Multiple sequence alignment - TraesCS7D01G096600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G096600 chr7D 100.000 6231 0 0 1 6231 58631697 58637927 0.000000e+00 11507.0
1 TraesCS7D01G096600 chr7D 100.000 254 0 0 6589 6842 58638285 58638538 2.890000e-128 470.0
2 TraesCS7D01G096600 chr7D 86.667 210 5 3 6045 6231 622388809 622388600 1.930000e-50 211.0
3 TraesCS7D01G096600 chr7D 83.417 199 20 10 6034 6221 8727246 8727442 9.120000e-39 172.0
4 TraesCS7D01G096600 chr7D 80.412 194 27 9 6047 6230 566466491 566466683 3.330000e-28 137.0
5 TraesCS7D01G096600 chr7D 97.727 44 1 0 2940 2983 58634585 58634628 7.360000e-10 76.8
6 TraesCS7D01G096600 chr7D 97.727 44 1 0 2889 2932 58634636 58634679 7.360000e-10 76.8
7 TraesCS7D01G096600 chr7A 92.928 1923 80 22 2889 4807 63055221 63057091 0.000000e+00 2747.0
8 TraesCS7D01G096600 chr7A 93.290 1222 64 7 4806 6012 63057151 63058369 0.000000e+00 1786.0
9 TraesCS7D01G096600 chr7A 94.836 1065 50 5 1923 2983 63054201 63055264 0.000000e+00 1657.0
10 TraesCS7D01G096600 chr7A 89.591 538 27 8 1 509 63052058 63052595 0.000000e+00 656.0
11 TraesCS7D01G096600 chr7A 83.792 654 64 19 1259 1886 63053568 63054205 3.560000e-162 582.0
12 TraesCS7D01G096600 chr7A 91.449 421 29 4 726 1145 63052783 63053197 7.700000e-159 571.0
13 TraesCS7D01G096600 chr7A 79.793 193 26 11 6045 6229 134982707 134982520 2.000000e-25 128.0
14 TraesCS7D01G096600 chr4A 93.201 1662 87 14 4369 6013 675518792 675520444 0.000000e+00 2420.0
15 TraesCS7D01G096600 chr4A 94.949 1188 58 2 1797 2983 675515972 675517158 0.000000e+00 1860.0
16 TraesCS7D01G096600 chr4A 92.392 999 47 19 2889 3876 675517166 675518146 0.000000e+00 1397.0
17 TraesCS7D01G096600 chr4A 86.385 1065 69 34 763 1766 675514863 675515912 0.000000e+00 1094.0
18 TraesCS7D01G096600 chr4A 92.208 385 22 1 3980 4356 675518326 675518710 7.810000e-149 538.0
19 TraesCS7D01G096600 chr4A 82.425 569 67 17 948 1502 295804405 295803856 3.740000e-127 466.0
20 TraesCS7D01G096600 chr4A 80.438 593 55 29 947 1502 694622920 694623488 4.970000e-106 396.0
21 TraesCS7D01G096600 chr4A 85.841 339 36 9 1076 1406 50230377 50230711 3.930000e-92 350.0
22 TraesCS7D01G096600 chr4A 81.627 332 33 5 194 499 675223612 675223941 4.100000e-62 250.0
23 TraesCS7D01G096600 chr4A 81.627 332 33 5 194 499 675291101 675291430 4.100000e-62 250.0
24 TraesCS7D01G096600 chr4A 97.895 95 2 0 2889 2983 675517115 675517209 1.530000e-36 165.0
25 TraesCS7D01G096600 chr4A 96.250 80 3 0 3904 3983 675518272 675518351 1.550000e-26 132.0
26 TraesCS7D01G096600 chr4A 97.778 45 1 0 2939 2983 675517063 675517107 2.050000e-10 78.7
27 TraesCS7D01G096600 chr3D 99.606 254 1 0 6589 6842 51045943 51045690 1.340000e-126 464.0
28 TraesCS7D01G096600 chr3D 98.810 252 3 0 6589 6840 250056709 250056960 3.760000e-122 449.0
29 TraesCS7D01G096600 chr3D 97.638 254 6 0 6589 6842 573702789 573702536 2.930000e-118 436.0
30 TraesCS7D01G096600 chr3D 88.584 219 2 3 6036 6231 250055922 250056140 1.910000e-60 244.0
31 TraesCS7D01G096600 chr3D 86.301 219 7 10 6036 6231 30171124 30170906 4.160000e-52 217.0
32 TraesCS7D01G096600 chr3D 98.113 106 2 0 6037 6142 573703594 573703489 1.170000e-42 185.0
33 TraesCS7D01G096600 chr6D 99.605 253 1 0 6589 6841 29372258 29372510 4.830000e-126 462.0
34 TraesCS7D01G096600 chr6D 96.063 254 10 0 6589 6842 89212073 89211820 1.370000e-111 414.0
35 TraesCS7D01G096600 chr5D 99.605 253 1 0 6589 6841 327630278 327630026 4.830000e-126 462.0
36 TraesCS7D01G096600 chr5D 98.819 254 3 0 6589 6842 327629883 327629630 2.910000e-123 453.0
37 TraesCS7D01G096600 chr5D 87.783 221 2 11 6036 6231 327631002 327630782 1.150000e-57 235.0
38 TraesCS7D01G096600 chr3B 83.178 535 58 22 947 1475 751467575 751467067 1.740000e-125 460.0
39 TraesCS7D01G096600 chr2D 98.819 254 3 0 6589 6842 184129956 184130209 2.910000e-123 453.0
40 TraesCS7D01G096600 chr2D 97.638 254 6 0 6589 6842 23498494 23498241 2.930000e-118 436.0
41 TraesCS7D01G096600 chr2D 87.805 205 2 3 6036 6217 184129173 184129377 1.160000e-52 219.0
42 TraesCS7D01G096600 chr4B 81.658 567 62 22 947 1502 1124508 1125043 3.790000e-117 433.0
43 TraesCS7D01G096600 chr5A 81.349 504 59 19 10 481 613333653 613334153 1.800000e-100 377.0
44 TraesCS7D01G096600 chr6B 87.021 339 35 5 1076 1406 284281046 284281383 2.330000e-99 374.0
45 TraesCS7D01G096600 chr6A 85.924 341 39 5 1074 1406 159244119 159243780 8.440000e-94 355.0
46 TraesCS7D01G096600 chr7B 83.594 384 35 8 940 1300 176808159 176807781 1.100000e-87 335.0
47 TraesCS7D01G096600 chr1D 90.233 215 5 3 6033 6231 17212706 17212492 4.070000e-67 267.0
48 TraesCS7D01G096600 chrUn 81.627 332 33 5 194 499 354341081 354341410 4.100000e-62 250.0
49 TraesCS7D01G096600 chr5B 96.250 80 2 1 6153 6231 554779190 554779111 5.570000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G096600 chr7D 58631697 58638538 6841 False 3032.650000 11507 98.863500 1 6842 4 chr7D.!!$F3 6841
1 TraesCS7D01G096600 chr7A 63052058 63058369 6311 False 1333.166667 2747 90.981000 1 6012 6 chr7A.!!$F1 6011
2 TraesCS7D01G096600 chr4A 675514863 675520444 5581 False 960.587500 2420 93.882250 763 6013 8 chr4A.!!$F5 5250
3 TraesCS7D01G096600 chr4A 295803856 295804405 549 True 466.000000 466 82.425000 948 1502 1 chr4A.!!$R1 554
4 TraesCS7D01G096600 chr4A 694622920 694623488 568 False 396.000000 396 80.438000 947 1502 1 chr4A.!!$F4 555
5 TraesCS7D01G096600 chr3D 250055922 250056960 1038 False 346.500000 449 93.697000 6036 6840 2 chr3D.!!$F1 804
6 TraesCS7D01G096600 chr3D 573702536 573703594 1058 True 310.500000 436 97.875500 6037 6842 2 chr3D.!!$R3 805
7 TraesCS7D01G096600 chr5D 327629630 327631002 1372 True 383.333333 462 95.402333 6036 6842 3 chr5D.!!$R1 806
8 TraesCS7D01G096600 chr3B 751467067 751467575 508 True 460.000000 460 83.178000 947 1475 1 chr3B.!!$R1 528
9 TraesCS7D01G096600 chr2D 184129173 184130209 1036 False 336.000000 453 93.312000 6036 6842 2 chr2D.!!$F1 806
10 TraesCS7D01G096600 chr4B 1124508 1125043 535 False 433.000000 433 81.658000 947 1502 1 chr4B.!!$F1 555
11 TraesCS7D01G096600 chr5A 613333653 613334153 500 False 377.000000 377 81.349000 10 481 1 chr5A.!!$F1 471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 721 0.321919 AGTCATTCATGCGCTGGTGT 60.322 50.000 9.73 0.0 0.00 4.16 F
1585 2018 0.035881 TTCACCCTGCAGCTCTGAAG 59.964 55.000 8.66 0.0 35.97 3.02 F
1780 2238 0.108520 GGATTCCACGGACGCACTAA 60.109 55.000 0.00 0.0 0.00 2.24 F
2000 2488 0.249238 GGACTACGAGCTGCTGATGG 60.249 60.000 7.01 0.0 0.00 3.51 F
2128 2616 0.322098 TGGCCAATGACCCAACTACG 60.322 55.000 0.61 0.0 0.00 3.51 F
3783 4372 0.834612 AACACCCCTCGTCTCACAAA 59.165 50.000 0.00 0.0 0.00 2.83 F
3970 4684 1.150081 GCCTGAGGGACCATCCATG 59.850 63.158 3.19 0.0 38.64 3.66 F
4610 5402 0.801872 TTCGCATTTACGCAGCATGT 59.198 45.000 0.00 0.0 39.31 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 2064 0.179012 GGGTGAAAAACTCGGACCCA 60.179 55.000 0.00 0.00 45.03 4.51 R
2786 3277 1.364901 CTGGACGTGTACCACCGTT 59.635 57.895 0.00 0.00 33.57 4.44 R
3420 4008 1.533756 CCGCATATCCTTGCAAAACCG 60.534 52.381 0.00 0.00 42.91 4.44 R
