTACAGGGATA 58.343 39.130 0.00 0.00 35.28 2.59
1770 1911 1.269778 GGCTTTTGGCTCTGTTGGAAC 60.270 52.381 0.00 0.00 42.31 3.62
1771 1912 1.683385 GCTTTTGGCTCTGTTGGAACT 59.317 47.619 0.00 0.00 38.06 3.01
1772 1913 2.101415 GCTTTTGGCTCTGTTGGAACTT 59.899 45.455 0.00 0.00 38.06 2.66
1773 1914 3.709987 CTTTTGGCTCTGTTGGAACTTG 58.290 45.455 0.00 0.00 0.00 3.16
1774 1915 1.691196 TTGGCTCTGTTGGAACTTGG 58.309 50.000 0.00 0.00 0.00 3.61
1775 1916 0.843309 TGGCTCTGTTGGAACTTGGA 59.157 50.000 0.00 0.00 0.00 3.53
1776 1917 1.214175 TGGCTCTGTTGGAACTTGGAA 59.786 47.619 0.00 0.00 0.00 3.53
1783 1924 4.821805 TCTGTTGGAACTTGGAAGTGAATC 59.178 41.667 0.00 0.00 39.66 2.52
1794 1935 5.756195 TGGAAGTGAATCTGAAGTTTGTG 57.244 39.130 0.00 0.00 0.00 3.33
1869 2120 8.306680 TCTGAACAACTTGTATGTAAGCTTAC 57.693 34.615 26.50 26.50 0.00 2.34
1870 2121 7.929245 TCTGAACAACTTGTATGTAAGCTTACA 59.071 33.333 34.82 34.82 46.55 2.41
1889 2140 6.092533 GCTTACAAAATAATTGGTGCTTGCAT 59.907 34.615 0.00 0.00 0.00 3.96
1907 2158 4.377897 TGCATTGCAATTGACATGTCAAA 58.622 34.783 37.35 24.48 42.39 2.69
1924 2175 5.761003 TGTCAAATGTGCTGTGTTATCTTG 58.239 37.500 0.00 0.00 0.00 3.02
1931 2182 3.624861 GTGCTGTGTTATCTTGCATAGCT 59.375 43.478 12.84 0.00 45.76 3.32
1940 2191 8.283291 GTGTTATCTTGCATAGCTACATTTACC 58.717 37.037 0.00 0.00 0.00 2.85
1958 2209 6.687081 TTTACCGAGTTGTGTTTCTTTCAT 57.313 33.333 0.00 0.00 0.00 2.57
1987 2238 6.892658 TCTTACAGGTTTAACATGCACAAT 57.107 33.333 9.75 0.00 32.34 2.71
2059 2321 2.124570 ATCATCTGTGTGCGGCCC 60.125 61.111 0.00 0.00 0.00 5.80
2150 2412 5.397221 CCAATTGACTGTGTCCATCCTCTAT 60.397 44.000 7.12 0.00 0.00 1.98
2167 2438 4.531854 CTCTATCTGTGAGGAGTCAAGGA 58.468 47.826 0.00 0.00 33.27 3.36
2172 2443 1.133167 TGTGAGGAGTCAAGGACAGGA 60.133 52.381 0.00 0.00 34.60 3.86
2188 2459 3.796764 GGAGAGATTCCAGGCAAGG 57.203 57.895 0.00 0.00 46.01 3.61
2229 2502 1.612462 CCTGCTCTGCTGAAACCATCA 60.612 52.381 0.00 0.00 36.38 3.07
2306 2588 7.600752 GGTAAAGGCATCTTCTCTGATACATAC 59.399 40.741 0.00 0.00 31.82 2.39
2369 2652 7.694388 TTTTTGTGCTAGCAGTAGATATACG 57.306 36.000 20.03 0.00 0.00 3.06
2410 2696 9.857656 ATGATATATTATGTGGACAATCATCCC 57.142 33.333 0.00 0.00 38.06 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.273170 CGAAAAGAAAGTTGTCATGCTTGA 58.727 37.500 0.00 0.00 0.00 3.02
5 6 4.442073 CCGAAAAGAAAGTTGTCATGCTTG 59.558 41.667 0.00 0.00 0.00 4.01
6 7 4.338118 TCCGAAAAGAAAGTTGTCATGCTT 59.662 37.500 0.00 0.00 0.00 3.91
7 8 3.882888 TCCGAAAAGAAAGTTGTCATGCT 59.117 39.130 0.00 0.00 0.00 3.79
8 9 4.223320 TCCGAAAAGAAAGTTGTCATGC 57.777 40.909 0.00 0.00 0.00 4.06
9 10 5.853282 GTCATCCGAAAAGAAAGTTGTCATG 59.147 40.000 0.00 0.00 0.00 3.07
10 11 5.530915 TGTCATCCGAAAAGAAAGTTGTCAT 59.469 36.000 0.00 0.00 0.00 3.06
11 12 4.878971 TGTCATCCGAAAAGAAAGTTGTCA 59.121 37.500 0.00 0.00 0.00 3.58
