Multiple sequence alignment - TraesCS7D01G096900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G096900 | chr7D | 100.000 | 2616 | 0 | 0 | 1 | 2616 | 58767356 | 58769971 | 0.000000e+00 | 4831.0 |
1 | TraesCS7D01G096900 | chr7D | 85.521 | 739 | 50 | 33 | 778 | 1485 | 58863931 | 58863219 | 0.000000e+00 | 719.0 |
2 | TraesCS7D01G096900 | chr7D | 96.209 | 422 | 16 | 0 | 1063 | 1484 | 73117139 | 73116718 | 0.000000e+00 | 691.0 |
3 | TraesCS7D01G096900 | chr4A | 89.286 | 980 | 72 | 15 | 771 | 1735 | 675854659 | 675855620 | 0.000000e+00 | 1197.0 |
4 | TraesCS7D01G096900 | chr4A | 87.580 | 942 | 46 | 29 | 1709 | 2616 | 675855632 | 675856536 | 0.000000e+00 | 1026.0 |
5 | TraesCS7D01G096900 | chr4A | 78.895 | 507 | 56 | 22 | 199 | 681 | 675854101 | 675854580 | 1.970000e-76 | 296.0 |
6 | TraesCS7D01G096900 | chr4A | 86.631 | 187 | 21 | 4 | 17 | 200 | 675853880 | 675854065 | 1.230000e-48 | 204.0 |
7 | TraesCS7D01G096900 | chr7A | 93.909 | 591 | 29 | 3 | 967 | 1554 | 63117624 | 63118210 | 0.000000e+00 | 885.0 |
8 | TraesCS7D01G096900 | chr7A | 87.278 | 731 | 52 | 22 | 778 | 1485 | 63427883 | 63427171 | 0.000000e+00 | 797.0 |
9 | TraesCS7D01G096900 | chr7A | 89.537 | 583 | 38 | 12 | 909 | 1485 | 63398899 | 63398334 | 0.000000e+00 | 717.0 |
10 | TraesCS7D01G096900 | chr7A | 90.698 | 129 | 12 | 0 | 778 | 906 | 63117059 | 63117187 | 3.460000e-39 | 172.0 |
11 | TraesCS7D01G096900 | chr5B | 85.694 | 713 | 51 | 31 | 803 | 1485 | 339101210 | 339100519 | 0.000000e+00 | 704.0 |
12 | TraesCS7D01G096900 | chr5D | 92.723 | 481 | 22 | 8 | 1005 | 1485 | 298123725 | 298124192 | 0.000000e+00 | 682.0 |
13 | TraesCS7D01G096900 | chrUn | 92.593 | 459 | 28 | 6 | 1028 | 1484 | 82565903 | 82566357 | 0.000000e+00 | 654.0 |
14 | TraesCS7D01G096900 | chrUn | 88.670 | 406 | 29 | 9 | 771 | 1172 | 468331401 | 468331793 | 1.820000e-131 | 479.0 |
15 | TraesCS7D01G096900 | chr1D | 93.237 | 414 | 28 | 0 | 1068 | 1481 | 369925929 | 369925516 | 6.190000e-171 | 610.0 |
16 | TraesCS7D01G096900 | chr1A | 78.571 | 112 | 19 | 4 | 782 | 891 | 468599491 | 468599383 | 4.670000e-08 | 69.4 |
17 | TraesCS7D01G096900 | chr5A | 90.244 | 41 | 3 | 1 | 583 | 623 | 378273265 | 378273226 | 5.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G096900 | chr7D | 58767356 | 58769971 | 2615 | False | 4831.00 | 4831 | 100.0000 | 1 | 2616 | 1 | chr7D.!!$F1 | 2615 |
1 | TraesCS7D01G096900 | chr7D | 58863219 | 58863931 | 712 | True | 719.00 | 719 | 85.5210 | 778 | 1485 | 1 | chr7D.!!$R1 | 707 |
2 | TraesCS7D01G096900 | chr4A | 675853880 | 675856536 | 2656 | False | 680.75 | 1197 | 85.5980 | 17 | 2616 | 4 | chr4A.!!$F1 | 2599 |
3 | TraesCS7D01G096900 | chr7A | 63427171 | 63427883 | 712 | True | 797.00 | 797 | 87.2780 | 778 | 1485 | 1 | chr7A.!!$R2 | 707 |
4 | TraesCS7D01G096900 | chr7A | 63398334 | 63398899 | 565 | True | 717.00 | 717 | 89.5370 | 909 | 1485 | 1 | chr7A.!!$R1 | 576 |
5 | TraesCS7D01G096900 | chr7A | 63117059 | 63118210 | 1151 | False | 528.50 | 885 | 92.3035 | 778 | 1554 | 2 | chr7A.!!$F1 | 776 |
6 | TraesCS7D01G096900 | chr5B | 339100519 | 339101210 | 691 | True | 704.00 | 704 | 85.6940 | 803 | 1485 | 1 | chr5B.!!$R1 | 682 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
263 | 313 | 0.109272 | TCCATGACGAAGCACGAGAC | 60.109 | 55.0 | 10.05 | 2.8 | 45.77 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2212 | 2755 | 0.035317 | GAGACACCCAGCACACATCA | 59.965 | 55.0 | 0.0 | 0.0 | 0.0 | 3.07 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 2.396590 | TCATGTTTCCTTAGGCCGTC | 57.603 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
55 | 56 | 9.855021 | ACTTTATTCATAAAACGGGATGAAAAG | 57.145 | 29.630 | 1.76 | 4.96 | 43.39 | 2.27 |
60 | 61 | 8.568676 | TTCATAAAACGGGATGAAAAGATGTA | 57.431 | 30.769 | 0.00 | 0.00 | 38.73 | 2.29 |
65 | 66 | 6.683974 | AACGGGATGAAAAGATGTATTGAG | 57.316 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 69 | 6.884295 | ACGGGATGAAAAGATGTATTGAGAAA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
70 | 71 | 8.408601 | CGGGATGAAAAGATGTATTGAGAAAAT | 58.591 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
91 | 95 | 7.948034 | AAATTATCTACTATCTCCTCCTCCG | 57.052 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
92 | 96 | 6.645884 | ATTATCTACTATCTCCTCCTCCGT | 57.354 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
102 | 106 | 3.024547 | CTCCTCCTCCGTTAGAACATGA | 58.975 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
109 | 113 | 6.103997 | TCCTCCGTTAGAACATGAAACATAC | 58.896 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
142 | 146 | 1.867233 | GCACATGTATGACGGGACATC | 59.133 | 52.381 | 0.00 | 0.00 | 34.01 | 3.06 |
154 | 158 | 4.466370 | TGACGGGACATCACTATCTTCTTT | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
155 | 159 | 5.012328 | ACGGGACATCACTATCTTCTTTC | 57.988 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
156 | 160 | 4.712337 | ACGGGACATCACTATCTTCTTTCT | 59.288 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
158 | 162 | 6.380274 | ACGGGACATCACTATCTTCTTTCTAA | 59.620 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
159 | 163 | 7.070074 | ACGGGACATCACTATCTTCTTTCTAAT | 59.930 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
220 | 261 | 2.370189 | GCTATCCTAGAACAGGGCATGT | 59.630 | 50.000 | 0.00 | 0.00 | 45.58 | 3.21 |
224 | 265 | 2.435805 | TCCTAGAACAGGGCATGTCATC | 59.564 | 50.000 | 4.81 | 0.00 | 45.58 | 2.92 |
240 | 290 | 6.624423 | GCATGTCATCCCTATACATCATTTGC | 60.624 | 42.308 | 0.00 | 0.00 | 31.60 | 3.68 |
263 | 313 | 0.109272 | TCCATGACGAAGCACGAGAC | 60.109 | 55.000 | 10.05 | 2.80 | 45.77 | 3.36 |
264 | 314 | 0.388520 | CCATGACGAAGCACGAGACA | 60.389 | 55.000 | 10.05 | 7.42 | 45.77 | 3.41 |
265 | 315 | 0.710567 | CATGACGAAGCACGAGACAC | 59.289 | 55.000 | 10.05 | 0.00 | 45.77 | 3.67 |