3862 4451 0.388659 TGTTGCTGTTGGAACCATGC 59.611 50.000 0.00 1.32 42.72 4.06 R
3974 4688 0.768622 ACATGGACGGTCCCTTCAAA 59.231 50.000 23.81 4.88 35.03 2.69 R
4588 5380 0.167908 TGCTGCGTAAATGCGAAAGG 59.832 50.000 0.00 0.00 37.81 3.11 R
5405 6303 1.133823 ACCAGTGCAAAGATGTCCACA 60.134 47.619 0.00 0.00 0.00 4.17 R
6031 6946 0.466555 GCGAGAGGAGAGGAGGCTAA 60.467 60.000 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.861202 TGGAATGCCTACTCTAGCGTAGC 61.861 52.174 13.43 9.88 46.09 3.58
158 162 5.472478 CAGGAGTGGTCATGATTGATTATGG 59.528 44.000 0.00 0.00 36.55 2.74
366 396 5.834742 AGATGCCACCTTAAATATGCAATCA 59.165 36.000 0.00 0.00 31.81 2.57
372 402 7.658575 GCCACCTTAAATATGCAATCATTCATT 59.341 33.333 0.00 0.00 34.22 2.57
421 451 6.978343 ACAATTCATCATTTGCATTTCCAG 57.022 33.333 0.00 0.00 0.00 3.86
457 487 7.882791 TCATATTATTAAGCCGAACATCCATGT 59.117 33.333 0.00 0.00 44.20 3.21
491 521 2.609459 AGCCTCACTAAAATGAATCGCG 59.391 45.455 0.00 0.00 0.00 5.87
495 525 4.259970 CCTCACTAAAATGAATCGCGACAG 60.260 45.833 12.93 1.13 0.00 3.51
509 539 1.272781 CGACAGATTCTCGGAGCAAC 58.727 55.000 0.00 0.00 0.00 4.17
510 540 1.402852 CGACAGATTCTCGGAGCAACA 60.403 52.381 0.00 0.00 0.00 3.33
512 542 1.344438 ACAGATTCTCGGAGCAACACA 59.656 47.619 0.00 0.00 0.00 3.72
513 543 2.027745 ACAGATTCTCGGAGCAACACAT 60.028 45.455 0.00 0.00 0.00 3.21
514 544 2.606725 CAGATTCTCGGAGCAACACATC 59.393 50.000 0.00 0.00 0.00 3.06
518 590 2.621338 TCTCGGAGCAACACATCAATC 58.379 47.619 0.00 0.00 0.00 2.67
523 595 3.181513 CGGAGCAACACATCAATCTTCTG 60.182 47.826 0.00 0.00 0.00 3.02
524 596 3.128242 GGAGCAACACATCAATCTTCTGG 59.872 47.826 0.00 0.00 0.00 3.86
536 608 5.532557 TCAATCTTCTGGATAGTACATGCG 58.467 41.667 0.00 0.00 33.71 4.73
543 615 1.337823 GGATAGTACATGCGGCGGAAT 60.338 52.381 4.50 0.00 0.00 3.01
544 616 1.726791 GATAGTACATGCGGCGGAATG 59.273 52.381 4.50 10.60 35.10 2.67
545 617 0.462375 TAGTACATGCGGCGGAATGT 59.538 50.000 20.56 20.56 44.82 2.71
547 619 1.817520 TACATGCGGCGGAATGTGG 60.818 57.895 24.35 6.36 42.61 4.17
548 620 2.529454 TACATGCGGCGGAATGTGGT 62.529 55.000 24.35 10.89 42.61 4.16
549 621 3.133464 ATGCGGCGGAATGTGGTG 61.133 61.111 4.50 0.00 0.00 4.17
552 624 2.819595 CGGCGGAATGTGGTGGAG 60.820 66.667 0.00 0.00 0.00 3.86
553 625 3.134127 GGCGGAATGTGGTGGAGC 61.134 66.667 0.00 0.00 0.00 4.70
554 626 2.359850 GCGGAATGTGGTGGAGCA 60.360 61.111 0.00 0.00 0.00 4.26
555 627 1.971167 GCGGAATGTGGTGGAGCAA 60.971 57.895 0.00 0.00 0.00 3.91
556 628 1.523154 GCGGAATGTGGTGGAGCAAA 61.523 55.000 0.00 0.00 0.00 3.68
557 629 1.176527 CGGAATGTGGTGGAGCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
558 630 2.364632 CGGAATGTGGTGGAGCAAATA 58.635 47.619 0.00 0.00 0.00 1.40
559 631 2.355756 CGGAATGTGGTGGAGCAAATAG 59.644 50.000 0.00 0.00 0.00 1.73
560 632 3.620488 GGAATGTGGTGGAGCAAATAGA 58.380 45.455 0.00 0.00 0.00 1.98
561 633 3.629398 GGAATGTGGTGGAGCAAATAGAG 59.371 47.826 0.00 0.00 0.00 2.43
562 634 4.517285 GAATGTGGTGGAGCAAATAGAGA 58.483 43.478 0.00 0.00 0.00 3.10
563 635 4.785346 ATGTGGTGGAGCAAATAGAGAT 57.215 40.909 0.00 0.00 0.00 2.75
564 636 4.574674 TGTGGTGGAGCAAATAGAGATT 57.425 40.909 0.00 0.00 0.00 2.40
565 637 5.692115 TGTGGTGGAGCAAATAGAGATTA 57.308 39.130 0.00 0.00 0.00 1.75
566 638 6.252599 TGTGGTGGAGCAAATAGAGATTAT 57.747 37.500 0.00 0.00 0.00 1.28
567 639 6.291377 TGTGGTGGAGCAAATAGAGATTATC 58.709 40.000 0.00 0.00 0.00 1.75
568 640 5.703130 GTGGTGGAGCAAATAGAGATTATCC 59.297 44.000 0.00 0.00 0.00 2.59
569 641 5.369404 TGGTGGAGCAAATAGAGATTATCCA 59.631 40.000 0.00 0.00 33.29 3.41
570 642 5.936956 GGTGGAGCAAATAGAGATTATCCAG 59.063 44.000 0.00 0.00 34.99 3.86
571 643 5.411053 GTGGAGCAAATAGAGATTATCCAGC 59.589 44.000 0.00 0.00 34.99 4.85
572 644 5.072193 TGGAGCAAATAGAGATTATCCAGCA 59.928 40.000 0.00 0.00 31.89 4.41
573 645 5.642919 GGAGCAAATAGAGATTATCCAGCAG 59.357 44.000 0.00 0.00 0.00 4.24
574 646 5.002516 AGCAAATAGAGATTATCCAGCAGC 58.997 41.667 0.00 0.00 0.00 5.25
575 647 4.155644 GCAAATAGAGATTATCCAGCAGCC 59.844 45.833 0.00 0.00 0.00 4.85
576 648 5.311265 CAAATAGAGATTATCCAGCAGCCA 58.689 41.667 0.00 0.00 0.00 4.75
577 649 5.573380 AATAGAGATTATCCAGCAGCCAA 57.427 39.130 0.00 0.00 0.00 4.52
578 650 5.775813 ATAGAGATTATCCAGCAGCCAAT 57.224 39.130 0.00 0.00 0.00 3.16
579 651 6.881067 ATAGAGATTATCCAGCAGCCAATA 57.119 37.500 0.00 0.00 0.00 1.90
580 652 4.904241 AGAGATTATCCAGCAGCCAATAC 58.096 43.478 0.00 0.00 0.00 1.89
581 653 4.596643 AGAGATTATCCAGCAGCCAATACT 59.403 41.667 0.00 0.00 0.00 2.12
582 654 5.782331 AGAGATTATCCAGCAGCCAATACTA 59.218 40.000 0.00 0.00 0.00 1.82
583 655 5.799213 AGATTATCCAGCAGCCAATACTAC 58.201 41.667 0.00 0.00 0.00 2.73
584 656 5.545723 AGATTATCCAGCAGCCAATACTACT 59.454 40.000 0.00 0.00 0.00 2.57
585 657 3.760580 ATCCAGCAGCCAATACTACTC 57.239 47.619 0.00 0.00 0.00 2.59
586 658 1.409064 TCCAGCAGCCAATACTACTCG 59.591 52.381 0.00 0.00 0.00 4.18
587 659 1.539065 CCAGCAGCCAATACTACTCGG 60.539 57.143 0.00 0.00 0.00 4.63
588 660 1.409064 CAGCAGCCAATACTACTCGGA 59.591 52.381 0.00 0.00 0.00 4.55
589 661 2.036475 CAGCAGCCAATACTACTCGGAT 59.964 50.000 0.00 0.00 0.00 4.18
590 662 2.700897 AGCAGCCAATACTACTCGGATT 59.299 45.455 0.00 0.00 0.00 3.01
591 663 3.134804 AGCAGCCAATACTACTCGGATTT 59.865 43.478 0.00 0.00 0.00 2.17
592 664 3.248602 GCAGCCAATACTACTCGGATTTG 59.751 47.826 0.00 0.00 0.00 2.32
593 665 3.248602 CAGCCAATACTACTCGGATTTGC 59.751 47.826 0.00 0.00 0.00 3.68
594 666 2.548480 GCCAATACTACTCGGATTTGCC 59.452 50.000 0.00 0.00 0.00 4.52
595 667 3.804036 CCAATACTACTCGGATTTGCCA 58.196 45.455 0.00 0.00 35.94 4.92
596 668 4.196193 CCAATACTACTCGGATTTGCCAA 58.804 43.478 0.00 0.00 35.94 4.52
597 669 4.035208 CCAATACTACTCGGATTTGCCAAC 59.965 45.833 0.00 0.00 35.94 3.77
598 670 4.755266 ATACTACTCGGATTTGCCAACT 57.245 40.909 0.00 0.00 35.94 3.16
599 671 2.973945 ACTACTCGGATTTGCCAACTC 58.026 47.619 0.00 0.00 35.94 3.01
600 672 1.927174 CTACTCGGATTTGCCAACTCG 59.073 52.381 0.00 0.00 35.94 4.18
601 673 1.298859 ACTCGGATTTGCCAACTCGC 61.299 55.000 0.00 0.00 35.94 5.03
602 674 1.298157 CTCGGATTTGCCAACTCGCA 61.298 55.000 0.00 0.00 36.85 5.10
603 675 0.886938 TCGGATTTGCCAACTCGCAA 60.887 50.000 0.00 0.00 46.72 4.85
607 679 4.057224 TTGCCAACTCGCAACGAT 57.943 50.000 0.00 0.00 43.65 3.73
608 680 1.866237 TTGCCAACTCGCAACGATC 59.134 52.632 0.00 0.00 43.65 3.69
609 681 1.573829 TTGCCAACTCGCAACGATCC 61.574 55.000 0.00 0.00 43.65 3.36
610 682 2.032634 GCCAACTCGCAACGATCCA 61.033 57.895 0.00 0.00 34.61 3.41
611 683 1.369091 GCCAACTCGCAACGATCCAT 61.369 55.000 0.00 0.00 34.61 3.41
612 684 0.652592 CCAACTCGCAACGATCCATC 59.347 55.000 0.00 0.00 34.61 3.51
613 685 1.645034 CAACTCGCAACGATCCATCT 58.355 50.000 0.00 0.00 34.61 2.90
614 686 2.481276 CCAACTCGCAACGATCCATCTA 60.481 50.000 0.00 0.00 34.61 1.98
615 687 3.186909 CAACTCGCAACGATCCATCTAA 58.813 45.455 0.00 0.00 34.61 2.10
616 688 2.810650 ACTCGCAACGATCCATCTAAC 58.189 47.619 0.00 0.00 34.61 2.34
617 689 1.781429 CTCGCAACGATCCATCTAACG 59.219 52.381 0.00 0.00 34.61 3.18
618 690 0.852777 CGCAACGATCCATCTAACGG 59.147 55.000 0.00 0.00 0.00 4.44