12 13 5.418310 TGTCATCCGAAAAGAAAGTTGTC 57.582 39.130 0.00 0.00 0.00 3.18
13 14 5.357032 ACTTGTCATCCGAAAAGAAAGTTGT 59.643 36.000 0.00 0.00 38.60 3.32
14 15 5.821204 ACTTGTCATCCGAAAAGAAAGTTG 58.179 37.500 0.00 0.00 38.60 3.16
15 16 6.451064 AACTTGTCATCCGAAAAGAAAGTT 57.549 33.333 0.00 0.00 38.60 2.66
16 17 6.094881 TGAAACTTGTCATCCGAAAAGAAAGT 59.905 34.615 0.00 0.00 38.60 2.66
17 18 6.494842 TGAAACTTGTCATCCGAAAAGAAAG 58.505 36.000 0.00 0.00 38.60 2.62
18 19 6.094881 ACTGAAACTTGTCATCCGAAAAGAAA 59.905 34.615 0.00 0.00 38.60 2.52
19 20 5.588648 ACTGAAACTTGTCATCCGAAAAGAA 59.411 36.000 0.00 0.00 38.60 2.52
20 21 5.123227 ACTGAAACTTGTCATCCGAAAAGA 58.877 37.500 0.00 0.00 38.60 2.52
21 22 5.424121 ACTGAAACTTGTCATCCGAAAAG 57.576 39.130 0.00 0.00 41.62 2.27
22 23 5.828299 AACTGAAACTTGTCATCCGAAAA 57.172 34.783 0.00 0.00 0.00 2.29
23 24 5.588648 AGAAACTGAAACTTGTCATCCGAAA 59.411 36.000 0.00 0.00 0.00 3.46
24 25 5.123227 AGAAACTGAAACTTGTCATCCGAA 58.877 37.500 0.00 0.00 0.00 4.30
25 26 4.703897 AGAAACTGAAACTTGTCATCCGA 58.296 39.130 0.00 0.00 0.00 4.55
26 27 5.424121 AAGAAACTGAAACTTGTCATCCG 57.576 39.130 0.00 0.00 0.00 4.18
27 28 5.444122 CGAAGAAACTGAAACTTGTCATCC 58.556 41.667 0.00 0.00 0.00 3.51
28 29 5.444122 CCGAAGAAACTGAAACTTGTCATC 58.556 41.667 0.00 0.00 0.00 2.92
29 30 4.275936 CCCGAAGAAACTGAAACTTGTCAT 59.724 41.667 0.00 0.00 0.00 3.06
30 31 3.625764 CCCGAAGAAACTGAAACTTGTCA 59.374 43.478 0.00 0.00 0.00 3.58
31 32 3.003378 CCCCGAAGAAACTGAAACTTGTC 59.997 47.826 0.00 0.00 0.00 3.18
32 33 2.949644 CCCCGAAGAAACTGAAACTTGT 59.050 45.455 0.00 0.00 0.00 3.16
33 34 2.949644 ACCCCGAAGAAACTGAAACTTG 59.050 45.455 0.00 0.00 0.00 3.16
34 35 3.292492 ACCCCGAAGAAACTGAAACTT 57.708 42.857 0.00 0.00 0.00 2.66
35 36 3.292492 AACCCCGAAGAAACTGAAACT 57.708 42.857 0.00 0.00 0.00 2.66
36 37 3.129813 ACAAACCCCGAAGAAACTGAAAC 59.870 43.478 0.00 0.00 0.00 2.78
37 38 3.358118 ACAAACCCCGAAGAAACTGAAA 58.642 40.909 0.00 0.00 0.00 2.69
38 39 3.007473 ACAAACCCCGAAGAAACTGAA 57.993 42.857 0.00 0.00 0.00 3.02
39 40 2.721425 ACAAACCCCGAAGAAACTGA 57.279 45.000 0.00 0.00 0.00 3.41
40 41 3.793797 AAACAAACCCCGAAGAAACTG 57.206 42.857 0.00 0.00 0.00 3.16
41 42 4.464951 AGAAAAACAAACCCCGAAGAAACT 59.535 37.500 0.00 0.00 0.00 2.66
42 43 4.751060 AGAAAAACAAACCCCGAAGAAAC 58.249 39.130 0.00 0.00 0.00 2.78
43 44 5.408880 AAGAAAAACAAACCCCGAAGAAA 57.591 34.783 0.00 0.00 0.00 2.52
44 45 5.408880 AAAGAAAAACAAACCCCGAAGAA 57.591 34.783 0.00 0.00 0.00 2.52
45 46 5.408880 AAAAGAAAAACAAACCCCGAAGA 57.591 34.783 0.00 0.00 0.00 2.87
46 47 4.266739 CGAAAAGAAAAACAAACCCCGAAG 59.733 41.667 0.00 0.00 0.00 3.79
47 48 4.174762 CGAAAAGAAAAACAAACCCCGAA 58.825 39.130 0.00 0.00 0.00 4.30
48 49 3.429135 CCGAAAAGAAAAACAAACCCCGA 60.429 43.478 0.00 0.00 0.00 5.14