266 | 316 | 0.598562 | ATGACGAAGCACGAGACACT | 59.401 | 50.000 | 10.05 | 0.00 | 45.77 | 3.55 |
267 | 317 | 0.384309 | TGACGAAGCACGAGACACTT | 59.616 | 50.000 | 10.05 | 0.00 | 45.77 | 3.16 |
268 | 318 | 1.605232 | TGACGAAGCACGAGACACTTA | 59.395 | 47.619 | 10.05 | 0.00 | 45.77 | 2.24 |
269 | 319 | 2.243407 | GACGAAGCACGAGACACTTAG | 58.757 | 52.381 | 10.05 | 0.00 | 45.77 | 2.18 |
270 | 320 | 0.985549 | CGAAGCACGAGACACTTAGC | 59.014 | 55.000 | 0.00 | 0.00 | 45.77 | 3.09 |
278 | 328 | 1.736126 | CGAGACACTTAGCTCGTACCA | 59.264 | 52.381 | 0.00 | 0.00 | 46.43 | 3.25 |
279 | 329 | 2.475852 | CGAGACACTTAGCTCGTACCAC | 60.476 | 54.545 | 0.00 | 0.00 | 46.43 | 4.16 |
284 | 334 | 3.181503 | ACACTTAGCTCGTACCACGTATG | 60.182 | 47.826 | 0.00 | 0.00 | 43.14 | 2.39 |
288 | 338 | 3.079960 | AGCTCGTACCACGTATGAATG | 57.920 | 47.619 | 0.00 | 0.00 | 43.14 | 2.67 |
296 | 346 | 7.034397 | TCGTACCACGTATGAATGTTCATTTA | 58.966 | 34.615 | 12.95 | 0.00 | 42.74 | 1.40 |
354 | 405 | 3.678056 | ATACAACTGCGTCCAAAGAGA | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.10 |
389 | 448 | 3.564225 | GGACACTCAAGGACGAACAATTT | 59.436 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
390 | 449 | 4.319549 | GGACACTCAAGGACGAACAATTTC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
401 | 460 | 2.244695 | GAACAATTTCGGGGTCCCTTT | 58.755 | 47.619 | 8.15 | 0.00 | 0.00 | 3.11 |
404 | 463 | 2.225267 | ACAATTTCGGGGTCCCTTTGAT | 60.225 | 45.455 | 8.15 | 0.00 | 0.00 | 2.57 |
408 | 467 | 0.610785 | TCGGGGTCCCTTTGATTTGC | 60.611 | 55.000 | 8.15 | 0.00 | 0.00 | 3.68 |
410 | 469 | 0.897621 | GGGGTCCCTTTGATTTGCAG | 59.102 | 55.000 | 8.15 | 0.00 | 0.00 | 4.41 |
411 | 470 | 1.549950 | GGGGTCCCTTTGATTTGCAGA | 60.550 | 52.381 | 8.15 | 0.00 | 0.00 | 4.26 |
412 | 471 | 2.247358 | GGGTCCCTTTGATTTGCAGAA | 58.753 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
418 | 477 | 6.293571 | GGTCCCTTTGATTTGCAGAATTTTTG | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
429 | 488 | 8.954950 | TTTGCAGAATTTTTGAAATGTAGGAA | 57.045 | 26.923 | 0.00 | 0.00 | 0.00 | 3.36 |
466 | 530 | 6.594788 | AGATTAAAGTGCCATGTCATGTTT | 57.405 | 33.333 | 11.84 | 7.95 | 0.00 | 2.83 |
469 | 533 | 8.752187 | AGATTAAAGTGCCATGTCATGTTTAAT | 58.248 | 29.630 | 20.79 | 20.79 | 34.35 | 1.40 |
472 | 536 | 3.701040 | AGTGCCATGTCATGTTTAATCCC | 59.299 | 43.478 | 11.84 | 0.00 | 0.00 | 3.85 |
473 | 537 | 2.687425 | TGCCATGTCATGTTTAATCCCG | 59.313 | 45.455 | 11.84 | 0.00 | 0.00 | 5.14 |
475 | 539 | 2.286950 | CCATGTCATGTTTAATCCCGCG | 60.287 | 50.000 | 11.84 | 0.00 | 0.00 | 6.46 |
477 | 541 | 2.701107 | TGTCATGTTTAATCCCGCGAA | 58.299 | 42.857 | 8.23 | 0.00 | 0.00 | 4.70 |
478 | 542 | 2.675844 | TGTCATGTTTAATCCCGCGAAG | 59.324 | 45.455 | 8.23 | 0.00 | 0.00 | 3.79 |
498 | 562 | 2.293170 | GCTAGTGAGCCCCAAGAATTC | 58.707 | 52.381 | 0.00 | 0.00 | 43.49 | 2.17 |
499 | 563 | 2.924421 | CTAGTGAGCCCCAAGAATTCC | 58.076 | 52.381 | 0.65 | 0.00 | 0.00 | 3.01 |
503 | 567 | 0.253327 | GAGCCCCAAGAATTCCGAGT | 59.747 | 55.000 | 0.65 | 0.00 | 0.00 | 4.18 |
522 | 586 | 5.817616 | GAGTATTCGACGTCACAGAAAAA | 57.182 | 39.130 | 17.16 | 1.78 | 0.00 | 1.94 |
553 | 617 | 8.576442 | AGACATTGTATAAAAAGGTTTGAGTGG | 58.424 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
584 | 648 | 8.956446 | TTTTTCCCTCTGAAATAGAAAATCCT | 57.044 | 30.769 | 0.00 | 0.00 | 42.38 | 3.24 |
600 | 664 | 8.863872 | AGAAAATCCTAAAAATTCTCGAAGGA | 57.136 | 30.769 | 0.92 | 0.92 | 37.52 | 3.36 |
633 | 697 | 7.557719 | TCCTCCAAAATTCATATGAGGTTTCTC | 59.442 | 37.037 | 14.71 | 0.00 | 40.36 | 2.87 |
635 | 699 | 8.284945 | TCCAAAATTCATATGAGGTTTCTCTG | 57.715 | 34.615 | 14.71 | 11.00 | 40.58 | 3.35 |
638 | 702 | 9.947669 | CAAAATTCATATGAGGTTTCTCTGATC | 57.052 | 33.333 | 14.71 | 0.00 | 40.58 | 2.92 |
644 | 708 | 9.690913 | TCATATGAGGTTTCTCTGATCAAAATT | 57.309 | 29.630 | 0.00 | 0.00 | 40.58 | 1.82 |
645 | 709 | 9.947669 | CATATGAGGTTTCTCTGATCAAAATTC | 57.052 | 33.333 | 0.00 | 0.00 | 40.58 | 2.17 |
646 | 710 | 6.486253 | TGAGGTTTCTCTGATCAAAATTCG | 57.514 | 37.500 | 0.00 | 0.00 | 40.58 | 3.34 |
647 | 711 | 5.997746 | TGAGGTTTCTCTGATCAAAATTCGT | 59.002 | 36.000 | 0.00 | 0.00 | 40.58 | 3.85 |
648 | 712 | 6.147821 | TGAGGTTTCTCTGATCAAAATTCGTC | 59.852 | 38.462 | 0.00 | 0.00 | 40.58 | 4.20 |
649 | 713 | 6.234177 | AGGTTTCTCTGATCAAAATTCGTCT | 58.766 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
650 | 714 | 6.148480 | AGGTTTCTCTGATCAAAATTCGTCTG | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
651 | 715 | 5.536554 | TTCTCTGATCAAAATTCGTCTGC | 57.463 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
652 | 716 | 3.614176 | TCTCTGATCAAAATTCGTCTGCG | 59.386 | 43.478 | 0.00 | 0.00 | 39.92 | 5.18 |
653 | 717 | 3.584834 | TCTGATCAAAATTCGTCTGCGA | 58.415 | 40.909 | 0.00 | 0.00 | 46.36 | 5.10 |
677 | 741 | 4.935352 | TTTCCCCACAGAACTGAATTTG | 57.065 | 40.909 | 8.87 | 0.00 | 0.00 | 2.32 |
681 | 745 | 3.191371 | CCCCACAGAACTGAATTTGCTAC | 59.809 | 47.826 | 8.87 | 0.00 | 0.00 | 3.58 |
683 | 747 | 3.498397 | CCACAGAACTGAATTTGCTACGT | 59.502 | 43.478 | 8.87 | 0.00 | 0.00 | 3.57 |
684 | 748 | 4.688879 | CCACAGAACTGAATTTGCTACGTA | 59.311 | 41.667 | 8.87 | 0.00 | 0.00 | 3.57 |
685 | 749 | 5.389516 | CCACAGAACTGAATTTGCTACGTAC | 60.390 | 44.000 | 8.87 | 0.00 | 0.00 | 3.67 |
686 | 750 | 4.689345 | ACAGAACTGAATTTGCTACGTACC | 59.311 | 41.667 | 8.87 | 0.00 | 0.00 | 3.34 |
688 | 752 | 2.613691 | ACTGAATTTGCTACGTACCCG | 58.386 | 47.619 | 0.00 | 0.00 | 40.83 | 5.28 |
715 | 779 | 6.684609 | AAAAATAAAAATGAACGCGTCCTC | 57.315 | 33.333 | 14.44 | 8.36 | 0.00 | 3.71 |
716 | 780 | 3.651562 | ATAAAAATGAACGCGTCCTCG | 57.348 | 42.857 | 14.44 | 0.00 | 40.37 | 4.63 |
726 | 790 | 2.104331 | CGTCCTCGCGCAATACCT | 59.896 | 61.111 | 8.75 | 0.00 | 0.00 | 3.08 |