619 691 1.801395 CGCAACGATCCATCTAACGGT 60.801 52.381 0.00 0.00 0.00 4.83
620 692 1.859080 GCAACGATCCATCTAACGGTC 59.141 52.381 0.00 0.00 0.00 4.79
621 693 2.737359 GCAACGATCCATCTAACGGTCA 60.737 50.000 0.00 0.00 0.00 4.02
622 694 3.517602 CAACGATCCATCTAACGGTCAA 58.482 45.455 0.00 0.00 0.00 3.18
623 695 4.119862 CAACGATCCATCTAACGGTCAAT 58.880 43.478 0.00 0.00 0.00 2.57
624 696 3.717707 ACGATCCATCTAACGGTCAATG 58.282 45.455 0.00 0.00 0.00 2.82
625 697 3.132289 ACGATCCATCTAACGGTCAATGT 59.868 43.478 0.00 0.00 0.00 2.71
626 698 3.736252 CGATCCATCTAACGGTCAATGTC 59.264 47.826 0.00 0.00 0.00 3.06
627 699 3.536956 TCCATCTAACGGTCAATGTCC 57.463 47.619 0.00 0.00 0.00 4.02
628 700 2.835156 TCCATCTAACGGTCAATGTCCA 59.165 45.455 0.00 0.00 0.00 4.02
629 701 3.262151 TCCATCTAACGGTCAATGTCCAA 59.738 43.478 0.00 0.00 0.00 3.53
630 702 4.006989 CCATCTAACGGTCAATGTCCAAA 58.993 43.478 0.00 0.00 0.00 3.28
631 703 4.094887 CCATCTAACGGTCAATGTCCAAAG 59.905 45.833 0.00 0.00 0.00 2.77
632 704 4.345859 TCTAACGGTCAATGTCCAAAGT 57.654 40.909 0.00 0.00 0.00 2.66
633 705 4.312443 TCTAACGGTCAATGTCCAAAGTC 58.688 43.478 0.00 0.00 0.00 3.01
634 706 2.631160 ACGGTCAATGTCCAAAGTCA 57.369 45.000 0.00 0.00 0.00 3.41
635 707 3.140325 ACGGTCAATGTCCAAAGTCAT 57.860 42.857 0.00 0.00 0.00 3.06
636 708 3.486383 ACGGTCAATGTCCAAAGTCATT 58.514 40.909 0.00 0.00 32.85 2.57
637 709 3.502211 ACGGTCAATGTCCAAAGTCATTC 59.498 43.478 0.00 0.00 30.63 2.67
638 710 3.501828 CGGTCAATGTCCAAAGTCATTCA 59.498 43.478 0.00 0.00 30.63 2.57
639 711 4.156556 CGGTCAATGTCCAAAGTCATTCAT 59.843 41.667 0.00 0.00 30.63 2.57
640 712 5.404946 GGTCAATGTCCAAAGTCATTCATG 58.595 41.667 0.00 0.00 30.63 3.07
641 713 4.860907 GTCAATGTCCAAAGTCATTCATGC 59.139 41.667 0.00 0.00 30.63 4.06
642 714 3.770263 ATGTCCAAAGTCATTCATGCG 57.230 42.857 0.00 0.00 0.00 4.73
643 715 1.199789 TGTCCAAAGTCATTCATGCGC 59.800 47.619 0.00 0.00 0.00 6.09
644 716 1.470098 GTCCAAAGTCATTCATGCGCT 59.530 47.619 9.73 0.00 0.00 5.92
645 717 1.469703 TCCAAAGTCATTCATGCGCTG 59.530 47.619 9.73 4.58 0.00 5.18
646 718 1.468565 CCAAAGTCATTCATGCGCTGG 60.469 52.381 9.73 0.00 0.00 4.85
647 719 1.200716 CAAAGTCATTCATGCGCTGGT 59.799 47.619 9.73 0.00 0.00 4.00
648 720 0.806868 AAGTCATTCATGCGCTGGTG 59.193 50.000 9.73 5.24 0.00 4.17
649 721 0.321919 AGTCATTCATGCGCTGGTGT 60.322 50.000 9.73 0.00 0.00 4.16
650 722 1.066215 AGTCATTCATGCGCTGGTGTA 60.066 47.619 9.73 0.00 0.00 2.90
651 723 1.737236 GTCATTCATGCGCTGGTGTAA 59.263 47.619 9.73 2.74 0.00 2.41
652 724 2.355756 GTCATTCATGCGCTGGTGTAAT 59.644 45.455 9.73 4.79 0.00 1.89
653 725 3.016031 TCATTCATGCGCTGGTGTAATT 58.984 40.909 9.73 0.00 0.00 1.40
654 726 2.917701 TTCATGCGCTGGTGTAATTG 57.082 45.000 9.73 0.00 0.00 2.32
655 727 1.819928 TCATGCGCTGGTGTAATTGT 58.180 45.000 9.73 0.00 0.00 2.71
656 728 2.979240 TCATGCGCTGGTGTAATTGTA 58.021 42.857 9.73 0.00 0.00 2.41
657 729 3.339141 TCATGCGCTGGTGTAATTGTAA 58.661 40.909 9.73 0.00 0.00 2.41
658 730 3.944650 TCATGCGCTGGTGTAATTGTAAT 59.055 39.130 9.73 0.00 0.00 1.89
659 731 3.755965 TGCGCTGGTGTAATTGTAATG 57.244 42.857 9.73 0.00 0.00 1.90
660 732 2.421775 TGCGCTGGTGTAATTGTAATGG 59.578 45.455 9.73 0.00 0.00 3.16
661 733 2.794631 GCGCTGGTGTAATTGTAATGGC 60.795 50.000 0.00 0.00 0.00 4.40
662 734 2.421775 CGCTGGTGTAATTGTAATGGCA 59.578 45.455 0.00 0.00 0.00 4.92
663 735 3.730662 CGCTGGTGTAATTGTAATGGCAC 60.731 47.826 0.00 0.00 0.00 5.01
757 884 1.655484 TTACGCTCACTGCCATCATG 58.345 50.000 0.00 0.00 38.78 3.07
760 887 1.028330 CGCTCACTGCCATCATGGTT 61.028 55.000 5.31 0.00 40.46 3.67
762 889 0.454600 CTCACTGCCATCATGGTTGC 59.545 55.000 5.31 0.00 40.46 4.17
779 906 0.401356 TGCCAATCAAGTCTGCAGGA 59.599 50.000 15.13 3.03 0.00 3.86
793 920 1.555075 TGCAGGAGTCCTTATCCACAC 59.445 52.381 9.68 0.00 39.47 3.82
806 933 1.152984 CCACACCTGTCTGCCAACA 60.153 57.895 0.00 0.00 0.00 3.33
913 1041 3.363351 GAGTGTTCCTCCGTCCGT 58.637 61.111 0.00 0.00 33.79 4.69
983 1118 2.203252 CCACCAGCCCATCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
986 1121 1.995066 ACCAGCCCATCCATCGTCA 60.995 57.895 0.00 0.00 0.00 4.35
1223 1386 3.002371 GGCCTCTCCCTTCCTTGG 58.998 66.667 0.00 0.00 0.00 3.61
1310 1740 3.056328 GTGAAGCGGAACCAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
1405 1835 1.209019 GGTCAGCCATCACTCATCAGT 59.791 52.381 0.00 0.00 34.09 3.41
1406 1836 2.999117 GGTCAGCCATCACTCATCAGTG 60.999 54.545 0.00 0.00 42.19 3.66
1519 1952 4.137116 AGTTATCATCGCTAGTTTGGCA 57.863 40.909 0.00 0.00 0.00 4.92
1528 1961 2.414559 CGCTAGTTTGGCAATTGGACTG 60.415 50.000 11.55 4.45 0.00 3.51
1532 1965 0.968405 TTTGGCAATTGGACTGGCTC 59.032 50.000 7.72 0.00 39.94 4.70
1533 1966 0.178967 TTGGCAATTGGACTGGCTCA 60.179 50.000 7.72 0.00 39.94 4.26
1585 2018 0.035881 TTCACCCTGCAGCTCTGAAG 59.964 55.000 8.66 0.00 35.97 3.02
1592 2025 3.070734 CCCTGCAGCTCTGAAGTGTATAT 59.929 47.826 8.66 0.00 34.33 0.86
1593 2026 4.305769 CCTGCAGCTCTGAAGTGTATATC 58.694 47.826 8.66 0.00 34.33 1.63
1616 2053 4.939509 TCTTAGTAGTTGCCATTTTCGC 57.060 40.909 0.00 0.00 0.00 4.70
1631 2068 4.664150 TTTTCGCTTGAGAAAAATGGGT 57.336 36.364 9.22 0.00 44.25 4.51
1647 2084 0.109913 GGGTCCGAGTTTTTCACCCT 59.890 55.000 0.00 0.00 38.45 4.34
1661 2099 1.611491 TCACCCTGCGGCTTTAAAAAG 59.389 47.619 0.00 0.00 39.03 2.27
1670 2108 2.470983 GCTTTAAAAAGGCATGCCCA 57.529 45.000 33.14 10.69 36.53 5.36
1679 2117 2.530460 AGGCATGCCCATTTCACTAA 57.470 45.000 33.14 0.00 36.58 2.24
1697 2135 7.781548 TCACTAATTTTTAGAGTAATCCGGC 57.218 36.000 0.00 0.00 0.00 6.13
1705 2163 1.482593 AGAGTAATCCGGCAACCTCTG 59.517 52.381 11.26 0.00 0.00 3.35
1710 2168 1.247567 ATCCGGCAACCTCTGTTTTG 58.752 50.000 0.00 0.00 30.42 2.44
1712 2170 1.141254 TCCGGCAACCTCTGTTTTGTA 59.859 47.619 0.00 0.00 30.42 2.41
1713 2171 1.265905 CCGGCAACCTCTGTTTTGTAC 59.734 52.381 0.00 0.00 30.42 2.90
1740 2198 8.225603 TGCATCCTGATTTTCTAAATACCTTC 57.774 34.615 0.00 0.00 0.00 3.46
1771 2229 1.134280 AGAGAAGCATGGATTCCACGG 60.134 52.381 7.76 4.67 35.80 4.94
1773 2231 1.017387 GAAGCATGGATTCCACGGAC 58.983 55.000 7.76 0.00 35.80 4.79
1780 2238 0.108520 GGATTCCACGGACGCACTAA 60.109 55.000 0.00 0.00 0.00 2.24
1781 2239 0.997196 GATTCCACGGACGCACTAAC 59.003 55.000 0.00 0.00 0.00 2.34
1782 2240 0.606604 ATTCCACGGACGCACTAACT 59.393 50.000 0.00 0.00 0.00 2.24
1816 2303 4.037208 CAGAAAAGACACTGGATGCAAGTT 59.963 41.667 0.00 0.00 0.00 2.66
1819 2306 2.146342 AGACACTGGATGCAAGTTTCG 58.854 47.619 0.00 0.00 31.15 3.46
1823 2310 2.416547 CACTGGATGCAAGTTTCGGTAG 59.583 50.000 0.00 0.00 0.00 3.18
1825 2312 0.733150 GGATGCAAGTTTCGGTAGGC 59.267 55.000 0.00 0.00 0.00 3.93
1829 2316 2.627945 TGCAAGTTTCGGTAGGCTATG 58.372 47.619 0.00 0.00 0.00 2.23
1832 2319 1.108776 AGTTTCGGTAGGCTATGCGA 58.891 50.000 0.00 0.00 0.00 5.10
1833 2320 1.202382 AGTTTCGGTAGGCTATGCGAC 60.202 52.381 0.00 0.00 0.00 5.19
1835 2322 1.108776 TTCGGTAGGCTATGCGACTT 58.891 50.000 0.00 0.00 0.00 3.01
1841 2328 1.726853 AGGCTATGCGACTTTGTGAC 58.273 50.000 0.00 0.00 0.00 3.67
1851 2338 4.081761 GCGACTTTGTGACATAATTGACG 58.918 43.478 0.00 0.00 0.00 4.35
1852 2339 4.637968 CGACTTTGTGACATAATTGACGG 58.362 43.478 0.00 0.00 0.00 4.79