49 50 2.861335 CCGAAAAGAAAAACAAACCCCG 59.139 45.455 0.00 0.00 0.00 5.73
50 51 4.126208 TCCGAAAAGAAAAACAAACCCC 57.874 40.909 0.00 0.00 0.00 4.95
51 52 5.113383 ACATCCGAAAAGAAAAACAAACCC 58.887 37.500 0.00 0.00 0.00 4.11
52 53 5.808030 TGACATCCGAAAAGAAAAACAAACC 59.192 36.000 0.00 0.00 0.00 3.27
53 54 6.879188 TGACATCCGAAAAGAAAAACAAAC 57.121 33.333 0.00 0.00 0.00 2.93
54 55 7.093992 AGTTGACATCCGAAAAGAAAAACAAA 58.906 30.769 0.00 0.00 0.00 2.83
55 56 6.626302 AGTTGACATCCGAAAAGAAAAACAA 58.374 32.000 0.00 0.00 0.00 2.83
56 57 6.202516 AGTTGACATCCGAAAAGAAAAACA 57.797 33.333 0.00 0.00 0.00 2.83
57 58 7.520119 AAAGTTGACATCCGAAAAGAAAAAC 57.480 32.000 0.00 0.00 0.00 2.43
58 59 8.463607 ACTAAAGTTGACATCCGAAAAGAAAAA 58.536 29.630 0.00 0.00 0.00 1.94
59 60 7.992008 ACTAAAGTTGACATCCGAAAAGAAAA 58.008 30.769 0.00 0.00 0.00 2.29
60 61 7.562454 ACTAAAGTTGACATCCGAAAAGAAA 57.438 32.000 0.00 0.00 0.00 2.52
61 62 7.562454 AACTAAAGTTGACATCCGAAAAGAA 57.438 32.000 0.00 0.00 36.80 2.52
89 90 3.740115 AGCACTATGACACCGACTTTTT 58.260 40.909 0.00 0.00 0.00 1.94
90 91 3.402628 AGCACTATGACACCGACTTTT 57.597 42.857 0.00 0.00 0.00 2.27
91 92 3.244078 TGAAGCACTATGACACCGACTTT 60.244 43.478 0.00 0.00 0.00 2.66
92 93 2.299013 TGAAGCACTATGACACCGACTT 59.701 45.455 0.00 0.00 0.00 3.01
93 94 1.893137 TGAAGCACTATGACACCGACT 59.107 47.619 0.00 0.00 0.00 4.18
94 95 2.363788 TGAAGCACTATGACACCGAC 57.636 50.000 0.00 0.00 0.00 4.79
95 96 2.892374 CATGAAGCACTATGACACCGA 58.108 47.619 0.00 0.00 0.00 4.69
96 97 1.328680 GCATGAAGCACTATGACACCG 59.671 52.381 0.00 0.00 44.79 4.94
97 98 4.245426 ATGGCATGAAGCACTATGACACC 61.245 47.826 0.00 0.00 44.48 4.16
98 99 2.947652 ATGGCATGAAGCACTATGACAC 59.052 45.455 0.00 0.00 44.48 3.67
99 100 3.286329 ATGGCATGAAGCACTATGACA 57.714 42.857 0.00 5.30 45.63 3.58
108 109 0.305922 GCAGACGTATGGCATGAAGC 59.694 55.000 12.80 2.01 44.65 3.86
109 110 0.940126 GGCAGACGTATGGCATGAAG 59.060 55.000 29.13 3.70 44.71 3.02
110 111 3.079131 GGCAGACGTATGGCATGAA 57.921 52.632 29.13 0.00 44.71 2.57
111 112 4.855105 GGCAGACGTATGGCATGA 57.145 55.556 29.13 0.00 44.71 3.07
115 116 2.135933 GATAAGTGGCAGACGTATGGC 58.864 52.381 27.71 27.71 45.50 4.40
116 117 3.452755 TGATAAGTGGCAGACGTATGG 57.547 47.619 12.80 0.00 30.27 2.74
117 118 5.991328 AAATGATAAGTGGCAGACGTATG 57.009 39.130 5.65 5.65 30.27 2.39
118 119 5.296780 CCAAAATGATAAGTGGCAGACGTAT 59.703 40.000 0.00 0.00 32.53 3.06
119 120 4.634004 CCAAAATGATAAGTGGCAGACGTA 59.366 41.667 0.00 0.00 0.00 3.57
120 121 3.440173 CCAAAATGATAAGTGGCAGACGT 59.560 43.478 0.00 0.00 0.00 4.34
121 122 3.181497 CCCAAAATGATAAGTGGCAGACG 60.181 47.826 0.00 0.00 0.00 4.18
122 123 3.763897 ACCCAAAATGATAAGTGGCAGAC 59.236 43.478 0.00 0.00 0.00 3.51
123 124 4.046286 ACCCAAAATGATAAGTGGCAGA 57.954 40.909 0.00 0.00 0.00 4.26