761 | 825 | 3.267597 | AAACGCGCCAGCCAATGAC | 62.268 | 57.895 | 5.73 | 0.00 | 41.18 | 3.06 |
767 | 831 | 3.057548 | CCAGCCAATGACAGCGCA | 61.058 | 61.111 | 11.47 | 0.00 | 0.00 | 6.09 |
770 | 834 | 4.487412 | GCCAATGACAGCGCAGGC | 62.487 | 66.667 | 11.47 | 3.55 | 40.37 | 4.85 |
773 | 837 | 3.058160 | AATGACAGCGCAGGCACC | 61.058 | 61.111 | 11.83 | 0.00 | 43.41 | 5.01 |
774 | 838 | 3.557903 | AATGACAGCGCAGGCACCT | 62.558 | 57.895 | 11.83 | 0.00 | 43.41 | 4.00 |
799 | 895 | 1.003580 | AGCCAATCACGTCACAGGAAT | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
809 | 905 | 1.149174 | CACAGGAATCCCCATCCCG | 59.851 | 63.158 | 0.00 | 0.00 | 37.71 | 5.14 |
873 | 971 | 1.760086 | CAGCCGTCCATCTCCCTCT | 60.760 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
892 | 990 | 0.608035 | TGATCCAACGCCCCAAACTC | 60.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
931 | 1050 | 1.984026 | CGCCTTCTGCCCCCAAAAT | 60.984 | 57.895 | 0.00 | 0.00 | 36.24 | 1.82 |
995 | 1469 | 4.742201 | CGCCTCACCACCAGACCG | 62.742 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
998 | 1475 | 2.047844 | CTCACCACCAGACCGCAG | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
1054 | 1539 | 0.118346 | TCAAACCCTAGCCTCCTCCA | 59.882 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1055 | 1540 | 0.253327 | CAAACCCTAGCCTCCTCCAC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1061 | 1546 | 2.553438 | CTAGCCTCCTCCACCCCCTT | 62.553 | 65.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1524 | 2012 | 3.197766 | TCTTGCGATCTGGTTGTAAGGAT | 59.802 | 43.478 | 6.21 | 0.00 | 35.35 | 3.24 |
1525 | 2013 | 2.905075 | TGCGATCTGGTTGTAAGGATG | 58.095 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1531 | 2023 | 1.812571 | CTGGTTGTAAGGATGTGTGCC | 59.187 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
1539 | 2031 | 1.602323 | GGATGTGTGCCGGGTTTCA | 60.602 | 57.895 | 2.18 | 0.00 | 0.00 | 2.69 |
1558 | 2050 | 7.201644 | GGGTTTCACTGTAGTGTTGATATGATG | 60.202 | 40.741 | 11.44 | 0.00 | 45.76 | 3.07 |
1562 | 2054 | 8.255394 | TCACTGTAGTGTTGATATGATGTTTG | 57.745 | 34.615 | 11.44 | 0.00 | 45.76 | 2.93 |
1563 | 2055 | 7.334171 | TCACTGTAGTGTTGATATGATGTTTGG | 59.666 | 37.037 | 11.44 | 0.00 | 45.76 | 3.28 |
1567 | 2059 | 6.748333 | AGTGTTGATATGATGTTTGGTCTG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1570 | 2062 | 5.415389 | TGTTGATATGATGTTTGGTCTGGTG | 59.585 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1571 | 2063 | 5.434182 | TGATATGATGTTTGGTCTGGTGA | 57.566 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1578 | 2075 | 4.008074 | TGTTTGGTCTGGTGAGATCTTC | 57.992 | 45.455 | 0.00 | 0.00 | 29.65 | 2.87 |
1586 | 2083 | 1.487976 | TGGTGAGATCTTCCCTGATGC | 59.512 | 52.381 | 13.09 | 0.00 | 0.00 | 3.91 |
1592 | 2091 | 2.170187 | AGATCTTCCCTGATGCTGTGAC | 59.830 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1593 | 2092 | 0.615331 | TCTTCCCTGATGCTGTGACC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1600 | 2099 | 2.619849 | CCTGATGCTGTGACCCTGAAAT | 60.620 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1602 | 2101 | 1.747355 | GATGCTGTGACCCTGAAATGG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
1606 | 2105 | 2.424956 | GCTGTGACCCTGAAATGGAATC | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1609 | 2108 | 0.657840 | GACCCTGAAATGGAATCGCG | 59.342 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
1620 | 2119 | 4.701956 | ATGGAATCGCGAATGAAAAGTT | 57.298 | 36.364 | 15.24 | 0.00 | 0.00 | 2.66 |
1631 | 2130 | 7.329962 | TCGCGAATGAAAAGTTCAGTTATCTTA | 59.670 | 33.333 | 6.20 | 0.00 | 43.98 | 2.10 |
1632 | 2131 | 8.116753 | CGCGAATGAAAAGTTCAGTTATCTTAT | 58.883 | 33.333 | 0.00 | 0.00 | 43.98 | 1.73 |
1634 | 2133 | 9.214953 | CGAATGAAAAGTTCAGTTATCTTATGC | 57.785 | 33.333 | 0.00 | 0.00 | 43.98 | 3.14 |
1638 | 2137 | 9.013229 | TGAAAAGTTCAGTTATCTTATGCATGT | 57.987 | 29.630 | 10.16 | 0.00 | 34.08 | 3.21 |
1639 | 2138 | 9.495754 | GAAAAGTTCAGTTATCTTATGCATGTC | 57.504 | 33.333 | 10.16 | 0.00 | 0.00 | 3.06 |
1644 | 2146 | 6.877236 | TCAGTTATCTTATGCATGTCTGTCA | 58.123 | 36.000 | 10.16 | 0.00 | 0.00 | 3.58 |
1658 | 2160 | 3.565063 | TGTCTGTCATGTGGTGTCATTTG | 59.435 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1662 | 2164 | 4.930963 | TGTCATGTGGTGTCATTTGTTTC | 58.069 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
1667 | 2169 | 1.336440 | TGGTGTCATTTGTTTCCTGCG | 59.664 | 47.619 | 0.00 | 0.00 | 0.00 | 5.18 |
1676 | 2178 | 6.858993 | GTCATTTGTTTCCTGCGTAATTGTTA | 59.141 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1677 | 2179 | 7.380065 | GTCATTTGTTTCCTGCGTAATTGTTAA | 59.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
1678 | 2180 | 8.085296 | TCATTTGTTTCCTGCGTAATTGTTAAT | 58.915 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1684 | 2186 | 9.382244 | GTTTCCTGCGTAATTGTTAATATCATC | 57.618 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
1687 | 2189 | 7.602644 | TCCTGCGTAATTGTTAATATCATCTCC | 59.397 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
1690 | 2192 | 7.931407 | TGCGTAATTGTTAATATCATCTCCTGT | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
1707 | 2209 | 9.605275 | CATCTCCTGTTAATTAGATGACTGAAA | 57.395 | 33.333 | 7.58 | 0.00 | 45.29 | 2.69 |
1723 | 2225 | 5.163663 | TGACTGAAAAACACATGACCTGAAC | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1726 | 2228 | 6.772716 | ACTGAAAAACACATGACCTGAACTAT | 59.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
1740 | 2280 | 4.530388 | CTGAACTATTGTTGCACACTGTG | 58.470 | 43.478 | 6.19 | 6.19 | 36.39 | 3.66 |
1754 | 2294 | 1.270550 | CACTGTGGCTTGGATTTGGTC | 59.729 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1764 | 2304 | 5.393461 | GGCTTGGATTTGGTCATTCTGTTAG | 60.393 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