1853 2340 4.387559 CGACTTTGTGACATAATTGACGGA 59.612 41.667 0.00 0.00 0.00 4.69
1872 2359 3.255642 CGGAAACACCATTGTCTTCCAAT 59.744 43.478 13.96 0.00 44.73 3.16
1894 2381 2.938756 GCATATCTGTATCCTGCAGCCC 60.939 54.545 8.66 0.00 34.21 5.19
1906 2393 3.010144 CAGCCCACTGCCCCTAAT 58.990 61.111 0.00 0.00 42.71 1.73
1972 2460 7.765695 AACAAATGTCTTCATAGTTGTCCAT 57.234 32.000 0.00 0.00 35.35 3.41
2000 2488 0.249238 GGACTACGAGCTGCTGATGG 60.249 60.000 7.01 0.00 0.00 3.51
2009 2497 3.338249 GAGCTGCTGATGGTACTTTTCA 58.662 45.455 7.01 0.00 0.00 2.69
2077 2565 4.169856 TCAGGGGGAATAATTACTGGCATT 59.830 41.667 0.00 0.00 0.00 3.56
2128 2616 0.322098 TGGCCAATGACCCAACTACG 60.322 55.000 0.61 0.00 0.00 3.51
2155 2643 4.961099 GGGGGTACATACTATCCTATCACC 59.039 50.000 0.00 0.00 0.00 4.02
2233 2721 2.191128 ATCTTGTTGACAGTGGAGGC 57.809 50.000 0.00 0.00 0.00 4.70
2257 2745 1.633915 ATCTCCCCAAGCAGGCAGAG 61.634 60.000 0.00 6.98 37.52 3.35
2359 2847 5.993441 TGCAGTAGTTTTAGGTTCTTGTACC 59.007 40.000 0.00 0.00 38.53 3.34
2377 2865 1.741770 CGCTGGCGGGGCTTATATC 60.742 63.158 7.12 0.00 35.56 1.63
2422 2910 9.774413 AGTATAATAGTTAAGGGAAATGGAACG 57.226 33.333 0.00 0.00 0.00 3.95
2517 3008 8.722480 TTACATGTCCAAGTCTAAATGATCAG 57.278 34.615 0.00 0.00 0.00 2.90
2657 3148 4.102649 TGCTGTGTAATACGACTCGATTG 58.897 43.478 5.20 0.00 0.00 2.67
2667 3158 1.322936 CGACTCGATTGCTGCTCTTTC 59.677 52.381 0.00 0.00 0.00 2.62
2786 3277 7.831691 TTTCTTTTTCCATGTTCTACATCCA 57.168 32.000 0.00 0.00 36.53 3.41
2887 3378 6.696411 CATTCTATGGAGATTGGAGAGTACC 58.304 44.000 0.00 0.00 31.94 3.34
2898 3389 4.411256 TGGAGAGTACCGTTTGTTTCTT 57.589 40.909 0.00 0.00 0.00 2.52
2949 3491 3.287222 TCCAGACCCTTGTTTGTTTCTG 58.713 45.455 0.00 0.00 0.00 3.02
3014 3601 6.725364 CCATAGATGGCCCTTTTATGTATCT 58.275 40.000 0.00 0.43 41.75 1.98
3015 3602 7.177878 CCATAGATGGCCCTTTTATGTATCTT 58.822 38.462 0.00 0.00 41.75 2.40
3016 3603 7.671398 CCATAGATGGCCCTTTTATGTATCTTT 59.329 37.037 0.00 0.00 41.75 2.52
3096 3683 7.243487 CACTGTAAATTGCAATAGATGAACGT 58.757 34.615 13.39 0.50 0.00 3.99
3370 3957 3.825585 TCCTTTGCATTCTGTATTGTGCA 59.174 39.130 0.00 0.00 44.97 4.57
3406 3994 7.651304 TCAAATCTGTTTCATTTGCATTTACGT 59.349 29.630 0.00 0.00 39.92 3.57
3420 4008 4.797349 GCATTTACGTAGACACTAGTGACC 59.203 45.833 29.30 18.69 0.00 4.02
3669 4258 7.475840 CCTCCTATTCATCTACAAAACTTTGC 58.524 38.462 2.07 0.00 41.79 3.68
3703 4292 4.112634 TCAATGGAAAGTGGTTTAGCCT 57.887 40.909 0.00 0.00 38.35 4.58
3708 4297 3.138653 TGGAAAGTGGTTTAGCCTGGTTA 59.861 43.478 0.00 0.00 38.35 2.85
3709 4298 4.146564 GGAAAGTGGTTTAGCCTGGTTAA 58.853 43.478 0.00 0.00 38.35 2.01
3710 4299 4.585581 GGAAAGTGGTTTAGCCTGGTTAAA 59.414 41.667 11.16 11.16 38.35 1.52
3711 4300 5.069383 GGAAAGTGGTTTAGCCTGGTTAAAA 59.931 40.000 15.97 0.93 38.35 1.52
3712 4301 6.239487 GGAAAGTGGTTTAGCCTGGTTAAAAT 60.239 38.462 15.97 2.40 38.35 1.82
3774 4363 2.582498 GATCGCGAACACCCCTCG 60.582 66.667 15.24 0.00 39.33 4.63
3775 4364 3.352338 GATCGCGAACACCCCTCGT 62.352 63.158 15.24 0.00 38.57 4.18
3783 4372 0.834612 AACACCCCTCGTCTCACAAA 59.165 50.000 0.00 0.00 0.00 2.83
3857 4446 2.638556 TGGTTCCAACAACAACAACG 57.361 45.000 0.00 0.00 0.00 4.10
3859 4448 2.557056 TGGTTCCAACAACAACAACGAA 59.443 40.909 0.00 0.00 0.00 3.85
3862 4451 4.090786 GGTTCCAACAACAACAACGAAAAG 59.909 41.667 0.00 0.00 0.00 2.27
3863 4452 3.246619 TCCAACAACAACAACGAAAAGC 58.753 40.909 0.00 0.00 0.00 3.51
3865 4454 3.616379 CCAACAACAACAACGAAAAGCAT 59.384 39.130 0.00 0.00 0.00 3.79
3866 4455 4.492247 CCAACAACAACAACGAAAAGCATG 60.492 41.667 0.00 0.00 0.00 4.06
3867 4456 3.186119 ACAACAACAACGAAAAGCATGG 58.814 40.909 0.00 0.00 0.00 3.66
3934 4648 5.808366 TGATGGAGTCTAGTGTTTGAAGT 57.192 39.130 0.00 0.00 0.00 3.01
3951 4665 3.316029 TCCTAATGGACCGTGGGC 58.684 61.111 0.00 0.00 37.46 5.36
3966 4680 4.554036 GGCGCCTGAGGGACCATC 62.554 72.222 22.15 0.00 32.57 3.51
3967 4681 4.554036 GCGCCTGAGGGACCATCC 62.554 72.222 3.19 0.00 35.23 3.51
3968 4682 3.083349 CGCCTGAGGGACCATCCA 61.083 66.667 3.19 0.00 38.64 3.41
3969 4683 2.446848 CGCCTGAGGGACCATCCAT 61.447 63.158 3.19 0.00 38.64 3.41
3970 4684 1.150081 GCCTGAGGGACCATCCATG 59.850 63.158 3.19 0.00 38.64 3.66
3971 4685 1.639635 GCCTGAGGGACCATCCATGT 61.640 60.000 3.19 0.00 38.64 3.21
3972 4686 1.806496 CCTGAGGGACCATCCATGTA 58.194 55.000 3.19 0.00 38.64 2.29
3973 4687 2.342659 CCTGAGGGACCATCCATGTAT 58.657 52.381 3.19 0.00 38.64 2.29
3974 4688 2.713167 CCTGAGGGACCATCCATGTATT 59.287 50.000 3.19 0.00 38.64 1.89
3975 4689 3.139025 CCTGAGGGACCATCCATGTATTT 59.861 47.826 3.19 0.00 38.64 1.40
3976 4690 4.386761 CCTGAGGGACCATCCATGTATTTT 60.387 45.833 3.19 0.00 38.64 1.82
3977 4691 4.535781 TGAGGGACCATCCATGTATTTTG 58.464 43.478 3.19 0.00 38.64 2.44
3978 4692 4.229353 TGAGGGACCATCCATGTATTTTGA 59.771 41.667 3.19 0.00 38.64 2.69
3986 4700 3.616219 TCCATGTATTTTGAAGGGACCG 58.384 45.455 0.00 0.00 0.00 4.79
4182 4904 2.740055 CCACTGCACAGAGACCGC 60.740 66.667 4.31 0.00 0.00 5.68
4228 4951 1.547675 GGGCACAATTGAGTGAAGGGA 60.548 52.381 13.59 0.00 42.05 4.20
4240 4963 2.162681 GTGAAGGGACAGATTGTTGGG 58.837 52.381 0.00 0.00 0.00 4.12
4262 4985 4.382254 GGATAGTCCGACATTGGTTGTACA 60.382 45.833 0.40 0.00 39.18 2.90
4263 4986 3.040147 AGTCCGACATTGGTTGTACAG 57.960 47.619 0.40 0.00 39.18 2.74
4316 5039 1.344114 GCTAGCTTCTGGGGATGAGAG 59.656 57.143 7.70 0.00 0.00 3.20
4572 5364 7.456902 TCCCATTCTTGGTCTTAGTAAACTAGT 59.543 37.037 0.00 0.00 41.91 2.57
4592 5384 3.648545 AGTGTCCTAGTCTTGCTTCCTTT 59.351 43.478 0.00 0.00 0.00 3.11
4602 5394 2.892373 TGCTTCCTTTCGCATTTACG 57.108 45.000 0.00 0.00 0.00 3.18
4610 5402 0.801872 TTCGCATTTACGCAGCATGT 59.198 45.000 0.00 0.00 39.31 3.21
4692 5484 2.185004 TCTCTCTTTCGCCTTTTGGG 57.815 50.000 0.00 0.00 40.82 4.12
5005 5902 2.491675 GGTAAGACCTTTGGACCTGG 57.508 55.000 0.00 0.00 34.73 4.45
5024 5921 2.094803 TGGCATTGGCTACAAATTGTCG 60.095 45.455 11.84 0.00 40.55 4.35
5128 6025 7.442666 GGATATAGGTTATTAGGCAGCATTAGC 59.557 40.741 0.00 0.00 42.56 3.09
5177 6074 5.343325 GTGTTACTCAGCTGCAAATAAAAGC 59.657 40.000 9.47 0.00 37.20 3.51
5216 6113 6.476380 CACTTTGTTGTAGAAACATTGTGCAT 59.524 34.615 0.00 0.00 34.97 3.96
5236 6133 5.069648 TGCATGGTTGTTAGAAACATTTCCA 59.930 36.000 0.00 11.39 41.79 3.53
5326 6223 6.957631 TCAGTCCATCAAAAGGCTATTTAGA 58.042 36.000 0.00 0.00 0.00 2.10
5374 6272 4.597507 ACTGGACATTAAGAGGGAAACTGA 59.402 41.667 0.00 0.00 0.00 3.41
5382 6280 1.903183 AGAGGGAAACTGAGGTAGCAC 59.097 52.381 0.00 0.00 0.00 4.40
5388 6286 4.141711 GGGAAACTGAGGTAGCACATATCA 60.142 45.833 0.00 0.00 0.00 2.15
5405 6303 8.347771 GCACATATCAATCATGTTCTTGTACAT 58.652 33.333 0.00 0.00 39.27 2.29
5414 6312 5.872635 CATGTTCTTGTACATGTGGACATC 58.127 41.667 9.11 0.00 46.53 3.06
5442 6340 5.300286 GCACTGGTTTCTTATGGATATGCTT 59.700 40.000 0.00 0.00 0.00 3.91
5467 6365 3.406764 CTCAAACAAGAGCCAAGCTACT 58.593 45.455 0.00 0.00 39.88 2.57
5474 6372 2.104170 AGAGCCAAGCTACTACTGGTC 58.896 52.381 3.40 0.85 39.88 4.02
5481 6379 5.627040 GCCAAGCTACTACTGGTCTTAACAT 60.627 44.000 3.40 0.00 0.00 2.71
5518 6417 0.183492 TTCAGGCAGCTGGTGTTCTT 59.817 50.000 17.12 0.00 0.00 2.52