124 125 4.806640 AACCCAAAATGATAAGTGGCAG 57.193 40.909 0.00 0.00 0.00 4.85
125 126 6.865834 AATAACCCAAAATGATAAGTGGCA 57.134 33.333 0.00 0.00 0.00 4.92
126 127 9.830975 AAATAATAACCCAAAATGATAAGTGGC 57.169 29.630 0.00 0.00 0.00 5.01
162 163 1.334869 CCACTTCCATAAGCGGATTGC 59.665 52.381 0.00 0.00 46.98 3.56
163 164 1.334869 GCCACTTCCATAAGCGGATTG 59.665 52.381 0.00 0.00 37.12 2.67
164 165 1.680338 GCCACTTCCATAAGCGGATT 58.320 50.000 0.00 0.00 37.12 3.01
165 166 0.179018 GGCCACTTCCATAAGCGGAT 60.179 55.000 0.00 0.00 37.12 4.18
166 167 1.223487 GGCCACTTCCATAAGCGGA 59.777 57.895 0.00 0.00 37.12 5.54
167 168 0.466189 ATGGCCACTTCCATAAGCGG 60.466 55.000 8.16 0.00 44.60 5.52
168 169 0.664761 CATGGCCACTTCCATAAGCG 59.335 55.000 8.16 0.00 44.63 4.68
169 170 1.767759 ACATGGCCACTTCCATAAGC 58.232 50.000 8.16 0.00 44.63 3.09
170 171 4.806640 AAAACATGGCCACTTCCATAAG 57.193 40.909 8.16 0.00 44.63 1.73
217 218 5.857471 ATTCCAATGGAACATACACCATG 57.143 39.130 18.01 0.00 45.07 3.66
218 219 7.784073 TCAATATTCCAATGGAACATACACCAT 59.216 33.333 18.01 0.34 45.07 3.55
219 220 7.122048 TCAATATTCCAATGGAACATACACCA 58.878 34.615 18.01 0.00 45.07 4.17
220 221 7.581213 TCAATATTCCAATGGAACATACACC 57.419 36.000 18.01 0.00 45.07 4.16
221 222 9.467258 CATTCAATATTCCAATGGAACATACAC 57.533 33.333 18.01 0.00 45.07 2.90
222 223 8.640651 CCATTCAATATTCCAATGGAACATACA 58.359 33.333 18.01 0.00 46.66 2.29
223 224 8.641541 ACCATTCAATATTCCAATGGAACATAC 58.358 33.333 27.98 0.00 46.66 2.39
224 225 8.640651 CACCATTCAATATTCCAATGGAACATA 58.359 33.333 27.98 7.34 46.66 2.29
225 226 7.126115 ACACCATTCAATATTCCAATGGAACAT 59.874 33.333 27.98 8.66 46.66 2.71
226 227 6.440010 ACACCATTCAATATTCCAATGGAACA 59.560 34.615 27.98 6.06 46.66 3.18
227 228 6.877236 ACACCATTCAATATTCCAATGGAAC 58.123 36.000 27.98 0.00 46.66 3.62
228 229 7.179872 TGAACACCATTCAATATTCCAATGGAA 59.820 33.333 27.98 17.95 46.66 3.53
229 230 6.666980 TGAACACCATTCAATATTCCAATGGA 59.333 34.615 27.98 0.00 46.66 3.41
231 232 9.687210 CTATGAACACCATTCAATATTCCAATG 57.313 33.333 8.73 8.73 36.71 2.82
232 233 9.425248 ACTATGAACACCATTCAATATTCCAAT 57.575 29.630 0.00 0.00 36.71 3.16
233 234 8.821686 ACTATGAACACCATTCAATATTCCAA 57.178 30.769 0.00 0.00 36.71 3.53
234 235 8.685427 CAACTATGAACACCATTCAATATTCCA 58.315 33.333 0.00 0.00 36.71 3.53
235 236 8.902806 TCAACTATGAACACCATTCAATATTCC 58.097 33.333 0.00 0.00 36.71 3.01
252 253 6.061022 ACACACCATACCATTCAACTATGA 57.939 37.500 0.00 0.00 0.00 2.15
253 254 8.450578 AATACACACCATACCATTCAACTATG 57.549 34.615 0.00 0.00 0.00 2.23
254 255 8.494433 AGAATACACACCATACCATTCAACTAT 58.506 33.333 0.00 0.00 0.00 2.12
255 256 7.857456 AGAATACACACCATACCATTCAACTA 58.143 34.615 0.00 0.00 0.00 2.24
256 257 6.721318 AGAATACACACCATACCATTCAACT 58.279 36.000 0.00 0.00 0.00 3.16
257 258 6.823689 AGAGAATACACACCATACCATTCAAC 59.176 38.462 0.00 0.00 0.00 3.18