1770 | 2310 | 3.334583 | TGGTCATTCTGTTAGTCTGCC | 57.665 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
1775 | 2315 | 3.055819 | TCATTCTGTTAGTCTGCCCTGTC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1805 | 2345 | 2.497138 | TGGTTGCTGTGAGATTCAGTG | 58.503 | 47.619 | 0.00 | 0.00 | 35.60 | 3.66 |
1808 | 2348 | 3.557054 | GGTTGCTGTGAGATTCAGTGGTA | 60.557 | 47.826 | 0.00 | 0.00 | 35.60 | 3.25 |
1821 | 2361 | 9.396022 | GAGATTCAGTGGTATTTTTCCTATCAA | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1854 | 2394 | 4.910195 | ACACTATGAAAGGCAGATTGTCA | 58.090 | 39.130 | 0.00 | 0.00 | 26.84 | 3.58 |
1865 | 2405 | 5.021458 | AGGCAGATTGTCATTCCATTTTCT | 58.979 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
1866 | 2406 | 6.189859 | AGGCAGATTGTCATTCCATTTTCTA | 58.810 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1868 | 2408 | 6.268566 | GCAGATTGTCATTCCATTTTCTACC | 58.731 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1871 | 2411 | 7.121759 | CAGATTGTCATTCCATTTTCTACCTGT | 59.878 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
1872 | 2412 | 6.817765 | TTGTCATTCCATTTTCTACCTGTC | 57.182 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1873 | 2413 | 4.935205 | TGTCATTCCATTTTCTACCTGTCG | 59.065 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1874 | 2414 | 5.175859 | GTCATTCCATTTTCTACCTGTCGA | 58.824 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1875 | 2415 | 5.292101 | GTCATTCCATTTTCTACCTGTCGAG | 59.708 | 44.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1876 | 2416 | 5.186992 | TCATTCCATTTTCTACCTGTCGAGA | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1877 | 2417 | 5.477607 | TTCCATTTTCTACCTGTCGAGAA | 57.522 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
1878 | 2418 | 5.073311 | TCCATTTTCTACCTGTCGAGAAG | 57.927 | 43.478 | 0.00 | 0.00 | 33.38 | 2.85 |
1879 | 2419 | 4.081642 | TCCATTTTCTACCTGTCGAGAAGG | 60.082 | 45.833 | 11.72 | 11.72 | 40.93 | 3.46 |
1880 | 2420 | 3.314541 | TTTTCTACCTGTCGAGAAGGC | 57.685 | 47.619 | 12.97 | 0.00 | 38.48 | 4.35 |
1881 | 2421 | 1.919240 | TTCTACCTGTCGAGAAGGCA | 58.081 | 50.000 | 12.97 | 0.97 | 38.48 | 4.75 |
1882 | 2422 | 1.919240 | TCTACCTGTCGAGAAGGCAA | 58.081 | 50.000 | 12.97 | 2.65 | 38.48 | 4.52 |
1883 | 2423 | 1.819288 | TCTACCTGTCGAGAAGGCAAG | 59.181 | 52.381 | 12.97 | 10.92 | 38.48 | 4.01 |
1884 | 2424 | 1.819288 | CTACCTGTCGAGAAGGCAAGA | 59.181 | 52.381 | 12.97 | 0.00 | 38.48 | 3.02 |
1885 | 2425 | 0.605589 | ACCTGTCGAGAAGGCAAGAG | 59.394 | 55.000 | 12.97 | 0.00 | 38.48 | 2.85 |
1886 | 2426 | 0.108424 | CCTGTCGAGAAGGCAAGAGG | 60.108 | 60.000 | 1.24 | 0.00 | 31.91 | 3.69 |
1887 | 2427 | 0.108424 | CTGTCGAGAAGGCAAGAGGG | 60.108 | 60.000 | 0.00 | 0.00 | 31.91 | 4.30 |
1888 | 2428 | 1.448717 | GTCGAGAAGGCAAGAGGGC | 60.449 | 63.158 | 0.00 | 0.00 | 43.80 | 5.19 |
1897 | 2437 | 2.035312 | CAAGAGGGCTTGGCTGCT | 59.965 | 61.111 | 0.00 | 0.00 | 46.13 | 4.24 |
1898 | 2438 | 1.605738 | CAAGAGGGCTTGGCTGCTT | 60.606 | 57.895 | 0.00 | 0.00 | 46.13 | 3.91 |
1899 | 2439 | 1.605738 | AAGAGGGCTTGGCTGCTTG | 60.606 | 57.895 | 0.00 | 0.00 | 31.83 | 4.01 |
1900 | 2440 | 2.034687 | GAGGGCTTGGCTGCTTGA | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
1921 | 2461 | 2.045524 | GGCAGGATGAGAAGGAGATGA | 58.954 | 52.381 | 0.00 | 0.00 | 39.69 | 2.92 |
1923 | 2463 | 3.118112 | GGCAGGATGAGAAGGAGATGAAA | 60.118 | 47.826 | 0.00 | 0.00 | 39.69 | 2.69 |
1927 | 2467 | 4.104420 | AGGATGAGAAGGAGATGAAATGGG | 59.896 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
1953 | 2493 | 2.228582 | TGATCTGTTGAAACCATTGCCG | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
1982 | 2522 | 0.385974 | GGCAATGAACACGAGCACAC | 60.386 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1993 | 2535 | 3.056536 | ACACGAGCACACTGTCTGATATT | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
2054 | 2596 | 6.018098 | CCTTGCTTTGCAGTTCTATAGAGATG | 60.018 | 42.308 | 2.02 | 7.15 | 40.61 | 2.90 |
2091 | 2633 | 6.070596 | TCAGATCTCTTTCAGTTTAGGCATCA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
2093 | 2635 | 7.282675 | CAGATCTCTTTCAGTTTAGGCATCAAT | 59.717 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2099 | 2641 | 4.870636 | TCAGTTTAGGCATCAATGGGAAT | 58.129 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
2101 | 2643 | 4.646040 | CAGTTTAGGCATCAATGGGAATGA | 59.354 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2118 | 2660 | 5.107133 | GGAATGATCAGAAACAATTGCCTG | 58.893 | 41.667 | 5.05 | 10.59 | 0.00 | 4.85 |
2133 | 2675 | 7.370383 | ACAATTGCCTGTTCATAACTTTACTG | 58.630 | 34.615 | 5.05 | 0.00 | 0.00 | 2.74 |
2145 | 2687 | 1.073763 | ACTTTACTGGCAGTGCATGGA | 59.926 | 47.619 | 29.65 | 5.87 | 0.00 | 3.41 |
2160 | 2702 | 0.625091 | ATGGATTTGGGTCCCGGGTA | 60.625 | 55.000 | 22.86 | 4.13 | 37.48 | 3.69 |
2232 | 2775 | 0.322975 | GATGTGTGCTGGGTGTCTCT | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2233 | 2776 | 0.035881 | ATGTGTGCTGGGTGTCTCTG | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2261 | 2804 | 4.411256 | TGATATGATGCTTGCTGTCTGA | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
2299 | 2848 | 3.758023 | TGACGATGAAATGAAGTGGCAAT | 59.242 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
2305 | 2854 | 6.183360 | CGATGAAATGAAGTGGCAATGAAAAG | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2314 | 2863 | 4.646492 | AGTGGCAATGAAAAGTTCAGTTCT | 59.354 | 37.500 | 0.00 | 0.00 | 43.98 | 3.01 |
2352 | 2901 | 2.290367 | TCTGTGGTCTCATTTGTTTGCG | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2358 | 2907 | 3.119495 | GGTCTCATTTGTTTGCGGCTTAT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2442 | 2992 | 6.426633 | TGTTGTACAGATGGTATTGAACACTG | 59.573 | 38.462 | 0.00 | 0.00 | 33.76 | 3.66 |