5625 6526 5.489792 TGCTGGTAGAAGATGAGACTTTT 57.510 39.130 0.00 0.00 0.00 2.27
5646 6547 5.344743 TTTTTGTTATGCAGTGGACCAAA 57.655 34.783 0.00 0.00 0.00 3.28
5685 6586 3.119096 GCCAAAGTCGTCGAGGCC 61.119 66.667 11.21 0.00 39.42 5.19
5763 6664 1.924731 TAGATCCCGCAGATACCAGG 58.075 55.000 0.00 0.00 34.42 4.45
5784 6685 1.886655 CGGGTTCTAAGCCTTTGCCTT 60.887 52.381 9.12 0.00 44.27 4.35
5813 6714 1.073199 CCAAGCCGGTTCCAGAAGT 59.927 57.895 1.90 0.00 0.00 3.01
5842 6743 1.880271 TGGCGTGTTCCGAATGTAAA 58.120 45.000 0.00 0.00 39.56 2.01
5844 6745 2.417239 TGGCGTGTTCCGAATGTAAATC 59.583 45.455 0.00 0.00 39.56 2.17
5845 6746 2.417239 GGCGTGTTCCGAATGTAAATCA 59.583 45.455 0.00 0.00 39.56 2.57
5847 6748 4.028383 GCGTGTTCCGAATGTAAATCATG 58.972 43.478 0.00 0.00 39.56 3.07
5848 6749 4.028383 CGTGTTCCGAATGTAAATCATGC 58.972 43.478 0.00 0.00 39.56 4.06
5849 6750 4.436718 CGTGTTCCGAATGTAAATCATGCA 60.437 41.667 0.00 0.00 39.56 3.96
5851 6752 5.456497 GTGTTCCGAATGTAAATCATGCATG 59.544 40.000 21.07 21.07 34.29 4.06
5852 6753 5.125257 TGTTCCGAATGTAAATCATGCATGT 59.875 36.000 25.43 9.95 34.29 3.21
5855 6756 8.503196 GTTCCGAATGTAAATCATGCATGTATA 58.497 33.333 25.43 14.11 34.29 1.47
5881 6796 6.806739 GTGCACATCCCTGTAAAATAAAACTC 59.193 38.462 13.17 0.00 33.14 3.01
5887 6802 7.448748 TCCCTGTAAAATAAAACTCTGCTTC 57.551 36.000 0.00 0.00 0.00 3.86
5888 6803 6.148811 TCCCTGTAAAATAAAACTCTGCTTCG 59.851 38.462 0.00 0.00 0.00 3.79
5898 6813 1.002430 ACTCTGCTTCGATGCTTCCAA 59.998 47.619 22.11 2.84 0.00 3.53
5899 6814 2.286872 CTCTGCTTCGATGCTTCCAAT 58.713 47.619 22.11 0.00 0.00 3.16
5929 6844 5.384063 TTGAAATGAGGCGCTTATTCAAA 57.616 34.783 18.72 8.83 0.00 2.69
5963 6878 1.271926 GGGAAACTTTGCTAGCCCTGA 60.272 52.381 13.29 0.00 32.78 3.86
5984 6899 7.364056 CCCTGATGTATTGATTTTGTCCATGTT 60.364 37.037 0.00 0.00 0.00 2.71
6012 6927 1.177401 GTGCTTGGAAGGGGCTAAAG 58.823 55.000 0.00 0.00 0.00 1.85
6013 6928 1.072266 TGCTTGGAAGGGGCTAAAGA 58.928 50.000 0.00 0.00 0.00 2.52
6014 6929 1.427368 TGCTTGGAAGGGGCTAAAGAA 59.573 47.619 0.00 0.00 0.00 2.52
6015 6930 2.158385 TGCTTGGAAGGGGCTAAAGAAA 60.158 45.455 0.00 0.00 0.00 2.52
6016 6931 2.897326 GCTTGGAAGGGGCTAAAGAAAA 59.103 45.455 0.00 0.00 0.00 2.29
6017 6932 3.323691 GCTTGGAAGGGGCTAAAGAAAAA 59.676 43.478 0.00 0.00 0.00 1.94
6018 6933 4.799586 GCTTGGAAGGGGCTAAAGAAAAAC 60.800 45.833 0.00 0.00 0.00 2.43
6019 6934 2.888414 TGGAAGGGGCTAAAGAAAAACG 59.112 45.455 0.00 0.00 0.00 3.60
6020 6935 2.889045 GGAAGGGGCTAAAGAAAAACGT 59.111 45.455 0.00 0.00 0.00 3.99
6021 6936 3.305131 GGAAGGGGCTAAAGAAAAACGTG 60.305 47.826 0.00 0.00 0.00 4.49
6022 6937 3.217681 AGGGGCTAAAGAAAAACGTGA 57.782 42.857 0.00 0.00 0.00 4.35
6023 6938 3.558033 AGGGGCTAAAGAAAAACGTGAA 58.442 40.909 0.00 0.00 0.00 3.18
6024 6939 3.955551 AGGGGCTAAAGAAAAACGTGAAA 59.044 39.130 0.00 0.00 0.00 2.69
6025 6940 4.587262 AGGGGCTAAAGAAAAACGTGAAAT 59.413 37.500 0.00 0.00 0.00 2.17
6026 6941 5.771165 AGGGGCTAAAGAAAAACGTGAAATA 59.229 36.000 0.00 0.00 0.00 1.40
6027 6942 6.072119 AGGGGCTAAAGAAAAACGTGAAATAG 60.072 38.462 0.00 0.00 0.00 1.73
6028 6943 6.294342 GGGGCTAAAGAAAAACGTGAAATAGT 60.294 38.462 0.00 0.00 0.00 2.12
6029 6944 7.143340 GGGCTAAAGAAAAACGTGAAATAGTT 58.857 34.615 0.00 0.00 0.00 2.24
6030 6945 8.291740 GGGCTAAAGAAAAACGTGAAATAGTTA 58.708 33.333 0.00 0.00 0.00 2.24
6031 6946 9.836076 GGCTAAAGAAAAACGTGAAATAGTTAT 57.164 29.630 0.00 0.00 0.00 1.89
6131 7048 1.925455 CTTCCCTCCCTCCTTGCCA 60.925 63.158 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.613260 TCCCTTCATCTTGTGTCCCG 59.387 55.000 0.00 0.00 0.00 5.14
135 139 5.370584 TCCATAATCAATCATGACCACTCCT 59.629 40.000 0.00 0.00 38.69 3.69
136 140 5.624159 TCCATAATCAATCATGACCACTCC 58.376 41.667 0.00 0.00 38.69 3.85
421 451 7.492669 TCGGCTTAATAATATGATAGCTGAAGC 59.507 37.037 4.42 0.00 40.09 3.86
457 487 4.112634 AGTGAGGCTTGGTTTTATGGAA 57.887 40.909 0.00 0.00 0.00 3.53
458 488 3.806949 AGTGAGGCTTGGTTTTATGGA 57.193 42.857 0.00 0.00 0.00 3.41
491 521 1.996191 GTGTTGCTCCGAGAATCTGTC 59.004 52.381 0.00 0.00 0.00 3.51
495 525 2.621338 TGATGTGTTGCTCCGAGAATC 58.379 47.619 0.00 0.00 0.00 2.52
509 539 7.095313 GCATGTACTATCCAGAAGATTGATGTG 60.095 40.741 0.00 0.00 36.33 3.21
510 540 6.933521 GCATGTACTATCCAGAAGATTGATGT 59.066 38.462 0.00 0.00 36.33 3.06
512 542 6.162079 CGCATGTACTATCCAGAAGATTGAT 58.838 40.000 0.00 0.00 36.33 2.57
513 543 5.509670 CCGCATGTACTATCCAGAAGATTGA 60.510 44.000 0.00 0.00 36.33 2.57
514 544 4.687948 CCGCATGTACTATCCAGAAGATTG 59.312 45.833 0.00 0.00 36.33 2.67
518 590 2.408050 GCCGCATGTACTATCCAGAAG 58.592 52.381 0.00 0.00 0.00 2.85
523 595 0.032952 TTCCGCCGCATGTACTATCC 59.967 55.000 0.00 0.00 0.00 2.59
524 596 1.726791 CATTCCGCCGCATGTACTATC 59.273 52.381 0.00 0.00 0.00 2.08
536 608 3.134127 GCTCCACCACATTCCGCC 61.134 66.667 0.00 0.00 0.00 6.13
543 615 4.574674 AATCTCTATTTGCTCCACCACA 57.425 40.909 0.00 0.00 0.00 4.17
544 616 5.703130 GGATAATCTCTATTTGCTCCACCAC 59.297 44.000 0.00 0.00 0.00 4.16
545 617 5.369404 TGGATAATCTCTATTTGCTCCACCA 59.631 40.000 0.00 0.00 29.22 4.17
547 619 5.411053 GCTGGATAATCTCTATTTGCTCCAC 59.589 44.000 0.00 0.00 30.25 4.02
548 620 5.072193 TGCTGGATAATCTCTATTTGCTCCA 59.928 40.000 0.00 0.00 31.49 3.86
549 621 5.555017 TGCTGGATAATCTCTATTTGCTCC 58.445 41.667 0.00 0.00 0.00 4.70
550 622 5.122082 GCTGCTGGATAATCTCTATTTGCTC 59.878 44.000 0.00 0.00 0.00 4.26
551 623 5.002516 GCTGCTGGATAATCTCTATTTGCT 58.997 41.667 0.00 0.00 0.00 3.91
552 624 4.155644 GGCTGCTGGATAATCTCTATTTGC 59.844 45.833 0.00 0.00 0.00 3.68
553 625 5.311265 TGGCTGCTGGATAATCTCTATTTG 58.689 41.667 0.00 0.00 0.00 2.32
554 626 5.573380 TGGCTGCTGGATAATCTCTATTT 57.427 39.130 0.00 0.00 0.00 1.40
555 627 5.573380 TTGGCTGCTGGATAATCTCTATT 57.427 39.130 0.00 0.00 0.00 1.73
556 628 5.775813 ATTGGCTGCTGGATAATCTCTAT 57.224 39.130 0.00 0.00 0.00 1.98
557 629 5.782331 AGTATTGGCTGCTGGATAATCTCTA 59.218 40.000 0.00 0.00 0.00 2.43
558 630 4.596643 AGTATTGGCTGCTGGATAATCTCT 59.403 41.667 0.00 0.00 0.00 3.10
559 631 4.904241 AGTATTGGCTGCTGGATAATCTC 58.096 43.478 0.00 0.00 0.00 2.75
560 632 4.989875 AGTATTGGCTGCTGGATAATCT 57.010 40.909 0.00 0.00 0.00 2.40
561 633 5.799213 AGTAGTATTGGCTGCTGGATAATC 58.201 41.667 0.00 0.00 30.36 1.75
562 634 5.567623 CGAGTAGTATTGGCTGCTGGATAAT 60.568 44.000 0.00 0.00 31.67 1.28
563 635 4.262036 CGAGTAGTATTGGCTGCTGGATAA 60.262 45.833 0.00 0.00 31.67 1.75
564 636 3.255888 CGAGTAGTATTGGCTGCTGGATA 59.744 47.826 0.00 0.00 31.67 2.59
565 637 2.036475 CGAGTAGTATTGGCTGCTGGAT 59.964 50.000 0.00 0.00 31.67 3.41
566 638 1.409064 CGAGTAGTATTGGCTGCTGGA 59.591 52.381 0.00 0.00 31.67 3.86
567 639 1.539065 CCGAGTAGTATTGGCTGCTGG 60.539 57.143 0.00 0.00 31.67 4.85
568 640 1.409064 TCCGAGTAGTATTGGCTGCTG 59.591 52.381 0.00 0.00 31.67 4.41
569 641 1.776662 TCCGAGTAGTATTGGCTGCT 58.223 50.000 0.00 0.00 34.18 4.24
570 642 2.821991 ATCCGAGTAGTATTGGCTGC 57.178 50.000 0.00 0.00 0.00 5.25
571 643 3.248602 GCAAATCCGAGTAGTATTGGCTG 59.751 47.826 0.00 0.00 0.00 4.85
572 644 3.467803 GCAAATCCGAGTAGTATTGGCT 58.532 45.455 0.00 0.00 0.00 4.75