258 259 6.957631 AGAGAATACACACCATACCATTCAA 58.042 36.000 0.00 0.00 0.00 2.69
259 260 6.560003 AGAGAATACACACCATACCATTCA 57.440 37.500 0.00 0.00 0.00 2.57
260 261 8.421784 TCTTAGAGAATACACACCATACCATTC 58.578 37.037 0.00 0.00 0.00 2.67
261 262 8.319057 TCTTAGAGAATACACACCATACCATT 57.681 34.615 0.00 0.00 0.00 3.16
262 263 7.015682 CCTCTTAGAGAATACACACCATACCAT 59.984 40.741 11.32 0.00 0.00 3.55
263 264 6.323996 CCTCTTAGAGAATACACACCATACCA 59.676 42.308 11.32 0.00 0.00 3.25
264 265 6.550108 TCCTCTTAGAGAATACACACCATACC 59.450 42.308 11.32 0.00 0.00 2.73
265 266 7.584122 TCCTCTTAGAGAATACACACCATAC 57.416 40.000 11.32 0.00 0.00 2.39
266 267 8.603898 TTTCCTCTTAGAGAATACACACCATA 57.396 34.615 11.32 0.00 0.00 2.74
267 268 7.496346 TTTCCTCTTAGAGAATACACACCAT 57.504 36.000 11.32 0.00 0.00 3.55
268 269 6.928348 TTTCCTCTTAGAGAATACACACCA 57.072 37.500 11.32 0.00 0.00 4.17
283 284 9.896645 ATGACGATGCATATTATATTTCCTCTT 57.103 29.630 0.00 0.00 0.00 2.85
286 287 9.265901 GCTATGACGATGCATATTATATTTCCT 57.734 33.333 0.00 0.00 30.90 3.36
287 288 9.045223 TGCTATGACGATGCATATTATATTTCC 57.955 33.333 0.00 0.00 30.90 3.13
299 300 3.118775 GGGGTATATGCTATGACGATGCA 60.119 47.826 0.00 0.00 41.13 3.96
300 301 3.118775 TGGGGTATATGCTATGACGATGC 60.119 47.826 0.00 0.00 0.00 3.91
301 302 4.433615 GTGGGGTATATGCTATGACGATG 58.566 47.826 0.00 0.00 0.00 3.84
302 303 3.130516 CGTGGGGTATATGCTATGACGAT 59.869 47.826 0.00 0.00 0.00 3.73
303 304 2.490509 CGTGGGGTATATGCTATGACGA 59.509 50.000 0.00 0.00 0.00 4.20
304 305 2.876091 CGTGGGGTATATGCTATGACG 58.124 52.381 0.00 0.00 0.00 4.35
305 306 2.618053 GCGTGGGGTATATGCTATGAC 58.382 52.381 0.00 0.00 0.00 3.06
306 307 1.553248 GGCGTGGGGTATATGCTATGA 59.447 52.381 0.00 0.00 0.00 2.15
307 308 1.277842 TGGCGTGGGGTATATGCTATG 59.722 52.381 0.00 0.00 0.00 2.23
308 309 1.278127 GTGGCGTGGGGTATATGCTAT 59.722 52.381 0.00 0.00 0.00 2.97
309 310 0.682852 GTGGCGTGGGGTATATGCTA 59.317 55.000 0.00 0.00 0.00 3.49
310 311 1.054406 AGTGGCGTGGGGTATATGCT 61.054 55.000 0.00 0.00 0.00 3.79
311 312 0.602905 GAGTGGCGTGGGGTATATGC 60.603 60.000 0.00 0.00 0.00 3.14
312 313 0.756294 TGAGTGGCGTGGGGTATATG 59.244 55.000 0.00 0.00 0.00 1.78
313 314 0.756903 GTGAGTGGCGTGGGGTATAT 59.243 55.000 0.00 0.00 0.00 0.86
314 315 1.669049 CGTGAGTGGCGTGGGGTATA 61.669 60.000 0.00 0.00 0.00 1.47
315 316 2.987125 GTGAGTGGCGTGGGGTAT 59.013 61.111 0.00 0.00 0.00 2.73
316 317 3.687102 CGTGAGTGGCGTGGGGTA 61.687 66.667 0.00 0.00 0.00 3.69
323 324 4.436998 GAGGGTCCGTGAGTGGCG 62.437 72.222 0.00 0.00 0.00 5.69
324 325 1.255667 TAAGAGGGTCCGTGAGTGGC 61.256 60.000 0.00 0.00 0.00 5.01
325 326 1.067071 GTTAAGAGGGTCCGTGAGTGG 60.067 57.143 0.00 0.00 0.00 4.00
326 327 1.616865 TGTTAAGAGGGTCCGTGAGTG 59.383 52.381 0.00 0.00 0.00 3.51