2446 | 2996 | 8.151596 | TGTACAGATGGTATTGAACACTGTTAA | 58.848 | 33.333 | 0.00 | 0.00 | 38.49 | 2.01 |
2448 | 2998 | 7.871853 | ACAGATGGTATTGAACACTGTTAAAC | 58.128 | 34.615 | 0.00 | 0.00 | 36.11 | 2.01 |
2449 | 2999 | 7.040686 | ACAGATGGTATTGAACACTGTTAAACC | 60.041 | 37.037 | 0.00 | 1.72 | 36.11 | 3.27 |
2452 | 3002 | 7.648039 | TGGTATTGAACACTGTTAAACCTTT | 57.352 | 32.000 | 12.29 | 0.00 | 0.00 | 3.11 |
2454 | 3004 | 7.339721 | TGGTATTGAACACTGTTAAACCTTTGA | 59.660 | 33.333 | 12.29 | 0.00 | 0.00 | 2.69 |
2467 | 3036 | 9.137459 | TGTTAAACCTTTGATTTGGTGATTCTA | 57.863 | 29.630 | 0.00 | 0.00 | 36.57 | 2.10 |
2486 | 3055 | 8.874156 | TGATTCTATTGGTCTGCTCTGTTATAT | 58.126 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2487 | 3056 | 9.717942 | GATTCTATTGGTCTGCTCTGTTATATT | 57.282 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2528 | 3097 | 8.156820 | TGATATTCAGTTGTCTTTTCTCCTTCA | 58.843 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2543 | 3112 | 8.575649 | TTTCTCCTTCAGGAAAATTATGTACC | 57.424 | 34.615 | 0.00 | 0.00 | 44.91 | 3.34 |
2558 | 3127 | 0.458716 | GTACCTGCGACTCAGAAGCC | 60.459 | 60.000 | 0.00 | 0.00 | 45.72 | 4.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.462483 | GGCCTAAGGAAACATGATTTGTGA | 59.538 | 41.667 | 0.00 | 0.00 | 38.99 | 3.58 |
1 | 2 | 4.675146 | CGGCCTAAGGAAACATGATTTGTG | 60.675 | 45.833 | 0.00 | 0.00 | 38.99 | 3.33 |
2 | 3 | 3.443681 | CGGCCTAAGGAAACATGATTTGT | 59.556 | 43.478 | 0.00 | 0.00 | 41.53 | 2.83 |
3 | 4 | 3.443681 | ACGGCCTAAGGAAACATGATTTG | 59.556 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
4 | 5 | 3.694566 | GACGGCCTAAGGAAACATGATTT | 59.305 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
5 | 6 | 3.054361 | AGACGGCCTAAGGAAACATGATT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
6 | 7 | 2.505819 | AGACGGCCTAAGGAAACATGAT | 59.494 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
7 | 8 | 1.906574 | AGACGGCCTAAGGAAACATGA | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
8 | 9 | 2.009774 | CAGACGGCCTAAGGAAACATG | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
9 | 10 | 1.906574 | TCAGACGGCCTAAGGAAACAT | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
10 | 11 | 1.001633 | GTCAGACGGCCTAAGGAAACA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
11 | 12 | 1.275573 | AGTCAGACGGCCTAAGGAAAC | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
12 | 13 | 1.640917 | AGTCAGACGGCCTAAGGAAA | 58.359 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
13 | 14 | 1.640917 | AAGTCAGACGGCCTAAGGAA | 58.359 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
14 | 15 | 1.640917 | AAAGTCAGACGGCCTAAGGA | 58.359 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
15 | 16 | 3.821421 | ATAAAGTCAGACGGCCTAAGG | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
26 | 27 | 8.208718 | TCATCCCGTTTTATGAATAAAGTCAG | 57.791 | 34.615 | 0.00 | 0.00 | 34.13 | 3.51 |
65 | 66 | 8.463607 | CGGAGGAGGAGATAGTAGATAATTTTC | 58.536 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
68 | 69 | 7.034967 | ACGGAGGAGGAGATAGTAGATAATT | 57.965 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
70 | 71 | 6.451292 | AACGGAGGAGGAGATAGTAGATAA | 57.549 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
84 | 85 | 4.566004 | TGTTTCATGTTCTAACGGAGGAG | 58.434 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
91 | 95 | 6.304683 | GCAAACCGTATGTTTCATGTTCTAAC | 59.695 | 38.462 | 0.00 | 0.00 | 45.35 | 2.34 |
92 | 96 | 6.375377 | GCAAACCGTATGTTTCATGTTCTAA | 58.625 | 36.000 | 0.00 | 0.00 | 45.35 | 2.10 |
122 | 126 | 1.867233 | GATGTCCCGTCATACATGTGC | 59.133 | 52.381 | 9.11 | 0.00 | 36.48 | 4.57 |
135 | 139 | 9.620259 | AAATTAGAAAGAAGATAGTGATGTCCC | 57.380 | 33.333 | 0.00 | 0.00 | 0.00 | 4.46 |
207 | 248 | 0.257039 | GGGATGACATGCCCTGTTCT | 59.743 | 55.000 | 14.83 | 0.00 | 41.31 | 3.01 |
220 | 261 | 7.231317 | GGAAAAGCAAATGATGTATAGGGATGA | 59.769 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
224 | 265 | 6.713762 | TGGAAAAGCAAATGATGTATAGGG | 57.286 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
233 | 274 | 4.797471 | CTTCGTCATGGAAAAGCAAATGA | 58.203 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
240 | 290 | 1.798223 | TCGTGCTTCGTCATGGAAAAG | 59.202 | 47.619 | 0.00 | 0.00 | 40.80 | 2.27 |
263 | 313 | 3.064408 | TCATACGTGGTACGAGCTAAGTG | 59.936 | 47.826 | 8.48 | 0.00 | 46.05 | 3.16 |
264 | 314 | 3.273434 | TCATACGTGGTACGAGCTAAGT | 58.727 | 45.455 | 8.48 | 0.00 | 46.05 | 2.24 |
265 | 315 | 3.957671 | TCATACGTGGTACGAGCTAAG | 57.042 | 47.619 | 8.48 | 0.00 | 46.05 | 2.18 |
266 | 316 | 4.096833 | ACATTCATACGTGGTACGAGCTAA | 59.903 | 41.667 | 8.48 | 0.00 | 46.05 | 3.09 |
267 | 317 | 3.628942 | ACATTCATACGTGGTACGAGCTA | 59.371 | 43.478 | 8.48 | 0.00 | 46.05 | 3.32 |
268 | 318 | 2.426024 | ACATTCATACGTGGTACGAGCT | 59.574 | 45.455 | 8.48 | 0.00 | 46.05 | 4.09 |
269 | 319 | 2.805845 | ACATTCATACGTGGTACGAGC | 58.194 | 47.619 | 8.48 | 0.00 | 46.05 | 5.03 |
270 | 320 | 4.417506 | TGAACATTCATACGTGGTACGAG | 58.582 | 43.478 | 8.48 | 0.00 | 36.56 | 4.18 |
278 | 328 | 9.773328 | CACTTGAATAAATGAACATTCATACGT | 57.227 | 29.630 | 7.52 | 0.00 | 46.60 | 3.57 |
279 | 329 | 9.225201 | CCACTTGAATAAATGAACATTCATACG | 57.775 | 33.333 | 7.52 | 0.00 | 46.60 | 3.06 |
318 | 369 | 6.215845 | CAGTTGTATTTCTTTCCCTGGTTTG | 58.784 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
354 | 405 | 6.013379 | TCCTTGAGTGTCCAGAGATACATTTT | 60.013 | 38.462 | 0.00 | 0.00 | 36.63 | 1.82 |
389 | 448 | 0.610785 | GCAAATCAAAGGGACCCCGA | 60.611 | 55.000 | 7.00 | 1.61 | 41.95 | 5.14 |
390 | 449 | 0.897863 | TGCAAATCAAAGGGACCCCG | 60.898 | 55.000 | 7.00 | 0.00 | 41.95 | 5.73 |
391 | 450 | 0.897621 | CTGCAAATCAAAGGGACCCC | 59.102 | 55.000 | 7.00 | 1.17 | 0.00 | 4.95 |