573 645 2.548480 GGCAAATCCGAGTAGTATTGGC 59.452 50.000 0.00 0.00 36.43 4.52
574 646 3.804036 TGGCAAATCCGAGTAGTATTGG 58.196 45.455 0.00 0.00 37.80 3.16
575 647 4.876107 AGTTGGCAAATCCGAGTAGTATTG 59.124 41.667 0.00 0.00 37.80 1.90
576 648 5.099042 AGTTGGCAAATCCGAGTAGTATT 57.901 39.130 0.00 0.00 37.80 1.89
577 649 4.694339 GAGTTGGCAAATCCGAGTAGTAT 58.306 43.478 16.35 0.00 37.80 2.12
578 650 3.428452 CGAGTTGGCAAATCCGAGTAGTA 60.428 47.826 20.59 0.00 37.80 1.82
579 651 2.674177 CGAGTTGGCAAATCCGAGTAGT 60.674 50.000 20.59 0.00 37.80 2.73
580 652 1.927174 CGAGTTGGCAAATCCGAGTAG 59.073 52.381 20.59 3.12 37.80 2.57
581 653 2.004583 CGAGTTGGCAAATCCGAGTA 57.995 50.000 20.59 0.00 37.80 2.59
582 654 1.298859 GCGAGTTGGCAAATCCGAGT 61.299 55.000 20.59 0.00 37.80 4.18
583 655 1.298157 TGCGAGTTGGCAAATCCGAG 61.298 55.000 20.59 9.07 40.59 4.63
584 656 1.302112 TGCGAGTTGGCAAATCCGA 60.302 52.632 20.59 5.72 40.59 4.55
585 657 3.262936 TGCGAGTTGGCAAATCCG 58.737 55.556 20.59 16.16 40.59 4.18
591 663 2.032634 GGATCGTTGCGAGTTGGCA 61.033 57.895 0.00 0.00 39.91 4.92
592 664 1.369091 ATGGATCGTTGCGAGTTGGC 61.369 55.000 0.00 0.00 39.91 4.52
593 665 0.652592 GATGGATCGTTGCGAGTTGG 59.347 55.000 0.00 0.00 39.91 3.77
594 666 1.645034 AGATGGATCGTTGCGAGTTG 58.355 50.000 0.00 0.00 39.91 3.16
595 667 3.187700 GTTAGATGGATCGTTGCGAGTT 58.812 45.455 0.00 0.00 39.91 3.01
596 668 2.794981 CGTTAGATGGATCGTTGCGAGT 60.795 50.000 0.00 0.00 39.91 4.18
597 669 1.781429 CGTTAGATGGATCGTTGCGAG 59.219 52.381 0.00 0.00 39.91 5.03
598 670 1.535226 CCGTTAGATGGATCGTTGCGA 60.535 52.381 0.00 0.00 41.13 5.10
599 671 0.852777 CCGTTAGATGGATCGTTGCG 59.147 55.000 0.00 0.00 0.00 4.85
600 672 1.859080 GACCGTTAGATGGATCGTTGC 59.141 52.381 0.00 0.00 0.00 4.17
601 673 3.159353 TGACCGTTAGATGGATCGTTG 57.841 47.619 0.00 0.00 0.00 4.10
602 674 3.880047 TTGACCGTTAGATGGATCGTT 57.120 42.857 0.00 0.00 0.00 3.85
603 675 3.132289 ACATTGACCGTTAGATGGATCGT 59.868 43.478 0.00 0.00 0.00 3.73
604 676 3.717707 ACATTGACCGTTAGATGGATCG 58.282 45.455 0.00 0.00 0.00 3.69
605 677 4.058817 GGACATTGACCGTTAGATGGATC 58.941 47.826 0.00 0.00 0.00 3.36
606 678 3.454447 TGGACATTGACCGTTAGATGGAT 59.546 43.478 0.80 0.00 0.00 3.41
607 679 2.835156 TGGACATTGACCGTTAGATGGA 59.165 45.455 0.80 0.00 0.00 3.41
608 680 3.260475 TGGACATTGACCGTTAGATGG 57.740 47.619 0.80 0.00 0.00 3.51
609 681 4.695455 ACTTTGGACATTGACCGTTAGATG 59.305 41.667 0.80 0.00 0.00 2.90
610 682 4.906618 ACTTTGGACATTGACCGTTAGAT 58.093 39.130 0.80 0.00 0.00 1.98
611 683 4.202274 TGACTTTGGACATTGACCGTTAGA 60.202 41.667 0.80 0.00 0.00 2.10
612 684 4.062293 TGACTTTGGACATTGACCGTTAG 58.938 43.478 0.80 1.24 0.00 2.34
613 685 4.074627 TGACTTTGGACATTGACCGTTA 57.925 40.909 0.80 0.00 0.00 3.18
614 686 2.925724 TGACTTTGGACATTGACCGTT 58.074 42.857 0.80 0.00 0.00 4.44
615 687 2.631160 TGACTTTGGACATTGACCGT 57.369 45.000 0.80 0.00 0.00 4.83
616 688 3.501828 TGAATGACTTTGGACATTGACCG 59.498 43.478 0.00 0.00 37.78 4.79
617 689 5.404946 CATGAATGACTTTGGACATTGACC 58.595 41.667 0.00 0.00 37.78 4.02
618 690 4.860907 GCATGAATGACTTTGGACATTGAC 59.139 41.667 0.00 0.00 37.78 3.18
619 691 4.379708 CGCATGAATGACTTTGGACATTGA 60.380 41.667 0.00 0.00 37.78 2.57
620 692 3.855379 CGCATGAATGACTTTGGACATTG 59.145 43.478 0.00 0.00 37.78 2.82
621 693 3.674138 GCGCATGAATGACTTTGGACATT 60.674 43.478 0.30 0.00 39.64 2.71
622 694 2.159338 GCGCATGAATGACTTTGGACAT 60.159 45.455 0.30 0.00 0.00 3.06
623 695 1.199789 GCGCATGAATGACTTTGGACA 59.800 47.619 0.30 0.00 0.00 4.02
624 696 1.470098 AGCGCATGAATGACTTTGGAC 59.530 47.619 11.47 0.00 0.00 4.02
625 697 1.469703 CAGCGCATGAATGACTTTGGA 59.530 47.619 11.47 0.00 0.00 3.53
626 698 1.468565 CCAGCGCATGAATGACTTTGG 60.469 52.381 11.47 0.00 0.00 3.28
627 699 1.200716 ACCAGCGCATGAATGACTTTG 59.799 47.619 11.47 0.00 0.00 2.77
628 700 1.200716 CACCAGCGCATGAATGACTTT 59.799 47.619 11.47 0.00 0.00 2.66
629 701 0.806868 CACCAGCGCATGAATGACTT 59.193 50.000 11.47 0.00 0.00 3.01
630 702 0.321919 ACACCAGCGCATGAATGACT 60.322 50.000 11.47 0.00 0.00 3.41
631 703 1.368641 TACACCAGCGCATGAATGAC 58.631 50.000 11.47 0.00 0.00 3.06
632 704 2.106477 TTACACCAGCGCATGAATGA 57.894 45.000 11.47 0.00 0.00 2.57
633 705 3.110358 CAATTACACCAGCGCATGAATG 58.890 45.455 11.47 9.40 0.00 2.67
634 706 2.754552 ACAATTACACCAGCGCATGAAT 59.245 40.909 11.47 4.49 0.00 2.57
635 707 2.158559 ACAATTACACCAGCGCATGAA 58.841 42.857 11.47 2.31 0.00 2.57
636 708 1.819928 ACAATTACACCAGCGCATGA 58.180 45.000 11.47 0.00 0.00 3.07
637 709 3.755965 TTACAATTACACCAGCGCATG 57.244 42.857 11.47 7.56 0.00 4.06
638 710 3.066621 CCATTACAATTACACCAGCGCAT 59.933 43.478 11.47 0.00 0.00 4.73
639 711 2.421775 CCATTACAATTACACCAGCGCA 59.578 45.455 11.47 0.00 0.00 6.09
640 712 2.794631 GCCATTACAATTACACCAGCGC 60.795 50.000 0.00 0.00 0.00 5.92
641 713 2.421775 TGCCATTACAATTACACCAGCG 59.578 45.455 0.00 0.00 0.00 5.18
642 714 3.192422 TGTGCCATTACAATTACACCAGC 59.808 43.478 0.00 0.00 0.00 4.85
643 715 4.699735 TCTGTGCCATTACAATTACACCAG 59.300 41.667 0.00 0.00 0.00 4.00
644 716 4.657013 TCTGTGCCATTACAATTACACCA 58.343 39.130 0.00 0.00 0.00 4.17
645 717 5.637006 TTCTGTGCCATTACAATTACACC 57.363 39.130 0.00 0.00 0.00 4.16
646 718 7.367285 TCTTTTCTGTGCCATTACAATTACAC 58.633 34.615 0.00 0.00 0.00 2.90
647 719 7.517614 TCTTTTCTGTGCCATTACAATTACA 57.482 32.000 0.00 0.00 0.00 2.41
648 720 8.699749 GTTTCTTTTCTGTGCCATTACAATTAC 58.300 33.333 0.00 0.00 0.00 1.89
649 721 7.593273 CGTTTCTTTTCTGTGCCATTACAATTA 59.407 33.333 0.00 0.00 0.00 1.40
650 722 6.420604 CGTTTCTTTTCTGTGCCATTACAATT 59.579 34.615 0.00 0.00 0.00 2.32
651 723 5.920273 CGTTTCTTTTCTGTGCCATTACAAT 59.080 36.000 0.00 0.00 0.00 2.71
652 724 5.163602 ACGTTTCTTTTCTGTGCCATTACAA 60.164 36.000 0.00 0.00 0.00 2.41
653 725 4.336993 ACGTTTCTTTTCTGTGCCATTACA 59.663 37.500 0.00 0.00 0.00 2.41
654 726 4.855531 ACGTTTCTTTTCTGTGCCATTAC 58.144 39.130 0.00 0.00 0.00 1.89
655 727 6.621316 TTACGTTTCTTTTCTGTGCCATTA 57.379 33.333 0.00 0.00 0.00 1.90
656 728 5.508200 TTACGTTTCTTTTCTGTGCCATT 57.492 34.783 0.00 0.00 0.00 3.16
657 729 5.067283 AGTTTACGTTTCTTTTCTGTGCCAT 59.933 36.000 0.00 0.00 0.00 4.40
658 730 4.396790 AGTTTACGTTTCTTTTCTGTGCCA 59.603 37.500 0.00 0.00 0.00 4.92
659 731 4.916870 AGTTTACGTTTCTTTTCTGTGCC 58.083 39.130 0.00 0.00 0.00 5.01
660 732 7.349711 TCATAGTTTACGTTTCTTTTCTGTGC 58.650 34.615 0.00 0.00 0.00 4.57
661 733 9.710979 TTTCATAGTTTACGTTTCTTTTCTGTG 57.289 29.630 0.00 0.00 0.00 3.66
669 741 9.893305 CTTCCAAATTTCATAGTTTACGTTTCT 57.107 29.630 0.00 0.00 0.00 2.52
670 742 9.887406 TCTTCCAAATTTCATAGTTTACGTTTC 57.113 29.630 0.00 0.00 0.00 2.78
715 787 7.437793 AATGCACTTGGTTTCCAATTTATTG 57.562 32.000 1.58 0.00 43.07 1.90
724 796 1.977188 GCGTAATGCACTTGGTTTCC 58.023 50.000 0.00 0.00 45.45 3.13
757 884 0.961019 TGCAGACTTGATTGGCAACC 59.039 50.000 0.00 0.00 31.96 3.77
760 887 0.401356 TCCTGCAGACTTGATTGGCA 59.599 50.000 17.39 0.00 0.00 4.92
762 889 2.354259 GACTCCTGCAGACTTGATTGG 58.646 52.381 17.39 0.00 0.00 3.16
779 906 2.834549 CAGACAGGTGTGGATAAGGACT 59.165 50.000 0.00 0.00 0.00 3.85
793 920 0.892358 ATGCTGTGTTGGCAGACAGG 60.892 55.000 22.78 11.76 43.15 4.00