327 328 2.005370 TGTTAAGAGGGTCCGTGAGT 57.995 50.000 0.00 0.00 0.00 3.41
328 329 3.262420 CATTGTTAAGAGGGTCCGTGAG 58.738 50.000 0.00 0.00 0.00 3.51
329 330 2.027561 CCATTGTTAAGAGGGTCCGTGA 60.028 50.000 0.00 0.00 0.00 4.35
330 331 2.356135 CCATTGTTAAGAGGGTCCGTG 58.644 52.381 0.00 0.00 0.00 4.94
331 332 1.280998 CCCATTGTTAAGAGGGTCCGT 59.719 52.381 0.00 0.00 36.52 4.69
332 333 2.038387 CCCATTGTTAAGAGGGTCCG 57.962 55.000 0.00 0.00 36.52 4.79
336 337 4.141688 GGTCTCTACCCATTGTTAAGAGGG 60.142 50.000 0.00 0.00 46.96 4.30
337 338 4.441634 CGGTCTCTACCCATTGTTAAGAGG 60.442 50.000 0.00 0.00 43.54 3.69
338 339 4.401519 TCGGTCTCTACCCATTGTTAAGAG 59.598 45.833 0.00 0.00 43.54 2.85
339 340 4.346730 TCGGTCTCTACCCATTGTTAAGA 58.653 43.478 0.00 0.00 43.54 2.10
340 341 4.730949 TCGGTCTCTACCCATTGTTAAG 57.269 45.455 0.00 0.00 43.54 1.85
341 342 4.468510 ACATCGGTCTCTACCCATTGTTAA 59.531 41.667 0.00 0.00 43.54 2.01
342 343 4.028131 ACATCGGTCTCTACCCATTGTTA 58.972 43.478 0.00 0.00 43.54 2.41
343 344 2.838202 ACATCGGTCTCTACCCATTGTT 59.162 45.455 0.00 0.00 43.54 2.83
344 345 2.467880 ACATCGGTCTCTACCCATTGT 58.532 47.619 0.00 0.00 43.54 2.71
345 346 3.543680 AACATCGGTCTCTACCCATTG 57.456 47.619 0.00 0.00 43.54 2.82
346 347 4.101119 CCTAAACATCGGTCTCTACCCATT 59.899 45.833 0.00 0.00 43.54 3.16
347 348 3.641906 CCTAAACATCGGTCTCTACCCAT 59.358 47.826 0.00 0.00 43.54 4.00
348 349 3.028850 CCTAAACATCGGTCTCTACCCA 58.971 50.000 0.00 0.00 43.54 4.51
349 350 2.223994 GCCTAAACATCGGTCTCTACCC 60.224 54.545 0.00 0.00 43.54 3.69
350 351 2.223994 GGCCTAAACATCGGTCTCTACC 60.224 54.545 0.00 0.00 42.95 3.18
351 352 2.429610 TGGCCTAAACATCGGTCTCTAC 59.570 50.000 3.32 0.00 0.00 2.59
352 353 2.693591 CTGGCCTAAACATCGGTCTCTA 59.306 50.000 3.32 0.00 0.00 2.43
353 354 1.482593 CTGGCCTAAACATCGGTCTCT 59.517 52.381 3.32 0.00 0.00 3.10
354 355 1.473434 CCTGGCCTAAACATCGGTCTC 60.473 57.143 3.32 0.00 0.00 3.36
359 360 2.107950 TGAACCTGGCCTAAACATCG 57.892 50.000 3.32 0.00 0.00 3.84
370 371 3.888930 TGAAAAGTAAGGCTTGAACCTGG 59.111 43.478 10.69 0.00 39.93 4.45
384 385 2.038557 GGGCTCTGGACTGTGAAAAGTA 59.961 50.000 0.00 0.00 0.00 2.24
457 460 8.547894 CAATTAAGTAACGCTGCATCTTACATA 58.452 33.333 0.00 0.00 0.00 2.29
463 466 3.689161 TGCAATTAAGTAACGCTGCATCT 59.311 39.130 0.00 0.00 35.02 2.90
508 511 7.767198 ACAGATAAATGCCCATTTTCTCATTTG 59.233 33.333 11.08 7.18 40.99 2.32
513 516 6.705863 AGACAGATAAATGCCCATTTTCTC 57.294 37.500 11.08 8.92 40.99 2.87
522 525 4.793201 ACCCCTAAAGACAGATAAATGCC 58.207 43.478 0.00 0.00 0.00 4.40
533 536 1.003464 TGCCCGTTTACCCCTAAAGAC 59.997 52.381 0.00 0.00 0.00 3.01
535 538 2.430248 ATGCCCGTTTACCCCTAAAG 57.570 50.000 0.00 0.00 0.00 1.85
536 539 2.903375 AATGCCCGTTTACCCCTAAA 57.097 45.000 0.00 0.00 0.00 1.85
537 540 2.903375 AAATGCCCGTTTACCCCTAA 57.097 45.000 0.00 0.00 0.00 2.69