401 | 460 | 8.991026 | CCTACATTTCAAAAATTCTGCAAATCA | 58.009 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
404 | 463 | 8.954950 | TTCCTACATTTCAAAAATTCTGCAAA | 57.045 | 26.923 | 0.00 | 0.00 | 0.00 | 3.68 |
432 | 491 | 9.643693 | CATGGCACTTTAATCTTGTATTTTTCT | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
466 | 530 | 1.337071 | CTCACTAGCTTCGCGGGATTA | 59.663 | 52.381 | 6.13 | 0.00 | 0.00 | 1.75 |
469 | 533 | 3.064987 | GCTCACTAGCTTCGCGGGA | 62.065 | 63.158 | 6.13 | 0.00 | 45.85 | 5.14 |
492 | 556 | 3.376234 | TGACGTCGAATACTCGGAATTCT | 59.624 | 43.478 | 11.62 | 0.00 | 45.49 | 2.40 |
493 | 557 | 3.481388 | GTGACGTCGAATACTCGGAATTC | 59.519 | 47.826 | 11.62 | 0.00 | 45.49 | 2.17 |
498 | 562 | 1.395954 | TCTGTGACGTCGAATACTCGG | 59.604 | 52.381 | 11.62 | 1.00 | 45.49 | 4.63 |
499 | 563 | 2.800694 | TCTGTGACGTCGAATACTCG | 57.199 | 50.000 | 11.62 | 0.00 | 46.87 | 4.18 |
526 | 590 | 9.965824 | CACTCAAACCTTTTTATACAATGTCTT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
527 | 591 | 8.576442 | CCACTCAAACCTTTTTATACAATGTCT | 58.424 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
528 | 592 | 8.573035 | TCCACTCAAACCTTTTTATACAATGTC | 58.427 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
529 | 593 | 8.472007 | TCCACTCAAACCTTTTTATACAATGT | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
530 | 594 | 9.357652 | CATCCACTCAAACCTTTTTATACAATG | 57.642 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
605 | 669 | 8.613922 | AAACCTCATATGAATTTTGGAGGATT | 57.386 | 30.769 | 13.39 | 4.07 | 43.58 | 3.01 |
611 | 675 | 8.284945 | TCAGAGAAACCTCATATGAATTTTGG | 57.715 | 34.615 | 13.44 | 10.17 | 33.16 | 3.28 |
626 | 690 | 6.310197 | CAGACGAATTTTGATCAGAGAAACC | 58.690 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
627 | 691 | 5.792468 | GCAGACGAATTTTGATCAGAGAAAC | 59.208 | 40.000 | 0.00 | 0.00 | 0.00 | 2.78 |
645 | 709 | 0.168128 | GTGGGGAAAATTCGCAGACG | 59.832 | 55.000 | 11.62 | 0.00 | 41.42 | 4.18 |
646 | 710 | 1.200020 | CTGTGGGGAAAATTCGCAGAC | 59.800 | 52.381 | 11.62 | 8.11 | 40.32 | 3.51 |
647 | 711 | 1.073125 | TCTGTGGGGAAAATTCGCAGA | 59.927 | 47.619 | 11.62 | 3.86 | 43.15 | 4.26 |
648 | 712 | 1.533625 | TCTGTGGGGAAAATTCGCAG | 58.466 | 50.000 | 11.62 | 0.00 | 41.42 | 5.18 |
649 | 713 | 1.611491 | GTTCTGTGGGGAAAATTCGCA | 59.389 | 47.619 | 11.62 | 0.00 | 41.42 | 5.10 |
650 | 714 | 1.886542 | AGTTCTGTGGGGAAAATTCGC | 59.113 | 47.619 | 1.88 | 1.88 | 39.19 | 4.70 |
651 | 715 | 3.146066 | TCAGTTCTGTGGGGAAAATTCG | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
652 | 716 | 5.728637 | ATTCAGTTCTGTGGGGAAAATTC | 57.271 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
653 | 717 | 6.290605 | CAAATTCAGTTCTGTGGGGAAAATT | 58.709 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
654 | 718 | 5.742838 | GCAAATTCAGTTCTGTGGGGAAAAT | 60.743 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
655 | 719 | 4.442753 | GCAAATTCAGTTCTGTGGGGAAAA | 60.443 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
659 | 723 | 2.242043 | AGCAAATTCAGTTCTGTGGGG | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
692 | 756 | 5.341196 | CGAGGACGCGTTCATTTTTATTTTT | 59.659 | 36.000 | 21.79 | 0.00 | 0.00 | 1.94 |
693 | 757 | 4.849383 | CGAGGACGCGTTCATTTTTATTTT | 59.151 | 37.500 | 21.79 | 0.00 | 0.00 | 1.82 |
694 | 758 | 4.399978 | CGAGGACGCGTTCATTTTTATTT | 58.600 | 39.130 | 21.79 | 0.00 | 0.00 | 1.40 |
695 | 759 | 3.998522 | CGAGGACGCGTTCATTTTTATT | 58.001 | 40.909 | 21.79 | 0.00 | 0.00 | 1.40 |
696 | 760 | 3.651562 | CGAGGACGCGTTCATTTTTAT | 57.348 | 42.857 | 21.79 | 0.00 | 0.00 | 1.40 |
709 | 773 | 2.104331 | AGGTATTGCGCGAGGACG | 59.896 | 61.111 | 12.10 | 0.00 | 42.93 | 4.79 |
710 | 774 | 2.526120 | GCAGGTATTGCGCGAGGAC | 61.526 | 63.158 | 12.10 | 3.57 | 44.09 | 3.85 |
711 | 775 | 2.202878 | GCAGGTATTGCGCGAGGA | 60.203 | 61.111 | 12.10 | 0.00 | 44.09 | 3.71 |
719 | 783 | 1.369091 | GCACACTCGGGCAGGTATTG | 61.369 | 60.000 | 0.00 | 0.00 | 0.00 | 1.90 |
720 | 784 | 1.078426 | GCACACTCGGGCAGGTATT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 1.89 |
721 | 785 | 2.290287 | TGCACACTCGGGCAGGTAT | 61.290 | 57.895 | 0.00 | 0.00 | 34.58 | 2.73 |
722 | 786 | 2.920384 | TGCACACTCGGGCAGGTA | 60.920 | 61.111 | 0.00 | 0.00 | 34.58 | 3.08 |
723 | 787 | 4.626081 | GTGCACACTCGGGCAGGT | 62.626 | 66.667 | 13.17 | 0.00 | 41.35 | 4.00 |
731 | 795 | 2.248431 | GCGTTTCGGTGCACACTC | 59.752 | 61.111 | 20.43 | 0.00 | 0.00 | 3.51 |
732 | 796 | 3.636043 | CGCGTTTCGGTGCACACT | 61.636 | 61.111 | 20.43 | 0.00 | 33.78 | 3.55 |
750 | 814 | 3.047718 | CTGCGCTGTCATTGGCTGG | 62.048 | 63.158 | 9.73 | 0.00 | 0.00 | 4.85 |
751 | 815 | 2.483745 | CTGCGCTGTCATTGGCTG | 59.516 | 61.111 | 9.73 | 0.00 | 0.00 | 4.85 |
752 | 816 | 2.749044 | CCTGCGCTGTCATTGGCT | 60.749 | 61.111 | 9.73 | 0.00 | 0.00 | 4.75 |
753 | 817 | 4.487412 | GCCTGCGCTGTCATTGGC | 62.487 | 66.667 | 9.73 | 7.22 | 0.00 | 4.52 |
754 | 818 | 3.057548 | TGCCTGCGCTGTCATTGG | 61.058 | 61.111 | 9.73 | 0.53 | 35.36 | 3.16 |
755 | 819 | 2.177531 | GTGCCTGCGCTGTCATTG | 59.822 | 61.111 | 9.73 | 0.00 | 35.36 | 2.82 |
756 | 820 | 3.058160 | GGTGCCTGCGCTGTCATT | 61.058 | 61.111 | 9.73 | 0.00 | 35.36 | 2.57 |
770 | 834 | 2.046023 | TGATTGGCTGGCGAGGTG | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
773 | 837 | 2.434884 | ACGTGATTGGCTGGCGAG | 60.435 | 61.111 | 0.00 | 0.00 | 0.00 | 5.03 |
774 | 838 | 2.434185 | GACGTGATTGGCTGGCGA | 60.434 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
873 | 971 | 0.608035 | GAGTTTGGGGCGTTGGATCA | 60.608 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
892 | 990 | 3.151022 | GCTGGAGGAGGGAGACGG | 61.151 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
918 | 1016 | 1.357137 | GGGAAAATTTTGGGGGCAGA | 58.643 | 50.000 | 8.47 | 0.00 | 0.00 | 4.26 |