806 933 0.748367 CTGCTCTGATGCCATGCTGT 60.748 55.000 0.00 0.00 0.00 4.40
853 981 5.007234 GGATATCGATCGATCTACAGAGTGG 59.993 48.000 32.50 4.50 36.17 4.00
879 1007 4.514577 CCCGCACGGAAGCTCGAT 62.515 66.667 11.42 0.00 37.50 3.59
910 1038 2.298610 TGCCTCTCTGTATACTGACGG 58.701 52.381 8.27 11.92 0.00 4.79
911 1039 3.364465 CGATGCCTCTCTGTATACTGACG 60.364 52.174 8.27 5.56 0.00 4.35
912 1040 3.610585 GCGATGCCTCTCTGTATACTGAC 60.611 52.174 8.27 0.71 0.00 3.51
913 1041 2.554462 GCGATGCCTCTCTGTATACTGA 59.446 50.000 11.47 11.47 0.00 3.41
1208 1368 2.684499 GGGCCAAGGAAGGGAGAGG 61.684 68.421 4.39 0.00 0.00 3.69
1405 1835 0.188587 AGGGGTCTGTCTCACTGTCA 59.811 55.000 0.00 0.00 0.00 3.58
1406 1836 1.343069 AAGGGGTCTGTCTCACTGTC 58.657 55.000 0.00 0.00 0.00 3.51
1407 1837 1.807814 AAAGGGGTCTGTCTCACTGT 58.192 50.000 0.00 0.00 0.00 3.55
1519 1952 3.896888 TCAAAATGTGAGCCAGTCCAATT 59.103 39.130 0.00 0.00 0.00 2.32
1528 1961 2.091541 TCGGGAATCAAAATGTGAGCC 58.908 47.619 0.00 0.00 40.43 4.70
1532 1965 6.168164 CCATTTTTCGGGAATCAAAATGTG 57.832 37.500 13.00 4.34 42.54 3.21
1585 2018 9.765795 AATGGCAACTACTAAGAAGATATACAC 57.234 33.333 0.00 0.00 37.61 2.90
1592 2025 5.121768 GCGAAAATGGCAACTACTAAGAAGA 59.878 40.000 0.00 0.00 37.61 2.87
1593 2026 5.122396 AGCGAAAATGGCAACTACTAAGAAG 59.878 40.000 0.00 0.00 37.61 2.85
1616 2053 3.412386 ACTCGGACCCATTTTTCTCAAG 58.588 45.455 0.00 0.00 0.00 3.02
1627 2064 0.179012 GGGTGAAAAACTCGGACCCA 60.179 55.000 0.00 0.00 45.03 4.51
1631 2068 0.882927 CGCAGGGTGAAAAACTCGGA 60.883 55.000 0.00 0.00 32.83 4.55
1647 2084 1.938926 GCATGCCTTTTTAAAGCCGCA 60.939 47.619 6.36 8.07 37.51 5.69
1661 2099 3.825143 AATTAGTGAAATGGGCATGCC 57.175 42.857 29.47 29.47 0.00 4.40
1679 2117 5.506708 AGGTTGCCGGATTACTCTAAAAAT 58.493 37.500 5.05 0.00 0.00 1.82
1694 2132 1.944024 TGTACAAAACAGAGGTTGCCG 59.056 47.619 0.00 0.00 37.30 5.69
1695 2133 3.857010 GCATGTACAAAACAGAGGTTGCC 60.857 47.826 0.00 0.00 42.70 4.52
1697 2135 4.566545 TGCATGTACAAAACAGAGGTTG 57.433 40.909 0.00 0.00 42.70 3.77
1705 2163 7.092716 AGAAAATCAGGATGCATGTACAAAAC 58.907 34.615 2.46 0.00 34.76 2.43
1710 2168 9.884465 GTATTTAGAAAATCAGGATGCATGTAC 57.116 33.333 2.46 0.00 34.76 2.90
1712 2170 7.781693 AGGTATTTAGAAAATCAGGATGCATGT 59.218 33.333 2.46 0.00 34.76 3.21
1713 2171 8.174733 AGGTATTTAGAAAATCAGGATGCATG 57.825 34.615 2.46 0.00 34.76 4.06
1747 2205 4.818546 CGTGGAATCCATGCTTCTCTATTT 59.181 41.667 8.76 0.00 35.28 1.40
1755 2213 0.744414 CGTCCGTGGAATCCATGCTT 60.744 55.000 15.84 0.00 39.07 3.91
1766 2224 0.524862 ACTAGTTAGTGCGTCCGTGG 59.475 55.000 0.00 0.00 34.72 4.94
1771 2229 7.637229 TCTGATGTATTACTAGTTAGTGCGTC 58.363 38.462 0.00 3.30 37.10 5.19
1773 2231 8.851960 TTTCTGATGTATTACTAGTTAGTGCG 57.148 34.615 0.00 0.00 37.10 5.34
1780 2238 9.862371 CAGTGTCTTTTCTGATGTATTACTAGT 57.138 33.333 0.00 0.00 34.02 2.57
1781 2239 9.307121 CCAGTGTCTTTTCTGATGTATTACTAG 57.693 37.037 0.00 0.00 34.02 2.57
1782 2240 9.031537 TCCAGTGTCTTTTCTGATGTATTACTA 57.968 33.333 0.00 0.00 34.02 1.82
1816 2303 1.108776 AAGTCGCATAGCCTACCGAA 58.891 50.000 0.00 0.00 0.00 4.30
1819 2306 1.933853 CACAAAGTCGCATAGCCTACC 59.066 52.381 0.00 0.00 0.00 3.18
1823 2310 1.438651 TGTCACAAAGTCGCATAGCC 58.561 50.000 0.00 0.00 0.00 3.93
1825 2312 6.901887 GTCAATTATGTCACAAAGTCGCATAG 59.098 38.462 0.00 0.00 0.00 2.23
1829 2316 4.081761 CGTCAATTATGTCACAAAGTCGC 58.918 43.478 0.00 0.00 0.00 5.19
1832 2319 6.038825 TGTTTCCGTCAATTATGTCACAAAGT 59.961 34.615 0.00 0.00 0.00 2.66
1833 2320 6.359617 GTGTTTCCGTCAATTATGTCACAAAG 59.640 38.462 0.00 0.00 0.00 2.77
1835 2322 5.278071 GGTGTTTCCGTCAATTATGTCACAA 60.278 40.000 0.00 0.00 0.00 3.33
1841 2328 5.708948 ACAATGGTGTTTCCGTCAATTATG 58.291 37.500 0.00 0.00 39.52 1.90
1872 2359 2.289882 GGCTGCAGGATACAGATATGCA 60.290 50.000 17.12 0.00 44.10 3.96
1873 2360 2.354259 GGCTGCAGGATACAGATATGC 58.646 52.381 17.12 0.00 37.32 3.14
1880 2367 1.603842 CAGTGGGCTGCAGGATACA 59.396 57.895 17.12 0.00 35.77 2.29
1881 2368 4.547859 CAGTGGGCTGCAGGATAC 57.452 61.111 17.12 0.00 35.77 2.24
1894 2381 4.780815 TGTCTGAATAATTAGGGGCAGTG 58.219 43.478 0.00 0.00 0.00 3.66
1957 2445 6.348786 CCACAACAAGATGGACAACTATGAAG 60.349 42.308 0.00 0.00 38.34 3.02
1972 2460 1.961394 AGCTCGTAGTCCACAACAAGA 59.039 47.619 0.00 0.00 0.00 3.02
1987 2475 2.015736 AAAGTACCATCAGCAGCTCG 57.984 50.000 0.00 0.00 0.00 5.03
2000 2488 6.363357 CCTGCAAGCTTTATTGTGAAAAGTAC 59.637 38.462 0.00 0.00 36.52 2.73
2009 2497 4.592942 TCAGATCCTGCAAGCTTTATTGT 58.407 39.130 0.00 0.00 32.56 2.71
2077 2565 0.320374 GTCGTCCATGAACAGGTCCA 59.680 55.000 0.00 0.00 0.00 4.02
2155 2643 0.454957 CCCGCAGATGCTTTTTGACG 60.455 55.000 2.95 0.00 39.32 4.35
2233 2721 0.533755 CCTGCTTGGGGAGATTAGCG 60.534 60.000 0.00 0.00 32.36 4.26
2257 2745 0.249955 TATCACGGTCGGGGAAAACC 59.750 55.000 0.00 0.00 39.11 3.27
2299 2787 3.257469 TCTGCAGACATCTTAGCTTGG 57.743 47.619 13.74 0.00 0.00 3.61
2359 2847 1.741770 GATATAAGCCCCGCCAGCG 60.742 63.158 4.75 4.75 39.44 5.18
2377 2865 1.136305 CTTTCATCAGCCATTGCAGGG 59.864 52.381 2.26 2.26 41.13 4.45
2422 2910 3.244596 GGGGTGGACCAGCTAGAAATATC 60.245 52.174 22.45 3.18 42.91 1.63
2513 3004 4.315588 GCAGCCTGCAGAACTGAT 57.684 55.556 29.83 6.75 44.26 2.90
2641 3132 3.372954 AGCAGCAATCGAGTCGTATTAC 58.627 45.455 13.12 6.19 0.00 1.89
2667 3158 5.955488 ACGATCCTCCATTCGTTATATCTG 58.045 41.667 0.00 0.00 45.62 2.90
2786 3277 1.364901 CTGGACGTGTACCACCGTT 59.635 57.895 0.00 0.00 33.57 4.44
2887 3378 8.673711 TCAAATATATCAGGGAAGAAACAAACG 58.326 33.333 0.00 0.00 0.00 3.60
2898 3389 8.888836 ATTTGCATGATCAAATATATCAGGGA 57.111 30.769 0.00 0.00 42.82 4.20
2949 3491 6.519679 TTGCATGATCAAATATATCAGGGC 57.480 37.500 0.00 0.00 36.82 5.19
3096 3683 2.046023 CCCAGCGCAAGACCATGA 60.046 61.111 11.47 0.00 43.02 3.07
3370 3957 5.904941 TGAAACAGATTTGAGTTGCACAAT 58.095 33.333 0.00 0.00 28.49 2.71
3406 3994 3.553508 GCAAAACCGGTCACTAGTGTCTA 60.554 47.826 21.99 0.30 0.00 2.59
3420 4008 1.533756 CCGCATATCCTTGCAAAACCG 60.534 52.381 0.00 0.00 42.91 4.44
3669 4258 6.089820 CACTTTCCATTGAAATGACGGAAATG 59.910 38.462 4.58 0.00 39.65 2.32
3774 4363 3.730715 CGTCAAAAGCCAATTTGTGAGAC 59.269 43.478 7.00 0.00 40.40 3.36
3775 4364 3.243367 CCGTCAAAAGCCAATTTGTGAGA 60.243 43.478 7.00 0.00 40.40 3.27
3783 4372 3.383185 TCTTTTCACCGTCAAAAGCCAAT 59.617 39.130 2.92 0.00 39.66 3.16
3857 4446 2.224018 TGCTGTTGGAACCATGCTTTTC 60.224 45.455 12.32 0.00 0.00 2.29
3859 4448 1.412079 TGCTGTTGGAACCATGCTTT 58.588 45.000 12.32 0.00 0.00 3.51
3862 4451 0.388659 TGTTGCTGTTGGAACCATGC 59.611 50.000 0.00 1.32 42.72 4.06
3863 4452 2.159128 TGTTGTTGCTGTTGGAACCATG 60.159 45.455 0.00 0.00 42.72 3.66
3865 4454 1.550327 TGTTGTTGCTGTTGGAACCA 58.450 45.000 0.00 0.00 42.72 3.67
3866 4455 2.663826 TTGTTGTTGCTGTTGGAACC 57.336 45.000 0.00 0.00 42.72 3.62
3867 4456 4.668941 GCTTTTTGTTGTTGCTGTTGGAAC 60.669 41.667 0.00 0.00 43.50 3.62
3934 4648 2.727392 CGCCCACGGTCCATTAGGA 61.727 63.158 0.00 0.00 37.31 2.94
3951 4665 2.446848 ATGGATGGTCCCTCAGGCG 61.447 63.158 0.00 0.00 35.03 5.52
3957 4671 4.879295 TCAAAATACATGGATGGTCCCT 57.121 40.909 0.00 0.00 35.03 4.20