548 551 1.545582 CATGGCCCTTATAAATGCCCG 59.454 52.381 17.78 8.80 43.35 6.13
559 562 3.728373 GTCCGGTCCATGGCCCTT 61.728 66.667 10.72 0.00 0.00 3.95
580 583 1.187567 AATGCAAAGCTGGGACCCAC 61.188 55.000 9.95 7.07 0.00 4.61
635 639 2.676471 ATTGGCTGTTCACGGGCC 60.676 61.111 9.69 0.00 46.13 5.80
636 640 2.877691 GATTGGCTGTTCACGGGC 59.122 61.111 5.38 5.38 46.78 6.13
637 641 1.234615 AACGATTGGCTGTTCACGGG 61.235 55.000 0.00 0.00 0.00 5.28
638 642 0.591170 AAACGATTGGCTGTTCACGG 59.409 50.000 0.00 0.00 0.00 4.94
639 643 1.531149 AGAAACGATTGGCTGTTCACG 59.469 47.619 0.00 0.00 0.00 4.35
642 646 2.933769 CCAAGAAACGATTGGCTGTTC 58.066 47.619 0.00 0.00 40.74 3.18
697 722 2.028130 TGACGTGATTGGCTGGTTTTT 58.972 42.857 0.00 0.00 0.00 1.94
699 724 0.951558 GTGACGTGATTGGCTGGTTT 59.048 50.000 0.00 0.00 0.00 3.27
700 725 0.179032 TGTGACGTGATTGGCTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
701 726 0.884704 GTGTGACGTGATTGGCTGGT 60.885 55.000 0.00 0.00 0.00 4.00
720 745 2.272146 CCGTGGGATGGAGGTTGG 59.728 66.667 0.00 0.00 0.00 3.77
765 791 1.933307 GATGGGATGGGTTTCCGGGT 61.933 60.000 0.00 0.00 36.58 5.28
809 836 3.126453 AGGAGGCAGATAAGGTTTGGAT 58.874 45.455 0.00 0.00 0.00 3.41
819 846 4.302622 GGCTGGAGGAGGCAGATA 57.697 61.111 0.00 0.00 46.77 1.98
837 870 3.006728 GTCGGGGTGGTGATGGGA 61.007 66.667 0.00 0.00 0.00 4.37
886 924 4.176752 GAGTGGTGGGCGGGGATC 62.177 72.222 0.00 0.00 0.00 3.36
887 925 4.741239 AGAGTGGTGGGCGGGGAT 62.741 66.667 0.00 0.00 0.00 3.85
900 938 3.637694 GCGAGGGTTAAATAGGAGAGAGT 59.362 47.826 0.00 0.00 0.00 3.24
906 946 0.105408 GCGGCGAGGGTTAAATAGGA 59.895 55.000 12.98 0.00 0.00 2.94
1311 1369 0.834612 ACAGGTTGGTGTCCTCGAAA 59.165 50.000 0.00 0.00 32.37 3.46
1434 1492 1.641577 GAAGCGCTACAACCCAGTAG 58.358 55.000 12.05 0.00 43.39 2.57
1443 1501 1.185618 ACCAGACAGGAAGCGCTACA 61.186 55.000 12.05 0.00 41.22 2.74
1449 1507 1.346068 AGAAGACACCAGACAGGAAGC 59.654 52.381 0.00 0.00 41.22 3.86
1450 1508 2.366916 ACAGAAGACACCAGACAGGAAG 59.633 50.000 0.00 0.00 41.22 3.46
1473 1556 3.270027 ACACATCATATCAACACCACCG 58.730 45.455 0.00 0.00 0.00 4.94
1475 1558 3.932710 ACGACACATCATATCAACACCAC 59.067 43.478 0.00 0.00 0.00 4.16
1519 1604 4.161565 ACTGCCATTTCATTTCAGCATCAT 59.838 37.500 0.00 0.00 0.00 2.45
1528 1613 6.347696 TGAACTTTTCACTGCCATTTCATTT 58.652 32.000 0.00 0.00 34.08 2.32
1557 1642 4.374399 AGGACAAAATTAACACGAGACGT 58.626 39.130 0.00 0.00 42.36 4.34
1559 1644 5.465724 ACAGAGGACAAAATTAACACGAGAC 59.534 40.000 0.00 0.00 0.00 3.36
1567 1652 5.068987 AGCAGCAAACAGAGGACAAAATTAA 59.931 36.000 0.00 0.00 0.00 1.40
1617 1704 2.278094 CACGCTACATCCGACTAAAACG 59.722 50.000 0.00 0.00 0.00 3.60
1641 1728 1.441515 CATCACTGCAGCAACACGC 60.442 57.895 15.27 0.00 42.91 5.34
1642 1729 1.208358 CCATCACTGCAGCAACACG 59.792 57.895 15.27 0.00 0.00 4.49