920 | 1018 | 0.401979 | TGGGGAAAATTTTGGGGGCA | 60.402 | 50.000 | 8.47 | 0.00 | 0.00 | 5.36 |
921 | 1019 | 0.998928 | ATGGGGAAAATTTTGGGGGC | 59.001 | 50.000 | 8.47 | 0.00 | 0.00 | 5.80 |
927 | 1046 | 1.578897 | CGGGGGATGGGGAAAATTTT | 58.421 | 50.000 | 2.28 | 2.28 | 0.00 | 1.82 |
931 | 1050 | 4.068887 | GGCGGGGGATGGGGAAAA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 2.29 |
959 | 1078 | 1.880646 | CGCGGGGTTAAATAGATGGGG | 60.881 | 57.143 | 0.00 | 0.00 | 0.00 | 4.96 |
963 | 1082 | 0.763035 | AGGCGCGGGGTTAAATAGAT | 59.237 | 50.000 | 8.83 | 0.00 | 0.00 | 1.98 |
964 | 1083 | 0.105408 | GAGGCGCGGGGTTAAATAGA | 59.895 | 55.000 | 8.83 | 0.00 | 0.00 | 1.98 |
995 | 1469 | 1.509923 | GGGATTTGAGCTGTGCTGC | 59.490 | 57.895 | 0.00 | 0.00 | 39.88 | 5.25 |
998 | 1475 | 1.304381 | TGGGGGATTTGAGCTGTGC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
1031 | 1508 | 0.253327 | GGAGGCTAGGGTTTGAGTGG | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1054 | 1539 | 2.041265 | ATCGGAGCTGAAGGGGGT | 59.959 | 61.111 | 0.00 | 0.00 | 0.00 | 4.95 |
1055 | 1540 | 2.507944 | CATCGGAGCTGAAGGGGG | 59.492 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
1524 | 2012 | 1.821759 | CAGTGAAACCCGGCACACA | 60.822 | 57.895 | 11.77 | 0.00 | 37.80 | 3.72 |
1525 | 2013 | 0.533308 | TACAGTGAAACCCGGCACAC | 60.533 | 55.000 | 11.77 | 10.50 | 37.80 | 3.82 |
1539 | 2031 | 7.168219 | ACCAAACATCATATCAACACTACAGT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
1558 | 2050 | 3.339141 | GGAAGATCTCACCAGACCAAAC | 58.661 | 50.000 | 12.28 | 0.00 | 0.00 | 2.93 |
1562 | 2054 | 1.484240 | CAGGGAAGATCTCACCAGACC | 59.516 | 57.143 | 15.67 | 3.20 | 0.00 | 3.85 |
1563 | 2055 | 2.461695 | TCAGGGAAGATCTCACCAGAC | 58.538 | 52.381 | 15.67 | 3.11 | 0.00 | 3.51 |
1567 | 2059 | 1.767681 | AGCATCAGGGAAGATCTCACC | 59.232 | 52.381 | 0.00 | 1.08 | 0.00 | 4.02 |
1570 | 2062 | 2.433604 | TCACAGCATCAGGGAAGATCTC | 59.566 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1571 | 2063 | 2.170187 | GTCACAGCATCAGGGAAGATCT | 59.830 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1578 | 2075 | 1.077930 | CAGGGTCACAGCATCAGGG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
1586 | 2083 | 2.679837 | CGATTCCATTTCAGGGTCACAG | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1592 | 2091 | 1.378531 | TTCGCGATTCCATTTCAGGG | 58.621 | 50.000 | 10.88 | 0.00 | 0.00 | 4.45 |
1593 | 2092 | 2.613595 | TCATTCGCGATTCCATTTCAGG | 59.386 | 45.455 | 10.88 | 0.00 | 0.00 | 3.86 |
1600 | 2099 | 3.500299 | TGAACTTTTCATTCGCGATTCCA | 59.500 | 39.130 | 10.88 | 0.00 | 34.08 | 3.53 |
1602 | 2101 | 4.712763 | ACTGAACTTTTCATTCGCGATTC | 58.287 | 39.130 | 10.88 | 8.84 | 39.30 | 2.52 |
1606 | 2105 | 5.858475 | AGATAACTGAACTTTTCATTCGCG | 58.142 | 37.500 | 0.00 | 0.00 | 39.30 | 5.87 |
1620 | 2119 | 6.877236 | TGACAGACATGCATAAGATAACTGA | 58.123 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1635 | 2134 | 3.708403 | ATGACACCACATGACAGACAT | 57.292 | 42.857 | 0.00 | 0.00 | 36.41 | 3.06 |
1636 | 2135 | 3.490439 | AATGACACCACATGACAGACA | 57.510 | 42.857 | 0.00 | 0.00 | 36.41 | 3.41 |
1637 | 2136 | 3.565482 | ACAAATGACACCACATGACAGAC | 59.435 | 43.478 | 0.00 | 0.00 | 36.41 | 3.51 |
1638 | 2137 | 3.819368 | ACAAATGACACCACATGACAGA | 58.181 | 40.909 | 0.00 | 0.00 | 36.41 | 3.41 |
1639 | 2138 | 4.572985 | AACAAATGACACCACATGACAG | 57.427 | 40.909 | 0.00 | 0.00 | 36.41 | 3.51 |
1644 | 2146 | 3.243839 | GCAGGAAACAAATGACACCACAT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1658 | 2160 | 9.382244 | GATGATATTAACAATTACGCAGGAAAC | 57.618 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
1662 | 2164 | 7.604164 | AGGAGATGATATTAACAATTACGCAGG | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
1692 | 2194 | 8.299570 | GGTCATGTGTTTTTCAGTCATCTAATT | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1701 | 2203 | 4.949856 | AGTTCAGGTCATGTGTTTTTCAGT | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1702 | 2204 | 5.505173 | AGTTCAGGTCATGTGTTTTTCAG | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
1707 | 2209 | 6.735694 | GCAACAATAGTTCAGGTCATGTGTTT | 60.736 | 38.462 | 0.00 | 0.00 | 35.28 | 2.83 |
1740 | 2280 | 2.827921 | ACAGAATGACCAAATCCAAGCC | 59.172 | 45.455 | 0.00 | 0.00 | 39.69 | 4.35 |
1754 | 2294 | 3.265791 | GACAGGGCAGACTAACAGAATG | 58.734 | 50.000 | 0.00 | 0.00 | 46.00 | 2.67 |
1764 | 2304 | 3.064900 | AGAAGAAATGACAGGGCAGAC | 57.935 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1770 | 2310 | 3.571401 | AGCAACCAAGAAGAAATGACAGG | 59.429 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1775 | 2315 | 4.276678 | TCTCACAGCAACCAAGAAGAAATG | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
1821 | 2361 | 8.630054 | TGCCTTTCATAGTGTACAAAATTACT | 57.370 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
1840 | 2380 | 5.750352 | AAATGGAATGACAATCTGCCTTT | 57.250 | 34.783 | 0.00 | 0.00 | 0.00 | 3.11 |
1854 | 2394 | 5.677319 | TCTCGACAGGTAGAAAATGGAAT | 57.323 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1865 | 2405 | 1.819288 | CTCTTGCCTTCTCGACAGGTA | 59.181 | 52.381 | 7.58 | 0.82 | 33.40 | 3.08 |
1866 | 2406 | 0.605589 | CTCTTGCCTTCTCGACAGGT | 59.394 | 55.000 | 7.58 | 0.00 | 33.40 | 4.00 |
1868 | 2408 | 0.108424 | CCCTCTTGCCTTCTCGACAG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1871 | 2411 | 1.194781 | AAGCCCTCTTGCCTTCTCGA | 61.195 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1872 | 2412 | 1.023513 | CAAGCCCTCTTGCCTTCTCG | 61.024 | 60.000 | 0.00 | 0.00 | 42.66 | 4.04 |
1873 | 2413 | 0.679321 | CCAAGCCCTCTTGCCTTCTC | 60.679 | 60.000 | 0.00 | 0.00 | 46.38 | 2.87 |
1874 | 2414 | 1.381851 | CCAAGCCCTCTTGCCTTCT | 59.618 | 57.895 | 0.00 | 0.00 | 46.38 | 2.85 |