3958 4672 4.342092 CCTTCAAAATACATGGATGGTCCC 59.658 45.833 0.00 0.00 35.03 4.46
3959 4673 4.342092 CCCTTCAAAATACATGGATGGTCC 59.658 45.833 0.00 0.00 36.96 4.46
3960 4674 5.067805 GTCCCTTCAAAATACATGGATGGTC 59.932 44.000 0.00 0.00 0.00 4.02
3961 4675 4.956075 GTCCCTTCAAAATACATGGATGGT 59.044 41.667 0.00 0.00 0.00 3.55
3962 4676 4.342092 GGTCCCTTCAAAATACATGGATGG 59.658 45.833 0.00 0.00 0.00 3.51
3963 4677 4.036734 CGGTCCCTTCAAAATACATGGATG 59.963 45.833 0.00 0.00 0.00 3.51
3964 4678 4.207165 CGGTCCCTTCAAAATACATGGAT 58.793 43.478 0.00 0.00 0.00 3.41
3965 4679 3.009695 ACGGTCCCTTCAAAATACATGGA 59.990 43.478 0.00 0.00 0.00 3.41
3966 4680 3.352648 ACGGTCCCTTCAAAATACATGG 58.647 45.455 0.00 0.00 0.00 3.66
3967 4681 3.377172 GGACGGTCCCTTCAAAATACATG 59.623 47.826 16.55 0.00 0.00 3.21
3968 4682 3.009695 TGGACGGTCCCTTCAAAATACAT 59.990 43.478 23.81 0.00 35.03 2.29
3969 4683 2.372504 TGGACGGTCCCTTCAAAATACA 59.627 45.455 23.81 0.00 35.03 2.29
3970 4684 3.062122 TGGACGGTCCCTTCAAAATAC 57.938 47.619 23.81 0.00 35.03 1.89
3971 4685 3.009695 ACATGGACGGTCCCTTCAAAATA 59.990 43.478 23.81 2.60 35.03 1.40
3972 4686 2.225017 ACATGGACGGTCCCTTCAAAAT 60.225 45.455 23.81 6.41 35.03 1.82
3973 4687 1.144093 ACATGGACGGTCCCTTCAAAA 59.856 47.619 23.81 4.12 35.03 2.44
3974 4688 0.768622 ACATGGACGGTCCCTTCAAA 59.231 50.000 23.81 4.88 35.03 2.69
3975 4689 1.646912 TACATGGACGGTCCCTTCAA 58.353 50.000 23.81 5.65 35.03 2.69
3976 4690 1.874129 ATACATGGACGGTCCCTTCA 58.126 50.000 23.81 6.04 35.03 3.02
3977 4691 3.277142 AAATACATGGACGGTCCCTTC 57.723 47.619 23.81 0.00 35.03 3.46
3978 4692 3.009695 TCAAAATACATGGACGGTCCCTT 59.990 43.478 23.81 9.19 35.03 3.95
3986 4700 3.096092 TGCCCCTTCAAAATACATGGAC 58.904 45.455 0.00 0.00 0.00 4.02
4111 4833 4.240096 CCAACCAAACTCTTGATGATTGC 58.760 43.478 0.00 0.00 34.14 3.56
4182 4904 1.843851 TGCCCCTTTACTGTAGATGGG 59.156 52.381 12.55 12.55 34.58 4.00
4216 4939 4.136796 CAACAATCTGTCCCTTCACTCAA 58.863 43.478 0.00 0.00 0.00 3.02
4228 4951 3.104512 TCGGACTATCCCAACAATCTGT 58.895 45.455 0.00 0.00 31.13 3.41
4240 4963 4.751060 TGTACAACCAATGTCGGACTATC 58.249 43.478 9.88 0.00 42.70 2.08
4316 5039 8.547967 TCATACTGTTGGACTGTAAAAGATTC 57.452 34.615 2.65 0.00 36.38 2.52
4572 5364 3.306088 CGAAAGGAAGCAAGACTAGGACA 60.306 47.826 0.00 0.00 0.00 4.02
4588 5380 0.167908 TGCTGCGTAAATGCGAAAGG 59.832 50.000 0.00 0.00 37.81 3.11
4592 5384 0.373370 GACATGCTGCGTAAATGCGA 59.627 50.000 0.00 0.00 37.81 5.10
4610 5402 5.508657 GCTCTACTCATGCTATGTCATGTGA 60.509 44.000 14.07 0.00 43.18 3.58
4692 5484 3.495753 ACCCAACGAGAACATACGAAAAC 59.504 43.478 0.00 0.00 0.00 2.43
4833 5730 9.372369 GGAACCTGTGCAGAAATATAGATATAC 57.628 37.037 0.02 0.00 0.00 1.47
5005 5902 3.216147 ACGACAATTTGTAGCCAATGC 57.784 42.857 9.25 0.00 37.95 3.56
5105 6002 7.038302 ACTGCTAATGCTGCCTAATAACCTATA 60.038 37.037 0.00 0.00 41.07 1.31
5128 6025 6.349115 CCTGAGATTCTTCACATTTTGGACTG 60.349 42.308 0.00 0.00 0.00 3.51
5177 6074 2.294233 ACAAAGTGTAACATGCTGGCTG 59.706 45.455 0.00 0.00 41.43 4.85
5188 6085 7.486551 GCACAATGTTTCTACAACAAAGTGTAA 59.513 33.333 17.11 0.00 39.26 2.41
5216 6113 6.015519 CCTCATGGAAATGTTTCTAACAACCA 60.016 38.462 14.05 14.05 42.50 3.67
5236 6133 3.866379 TTGCCTGGTTGCGCCTCAT 62.866 57.895 4.18 0.00 38.35 2.90
5301 6198 7.402054 TCTAAATAGCCTTTTGATGGACTGAA 58.598 34.615 0.00 0.00 0.00 3.02
5326 6223 4.460382 CACATGCCTAGGAGACACAAAAAT 59.540 41.667 14.75 0.00 0.00 1.82
5374 6272 6.835174 AGAACATGATTGATATGTGCTACCT 58.165 36.000 0.00 0.00 41.54 3.08
5405 6303 1.133823 ACCAGTGCAAAGATGTCCACA 60.134 47.619 0.00 0.00 0.00 4.17
5409 6307 4.574599 AAGAAACCAGTGCAAAGATGTC 57.425 40.909 0.00 0.00 0.00 3.06
5414 6312 5.649782 ATCCATAAGAAACCAGTGCAAAG 57.350 39.130 0.00 0.00 0.00 2.77
5518 6417 4.724399 TGTTGTTCTTCTCTATTTGGGCA 58.276 39.130 0.00 0.00 0.00 5.36
5625 6526 4.646945 TCTTTGGTCCACTGCATAACAAAA 59.353 37.500 0.00 0.00 0.00 2.44
5685 6586 2.743183 CGGGCTTCCTTCCTTGTCATAG 60.743 54.545 0.00 0.00 0.00 2.23
5763 6664 1.506718 GCAAAGGCTTAGAACCCGC 59.493 57.895 0.00 0.00 36.96 6.13
5832 6733 7.959109 CACTATACATGCATGATTTACATTCGG 59.041 37.037 32.75 11.22 37.07 4.30
5847 6748 2.810274 CAGGGATGTGCACTATACATGC 59.190 50.000 19.41 7.79 43.50 4.06
5848 6749 4.077300 ACAGGGATGTGCACTATACATG 57.923 45.455 19.41 18.80 38.78 3.21
5849 6750 5.887214 TTACAGGGATGTGCACTATACAT 57.113 39.130 19.41 5.64 41.21 2.29
5851 6752 8.671384 TTATTTTACAGGGATGTGCACTATAC 57.329 34.615 19.41 10.39 0.00 1.47
5852 6753 9.688091 TTTTATTTTACAGGGATGTGCACTATA 57.312 29.630 19.41 0.00 0.00 1.31
5855 6756 6.493458 AGTTTTATTTTACAGGGATGTGCACT 59.507 34.615 19.41 3.19 0.00 4.40
5863 6778 6.148811 CGAAGCAGAGTTTTATTTTACAGGGA 59.851 38.462 0.00 0.00 0.00 4.20
5881 6796 5.866075 CATATATTGGAAGCATCGAAGCAG 58.134 41.667 15.84 0.00 36.85 4.24
5898 6813 5.503927 AGCGCCTCATTTCAATCCATATAT 58.496 37.500 2.29 0.00 0.00 0.86
5899 6814 4.910195 AGCGCCTCATTTCAATCCATATA 58.090 39.130 2.29 0.00 0.00 0.86
5905 6820 5.173774 TGAATAAGCGCCTCATTTCAATC 57.826 39.130 2.29 0.00 0.00 2.67
5949 6864 4.454678 TCAATACATCAGGGCTAGCAAAG 58.545 43.478 18.24 5.09 0.00 2.77
5984 6899 3.244911 CCCCTTCCAAGCACTAGAAAAGA 60.245 47.826 0.00 0.00 0.00 2.52
6012 6927 9.486857 GAGGCTAATAACTATTTCACGTTTTTC 57.513 33.333 0.00 0.00 0.00 2.29
6013 6928 8.456471 GGAGGCTAATAACTATTTCACGTTTTT 58.544 33.333 0.00 0.00 0.00 1.94
6014 6929 7.827729 AGGAGGCTAATAACTATTTCACGTTTT 59.172 33.333 0.00 0.00 0.00 2.43
6015 6930 7.336396 AGGAGGCTAATAACTATTTCACGTTT 58.664 34.615 0.00 0.00 0.00 3.60
6016 6931 6.885922 AGGAGGCTAATAACTATTTCACGTT 58.114 36.000 0.00 0.00 0.00 3.99
6017 6932 6.324254 AGAGGAGGCTAATAACTATTTCACGT 59.676 38.462 0.00 0.00 0.00 4.49
6018 6933 6.750148 AGAGGAGGCTAATAACTATTTCACG 58.250 40.000 0.00 0.00 0.00 4.35
6019 6934 7.015779 AGGAGAGGAGGCTAATAACTATTTCAC 59.984 40.741 0.00 0.00 0.00 3.18
6020 6935 7.076446 AGGAGAGGAGGCTAATAACTATTTCA 58.924 38.462 0.00 0.00 0.00 2.69
6021 6936 7.453439 AGAGGAGAGGAGGCTAATAACTATTTC 59.547 40.741 0.00 0.00 0.00 2.17
6022 6937 7.309862 AGAGGAGAGGAGGCTAATAACTATTT 58.690 38.462 0.00 0.00 0.00 1.40
6023 6938 6.869930 AGAGGAGAGGAGGCTAATAACTATT 58.130 40.000 0.00 0.00 0.00 1.73
6024 6939 6.477901 AGAGGAGAGGAGGCTAATAACTAT 57.522 41.667 0.00 0.00 0.00 2.12
6025 6940 5.513441 CGAGAGGAGAGGAGGCTAATAACTA 60.513 48.000 0.00 0.00 0.00 2.24
6026 6941 4.736473 GAGAGGAGAGGAGGCTAATAACT 58.264 47.826 0.00 0.00 0.00 2.24
6027 6942 3.504520 CGAGAGGAGAGGAGGCTAATAAC 59.495 52.174 0.00 0.00 0.00 1.89
6028 6943 3.757270 CGAGAGGAGAGGAGGCTAATAA 58.243 50.000 0.00 0.00 0.00 1.40
6029 6944 2.553466 GCGAGAGGAGAGGAGGCTAATA 60.553 54.545 0.00 0.00 0.00 0.98
6030 6945 1.821666 GCGAGAGGAGAGGAGGCTAAT 60.822 57.143 0.00 0.00 0.00 1.73
6031 6946 0.466555 GCGAGAGGAGAGGAGGCTAA 60.467 60.000 0.00 0.00 0.00 3.09
6032 6947 1.149627 GCGAGAGGAGAGGAGGCTA 59.850 63.158 0.00 0.00 0.00 3.93
6033 6948 2.123897 GCGAGAGGAGAGGAGGCT 60.124 66.667 0.00 0.00 0.00 4.58
6034 6949 3.591835 CGCGAGAGGAGAGGAGGC 61.592 72.222 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.