1643 1730 1.582968 CCCATCACTGCAGCAACAC 59.417 57.895 15.27 0.00 0.00 3.32
1644 1731 1.604308 CCCCATCACTGCAGCAACA 60.604 57.895 15.27 0.00 0.00 3.33
1645 1732 1.181098 AACCCCATCACTGCAGCAAC 61.181 55.000 15.27 0.00 0.00 4.17
1646 1733 0.469705 AAACCCCATCACTGCAGCAA 60.470 50.000 15.27 1.62 0.00 3.91
1647 1734 1.153524 AAACCCCATCACTGCAGCA 59.846 52.632 15.27 0.00 0.00 4.41
1672 1775 4.214545 ACATGGCAAAATCACAAAATGCTG 59.785 37.500 0.00 0.00 37.20 4.41
1692 1795 7.874016 ACAACATGCAAAATTACTGAATCACAT 59.126 29.630 0.00 0.00 0.00 3.21
1770 1911 6.183360 ACACAAACTTCAGATTCACTTCCAAG 60.183 38.462 0.00 0.00 0.00 3.61
1771 1912 5.652014 ACACAAACTTCAGATTCACTTCCAA 59.348 36.000 0.00 0.00 0.00 3.53
1772 1913 5.066375 CACACAAACTTCAGATTCACTTCCA 59.934 40.000 0.00 0.00 0.00 3.53
1773 1914 5.506317 CCACACAAACTTCAGATTCACTTCC 60.506 44.000 0.00 0.00 0.00 3.46
1774 1915 5.296780 TCCACACAAACTTCAGATTCACTTC 59.703 40.000 0.00 0.00 0.00 3.01
1775 1916 5.066505 GTCCACACAAACTTCAGATTCACTT 59.933 40.000 0.00 0.00 0.00 3.16
1776 1917 4.576463 GTCCACACAAACTTCAGATTCACT 59.424 41.667 0.00 0.00 0.00 3.41
1783 1924 2.874701 CCTCTGTCCACACAAACTTCAG 59.125 50.000 0.00 0.00 29.82 3.02
1794 1935 3.477210 AGAGAACAAACCTCTGTCCAC 57.523 47.619 0.00 0.00 39.36 4.02
1844 2072 7.929245 TGTAAGCTTACATACAAGTTGTTCAGA 59.071 33.333 30.81 6.27 38.64 3.27
1869 2120 5.090083 GCAATGCAAGCACCAATTATTTTG 58.910 37.500 0.00 0.00 0.00 2.44
1870 2121 4.760715 TGCAATGCAAGCACCAATTATTTT 59.239 33.333 5.01 0.00 37.02 1.82
1907 2158 4.036027 GCTATGCAAGATAACACAGCACAT 59.964 41.667 0.00 0.00 38.12 3.21
1912 2163 7.488187 AATGTAGCTATGCAAGATAACACAG 57.512 36.000 0.00 0.00 0.00 3.66
1924 2175 4.809426 ACAACTCGGTAAATGTAGCTATGC 59.191 41.667 0.00 0.00 0.00 3.14
1931 2182 7.280428 TGAAAGAAACACAACTCGGTAAATGTA 59.720 33.333 0.00 0.00 0.00 2.29
1940 2191 7.645340 AGAAATCAATGAAAGAAACACAACTCG 59.355 33.333 0.00 0.00 0.00 4.18
1958 2209 7.865385 GTGCATGTTAAACCTGTAAGAAATCAA 59.135 33.333 0.00 0.00 34.07 2.57
1981 2232 0.388134 CACCTGAGCTTGCATTGTGC 60.388 55.000 0.00 0.00 45.29 4.57
1987 2238 1.526686 CACACCACCTGAGCTTGCA 60.527 57.895 0.00 0.00 0.00 4.08
2150 2412 2.242926 CTGTCCTTGACTCCTCACAGA 58.757 52.381 0.00 0.00 33.15 3.41
2167 2438 1.558756 CTTGCCTGGAATCTCTCCTGT 59.441 52.381 0.00 0.00 45.64 4.00
2172 2443 2.504996 CTCTTCCTTGCCTGGAATCTCT 59.495 50.000 0.00 0.00 44.17 3.10
2186 2457 1.274126 CCCCTTTCCTCTCCTCTTCCT 60.274 57.143 0.00 0.00 0.00 3.36
2188 2459 1.959710 ACCCCTTTCCTCTCCTCTTC 58.040 55.000 0.00 0.00 0.00 2.87
2190 2461 1.959710 GAACCCCTTTCCTCTCCTCT 58.040 55.000 0.00 0.00 0.00 3.69
2229 2502 3.302344 GTGCCACATTTGCCCGGT 61.302 61.111 0.00 0.00 0.00 5.28
2306 2588 2.225019 ACAGCATGAAAGACAAAGCTCG 59.775 45.455 0.00 0.00 40.26 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.