1875 | 2415 | 2.346541 | GCCAAGCCCTCTTGCCTTC | 61.347 | 63.158 | 0.00 | 0.00 | 46.38 | 3.46 |
1876 | 2416 | 2.283460 | GCCAAGCCCTCTTGCCTT | 60.283 | 61.111 | 0.00 | 0.00 | 46.38 | 4.35 |
1877 | 2417 | 3.263259 | AGCCAAGCCCTCTTGCCT | 61.263 | 61.111 | 0.00 | 0.00 | 46.38 | 4.75 |
1878 | 2418 | 3.066814 | CAGCCAAGCCCTCTTGCC | 61.067 | 66.667 | 0.00 | 0.00 | 46.38 | 4.52 |
1879 | 2419 | 3.756727 | GCAGCCAAGCCCTCTTGC | 61.757 | 66.667 | 0.00 | 0.00 | 46.38 | 4.01 |
1881 | 2421 | 1.605738 | CAAGCAGCCAAGCCCTCTT | 60.606 | 57.895 | 0.00 | 0.00 | 34.23 | 2.85 |
1882 | 2422 | 2.035312 | CAAGCAGCCAAGCCCTCT | 59.965 | 61.111 | 0.00 | 0.00 | 34.23 | 3.69 |
1883 | 2423 | 2.034687 | TCAAGCAGCCAAGCCCTC | 59.965 | 61.111 | 0.00 | 0.00 | 34.23 | 4.30 |
1884 | 2424 | 2.035312 | CTCAAGCAGCCAAGCCCT | 59.965 | 61.111 | 0.00 | 0.00 | 34.23 | 5.19 |
1885 | 2425 | 3.066814 | CCTCAAGCAGCCAAGCCC | 61.067 | 66.667 | 0.00 | 0.00 | 34.23 | 5.19 |
1886 | 2426 | 3.756727 | GCCTCAAGCAGCCAAGCC | 61.757 | 66.667 | 0.00 | 0.00 | 42.97 | 4.35 |
1895 | 2435 | 1.666054 | CTTCTCATCCTGCCTCAAGC | 58.334 | 55.000 | 0.00 | 0.00 | 44.14 | 4.01 |
1896 | 2436 | 1.836166 | TCCTTCTCATCCTGCCTCAAG | 59.164 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1897 | 2437 | 1.836166 | CTCCTTCTCATCCTGCCTCAA | 59.164 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1898 | 2438 | 1.007600 | TCTCCTTCTCATCCTGCCTCA | 59.992 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1899 | 2439 | 1.786937 | TCTCCTTCTCATCCTGCCTC | 58.213 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1900 | 2440 | 2.048601 | CATCTCCTTCTCATCCTGCCT | 58.951 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
1907 | 2447 | 5.444176 | GAACCCATTTCATCTCCTTCTCAT | 58.556 | 41.667 | 0.00 | 0.00 | 33.94 | 2.90 |
1921 | 2461 | 4.387026 | TCAACAGATCAGGAACCCATTT | 57.613 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
1923 | 2463 | 4.082125 | GTTTCAACAGATCAGGAACCCAT | 58.918 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1927 | 2467 | 5.464168 | CAATGGTTTCAACAGATCAGGAAC | 58.536 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1974 | 2514 | 4.045104 | GGTAATATCAGACAGTGTGCTCG | 58.955 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
1982 | 2522 | 6.644347 | AGTTCACCTTGGTAATATCAGACAG | 58.356 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1993 | 2535 | 5.801380 | GGATACAAGAAGTTCACCTTGGTA | 58.199 | 41.667 | 5.50 | 0.00 | 42.86 | 3.25 |
2054 | 2596 | 4.399004 | AGAGATCTGATTGCCACTGTAC | 57.601 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2091 | 2633 | 6.110707 | GCAATTGTTTCTGATCATTCCCATT | 58.889 | 36.000 | 7.40 | 0.00 | 0.00 | 3.16 |
2093 | 2635 | 4.081531 | GGCAATTGTTTCTGATCATTCCCA | 60.082 | 41.667 | 7.40 | 0.00 | 0.00 | 4.37 |
2099 | 2641 | 4.583907 | TGAACAGGCAATTGTTTCTGATCA | 59.416 | 37.500 | 21.75 | 21.75 | 41.15 | 2.92 |
2101 | 2643 | 5.733620 | ATGAACAGGCAATTGTTTCTGAT | 57.266 | 34.783 | 22.75 | 15.55 | 41.15 | 2.90 |
2118 | 2660 | 4.215399 | TGCACTGCCAGTAAAGTTATGAAC | 59.785 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2133 | 2675 | 1.259840 | ACCCAAATCCATGCACTGCC | 61.260 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2145 | 2687 | 0.625091 | TCCATACCCGGGACCCAAAT | 60.625 | 55.000 | 32.02 | 4.78 | 0.00 | 2.32 |
2160 | 2702 | 7.405292 | TGATCCTTTGACTAGACAAAATCCAT | 58.595 | 34.615 | 18.57 | 9.69 | 38.90 | 3.41 |
2212 | 2755 | 0.035317 | GAGACACCCAGCACACATCA | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2232 | 2775 | 5.295045 | CAGCAAGCATCATATCAACACTACA | 59.705 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2233 | 2776 | 5.295292 | ACAGCAAGCATCATATCAACACTAC | 59.705 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2261 | 2804 | 1.464608 | CGTCACAACGCAGGAAATCAT | 59.535 | 47.619 | 0.00 | 0.00 | 42.82 | 2.45 |
2282 | 2831 | 6.527423 | ACTTTTCATTGCCACTTCATTTCAT | 58.473 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2299 | 2848 | 7.509141 | TGCATCATAAGAACTGAACTTTTCA | 57.491 | 32.000 | 0.00 | 0.00 | 38.17 | 2.69 |
2330 | 2879 | 3.607775 | CGCAAACAAATGAGACCACAGAG | 60.608 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
2331 | 2880 | 2.290367 | CGCAAACAAATGAGACCACAGA | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2336 | 2885 | 0.598065 | AGCCGCAAACAAATGAGACC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2446 | 2996 | 7.235399 | ACCAATAGAATCACCAAATCAAAGGTT | 59.765 | 33.333 | 0.00 | 0.00 | 35.52 | 3.50 |
2448 | 2998 | 7.123247 | AGACCAATAGAATCACCAAATCAAAGG | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
2449 | 2999 | 7.972277 | CAGACCAATAGAATCACCAAATCAAAG | 59.028 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2452 | 3002 | 5.357878 | GCAGACCAATAGAATCACCAAATCA | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2454 | 3004 | 5.513233 | AGCAGACCAATAGAATCACCAAAT | 58.487 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2467 | 3036 | 7.944729 | ACAAAATATAACAGAGCAGACCAAT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2469 | 3038 | 7.309133 | CCAAACAAAATATAACAGAGCAGACCA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2486 | 3055 | 4.870123 | ATATCACAGCAGCCAAACAAAA | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 2.44 |
2487 | 3056 | 4.280425 | TGAATATCACAGCAGCCAAACAAA | 59.720 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2528 | 3097 | 5.099042 | AGTCGCAGGTACATAATTTTCCT | 57.901 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2543 | 3112 | 2.200067 | CTATTGGCTTCTGAGTCGCAG | 58.800 | 52.381 | 0.00 | 0.00 | 46.31 | 5.18 |
2558 | 3127 | 0.879400 | CCCGAGCTCTGCTGCTATTG | 60.879 | 60.000 | 12.85 | 0.00 | 44.17 | 1.90 |
2592 | 3161 | 3.110705 | ACAGCAGGAATCCACTACTCAT | 58.889 | 45.455 | 0.61 | 0.00 | 0.00 | 2.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.